Citrus Sinensis ID: 043169
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 421 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M0B6 | 429 | UDP-glucuronate 4-epimera | yes | no | 0.978 | 0.960 | 0.851 | 0.0 | |
| Q9LPC1 | 434 | UDP-glucuronate 4-epimera | no | no | 0.973 | 0.944 | 0.691 | 1e-166 | |
| O81312 | 430 | UDP-glucuronate 4-epimera | no | no | 0.947 | 0.927 | 0.691 | 1e-165 | |
| O22141 | 437 | UDP-glucuronate 4-epimera | no | no | 0.959 | 0.924 | 0.677 | 1e-162 | |
| Q9STI6 | 436 | UDP-glucuronate 4-epimera | no | no | 0.971 | 0.938 | 0.649 | 1e-148 | |
| Q9LIS3 | 460 | UDP-glucuronate 4-epimera | no | no | 0.954 | 0.873 | 0.607 | 1e-148 | |
| Q04871 | 334 | Uncharacterized 37.6 kDa | N/A | no | 0.752 | 0.949 | 0.465 | 6e-79 | |
| P39858 | 334 | Protein CapI OS=Staphyloc | yes | no | 0.752 | 0.949 | 0.442 | 6e-78 | |
| Q58455 | 326 | Uncharacterized protein M | yes | no | 0.738 | 0.953 | 0.453 | 4e-75 | |
| O54067 | 341 | UDP-glucuronate 5'-epimer | yes | no | 0.752 | 0.929 | 0.404 | 3e-67 |
| >sp|Q9M0B6|GAE1_ARATH UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/425 (85%), Positives = 394/425 (92%), Gaps = 13/425 (3%)
Query: 1 MPSLEEELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVD 60
MPS+E+ELFPSTPGKFKI+RSN RQ HRCF STSTMFLWALFL+ALTASYLSFQSFVD
Sbjct: 1 MPSIEDELFPSTPGKFKIDRSN---RQLHRCFASTSTMFLWALFLIALTASYLSFQSFVD 57
Query: 61 SGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
SGSRY +ASWGGIQWEK VR+SAQIHRSGG+SVLVTGA GFVG+HVSLAL+KRGDGVVGL
Sbjct: 58 SGSRYLTASWGGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGL 117
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFNNYYDPSLK+AR++LL++ G+FV+EGD+NDAKLLAKLFD VAFTHVMHLAAQAGVRY
Sbjct: 118 DNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRY 177
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
A++NP SYVHSNIAGLV LLE CK+ANPQP+IVWASSSSVYGLNE VPFSE+DRTDQPAS
Sbjct: 178 ALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPAS 237
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGEEI HTYNHIYGL+ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT+YR
Sbjct: 238 LYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYR 297
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
GKN VDLARDFTYIDDIVKGCLGSLD+S G APYRIFNLGNTSPVTVP L
Sbjct: 298 GKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPIL 357
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
V+ILE+HLKVKAK+N +EMPGNGDVPFTHANISSA+ EFGY+PTTDL+TGLKKFVRWYLS
Sbjct: 358 VDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLS 417
Query: 411 YYGYN 415
YYGYN
Sbjct: 418 YYGYN 422
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 6 |
| >sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/424 (69%), Positives = 333/424 (78%), Gaps = 14/424 (3%)
Query: 10 PSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVAL--TASYLSFQSFVDSGSRYFS 67
PSTPGKFK+ + R +S + + W+L L Y S S DS R
Sbjct: 8 PSTPGKFKMMDKSPFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNPDSSRRSLR 67
Query: 68 A-SWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY 126
SWGG WEK VRSSA++ G+SVLVTGAAGFVGTHVS ALK+RGDGV+GLDNFN+Y
Sbjct: 68 TYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDY 127
Query: 127 YDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPH 186
YD SLK++R+ALL GVF++EGDIND LL KLF+ V FTHVMHLAAQAGVRYAM+NP
Sbjct: 128 YDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPG 187
Query: 187 SYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATK 246
SYVHSNIAG V LLE CKSANPQP+IVWASSSSVYGLN VPFSE DRTDQPASLYAATK
Sbjct: 188 SYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATK 247
Query: 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVD 306
KAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G NH
Sbjct: 248 KAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGANHGT 307
Query: 307 LARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKLVNILER 356
+ARDFTYIDDIVKGCLG+LDT+ G A R+FNLGNTSPV V LV+ILER
Sbjct: 308 VARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILER 367
Query: 357 HLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNR 416
LKVKAK+N++++P NGDVPFTHANISSAQ+EFGY+P+TDLQTGLKKFVRWYL YY
Sbjct: 368 LLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGYYKQG- 426
Query: 417 GKRV 420
GK+V
Sbjct: 427 GKKV 430
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 580 bits (1496), Expect = e-165, Method: Compositional matrix adjust.
Identities = 296/428 (69%), Positives = 332/428 (77%), Gaps = 29/428 (6%)
Query: 10 PSTPGKFKIERSNTMNRQFHRCF--TSTSTMFLWALFLVALTASYLSFQSFV-----DSG 62
PSTPGKFK FHR +S + + W+L V L + ++S V D
Sbjct: 11 PSTPGKFK--------PYFHRTRWQSSVAKLAFWSLVFVGLIFIFF-YRSPVSSNPADPS 61
Query: 63 SRYFSA-SWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLD 121
R SWGG WEK VRSSA++ G SVLVTGAAGFVGTHVS ALK+RGDGV+GLD
Sbjct: 62 RRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLD 121
Query: 122 NFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYA 181
NFN+YYDPSLK+AR+ALL GVFV+EGDINDA LL KLF+ V FTHVMHLAAQAGVRYA
Sbjct: 122 NFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYA 181
Query: 182 MQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASL 241
M+NP SYVHSNIAG V LLE CKSANPQP+IVWASSSSVYGLN VPFSE DRTDQPASL
Sbjct: 182 MENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 241
Query: 242 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRG 301
YAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G
Sbjct: 242 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEG 301
Query: 302 KNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKLV 351
NH +ARDFTYIDDIVKGCLG+LDT+ G A R+FNLGNTSPV V LV
Sbjct: 302 VNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLV 361
Query: 352 NILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
ILER LKVKAK+N++++P NGDV FTHANISSAQ+E GY+PTTDLQTGLKKF RWYL Y
Sbjct: 362 TILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGY 421
Query: 412 YGYNRGKR 419
YN GK+
Sbjct: 422 --YNGGKK 427
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 572 bits (1474), Expect = e-162, Method: Compositional matrix adjust.
Identities = 286/422 (67%), Positives = 331/422 (78%), Gaps = 18/422 (4%)
Query: 9 FPSTPGKFKIERSNTMNR-QFHRCFT-----STSTMFLWALFLVALTASYLSFQSFVDSG 62
PS+PGKFK+E+S+ ++R +F T S + L +L + S S
Sbjct: 7 IPSSPGKFKMEKSSYLHRLRFQSSLTKFAFFSFFLLCLISLLFLRSPPSINPSSPSDPSR 66
Query: 63 SRYFSASWGGIQWEKHVRSSAQIHRS--GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
+ ++GG WEK +RSSA+I S G++VLVTGAAGFVGTHVS ALK+RGDGV+GL
Sbjct: 67 RSLRTNTYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGL 126
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFN+YYDPSLK+AR+ALL G+F++EGDIND +LL KLF V+FTHVMHLAAQAGVRY
Sbjct: 127 DNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRY 186
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
AM+NP SYVHSNIAG V LLE CKS NPQP+IVWASSSSVYGLN VPFSE D+TDQPAS
Sbjct: 187 AMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDKTDQPAS 246
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK I+++
Sbjct: 247 LYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFE 306
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
NH +ARDFTYIDDIVKGCL +LDT+ GPA R+FNLGNTSPV V L
Sbjct: 307 SANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDL 366
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
V ILER LKVKAKKN+I+MP NGDVPFTHANIS AQ+E GY+PTTDLQTGLKKFVRWYLS
Sbjct: 367 VRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLS 426
Query: 411 YY 412
YY
Sbjct: 427 YY 428
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9STI6|GAE5_ARATH UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 526 bits (1355), Expect = e-148, Method: Compositional matrix adjust.
Identities = 278/428 (64%), Positives = 325/428 (75%), Gaps = 19/428 (4%)
Query: 9 FPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYL--------SFQSFVD 60
PSTPGK+K ++ H + S + LWA +AL YL S ++ D
Sbjct: 7 LPSTPGKYKTDKVPPYGILHHHRYLRLSKLTLWASLFLALFLFYLVLSPPPSPSRRNLND 66
Query: 61 SGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
S S +A +GG WEK VR SA+ GG++VLVTGA+GFVGTHVS+AL++RGDGV+GL
Sbjct: 67 SSS-ISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGL 125
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFN YYDP LK+AR+ LL GVFV+EGDINDA LL KLFD V FTHVMHLAAQAGVRY
Sbjct: 126 DNFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRY 185
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
AMQNP SYV+SNIAG V LLE KSANPQP+IVWASSSSVYGLN VPFSE DRTDQPAS
Sbjct: 186 AMQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPAS 245
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGE IAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK ITV+
Sbjct: 246 LYAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFE 305
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
+ +ARDFTYIDDIVKGCLG+LDT+ GPA +RI+NLGNTSPV V KL
Sbjct: 306 SPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKL 365
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
V ILE+ LK+KAKK ++ +P NGDV FTHANI+ AQ E GY+P DL+TGLKKFV+WY+
Sbjct: 366 VTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMG 425
Query: 411 YYGYNRGK 418
+Y ++ K
Sbjct: 426 FYTGSKKK 433
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9LIS3|GAE6_ARATH UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1348), Expect = e-148, Method: Compositional matrix adjust.
Identities = 265/436 (60%), Positives = 322/436 (73%), Gaps = 34/436 (7%)
Query: 12 TPGKFKIERSNTMNRQFH--RCFTSTSTMFLWA----------LFLV---------ALTA 50
T K+ER N+ R+ H + ++S + A +F + A A
Sbjct: 9 TSKTVKLERYNSYLRKIHSTKVLNASSKVLFRATLLVALVLVLIFAINYPPLSDSRAAAA 68
Query: 51 SYLSFQSFVDSG---SRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVS 107
+L +SF+ +G S S+S GG WEK VR S+ R G+SVLVTGAAGFVG+H S
Sbjct: 69 HHLHRRSFLSTGLFSSSSSSSSIGGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCS 128
Query: 108 LALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167
LAL+KRGDGV+G DNFN+YYDPSLK+AR+ LL VF++EGD+ND LL KLFD V FT
Sbjct: 129 LALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFT 188
Query: 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENV 227
H++HLAAQAGVRYAM+NP SY+ SNIAG V LLE K+ANPQP+IVWASSSSVYGLN
Sbjct: 189 HILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQPAIVWASSSSVYGLNTEN 248
Query: 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFT 287
PFSE RTDQPASLYAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT
Sbjct: 249 PFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFT 308
Query: 288 RNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIF 337
++IL GK I +YR +++ ++ARDFTYIDDIVKGC+G+LDT+ G A R++
Sbjct: 309 KDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVY 368
Query: 338 NLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDL 397
NLGNTSPV V +LV+ILE L KAKK++I+MP NGDVP+THAN+S A K+FGY+PTTDL
Sbjct: 369 NLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDL 428
Query: 398 QTGLKKFVRWYLSYYG 413
GL+KFV+WY+ YYG
Sbjct: 429 AAGLRKFVKWYVGYYG 444
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (754), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 157/337 (46%), Positives = 210/337 (62%), Gaps = 20/337 (5%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M LVTGAAGF+G HVS L + G VVG+DN N+YYD SLK+AR LL G + D
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D + + LF + F V + VRY+++NPH+Y SN+ G + +LE C+ Q
Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+++ASSSSVYGLN +PFS D D P SLYAATKKA E +AHTY+H+YGL TGLRFF
Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT--- 327
TVYGPWGRPDMA F FT+ +L+GK I VY N+ + RDFTYIDDI + + D
Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVY---NYGKMKRDFTYIDDIAEAIIRLQDVIPH 236
Query: 328 ------------SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDV 375
+A APYR++N+GN+SPV + + LE L ++AKKN++ + GDV
Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQP-GDV 295
Query: 376 PFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
T A+ + + G+ P T ++ G+K FV WY +Y
Sbjct: 296 LETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFY 332
|
Escherichia coli O111:H- (taxid: 168927) |
| >sp|P39858|CAPI_STAAU Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 149/337 (44%), Positives = 215/337 (63%), Gaps = 20/337 (5%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M +L+TG AGF+G+H++ L K+G V+G+D+ N+YY SLK+ R + +
Sbjct: 1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK 60
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ + L+K+F V++LAAQAGVRY+++NP +Y+ SNI G + +LE + N Q
Sbjct: 61 LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ- 119
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
++++ASSSSVYG N + PFS +D D P SLYAATKK+ E +AHTY+H+Y L TGLRFF
Sbjct: 120 NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF 179
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330
TVYGPWGRPDMA F FT+ I+ + I VY NH ++ RDFTY+DDIV+ + A
Sbjct: 180 TVYGPWGRPDMALFKFTKAIVNDQAIDVY---NHGNMMRDFTYVDDIVEAISRLVKKPAS 236
Query: 331 P---------------APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDV 375
P APY+++N+GN SPV + + V +E L +A+KN +++ GDV
Sbjct: 237 PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQP-GDV 295
Query: 376 PFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
P T+AN+ ++ ++P T +Q G+ KFV WYL YY
Sbjct: 296 PETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY 332
|
Required for the biosynthesis of type 1 capsular polysaccharide. Staphylococcus aureus (taxid: 1280) EC: 4 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1055 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (721), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 146/322 (45%), Positives = 212/322 (65%), Gaps = 11/322 (3%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKARKALLNNHGVFV-IE 148
++LVTG+AGF+G H+S L + V+G+DN NNYY+P LK+ R +L N+ + I+
Sbjct: 5 NILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIK 64
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
D +D L + ++HL AQAGVRY++QNP +Y+ SN G + + E + +
Sbjct: 65 LDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDI 124
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
+ +V+ASSSSVYG N +PFSE DR D+P SLYA+TK++ E +AH Y+H+YG+ + GLR
Sbjct: 125 E-KVVYASSSSVYGGNRKIPFSEDDRVDKPISLYASTKRSNELMAHVYHHLYGIKMIGLR 183
Query: 269 FFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328
FFTVYG +GRPDMAYF F +NIL GK I VY N+ ++ RDFTYI D+V G L ++
Sbjct: 184 FFTVYGEYGRPDMAYFKFAKNILLGKEIEVY---NYGNMERDFTYISDVVDGILRAIKKD 240
Query: 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKE 388
Y IFNLGN+ PV + + ++E++L KAKK + M +GDV T+A++S ++K
Sbjct: 241 ---FDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQ-DGDVLRTYADLSKSEKL 296
Query: 389 FGYRPTTDLQTGLKKFVRWYLS 410
GY+P ++ GLK+F W+L
Sbjct: 297 LGYKPKVTIEEGLKRFCNWFLE 318
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
| >sp|O54067|LPSL_RHIME UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti (strain 1021) GN=lspL PE=3 SV=2 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 200/339 (58%), Gaps = 22/339 (6%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLN-NHGVFVIEG 149
M L+TG AGF+G HV+ L G VVG D YYD +LK+ R A+L ++G +
Sbjct: 1 MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA 60
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
+ D L + + ++HLAAQAGVRY+++NP +YV +N+ G +LE K+ P+
Sbjct: 61 MLEDRAALDRAAELAEPEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK 120
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
++ AS+SS+YG NE +PF+EADR D+P +LYAATKK+ E +AH+Y H+Y + T RF
Sbjct: 121 -HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRF 179
Query: 270 FTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL------- 322
FTVYGPWGRPDMA F F I G+PI +Y G+ ++RDFTYIDD+V+ +
Sbjct: 180 FTVYGPWGRPDMALFKFVDAIHNGRPIDIY-GEGR--MSRDFTYIDDLVESIVRLSHVPP 236
Query: 323 ---------GSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNG 373
+ DT + AP+R+ N G PV + V +E+ + A N++ M G
Sbjct: 237 SEENRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPM-QQG 295
Query: 374 DVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
DVP T A+ + G++P+ ++ G+ +FV WY Y
Sbjct: 296 DVPRTFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNY 334
|
Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 421 | ||||||
| 356562525 | 431 | PREDICTED: UDP-glucuronate 4-epimerase 1 | 1.0 | 0.976 | 0.874 | 0.0 | |
| 211906522 | 431 | UDP-D-glucuronic acid 4-epimerase [Gossy | 0.992 | 0.969 | 0.880 | 0.0 | |
| 356500703 | 431 | PREDICTED: UDP-glucuronate 4-epimerase 1 | 1.0 | 0.976 | 0.870 | 0.0 | |
| 255574623 | 433 | UDP-glucuronate 5-epimerase, putative [R | 1.0 | 0.972 | 0.872 | 0.0 | |
| 449506239 | 431 | PREDICTED: UDP-glucuronate 4-epimerase 1 | 1.0 | 0.976 | 0.870 | 0.0 | |
| 449453934 | 431 | PREDICTED: UDP-glucuronate 4-epimerase 1 | 1.0 | 0.976 | 0.867 | 0.0 | |
| 224142327 | 431 | predicted protein [Populus trichocarpa] | 1.0 | 0.976 | 0.867 | 0.0 | |
| 15234745 | 429 | UDP-D-glucuronate 4-epimerase 1 [Arabido | 0.978 | 0.960 | 0.851 | 0.0 | |
| 224091861 | 431 | predicted protein [Populus trichocarpa] | 1.0 | 0.976 | 0.853 | 0.0 | |
| 357137383 | 441 | PREDICTED: UDP-glucuronate 4-epimerase 1 | 0.995 | 0.950 | 0.799 | 0.0 |
| >gi|356562525|ref|XP_003549520.1| PREDICTED: UDP-glucuronate 4-epimerase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/431 (87%), Positives = 404/431 (93%), Gaps = 10/431 (2%)
Query: 1 MPSLEEELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVD 60
MPSLEEELFPSTPGKFKIERS+ MNRQ +RCF STSTMFLWALFL+ALTASYLSFQ FVD
Sbjct: 1 MPSLEEELFPSTPGKFKIERSHHMNRQLYRCFASTSTMFLWALFLIALTASYLSFQGFVD 60
Query: 61 SGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
SGSRY +ASWGGIQWEK VR+SAQIHR GGMSVLVTGAAGFVG+HVSLALK+RGDGVVGL
Sbjct: 61 SGSRYLTASWGGIQWEKQVRTSAQIHRQGGMSVLVTGAAGFVGSHVSLALKRRGDGVVGL 120
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFN+YYDPSLKKARK+LL H VF++EGD+NDAKLLAKLFD VAFTHVMHLAAQAGVRY
Sbjct: 121 DNFNDYYDPSLKKARKSLLATHDVFIVEGDVNDAKLLAKLFDVVAFTHVMHLAAQAGVRY 180
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
AM+NPHSYVHSNIAGLVTLLEACK+ANPQP+IVWASSSSVYGLNE VPFSE+D+TDQPAS
Sbjct: 181 AMENPHSYVHSNIAGLVTLLEACKTANPQPAIVWASSSSVYGLNEKVPFSESDQTDQPAS 240
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGEEI HTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR
Sbjct: 241 LYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
GKNHVDLARDFTYIDDIVKGC+GSLDTSA GPAPYRIFNLGNTSPVTVP L
Sbjct: 301 GKNHVDLARDFTYIDDIVKGCVGSLDTSAKSTGSGGKKRGPAPYRIFNLGNTSPVTVPTL 360
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
V+ILERHLKVKAK+N+++MPGNGDVPFTHANISSA++E GY+PTTDLQTGLKKFV+WYLS
Sbjct: 361 VSILERHLKVKAKRNIVDMPGNGDVPFTHANISSARRELGYKPTTDLQTGLKKFVKWYLS 420
Query: 411 YYGYNRGKRVN 421
YYGYN GK VN
Sbjct: 421 YYGYNHGKPVN 431
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906522|gb|ACJ11754.1| UDP-D-glucuronic acid 4-epimerase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/428 (88%), Positives = 402/428 (93%), Gaps = 10/428 (2%)
Query: 1 MPSLEEELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVD 60
MPSLE+ELFPSTPGKFK++R++ MNRQFHRCF STSTMFLWALFL+ALTASYL FQSFVD
Sbjct: 1 MPSLEDELFPSTPGKFKVDRAHNMNRQFHRCFASTSTMFLWALFLIALTASYLRFQSFVD 60
Query: 61 SGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
SGSRYFSASWGGIQWEK VR+SAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL
Sbjct: 61 SGSRYFSASWGGIQWEKQVRNSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFNNYYDPSLKKARK+LLN+HG+ V+EGD+NDAKLLAKLFD VAFTHVMHLAAQAGVRY
Sbjct: 121 DNFNNYYDPSLKKARKSLLNSHGILVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRY 180
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
AM+NP+SYVHSNIAGLVTLLE CKSANPQP++VWASSSSVYGLNE VPFSEADRTDQPAS
Sbjct: 181 AMENPNSYVHSNIAGLVTLLEICKSANPQPAVVWASSSSVYGLNEKVPFSEADRTDQPAS 240
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGEEI HTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT+YR
Sbjct: 241 LYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYR 300
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
GKN VDLARDFTYIDDIVKGCLGSLDTS G APYRIFNLGNTSPV VP+L
Sbjct: 301 GKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKKGNAPYRIFNLGNTSPVKVPEL 360
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
VNILERHLKVKAK+N+++MPGNGDVPFTHANIS AQ+EFGY+P+TDLQTGLKKFVRWYLS
Sbjct: 361 VNILERHLKVKAKRNIVDMPGNGDVPFTHANISLAQREFGYKPSTDLQTGLKKFVRWYLS 420
Query: 411 YYGYNRGK 418
YYGYN K
Sbjct: 421 YYGYNNRK 428
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500703|ref|XP_003519171.1| PREDICTED: UDP-glucuronate 4-epimerase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/431 (87%), Positives = 404/431 (93%), Gaps = 10/431 (2%)
Query: 1 MPSLEEELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVD 60
MPSLEEELFPSTPGKFKIER++ MNRQ +RCF STSTMFLWALFL+ALTASYLSFQ FVD
Sbjct: 1 MPSLEEELFPSTPGKFKIERAHHMNRQLYRCFASTSTMFLWALFLIALTASYLSFQGFVD 60
Query: 61 SGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
SGSRY SASWGGIQWEK VR+SAQIHR GGMSVLVTGAAGFVG+HVSLALK+RGDGVVGL
Sbjct: 61 SGSRYLSASWGGIQWEKQVRTSAQIHRQGGMSVLVTGAAGFVGSHVSLALKRRGDGVVGL 120
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFN+YYDPSLKKARK+LL H VF+++GD+NDAKLLAKLFD VAFTHVMHLAAQAGVRY
Sbjct: 121 DNFNDYYDPSLKKARKSLLAKHDVFIVDGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRY 180
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
AM+NPHSYVHSNIAGLVTLLEACKSANPQP++VWASSSSVYGLNE VPFSE+D+TD+PAS
Sbjct: 181 AMENPHSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDQTDRPAS 240
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGEEI HTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR
Sbjct: 241 LYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
GKNHVDLARDFTYIDDIVKGC+GSLDTSA GPAPYRIFNLGNTSPVTVP L
Sbjct: 301 GKNHVDLARDFTYIDDIVKGCVGSLDTSAKSTGSGGKKRGPAPYRIFNLGNTSPVTVPTL 360
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
V+ILERHLKVKAK+N+++MPGNGDVPFTHANISSA++E GY+PTTDLQTGLKKFV+WYLS
Sbjct: 361 VSILERHLKVKAKRNIVDMPGNGDVPFTHANISSARRELGYKPTTDLQTGLKKFVKWYLS 420
Query: 411 YYGYNRGKRVN 421
YYGYN GK VN
Sbjct: 421 YYGYNHGKPVN 431
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574623|ref|XP_002528222.1| UDP-glucuronate 5-epimerase, putative [Ricinus communis] gi|223532383|gb|EEF34179.1| UDP-glucuronate 5-epimerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/433 (87%), Positives = 409/433 (94%), Gaps = 12/433 (2%)
Query: 1 MPSLEEELFPSTPGKFKIERS-NTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFV 59
MPSLEEELFPSTPGKFKI+R +TMNRQF+RCFTSTSTMFLWALFL+ALTASYLSFQSF+
Sbjct: 1 MPSLEEELFPSTPGKFKIDRGGHTMNRQFYRCFTSTSTMFLWALFLIALTASYLSFQSFI 60
Query: 60 DSGSRYFSASWGGIQWEKHVRSSAQIHR-SGGMSVLVTGAAGFVGTHVSLALKKRGDGVV 118
DSGS+YFSASWGG+QWEK VR+SAQIHR SGG+SVLVTGAAGFVGTHVSLALKKRGDGVV
Sbjct: 61 DSGSKYFSASWGGLQWEKQVRNSAQIHRPSGGVSVLVTGAAGFVGTHVSLALKKRGDGVV 120
Query: 119 GLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGV 178
GLDNFNNYYDPSLKKARK+LLN+HGVF++EGD+NDA+LLAKLFD VAF+HVMHLAAQAGV
Sbjct: 121 GLDNFNNYYDPSLKKARKSLLNSHGVFIVEGDVNDARLLAKLFDVVAFSHVMHLAAQAGV 180
Query: 179 RYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQP 238
RYAM+NPHSYVHSNIAGLVTLLEACKSANPQP+IVWASSSSVYGLN+ VPFSE+DRTDQP
Sbjct: 181 RYAMENPHSYVHSNIAGLVTLLEACKSANPQPAIVWASSSSVYGLNDKVPFSESDRTDQP 240
Query: 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITV 298
ASLYAATKKAGEEI HTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITV
Sbjct: 241 ASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITV 300
Query: 299 YRGKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVP 348
YRGKN VDLARDFTYIDDIVKGC+GSLDT+ GPAPYRIFNLGNTSPVTVP
Sbjct: 301 YRGKNRVDLARDFTYIDDIVKGCVGSLDTAGKSTGSGGKKRGPAPYRIFNLGNTSPVTVP 360
Query: 349 KLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWY 408
LV+ILE+HLK+KAK+NV++MPGNGDVPFTHANIS A++E GY+PTTDLQTGLKKFVRWY
Sbjct: 361 TLVSILEKHLKMKAKRNVVDMPGNGDVPFTHANISLARRELGYKPTTDLQTGLKKFVRWY 420
Query: 409 LSYYGYNRGKRVN 421
LSYYGYN GK VN
Sbjct: 421 LSYYGYNHGKAVN 433
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449506239|ref|XP_004162690.1| PREDICTED: UDP-glucuronate 4-epimerase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/431 (87%), Positives = 401/431 (93%), Gaps = 10/431 (2%)
Query: 1 MPSLEEELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVD 60
MPSLE+ELFPSTPGKFKI+R++ MNRQFHRCF STSTMFLWALFL+ALTASYLSFQSFVD
Sbjct: 1 MPSLEDELFPSTPGKFKIDRNHPMNRQFHRCFASTSTMFLWALFLIALTASYLSFQSFVD 60
Query: 61 SGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
SGSRYFSASWGGIQWEK VR SAQ HR+ G SVLVTGAAGFVG+HVSLALKKRGDGVVGL
Sbjct: 61 SGSRYFSASWGGIQWEKQVRISAQPHRTNGFSVLVTGAAGFVGSHVSLALKKRGDGVVGL 120
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFN+YYDPSLKKARK+LL+NHG+F+++GDIND +LL KLFD V FTHVMHLAAQAGVRY
Sbjct: 121 DNFNSYYDPSLKKARKSLLSNHGIFIVDGDINDVRLLDKLFDVVVFTHVMHLAAQAGVRY 180
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
AM+NP+SYVHSNIAGLVTLLEACKSANPQP++VWASSSSVYGLNE VPFSE+DRTDQPAS
Sbjct: 181 AMENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPAS 240
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGEEI HTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITV+R
Sbjct: 241 LYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFR 300
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
GKN VDLARDFTYIDDIVKGCLGSLDTS G APYRIFNLGNTSPVTVP L
Sbjct: 301 GKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKTGAAPYRIFNLGNTSPVTVPTL 360
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
V+ILERHLKVKAKKNV+EMPGNGDVPFTHANISSA++E GY+PTTDLQTGLKKFVRWYLS
Sbjct: 361 VSILERHLKVKAKKNVVEMPGNGDVPFTHANISSARRELGYKPTTDLQTGLKKFVRWYLS 420
Query: 411 YYGYNRGKRVN 421
YYGYN GK VN
Sbjct: 421 YYGYNHGKPVN 431
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453934|ref|XP_004144711.1| PREDICTED: UDP-glucuronate 4-epimerase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/431 (86%), Positives = 401/431 (93%), Gaps = 10/431 (2%)
Query: 1 MPSLEEELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVD 60
MPSLE+ELFPSTPGKFKI+R++ MNRQFHRCF STSTMFLWALFL+ALTASYLSFQSFVD
Sbjct: 1 MPSLEDELFPSTPGKFKIDRNHPMNRQFHRCFASTSTMFLWALFLIALTASYLSFQSFVD 60
Query: 61 SGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
SGSRYFSASWGGIQWEK VR SAQ HR+ G SV+VTGAAGFVG+HVSLALKKRGDGVVGL
Sbjct: 61 SGSRYFSASWGGIQWEKQVRISAQPHRTNGFSVVVTGAAGFVGSHVSLALKKRGDGVVGL 120
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFN+YYDPSLKKARK+LL+NHG+F+++GDIND +LL KLFD V FTHVMHLAAQAGVRY
Sbjct: 121 DNFNSYYDPSLKKARKSLLSNHGIFIVDGDINDVRLLDKLFDVVVFTHVMHLAAQAGVRY 180
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
AM+NP+SYVHSNIAGLVTLLEACKSANPQP++VWASSSSVYGLNE VPFSE+DRTDQPAS
Sbjct: 181 AMENPNSYVHSNIAGLVTLLEACKSANPQPAVVWASSSSVYGLNEKVPFSESDRTDQPAS 240
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGEEI HTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITV+R
Sbjct: 241 LYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVFR 300
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
GKN VDLARDFTYIDDIVKGCLGSLDTS G APYRIFNLGNTSPVTVP L
Sbjct: 301 GKNRVDLARDFTYIDDIVKGCLGSLDTSGKSTGSGGKKTGAAPYRIFNLGNTSPVTVPTL 360
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
V+ILERHLKVKAKKNV+EMPGNGDVPFTHANISSA++E GY+PTTDLQTGLKKFVRWYLS
Sbjct: 361 VSILERHLKVKAKKNVVEMPGNGDVPFTHANISSARRELGYKPTTDLQTGLKKFVRWYLS 420
Query: 411 YYGYNRGKRVN 421
YYGYN GK VN
Sbjct: 421 YYGYNHGKPVN 431
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142327|ref|XP_002324510.1| predicted protein [Populus trichocarpa] gi|222865944|gb|EEF03075.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/431 (86%), Positives = 406/431 (94%), Gaps = 10/431 (2%)
Query: 1 MPSLEEELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVD 60
MPSLEEELFPSTPGKFKI+R++ MNRQF+RCF STSTMFLWALFL+ALTASYLSFQSFVD
Sbjct: 1 MPSLEEELFPSTPGKFKIDRAHNMNRQFNRCFASTSTMFLWALFLIALTASYLSFQSFVD 60
Query: 61 SGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
SGSRYF+ASWGGIQWEK +R+SAQIHRS GMSVLVTGAAGFVG+HVSLALKKRGDGVVG+
Sbjct: 61 SGSRYFTASWGGIQWEKQIRNSAQIHRSKGMSVLVTGAAGFVGSHVSLALKKRGDGVVGI 120
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFNNYYDPSLKKARK+LLNN G+F++EGDINDA+L+AKLFD VAFTHVMHLAAQAGVRY
Sbjct: 121 DNFNNYYDPSLKKARKSLLNNQGIFIVEGDINDARLIAKLFDIVAFTHVMHLAAQAGVRY 180
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
AM+NPHSYVHSNIAGLVTLLEACK ANPQPS+VWASSSSVYGLNE VPFSE+DRTDQPAS
Sbjct: 181 AMENPHSYVHSNIAGLVTLLEACKLANPQPSVVWASSSSVYGLNEKVPFSESDRTDQPAS 240
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGEEI HTYNHIYGLS+TGLRFFTVYGP+GRPDMAYFSFTRNILQGKPITVYR
Sbjct: 241 LYAATKKAGEEITHTYNHIYGLSVTGLRFFTVYGPFGRPDMAYFSFTRNILQGKPITVYR 300
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
GKN VDLARDFTYIDDIVKGC+GSLDTS GPAPYRIFNLGNTSPVTVP L
Sbjct: 301 GKNRVDLARDFTYIDDIVKGCVGSLDTSGKSTGSGGKKRGPAPYRIFNLGNTSPVTVPTL 360
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
VNILERHLKVKAK+N+++MPGNGDVPFTHANIS AQ+E GY+PTTDL+TGLKKFV+WYL+
Sbjct: 361 VNILERHLKVKAKRNIVDMPGNGDVPFTHANISLAQRELGYKPTTDLETGLKKFVKWYLT 420
Query: 411 YYGYNRGKRVN 421
YYGYNRGK V+
Sbjct: 421 YYGYNRGKAVH 431
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15234745|ref|NP_194773.1| UDP-D-glucuronate 4-epimerase 1 [Arabidopsis thaliana] gi|297798928|ref|XP_002867348.1| UDP-D-glucuronate 4-epimerase 1 [Arabidopsis lyrata subsp. lyrata] gi|75311748|sp|Q9M0B6.1|GAE1_ARATH RecName: Full=UDP-glucuronate 4-epimerase 1; AltName: Full=UDP-glucuronic acid epimerase 1; Short=AtUGlcAE3 gi|7269945|emb|CAB79762.1| nucleotide sugar epimerase-like protein [Arabidopsis thaliana] gi|15810529|gb|AAL07152.1| putative nucleotide sugar epimerase [Arabidopsis thaliana] gi|20466778|gb|AAM20706.1| nucleotide sugar epimerase-like protein [Arabidopsis thaliana] gi|21553636|gb|AAM62729.1| nucleotide sugar epimerase-like protein [Arabidopsis thaliana] gi|23198200|gb|AAN15627.1| nucleotide sugar epimerase-like protein [Arabidopsis thaliana] gi|50429331|gb|AAT77233.1| UDP-D-glucuronate 4-epimerase [Arabidopsis thaliana] gi|297313184|gb|EFH43607.1| UDP-D-glucuronate 4-epimerase 1 [Arabidopsis lyrata subsp. lyrata] gi|332660365|gb|AEE85765.1| UDP-D-glucuronate 4-epimerase 1 [Arabidopsis thaliana] gi|385137886|gb|AFI41204.1| UDP-D-glucuronate 4-epimerase 1, partial [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/425 (85%), Positives = 394/425 (92%), Gaps = 13/425 (3%)
Query: 1 MPSLEEELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVD 60
MPS+E+ELFPSTPGKFKI+RSN RQ HRCF STSTMFLWALFL+ALTASYLSFQSFVD
Sbjct: 1 MPSIEDELFPSTPGKFKIDRSN---RQLHRCFASTSTMFLWALFLIALTASYLSFQSFVD 57
Query: 61 SGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
SGSRY +ASWGGIQWEK VR+SAQIHRSGG+SVLVTGA GFVG+HVSLAL+KRGDGVVGL
Sbjct: 58 SGSRYLTASWGGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGL 117
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFNNYYDPSLK+AR++LL++ G+FV+EGD+NDAKLLAKLFD VAFTHVMHLAAQAGVRY
Sbjct: 118 DNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRY 177
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
A++NP SYVHSNIAGLV LLE CK+ANPQP+IVWASSSSVYGLNE VPFSE+DRTDQPAS
Sbjct: 178 ALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPAS 237
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGEEI HTYNHIYGL+ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT+YR
Sbjct: 238 LYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYR 297
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
GKN VDLARDFTYIDDIVKGCLGSLD+S G APYRIFNLGNTSPVTVP L
Sbjct: 298 GKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPIL 357
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
V+ILE+HLKVKAK+N +EMPGNGDVPFTHANISSA+ EFGY+PTTDL+TGLKKFVRWYLS
Sbjct: 358 VDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLS 417
Query: 411 YYGYN 415
YYGYN
Sbjct: 418 YYGYN 422
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091861|ref|XP_002309376.1| predicted protein [Populus trichocarpa] gi|222855352|gb|EEE92899.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/431 (85%), Positives = 399/431 (92%), Gaps = 10/431 (2%)
Query: 1 MPSLEEELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVD 60
MP+LE+ELFPSTPGKFKI+R++TMNR FHRCF STSTMFLWALFLVALTASYLSFQSFV
Sbjct: 1 MPALEDELFPSTPGKFKIDRAHTMNRHFHRCFGSTSTMFLWALFLVALTASYLSFQSFVY 60
Query: 61 SGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
+GSRY +ASWGGIQWEK +R SAQIHRS GMSVLVTGAAGFVG+HVSLALKKRGDGVVG+
Sbjct: 61 TGSRYLTASWGGIQWEKQIRHSAQIHRSNGMSVLVTGAAGFVGSHVSLALKKRGDGVVGI 120
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFNNYYDPSLK+ARK+LLNN G+F++EGDINDA+L+AKLFD VAFTHVMHLAAQAGVRY
Sbjct: 121 DNFNNYYDPSLKRARKSLLNNQGIFIVEGDINDARLIAKLFDTVAFTHVMHLAAQAGVRY 180
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
AM+NPHSYVHSNIAGLVTLLEACKSA PQPS+VWASSSSVYGLNENVPFSE+DRTDQPAS
Sbjct: 181 AMENPHSYVHSNIAGLVTLLEACKSAYPQPSVVWASSSSVYGLNENVPFSESDRTDQPAS 240
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGEEI HTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR
Sbjct: 241 LYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
GK+ DLARDFT+IDDIVKGC+GSLDTS GPAPYRIFNLGNTSPVTVP L
Sbjct: 301 GKDRADLARDFTFIDDIVKGCVGSLDTSGKSTGSGGKKRGPAPYRIFNLGNTSPVTVPTL 360
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
V++LERHLKVKAK+N ++MPGNGDVPFTHANIS A +E GY+PTTDL TGLKKFV+WYLS
Sbjct: 361 VSLLERHLKVKAKRNFVDMPGNGDVPFTHANISLAHRELGYKPTTDLATGLKKFVKWYLS 420
Query: 411 YYGYNRGKRVN 421
YYGYN GK VN
Sbjct: 421 YYGYNHGKAVN 431
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357137383|ref|XP_003570280.1| PREDICTED: UDP-glucuronate 4-epimerase 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/439 (79%), Positives = 390/439 (88%), Gaps = 20/439 (4%)
Query: 1 MPSLEEELFPSTPGKFKIERSN----TMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQ 56
M +LE++LFPSTPGK KIER+ MNRQ HRCF STSTMFLWALFLVA+TASYLSFQ
Sbjct: 1 MRALEDDLFPSTPGKVKIERAGGGAMAMNRQLHRCFASTSTMFLWALFLVAMTASYLSFQ 60
Query: 57 SFVDSGSRYFSASWGGIQWEKHVRSSAQIHR------SGGMSVLVTGAAGFVGTHVSLAL 110
SFVD+ S+YF+ASWGG+ WE+ +R+SA + R GMSVLVTGAAGFVGTH SLAL
Sbjct: 61 SFVDTSSKYFAASWGGLHWERQIRASAAVRRPPGSAAGAGMSVLVTGAAGFVGTHCSLAL 120
Query: 111 KKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170
+KRGDGVVG+DNFN+YYDPSLKKARKALL +HGVFV+EGDIND +LLAKLFD V FTHV+
Sbjct: 121 RKRGDGVVGIDNFNSYYDPSLKKARKALLTSHGVFVVEGDINDGRLLAKLFDVVPFTHVL 180
Query: 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFS 230
HLAAQAGVRYAM+NP SYVHSN+AGLVTLLEACK+A+PQP+IVWASSSSVYGLN+ VPFS
Sbjct: 181 HLAAQAGVRYAMENPASYVHSNVAGLVTLLEACKNADPQPAIVWASSSSVYGLNDKVPFS 240
Query: 231 EADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNI 290
EADRTDQPASLYAATKKAGEEI H+YNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNI
Sbjct: 241 EADRTDQPASLYAATKKAGEEITHSYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNI 300
Query: 291 LQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLG 340
LQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT+ GPAPYRIFNLG
Sbjct: 301 LQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTAGRSTGTGGKKRGPAPYRIFNLG 360
Query: 341 NTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTG 400
NTSPVTVP LV+ILE+HL+VKAKK+VIEMPGNGDVPFTHANIS A+++ GY+PTT+L G
Sbjct: 361 NTSPVTVPTLVSILEKHLRVKAKKHVIEMPGNGDVPFTHANISLARQQLGYKPTTNLDAG 420
Query: 401 LKKFVRWYLSYYGYNRGKR 419
LKKFV+WYLSYYGY RG +
Sbjct: 421 LKKFVKWYLSYYGYTRGSK 439
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 421 | ||||||
| TAIR|locus:2118711 | 429 | GAE1 "UDP-D-glucuronate 4-epim | 0.992 | 0.974 | 0.842 | 2.9e-199 | |
| TAIR|locus:2025472 | 434 | GAE2 "UDP-D-glucuronate 4-epim | 0.973 | 0.944 | 0.691 | 2.9e-151 | |
| TAIR|locus:2126846 | 430 | GAE3 "UDP-D-glucuronate 4-epim | 0.947 | 0.927 | 0.693 | 5.4e-150 | |
| TAIR|locus:2050921 | 437 | GAE4 "UDP-D-glucuronate 4-epim | 0.957 | 0.922 | 0.681 | 2.3e-149 | |
| TAIR|locus:2139134 | 436 | GAE5 "UDP-D-glucuronate 4-epim | 0.969 | 0.935 | 0.651 | 2.6e-143 | |
| TAIR|locus:2076066 | 460 | GAE6 "UDP-D-glucuronate 4-epim | 0.871 | 0.797 | 0.671 | 3.7e-135 | |
| TIGR_CMR|CBU_0844 | 339 | CBU_0844 "capsular polysacchar | 0.752 | 0.935 | 0.505 | 1.3e-82 | |
| UNIPROTKB|Q8E8H8 | 335 | wcvA "UDP-glucuronate 4-epimer | 0.752 | 0.946 | 0.508 | 6.8e-79 | |
| TIGR_CMR|SO_4686 | 335 | SO_4686 "NAD dependent epimera | 0.752 | 0.946 | 0.508 | 6.8e-79 | |
| TIGR_CMR|GSU_2241 | 336 | GSU_2241 "capsular polysacchar | 0.752 | 0.943 | 0.476 | 1.1e-78 |
| TAIR|locus:2118711 GAE1 "UDP-D-glucuronate 4-epimerase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1929 (684.1 bits), Expect = 2.9e-199, P = 2.9e-199
Identities = 364/432 (84%), Positives = 398/432 (92%)
Query: 1 MPSLEEELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVD 60
MPS+E+ELFPSTPGKFKI+RSN RQ HRCF STSTMFLWALFL+ALTASYLSFQSFVD
Sbjct: 1 MPSIEDELFPSTPGKFKIDRSN---RQLHRCFASTSTMFLWALFLIALTASYLSFQSFVD 57
Query: 61 SGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120
SGSRY +ASWGGIQWEK VR+SAQIHRSGG+SVLVTGA GFVG+HVSLAL+KRGDGVVGL
Sbjct: 58 SGSRYLTASWGGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGL 117
Query: 121 DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRY 180
DNFNNYYDPSLK+AR++LL++ G+FV+EGD+NDAKLLAKLFD VAFTHVMHLAAQAGVRY
Sbjct: 118 DNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRY 177
Query: 181 AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240
A++NP SYVHSNIAGLV LLE CK+ANPQP+IVWASSSSVYGLNE VPFSE+DRTDQPAS
Sbjct: 178 ALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPAS 237
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300
LYAATKKAGEEI HTYNHIYGL+ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT+YR
Sbjct: 238 LYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYR 297
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKL 350
GKN VDLARDFTYIDDIVKGCLGSLD+S G APYRIFNLGNTSPVTVP L
Sbjct: 298 GKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPIL 357
Query: 351 VNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
V+ILE+HLKVKAK+N +EMPGNGDVPFTHANISSA+ EFGY+PTTDL+TGLKKFVRWYLS
Sbjct: 358 VDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLS 417
Query: 411 YYGYN-RGKRVN 421
YYGYN + K V+
Sbjct: 418 YYGYNTKAKLVH 429
|
|
| TAIR|locus:2025472 GAE2 "UDP-D-glucuronate 4-epimerase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1476 (524.6 bits), Expect = 2.9e-151, P = 2.9e-151
Identities = 293/424 (69%), Positives = 333/424 (78%)
Query: 10 PSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTAS--YLSFQSFVDSGSRYFS 67
PSTPGKFK+ + R +S + + W+L L Y S S DS R
Sbjct: 8 PSTPGKFKMMDKSPFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNPDSSRRSLR 67
Query: 68 A-SWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY 126
SWGG WEK VRSSA++ G+SVLVTGAAGFVGTHVS ALK+RGDGV+GLDNFN+Y
Sbjct: 68 TYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDY 127
Query: 127 YDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPH 186
YD SLK++R+ALL GVF++EGDIND LL KLF+ V FTHVMHLAAQAGVRYAM+NP
Sbjct: 128 YDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPG 187
Query: 187 SYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATK 246
SYVHSNIAG V LLE CKSANPQP+IVWASSSSVYGLN VPFSE DRTDQPASLYAATK
Sbjct: 188 SYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATK 247
Query: 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVD 306
KAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G NH
Sbjct: 248 KAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGANHGT 307
Query: 307 LARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKLVNILER 356
+ARDFTYIDDIVKGCLG+LDT+ G A R+FNLGNTSPV V LV+ILER
Sbjct: 308 VARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILER 367
Query: 357 HLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNR 416
LKVKAK+N++++P NGDVPFTHANISSAQ+EFGY+P+TDLQTGLKKFVRWYL YY
Sbjct: 368 LLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGYYKQG- 426
Query: 417 GKRV 420
GK+V
Sbjct: 427 GKKV 430
|
|
| TAIR|locus:2126846 GAE3 "UDP-D-glucuronate 4-epimerase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1464 (520.4 bits), Expect = 5.4e-150, P = 5.4e-150
Identities = 297/428 (69%), Positives = 334/428 (78%)
Query: 10 PSTPGKFKIERSNTMNRQFHRCF--TSTSTMFLWALFLVALTASYLSFQSFVDSG----S 63
PSTPGKFK FHR +S + + W+L V L + ++S V S S
Sbjct: 11 PSTPGKFK--------PYFHRTRWQSSVAKLAFWSLVFVGLIFIFF-YRSPVSSNPADPS 61
Query: 64 RYF--SASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLD 121
R + SWGG WEK VRSSA++ G SVLVTGAAGFVGTHVS ALK+RGDGV+GLD
Sbjct: 62 RRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLD 121
Query: 122 NFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYA 181
NFN+YYDPSLK+AR+ALL GVFV+EGDINDA LL KLF+ V FTHVMHLAAQAGVRYA
Sbjct: 122 NFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYA 181
Query: 182 MQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASL 241
M+NP SYVHSNIAG V LLE CKSANPQP+IVWASSSSVYGLN VPFSE DRTDQPASL
Sbjct: 182 MENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 241
Query: 242 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRG 301
YAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G
Sbjct: 242 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEG 301
Query: 302 KNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKLV 351
NH +ARDFTYIDDIVKGCLG+LDT+ G A R+FNLGNTSPV V LV
Sbjct: 302 VNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLV 361
Query: 352 NILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
ILER LKVKAK+N++++P NGDV FTHANISSAQ+E GY+PTTDLQTGLKKF RWYL Y
Sbjct: 362 TILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGY 421
Query: 412 YGYNRGKR 419
Y N GK+
Sbjct: 422 Y--NGGKK 427
|
|
| TAIR|locus:2050921 GAE4 "UDP-D-glucuronate 4-epimerase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
Identities = 287/421 (68%), Positives = 335/421 (79%)
Query: 10 PSTPGKFKIERSNTMNR-QFHRCFTSTSTMFLWALFLVAL----TASYLSFQSFVDSGSR 64
PS+PGKFK+E+S+ ++R +F T + + L L++L + ++ S D R
Sbjct: 8 PSSPGKFKMEKSSYLHRLRFQSSLTKFAFFSFFLLCLISLLFLRSPPSINPSSPSDPSRR 67
Query: 65 YFSAS-WGGIQWEKHVRSSAQIHRS--GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLD 121
+ +GG WEK +RSSA+I S G++VLVTGAAGFVGTHVS ALK+RGDGV+GLD
Sbjct: 68 SLRTNTYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLD 127
Query: 122 NFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYA 181
NFN+YYDPSLK+AR+ALL G+F++EGDIND +LL KLF V+FTHVMHLAAQAGVRYA
Sbjct: 128 NFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYA 187
Query: 182 MQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASL 241
M+NP SYVHSNIAG V LLE CKS NPQP+IVWASSSSVYGLN VPFSE D+TDQPASL
Sbjct: 188 MENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDKTDQPASL 247
Query: 242 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRG 301
YAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK I+++
Sbjct: 248 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFES 307
Query: 302 KNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKLV 351
NH +ARDFTYIDDIVKGCL +LDT+ GPA R+FNLGNTSPV V LV
Sbjct: 308 ANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLV 367
Query: 352 NILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
ILER LKVKAKKN+I+MP NGDVPFTHANIS AQ+E GY+PTTDLQTGLKKFVRWYLSY
Sbjct: 368 RILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSY 427
Query: 412 Y 412
Y
Sbjct: 428 Y 428
|
|
| TAIR|locus:2139134 GAE5 "UDP-D-glucuronate 4-epimerase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
Identities = 278/427 (65%), Positives = 325/427 (76%)
Query: 10 PSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYL--------SFQSFVDS 61
PSTPGK+K ++ H + S + LWA +AL YL S ++ DS
Sbjct: 8 PSTPGKYKTDKVPPYGILHHHRYLRLSKLTLWASLFLALFLFYLVLSPPPSPSRRNLNDS 67
Query: 62 GSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLD 121
S +A +GG WEK VR SA+ GG++VLVTGA+GFVGTHVS+AL++RGDGV+GLD
Sbjct: 68 SS-ISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLD 126
Query: 122 NFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYA 181
NFN YYDP LK+AR+ LL GVFV+EGDINDA LL KLFD V FTHVMHLAAQAGVRYA
Sbjct: 127 NFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYA 186
Query: 182 MQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASL 241
MQNP SYV+SNIAG V LLE KSANPQP+IVWASSSSVYGLN VPFSE DRTDQPASL
Sbjct: 187 MQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASL 246
Query: 242 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRG 301
YAATKKAGE IAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK ITV+
Sbjct: 247 YAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFES 306
Query: 302 KNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKLV 351
+ +ARDFTYIDDIVKGCLG+LDT+ GPA +RI+NLGNTSPV V KLV
Sbjct: 307 PDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLV 366
Query: 352 NILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
ILE+ LK+KAKK ++ +P NGDV FTHANI+ AQ E GY+P DL+TGLKKFV+WY+ +
Sbjct: 367 TILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMGF 426
Query: 412 YGYNRGK 418
Y ++ K
Sbjct: 427 YTGSKKK 433
|
|
| TAIR|locus:2076066 GAE6 "UDP-D-glucuronate 4-epimerase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
Identities = 255/380 (67%), Positives = 303/380 (79%)
Query: 47 ALTASYLSFQSFVDSG---SRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVG 103
A A +L +SF+ +G S S+S GG WEK VR S+ R G+SVLVTGAAGFVG
Sbjct: 65 AAAAHHLHRRSFLSTGLFSSSSSSSSIGGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVG 124
Query: 104 THVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163
+H SLAL+KRGDGV+G DNFN+YYDPSLK+AR+ LL VF++EGD+ND LL KLFD
Sbjct: 125 SHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEGDLNDGPLLRKLFDV 184
Query: 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGL 223
V FTH++HLAAQAGVRYAM+NP SY+ SNIAG V LLE K+ANPQP+IVWASSSSVYGL
Sbjct: 185 VPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQPAIVWASSSSVYGL 244
Query: 224 NENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAY 283
N PFSE RTDQPASLYAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAY
Sbjct: 245 NTENPFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAY 304
Query: 284 FSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA----------GPAP 333
F FT++IL GK I +YR +++ ++ARDFTYIDDIVKGC+G+LDT+ G A
Sbjct: 305 FFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQ 364
Query: 334 YRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRP 393
R++NLGNTSPV V +LV+ILE L KAKK++I+MP NGDVP+THAN+S A K+FGY+P
Sbjct: 365 LRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKP 424
Query: 394 TTDLQTGLKKFVRWYLSYYG 413
TTDL GL+KFV+WY+ YYG
Sbjct: 425 TTDLAAGLRKFVKWYVGYYG 444
|
|
| TIGR_CMR|CBU_0844 CBU_0844 "capsular polysaccharide biosynthesis protein I" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 171/338 (50%), Positives = 222/338 (65%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG- 149
M LVTG AGF+G H++ L RGD ++GLDN N+YYD +LK+AR A L F
Sbjct: 6 MRTLVTGCAGFIGFHLTKRLLARGDHILGLDNLNDYYDVNLKEARLAQLKEFPHFSFHKL 65
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
D+ D + + LF F V+HLAAQAGVRY++ NP++YV SN+ G +LE C+ + +
Sbjct: 66 DLADRQGMTDLFQKHLFDTVVHLAAQAGVRYSLTNPYAYVDSNLVGFAHILEGCRHQSVK 125
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
+V+ASSSSVYG NE PFSE+D D P +LYAA+KKA E +AH+Y H++ L TGLRF
Sbjct: 126 -HLVFASSSSVYGANEKYPFSESDNVDHPIALYAASKKANELMAHSYAHLFQLPCTGLRF 184
Query: 270 FTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329
FTVYGPWGRPDMA F FTRN+L KPI VY NH ++RDFTYIDDIV G L +LD
Sbjct: 185 FTVYGPWGRPDMALFKFTRNLLADKPIDVY---NHGKMSRDFTYIDDIVDGILLTLDHPP 241
Query: 330 GP---------------APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGD 374
P APYRI+N+G+ +P+ + + ILE+ L KA KN + + GD
Sbjct: 242 EPNSAYSANQPNPAKSNAPYRIYNIGSNNPILLTNFIAILEKTLNKKAIKNFLPLQP-GD 300
Query: 375 VPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
VP T+A++S +K+F YRP T LQ G+K FV WYL Y+
Sbjct: 301 VPETYADVSQLEKDFQYRPRTPLQKGVKNFVEWYLQYF 338
|
|
| UNIPROTKB|Q8E8H8 wcvA "UDP-glucuronate 4-epimerase WcvA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 172/338 (50%), Positives = 216/338 (63%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVF-VIEG 149
M LVTGAAGF+G +VS L G VVG+DN N+YYD +LK AR A L F I+
Sbjct: 1 MKYLVTGAAGFIGANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKL 60
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
D+ D + +AKLF F V+HLAAQAGVRY++ NP +Y SN+ G +T+LE C+ +
Sbjct: 61 DLADREGIAKLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIE 120
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
+V+ASSSSVYGLN+ +PFS D D P SLYAATKKA E ++HTY+H+Y L TGLRF
Sbjct: 121 -HLVYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRF 179
Query: 270 FTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329
FTVYGPWGRPDMA F FT+ IL G+ I VY NH DL+RDFTYIDDIV+G + D
Sbjct: 180 FTVYGPWGRPDMALFKFTKAILAGETIDVY---NHGDLSRDFTYIDDIVEGIIRVQDKPP 236
Query: 330 GP---------------APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGD 374
P APYR+FN+GN SPV + + LER L ++AKK + M GD
Sbjct: 237 SPTPDWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALERALGIEAKKQFLPMQP-GD 295
Query: 375 VPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
V T A+ K GY+ D+ TG+ KFV WY ++Y
Sbjct: 296 VHATWADTEDLFKAVGYKSQVDIDTGVAKFVDWYRNFY 333
|
|
| TIGR_CMR|SO_4686 SO_4686 "NAD dependent epimerase/dehydratase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 172/338 (50%), Positives = 216/338 (63%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVF-VIEG 149
M LVTGAAGF+G +VS L G VVG+DN N+YYD +LK AR A L F I+
Sbjct: 1 MKYLVTGAAGFIGANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKL 60
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
D+ D + +AKLF F V+HLAAQAGVRY++ NP +Y SN+ G +T+LE C+ +
Sbjct: 61 DLADREGIAKLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIE 120
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
+V+ASSSSVYGLN+ +PFS D D P SLYAATKKA E ++HTY+H+Y L TGLRF
Sbjct: 121 -HLVYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRF 179
Query: 270 FTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329
FTVYGPWGRPDMA F FT+ IL G+ I VY NH DL+RDFTYIDDIV+G + D
Sbjct: 180 FTVYGPWGRPDMALFKFTKAILAGETIDVY---NHGDLSRDFTYIDDIVEGIIRVQDKPP 236
Query: 330 GP---------------APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGD 374
P APYR+FN+GN SPV + + LER L ++AKK + M GD
Sbjct: 237 SPTPDWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALERALGIEAKKQFLPMQP-GD 295
Query: 375 VPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
V T A+ K GY+ D+ TG+ KFV WY ++Y
Sbjct: 296 VHATWADTEDLFKAVGYKSQVDIDTGVAKFVDWYRNFY 333
|
|
| TIGR_CMR|GSU_2241 GSU_2241 "capsular polysaccharide biosynthesis protein I" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 161/338 (47%), Positives = 217/338 (64%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKAR-KALLNNHGVFVIEGD 150
S+LVTGAAGF+G H++ L RGD VVGLDN N+YYD +LK R + L G +
Sbjct: 3 SILVTGAAGFIGFHLTKRLLDRGDRVVGLDNLNDYYDVNLKLDRLRQLEGREGFSFVRTS 62
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D L LF F V++LAAQAGVRY++ NPH+YV SN+ G + +LE C+ +
Sbjct: 63 LADRPALEDLFAGQRFDVVVNLAAQAGVRYSITNPHAYVDSNLVGFINILEGCRHHGVK- 121
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+V+ASSSSVYG N +PFS D P SLYAATKKA E +AHTY+ +YGL TGLRFF
Sbjct: 122 HLVYASSSSVYGANTAMPFSIHHNVDHPVSLYAATKKANELMAHTYSSLYGLPTTGLRFF 181
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330
TVYGPWGRPDMA F FT+ IL+G+PI VY N + RDFTY+DDIV+G +D +
Sbjct: 182 TVYGPWGRPDMALFLFTKAILEGRPIDVY---NFGKMQRDFTYVDDIVEGVTRVMDRTPE 238
Query: 331 P---------------APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDV 375
P APYRI+N+GN +PV + + +E++L + A+KN++ + GDV
Sbjct: 239 PNPAWSGARPDPGTSYAPYRIYNIGNNNPVELLAFIEAIEQNLGITAQKNLLPLQA-GDV 297
Query: 376 PFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYG 413
P T+A++ + G++P T + G+++FV WY YYG
Sbjct: 298 PATYADVDDLMNDVGFKPATPIGEGIERFVEWYRGYYG 335
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9M0B6 | GAE1_ARATH | 5, ., 1, ., 3, ., 6 | 0.8517 | 0.9786 | 0.9603 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 421 | |||
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 1e-174 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 1e-77 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 2e-70 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 7e-55 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 5e-53 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 4e-45 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 1e-44 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 8e-43 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 9e-43 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 2e-40 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 2e-38 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 1e-37 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 8e-37 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 5e-35 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 3e-32 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 7e-32 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 3e-31 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 3e-30 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 1e-28 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 1e-27 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 1e-26 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 1e-26 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 2e-26 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 4e-26 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 1e-25 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 6e-23 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 5e-22 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 3e-20 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 3e-20 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 3e-19 | |
| cd05261 | 248 | cd05261, CAPF_like_SDR_e, capsular polysaccharide | 8e-19 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 1e-18 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 1e-18 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 2e-18 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 1e-17 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 7e-17 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 4e-16 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 7e-16 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 4e-15 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 9e-15 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 4e-14 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 5e-14 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 1e-13 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 4e-12 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 5e-12 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 2e-11 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 5e-11 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 1e-10 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 2e-10 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 2e-10 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 6e-10 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 6e-10 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 9e-10 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 1e-09 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 2e-09 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 7e-09 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 1e-08 | |
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 2e-08 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 2e-08 | |
| PLN02725 | 306 | PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5- | 3e-08 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 3e-07 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 5e-07 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 1e-06 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 3e-06 | |
| cd05266 | 251 | cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | 3e-06 | |
| COG1090 | 297 | COG1090, COG1090, Predicted nucleoside-diphosphate | 5e-06 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 6e-06 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 1e-05 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 2e-05 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 4e-05 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 8e-05 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 1e-04 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 2e-04 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 2e-04 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 3e-04 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 0.001 | |
| COG0604 | 326 | COG0604, Qor, NADPH:quinone reductase and related | 0.001 | |
| pfam05368 | 232 | pfam05368, NmrA, NmrA-like family | 0.002 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 0.004 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 0.004 | |
| COG0569 | 225 | COG0569, TrkA, K+ transport systems, NAD-binding c | 0.004 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 488 bits (1259), Expect = e-174
Identities = 183/337 (54%), Positives = 233/337 (69%), Gaps = 21/337 (6%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFV-IEG 149
M +LVTGAAGF+G HV+ L +RGD VVG+DN N+YYD LK+AR LL G F ++G
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLERGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVKG 60
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
D+ D + L +LF F V+HLAAQAGVRY+++NPH+YV SNI G + LLE C+ +
Sbjct: 61 DLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGVK 120
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
+V+ASSSSVYGLN +PFSE DR D P SLYAATKKA E +AHTY+H+YG+ TGLRF
Sbjct: 121 -HLVYASSSSVYGLNTKMPFSEDDRVDHPISLYAATKKANELMAHTYSHLYGIPTTGLRF 179
Query: 270 FTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT-- 327
FTVYGPWGRPDMA F FT+ IL+GKPI V+ N +++RDFTYIDDIV+G + +LDT
Sbjct: 180 FTVYGPWGRPDMALFLFTKAILEGKPIDVF---NDGNMSRDFTYIDDIVEGVVRALDTPA 236
Query: 328 -------------SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGD 374
S APYR++N+GN SPV + + LE+ L KAKKN + M GD
Sbjct: 237 KPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKALGKKAKKNYLPMQ-KGD 295
Query: 375 VPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
VP T+A+IS Q+ GY+P T L+ G+K+FV WY
Sbjct: 296 VPETYADISKLQRLLGYKPKTSLEEGVKRFVEWYKEN 332
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 1e-77
Identities = 109/320 (34%), Positives = 162/320 (50%), Gaps = 21/320 (6%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
VLVTG AGF+G+H+ L +RG V+ LDN + +L + + + IEGDI
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEVKPNVK------FIEGDIR 55
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D +L+ F+ V +V H AAQA V ++++P N+ G + LLEA + A +
Sbjct: 56 DDELVEFAFEGV--DYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVK-RF 112
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272
V+ASSSSVYG +P E P S YA +K AGE + +YGL LR+F V
Sbjct: 113 VYASSSSVYGDPPYLPKDEDHPP-NPLSPYAVSKYAGELYCQVFARLYGLPTVSLRYFNV 171
Query: 273 YGPWGRPDMAY---FS-FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328
YGP P+ Y F L+G+P T+Y RDFTY++D+V+ L +
Sbjct: 172 YGPRQDPNGGYAAVIPIFIERALKGEPPTIYGDGEQT---RDFTYVEDVVEANLLAATAG 228
Query: 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKE 388
AG ++N+G +V +L ++ L + + P GDV + A+IS A+K
Sbjct: 229 AGG---EVYNIGTGKRTSVNELAELIREILGKELEPVYAP-PRPGDVRHSLADISKAKKL 284
Query: 389 FGYRPTTDLQTGLKKFVRWY 408
G+ P + GL+ V W+
Sbjct: 285 LGWEPKVSFEEGLRLTVEWF 304
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 2e-70
Identities = 106/330 (32%), Positives = 159/330 (48%), Gaps = 26/330 (7%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M +LVTG AGF+G+H+ L G V GLD + DP GV + D
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDP----------LLSGVEFVVLD 50
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAM-QNPHSYVHSNIAGLVTLLEACKSANPQ 209
+ D L+ +L V V+HLAAQ+ V + +P ++ N+ G + LLEA ++A +
Sbjct: 51 LTDRDLVDELAKGVP-DAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVK 109
Query: 210 PSIVWASS-SSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
V+ASS S VYG +P E +P + Y +K A E++ Y +YGL + LR
Sbjct: 110 R-FVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILR 168
Query: 269 FFTVYGPWGRPDMA---YFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325
F VYGP +PD++ +F R +L+G+PI V G RDF Y+DD+ L +L
Sbjct: 169 PFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDG--SQTRDFVYVDDVADALLLAL 226
Query: 326 DTSAGPAPYRIFNLGN-TSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTH--ANI 382
+ G +FN+G+ T+ +TV +L + + KA V G +I
Sbjct: 227 ENPDG----GVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDI 282
Query: 383 SSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
S A+ G+ P L+ GL + W L
Sbjct: 283 SKARAALGWEPKVSLEEGLADTLEWLLKKL 312
|
Length = 314 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 7e-55
Identities = 81/250 (32%), Positives = 114/250 (45%), Gaps = 52/250 (20%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LVTG AGF+G+H+ L +RG VV +D
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL----------------------------- 31
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
V+HLAA GV + NP +N+ G + LLEA + A +
Sbjct: 32 --------------DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKR-F 76
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272
V+ASS+SVYG E +P E +P S Y +K A E + +Y YGL + LR V
Sbjct: 77 VYASSASVYGSPEGLPEEEETPP-RPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANV 135
Query: 273 YGPWGRP--DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330
YGP RP D F R L+GKP+TV+ G N RDF ++DD+V+ L +L+
Sbjct: 136 YGPGQRPRLDGVVNDFIRRALEGKPLTVFGGGNQT---RDFIHVDDVVRAILHALEN--P 190
Query: 331 PAPYRIFNLG 340
++N+G
Sbjct: 191 LEGGGVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 5e-53
Identities = 86/251 (34%), Positives = 122/251 (48%), Gaps = 21/251 (8%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LVTG GF+G+H+ L + G V+ L ++ R LN + EGD+
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVL----------GRRRRSESLNTGRIRFHEGDLT 50
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D L +L V V+HLAAQ+GV + ++P ++ +N+ G + LLEA + A
Sbjct: 51 DPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGV-KRF 109
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272
V+ASSS VYG + P +E P S YAA K A E + Y YGL LR F V
Sbjct: 110 VFASSSEVYGDVADPPITEDTPLG-PLSPYAAAKLAAERLVEAYARAYGLRAVILRLFNV 168
Query: 273 YGPW---GRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329
YGP + R IL+GKPI + RDF Y+DD+ + L +L+
Sbjct: 169 YGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQR---RDFLYVDDVARAILLALEH-- 223
Query: 330 GPAPYRIFNLG 340
P I+N+G
Sbjct: 224 -PDGGEIYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 4e-45
Identities = 92/342 (26%), Positives = 145/342 (42%), Gaps = 45/342 (13%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG AG++G+H L K G VV LDN +N + ALL F EGD
Sbjct: 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSN-------GHKIALLKLQFKFY-EGD 52
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D LL +F+ V+H AA V ++QNP Y +N+ G + L+EA +
Sbjct: 53 LLDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK- 111
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+++S+++VYG P SE P + Y +K EEI + LR+F
Sbjct: 112 KFIFSSTAAVYGEPTTSPISETSPLA-PINPYGRSKLMSEEILRDAAKANPFKVVILRYF 170
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPIT--------VYRGKN-HVDL------------AR 309
V G A + T GK + + R
Sbjct: 171 NVAG-------ACPD-GTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIR 222
Query: 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM 369
D+ ++DD+ + +L IFNLG+ + +V +++ + KV + +E+
Sbjct: 223 DYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAK---KVTGRDIPVEI 279
Query: 370 PGN--GDVPFTHANISSAQKEFGYRPT-TDLQTGLKKFVRWY 408
GD A+ S A++ G++PT DL+ +K W+
Sbjct: 280 APRRAGDPAILVADSSKARQILGWQPTYDDLEDIIKDAWDWH 321
|
Length = 329 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-44
Identities = 96/342 (28%), Positives = 152/342 (44%), Gaps = 47/342 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
VLVTG AG++G+H + L + G VV LDN +N ++A + F EGDI
Sbjct: 2 VLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSN----GHREALPRIEKIRIEF-YEGDIR 56
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D L K+F V+H AA V ++Q P Y +N+ G + LLEA ++ + +
Sbjct: 57 DRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGVK-NF 115
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272
V++SS++VYG E VP +E P + Y TK E+I GL+ LR+F
Sbjct: 116 VFSSSAAVYGEPETVPITEEAPL-NPTNPYGRTKLMVEQILRDLAKAPGLNYVILRYFNP 174
Query: 273 YGPWGRPDMAYFSFT------------RNILQ---GK--PITVYRGKNH-------VDLA 308
G A+ S +LQ G+ + ++ G ++ V
Sbjct: 175 AG-------AHPSGLIGEDPQIPNNLIPYVLQVALGRREKLAIF-GDDYPTPDGTCV--- 223
Query: 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE 368
RD+ ++ D+ + +L+ I+NLG +V ++V E KV K E
Sbjct: 224 RDYIHVVDLADAHVLALEKLENGGGSEIYNLGTGRGYSVLEVVEAFE---KVSGKPIPYE 280
Query: 369 MPGN--GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+ GD A+ S A++E G++P DL+ + W
Sbjct: 281 IAPRRAGDPASLVADPSKAREELGWKPKRDLEDMCEDAWNWQ 322
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 8e-43
Identities = 98/319 (30%), Positives = 149/319 (46%), Gaps = 23/319 (7%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
VL+ G GF+G+H+ AL + G V D Y+ L GV I+GD
Sbjct: 1 RVLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYE----------LPLGGVDYIKGDY 50
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
+ L + V+HLA+ + +NP + +N+A V LLEAC +A
Sbjct: 51 ENRADLESALVGIDT--VIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKI 108
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
I +S +VYG+ E +P SE+D T P S Y +K A E+ Y ++YGL T LR
Sbjct: 109 IFASSGGTVYGVPEQLPISESDPTL-PISSYGISKLAIEKYLRLYQYLYGLDYTVLRISN 167
Query: 272 VYGPWGRPDM---AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328
YGP RPD IL+G+PI ++ G RD+ YIDD+V+ + L +
Sbjct: 168 PYGPGQRPDGKQGVIPIALNKILRGEPIEIW-GDGES--IRDYIYIDDLVEALMALLRSK 224
Query: 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKE 388
+FN+G+ ++ +L+ +E+ + DVP +IS A+ E
Sbjct: 225 ---GLEEVFNIGSGIGYSLAELIAEIEKVTGRSVQVIYTPARTT-DVPKIVLDISRARAE 280
Query: 389 FGYRPTTDLQTGLKKFVRW 407
G+ P L+ GL+K +W
Sbjct: 281 LGWSPKISLEDGLEKTWQW 299
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 9e-43
Identities = 95/331 (28%), Positives = 154/331 (46%), Gaps = 32/331 (9%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG---VFVIE 148
+VLVTGA GF+G+H++ L + G V LD +N+ LL+N I
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNS-------FNSWGLLDNAVHDRFHFIS 53
Query: 149 GDINDAKLLAKLFDAVAFTH-VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
GD+ DA + L V V HLAA + Y+ P SYV +N+ G + +LEA
Sbjct: 54 GDVRDASEVEYL---VKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLY 110
Query: 208 PQPSIVWASSSSVYGLNENVPFSEAD---RTDQPASLYAATKKAGEEIAHTYNHIYGLSI 264
+ +V S+S VYG ++VP E ++P S Y+A+K+ + +A++Y +GL +
Sbjct: 111 RKR-VVHTSTSEVYGTAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPV 169
Query: 265 TGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA--RDFTYIDDIVKGCL 322
T +R F YGP R + I+ + I N D + RDF ++ D +G +
Sbjct: 170 TIIRPFNTYGP--RQSA--RAVIPTIISQRAIGQRLI-NLGDGSPTRDFNFVKDTARGFI 224
Query: 323 GSLDTSAGPAPYRIFNLGNTSPVTV-PKLVNILERHLKVKAKKNVIEM----PGNGDVPF 377
LD A A I N G+ +++ V ++ L + PG +V
Sbjct: 225 DILD--AIEAVGEIINNGSGEEISIGNPAVELIVEELGEMVLIVYDDHREYRPGYSEVER 282
Query: 378 THANISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+I A++ G+ P L+ GL++ + W+
Sbjct: 283 RIPDIRKAKRLLGWEPKYSLRDGLRETIEWF 313
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 2e-40
Identities = 96/328 (29%), Positives = 162/328 (49%), Gaps = 24/328 (7%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKARKALLNNHGVFVIE 148
M +LVTG AGF+G++ L + ++ LD Y +L+ + ++ ++
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLT--YAGNLENLED-VSSSPRYRFVK 57
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
GDI DA+L+ +LF+ V+H AA++ V ++ +P ++ +N+ G TLLEA +
Sbjct: 58 GDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTNVLGTYTLLEAARKYGV 117
Query: 209 QPSIVWASSSSVYG-LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
+ V S+ VYG L ++ F+E P S Y+A+K A + + Y+ YGL +
Sbjct: 118 K-RFVHISTDEVYGDLLDDGEFTETSPLA-PTSPYSASKAAADLLVRAYHRTYGLPVVIT 175
Query: 268 RFFTVYGPWGRPDMAYFSFTRNILQGKPITVY-RGKNHVDLARDFTYIDDIVKGCLGSLD 326
R YGP+ P+ F N L GKP+ +Y G N RD+ Y++D + ++
Sbjct: 176 RCSNNYGPYQFPEKLIPLFILNALDGKPLPIYGDGLN----VRDWLYVEDHARA----IE 227
Query: 327 T--SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK--KNVIEMPGNGDVPFTHANI 382
G I+N+G + +T +LV ++ L V + PG+ D + +
Sbjct: 228 LVLEKGR-VGEIYNIGGGNELTNLELVKLILELLGKDESLITYVKDRPGH-DRRYA-IDS 284
Query: 383 SSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
S ++E G+RP + GL+K VRWYL
Sbjct: 285 SKIRRELGWRPKVSFEEGLRKTVRWYLE 312
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-38
Identities = 98/339 (28%), Positives = 154/339 (45%), Gaps = 40/339 (11%)
Query: 91 MSVLVTGAAGFVGTH-VSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIE 148
M +LVTG AGF+G++ V L K D VV LD Y + + ++ ++
Sbjct: 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLT--Y-AGNLENLADVEDSPRYRFVQ 57
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
GDI D +L+ +LF V+H AA++ V ++ P ++ +N+ G TLLEA +
Sbjct: 58 GDICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWG 117
Query: 209 QPSIVWASSSSVYG-LNENVP-FSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITG 266
+ S+ VYG L + F+E + P+S Y+A+K A + + Y YGL T
Sbjct: 118 KFRFHHISTDEVYGDLGLDDDAFTETTPYN-PSSPYSASKAASDLLVRAYVRTYGLPATI 176
Query: 267 LRFFTVYGPWGRPDMAYFSFTRNILQGKPITVY-RGKNHVDLARDFTYIDD--------I 317
R YGP+ P+ N L GKP+ VY G RD+ Y++D +
Sbjct: 177 TRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQ----IRDWLYVEDHCRAIDLVL 232
Query: 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKN------VIEMPG 371
KG +G +N+G + T ++V + L V + PG
Sbjct: 233 TKGKIG-----------ETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPG 281
Query: 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
+ D + + S ++E G+RP +TGL+K V WYL
Sbjct: 282 H-DRRYA-IDASKIKRELGWRPQETFETGLRKTVDWYLD 318
|
Length = 340 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-37
Identities = 89/350 (25%), Positives = 148/350 (42%), Gaps = 45/350 (12%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY----DPSLKKARKALLNNHGVFV 146
M VL+TG AGF+G++++ K+G V+G DN LK R+ GV
Sbjct: 1 MRVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLAWLKANREDG----GVRF 56
Query: 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
+ GDI + L LF+ + ++H AAQ V + +P +N G + +LEA +
Sbjct: 57 VHGDIRNRNDLEDLFEDIDL--IIHTAAQPSVTTSASSPRLDFETNALGTLNVLEAARQH 114
Query: 207 NPQPSIVWASSSSVYGLNEN-----------VP---------FSEADRTDQPASLYAATK 246
P ++ S++ VYG N SE+ D SLY A+K
Sbjct: 115 APNAPFIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGASK 174
Query: 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPW--GRPDMAYFS-FTRNILQGKPITVY-RGK 302
A ++ Y I+GL R + GP G D + + F + + GKP+T++ G
Sbjct: 175 GAADQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLKCAVTGKPLTIFGYGG 234
Query: 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT--SPVTVPKLVNILERHLKV 360
V RD + D+V L +FN+G + V++ +L+ + E
Sbjct: 235 KQV---RDVLHSADLVNLYLRQFQNPDRRKG-EVFNIGGGRENSVSLLELIALCEEIT-- 288
Query: 361 KAKKNVIEMPGN--GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+K N GD + ++I +++ G++P D + L + W
Sbjct: 289 -GRKMESYKDENRPGDQIWYISDIRKIKEKPGWKPERDPREILAEIYAWI 337
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 8e-37
Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 30/334 (8%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LVTG AG++G+H L + G VV LDN +N ++A V +EGD+
Sbjct: 2 ILVTGGAGYIGSHTVRQLLESGHEVVILDNLSN----GSREALPRGERITPVTFVEGDLR 57
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D +LL +LF+ V+H A V ++Q P Y +N+ G + LLEA + A +
Sbjct: 58 DRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKK-F 116
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI-YGLSITGLRFFT 271
+++SS++VYG ++P SE P + Y +K E+I S LR+F
Sbjct: 117 IFSSSAAVYGEPSSIPISEDSPL-GPINPYGRSKLMSEQILRDLQKADPDWSYVILRYFN 175
Query: 272 VYG--PWGRPDMAYFSFTRNIL---------QGKPITVYRGKNH--VD--LARDFTYIDD 316
V G P G T +++ + +T++ G ++ D RD+ ++ D
Sbjct: 176 VAGAHPSGDIGEDPPGIT-HLIPYACQVAVGKRDKLTIF-GTDYPTPDGTCVRDYIHVMD 233
Query: 317 IVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKK-NVIEMPGN-GD 374
+ L +L+ ++NLG +V +++ + KV K V P GD
Sbjct: 234 LADAHLAALEYLLNGGGSHVYNLGYGQGFSVLEVIEAFK---KVSGKDFPVELAPRRPGD 290
Query: 375 VPFTHANISSAQKEFGYRPT-TDLQTGLKKFVRW 407
A+ S ++E G++P TDL+ +K RW
Sbjct: 291 PASLVADASKIRRELGWQPKYTDLEEIIKDAWRW 324
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 5e-35
Identities = 95/324 (29%), Positives = 155/324 (47%), Gaps = 19/324 (5%)
Query: 92 SVLVTGAAGFVGTH-VSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
+LVTG AGF+G++ V L + D V+ LD Y +L+ N FV +G
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLT--YAGNLENLADLEDNPRYRFV-KG 57
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
DI D +L+++LF V+H AA++ V ++ P +++ +N+ G TLLEA + +
Sbjct: 58 DIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHE 117
Query: 210 PSIVWASSSSVYG-LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
S+ VYG L + F+E P+S Y+A+K A + + Y+ YGL R
Sbjct: 118 FRFHHISTDEVYGDLEKGDAFTETTPL-APSSPYSASKAASDHLVRAYHRTYGLPALITR 176
Query: 269 FFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328
YGP+ P+ N L GKP+ VY V RD+ Y++D + L+
Sbjct: 177 CSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQV---RDWLYVEDHCRAIYLVLEKG 233
Query: 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK---KNVIEMPGNGDVPFTHANISSA 385
+N+G + T ++V + L K + +V + PG+ D + + S
Sbjct: 234 ---RVGETYNIGGGNERTNLEVVETILELLG-KDEDLITHVEDRPGH-DRRYA-IDASKI 287
Query: 386 QKEFGYRPTTDLQTGLKKFVRWYL 409
++E G+ P + GL+K V+WYL
Sbjct: 288 KRELGWAPKYTFEEGLRKTVQWYL 311
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-32
Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 34/328 (10%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+L+TG AGF+G+H+ L + G V+ +DNF K+ + L+ + I D
Sbjct: 1 KRILITGGAGFLGSHLCDRLLEDGHEVICVDNFFT----GRKRNIEHLIGHPNFEFIRHD 56
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ + L D + HLA A + NP + +N+ G + +L K +
Sbjct: 57 VTEPLYLE--VDQ-----IYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGAR- 108
Query: 211 SIVWASSSSVYGLNENVPFSEADR----TDQPASLYAATKKAGEEIAHTYNHIYGLSITG 266
++ AS+S VYG E P E+ P S Y K+ E + Y+ +G+ +
Sbjct: 109 -VLLASTSEVYGDPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVRI 167
Query: 267 LRFFTVYGPWGRPDMAYF--SFTRNILQGKPITVY-RGKNHVDLARDFTYIDDIVKGC-- 321
R F YGP P+ +F L+G+PITVY G R F Y+ D+V+G
Sbjct: 168 ARIFNTYGPRMHPNDGRVVSNFIVQALRGEPITVYGDGTQ----TRSFQYVSDLVEGLIR 223
Query: 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTH-A 380
L + D GP NLGN T+ +L ++ + L +K ++ +P D P
Sbjct: 224 LMNSDYFGGP-----VNLGNPEEFTILELAELV-KKL-TGSKSEIVFLPLPEDDPKRRRP 276
Query: 381 NISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+IS A++ G+ P L+ GL++ + ++
Sbjct: 277 DISKAKELLGWEPKVPLEEGLRRTIEYF 304
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 7e-32
Identities = 77/333 (23%), Positives = 130/333 (39%), Gaps = 35/333 (10%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLD----NFNNYYDPSLKKARKALLNNHGVFVIE 148
L+TG G G++++ L ++G V G+ +FN + N + +
Sbjct: 2 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNT---DRIDHLYI---NKDRITLHY 55
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
GD+ D+ L + + V + HLAAQ+ V+ + +P N G + LLEA +
Sbjct: 56 GDLTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGL 115
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGL-SITGL 267
ASSS YG + +P SE +P S YA +K + I Y YGL ++ G
Sbjct: 116 DARFYQASSSEEYGKVQELPQSE-TTPFRPRSPYAVSKLYADWITRNYREAYGLFAVNG- 173
Query: 268 RFFTVYGPWGRPDMAYFSFTR-------NILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320
R F GP R + TR I G + G ++D RD+ D V+
Sbjct: 174 RLFNHEGP-RRGET---FVTRKITRQVARIKAGLQPVLKLG--NLDAKRDWGDARDYVEA 227
Query: 321 -CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN---GDVP 376
L + + +V + V + + V P +V
Sbjct: 228 YWLLLQQGEPDD-----YVIATGETHSVREFVELAFEESGLTGDIEVEIDPRYFRPTEVD 282
Query: 377 FTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
+ S A++E G++P + +++ + L
Sbjct: 283 LLLGDPSKAREELGWKPEVSFEELVREMLDADL 315
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-31
Identities = 92/330 (27%), Positives = 164/330 (49%), Gaps = 24/330 (7%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH--GVFVIEGDI 151
L+TG AGF+G+ + L V+GLDNF+ Y +L R ++ I+GDI
Sbjct: 19 LITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDI 78
Query: 152 ---NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
D + K D +V+H AA V ++++P + +NI G + +L A + A+
Sbjct: 79 RKFTDCQKACKNVD-----YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHV 133
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
S +A+SSS YG + ++P E +R +P S YA TK E A + Y + GLR
Sbjct: 134 S-SFTYAASSSTYGDHPDLPKIE-ERIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLR 191
Query: 269 FFTVYGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGS 324
+F V+G P+ AY + + ++L+ +PI + +RDF YI+++++ L S
Sbjct: 192 YFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYI---NGDGSTSRDFCYIENVIQANLLS 248
Query: 325 LDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP-----GNGDVPFTH 379
T+ + +++N+ ++ +L ++ L + + P +GDV +
Sbjct: 249 ATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQ 308
Query: 380 ANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
A+I+ + Y P D++ GLK+ ++WY+
Sbjct: 309 ADITKIKTFLSYEPEFDIKEGLKQTLKWYI 338
|
Length = 348 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-30
Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 53/334 (15%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LVTG AGF+G+H+ L + G+ VV +DN ++ ++ + N ++ D+
Sbjct: 2 ILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSS----GRRENIEPEFENKAFRFVKRDLL 57
Query: 153 D--AKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
D K+ K D V HLAA VR +P + N+ +LEA ++ +
Sbjct: 58 DTADKVAKKDGDT-----VFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVK- 111
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
IV+ASSS+VYG + +P E D P S+Y A+K A E + Y H++G RF
Sbjct: 112 RIVFASSSTVYGEAKVIPTPE-DYPPLPISVYGASKLAAEALISAYAHLFGFQAWIFRFA 170
Query: 271 TVYGPWGRPDMAYFSFTR---------NIL----QGKPITVYRGKNHVDLARDFTYIDDI 317
+ GP + F +L Q K + Y+ D
Sbjct: 171 NIVGP-RSTHGVIYDFINKLKRNPNELEVLGDGRQRKS---------------YLYVSDC 214
Query: 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN----- 372
V L + + S IFNLGN ++V ++ I+ L +K + + G
Sbjct: 215 VDAMLLAWEKS--TEGVNIFNLGNDDTISVNEIAEIVIEELGLKPR---FKYSGGDRGWK 269
Query: 373 GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVR 406
GDVP+ +I K G++P + + ++K VR
Sbjct: 270 GDVPYMRLDIEKL-KALGWKPRYNSEEAVRKTVR 302
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 91/339 (26%), Positives = 146/339 (43%), Gaps = 46/339 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
++VTG AGF+G+++ AL +RG ++ +DN L+ K LN + VI I
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDN--------LRDGHK-FLNLADL-VIADYI 50
Query: 152 NDAKLLAKLFDAVA--FTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK 204
+ L +L + H A + Y M+N + Y LL+ C
Sbjct: 51 DKEDFLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMENNYQYSKR-------LLDWC- 102
Query: 205 SANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLS- 263
A ++ASS++ YG E F E ++P ++Y +K ++ LS
Sbjct: 103 -AEKGIPFIYASSAATYGDGEA-GFREGRELERPLNVYGYSKFLFDQYVRRRVLPEALSA 160
Query: 264 -ITGLRFFTVYGP--WGRPDMAYFSFTRN--ILQGKPITVYRGKNHV---DLARDFTYID 315
+ GLR+F VYGP + + MA +F I G + +++ + RDF Y+
Sbjct: 161 QVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVK 220
Query: 316 DIVKGCLGSLDTSA-GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGD 374
D+V L L+ G IFNLG + L + + + L K I MP
Sbjct: 221 DVVDVNLWLLENGVSG-----IFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALR 275
Query: 375 VP---FTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
FT A+I+ + Y P T L+ G+K +V+W L+
Sbjct: 276 GRYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLLA 314
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 92/333 (27%), Positives = 140/333 (42%), Gaps = 40/333 (12%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
LVTGA GF+G+H++ LK G V G D + + + L D+
Sbjct: 3 ALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDEFHL---------VDLR 53
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYV-HSNIAGLVTLLEACKSANPQPS 211
+ + K + V HV HLAA G +Q+ H+ + ++N +LEA + +
Sbjct: 54 EMENCLKATEGV--DHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVE-R 110
Query: 212 IVWASSSSVYG-----LNENVPFSEADRT-DQPASLYAATKKAGEEIAHTYNHIYGLSIT 265
++ASS+ VY V E D +P Y K A E + YN YG+
Sbjct: 111 FLFASSACVYPEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIETR 170
Query: 266 GLRFFTVYGPWGRPD----MAYFSFTRNILQGK---PITVY-RGKNHVDLARDFTYIDDI 317
+RF +YGP G D A + R + K ++ G R FTYIDD
Sbjct: 171 IVRFHNIYGPRGTWDGGREKAPAAMCRKVATAKDGDRFEIWGDGLQ----TRSFTYIDDC 226
Query: 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE--MPGNGDV 375
V+G L L S P NLG+ V++ +L ++ L K I PG V
Sbjct: 227 VEG-LRRLMESDFGEP---VNLGSDEMVSMNELAEMV---LSFSGKPLEIIHHTPGPQGV 279
Query: 376 PFTHANISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+++ + ++E G+ P T L+ GL+ W
Sbjct: 280 RGRNSDNTLLKEELGWEPNTPLEEGLRITYFWI 312
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 1e-26
Identities = 97/344 (28%), Positives = 151/344 (43%), Gaps = 43/344 (12%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G VV LDN N S+ + L H FV EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNS-KRSVLPVIERLGGKHPTFV-EGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + LL ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+++++SS++VYG +P+ E+ T P S Y +K E+I SI LR+
Sbjct: 118 NLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFTRNILQGKPITVYRGKNHVDLA--------- 308
F G P G P+ M Y I Q + V R + LA
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPY------IAQ---VAVGRRDS---LAIFGNDYPTE 225
Query: 309 -----RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK 363
RD+ ++ D+ G + +++ A I+NLG +V +VN + K
Sbjct: 226 DGTGVRDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACG-KPV 284
Query: 364 KNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 285 NYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
|
Length = 338 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 43/322 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN--NYY---DPSLKKARKALLNNHGVFVI 147
VLVTGA GF+G+H+ AL ++G V +N N + D S + + + V+
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEVKDK------IEVV 54
Query: 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
GDI D + K V HLAA + Y+ P SYV +N+ G + +L+A +
Sbjct: 55 TGDIRDPDSVRKAMKGC--DVVFHLAALIAIPYSYIAPDSYVDTNVTGTLNVLQAARDLG 112
Query: 208 PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
+ +V S+S VYG + VP E Q S Y+A+K +++A ++ + +T +
Sbjct: 113 VE-KVVHTSTSEVYGTAQYVPIDE-KHPLQGQSPYSASKIGADQLALSFYRSFNTPVTII 170
Query: 268 RFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA-----RDFTYIDDIVKG-- 320
R F YGP R R ++ + GK + L RDF Y+ D V+G
Sbjct: 171 RPFNTYGP--RQS------ARAVIPTIITQIASGKRRIKLGSLSPTRDFNYVTDTVRGFI 222
Query: 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM------PGNGD 374
+ D + G + N+G+ +++ V ++ + + + IE P +
Sbjct: 223 AIAESDKTVG----EVINIGSNFEISIGDTVKLIAEIMGSEVE---IETDEERLRPEKSE 275
Query: 375 VPFTHANISSAQKEFGYRPTTD 396
V + S ++ G++P
Sbjct: 276 VERLWCDNSKIKELTGWQPKYS 297
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 87/332 (26%), Positives = 143/332 (43%), Gaps = 45/332 (13%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH-GVFVIEG 149
M VL+TG AG +G+H+ L +RG VV +DNF R+ L +H + V+EG
Sbjct: 1 MKVLITGGAGQIGSHLIEHLLERGHQVVVIDNF--------ATGRREHLPDHPNLTVVEG 52
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVH---SNIAGLVTLLEACKSA 206
I D L+ KLF V+H AA A ++P + +N+ G +++A K A
Sbjct: 53 SIADKALVDKLFGDFKPDAVVHTAA------AYKDPDDWYEDTLTNVVGGANVVQAAKKA 106
Query: 207 NPQPSIVWASSSSVYGLNENVPFSEADR-TDQPASLYAATKKAGEEIAHTYNHIYGLSIT 265
+ +++ ++ YGL D P S YA +K AGE Y + G+
Sbjct: 107 GVK-RLIYFQTALCYGLKPMQQPIRLDHPRAPPGSSYAISKTAGEY----YLELSGVDFV 161
Query: 266 GLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR---GKNH--VDLARDFTYIDDIVKG 320
R V GP RN++ P R GK D RDF ++ D+ +
Sbjct: 162 TFRLANVTGP------------RNVIGPLPTFYQRLKAGKKCFVTDTRRDFVFVKDLARV 209
Query: 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNV-IEMPGNGDVPFTH 379
+LD G + ++ + V++ +L + + L + + V + G DVP
Sbjct: 210 VDKALD---GIRGHGAYHFSSGEDVSIKELFDAVVEALDLPLRPEVEVVELGPDDVPSIL 266
Query: 380 ANISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
+ S ++FG++ T L + + WY +
Sbjct: 267 LDPSRTFQDFGWKEFTPLSETVSAALAWYDKH 298
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 92/348 (26%), Positives = 143/348 (41%), Gaps = 44/348 (12%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVG--LDNFNNYYDPSLKKARKALLNNHGVFVI 147
G VLVTG GF G+ +SL L++ G V+G LD N P+L A L+N
Sbjct: 4 GKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTN---PNL--FELANLDNKISSTR 58
Query: 148 EGDINDAKLLAKLFDAVAFTH---VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACK 204
GDI D L L +A+ V HLAAQ VR + ++P +N+ G V LLEA +
Sbjct: 59 -GDIRD---LNALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIR 114
Query: 205 SANPQPSIVWASSSSVYGLNENV-PFSEADRTDQPASLYAATKKAGEEIAHTYNHIY--- 260
++V +S Y E + E D Y+++K E I +Y + +
Sbjct: 115 ETGSVKAVVNVTSDKCYENKEWGWGYREND-PLGGHDPYSSSKGCAELIISSYRNSFFNP 173
Query: 261 ------GLSITGLRFFTVYG----PWGR--PDMAYFSFTRNILQGKPITVYRGKNHVDLA 308
G++I R V G R PD R G+ + + R N +
Sbjct: 174 ENYGKHGIAIASARAGNVIGGGDWAEDRIVPDC-----IRAFEAGERVII-RNPNAI--- 224
Query: 309 RDFTYIDDIVKG--CLGSLDTSAGPAPYRIFNLGNTSP--VTVPKLVNILERHLKVKAKK 364
R + ++ + + G L G +N G VTV +LV + R+ A+
Sbjct: 225 RPWQHVLEPLSGYLLLAEKLYERGEEYAEAWNFGPDDEDAVTVLELVEAMARYWGEDARW 284
Query: 365 NVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
++ + + S A+ G+RP +L+ L+ V WY +
Sbjct: 285 DLDGNSHPHEANLLKLDCSKAKTMLGWRPRWNLEETLEFTVAWYKEWL 332
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 97/347 (27%), Positives = 155/347 (44%), Gaps = 65/347 (18%)
Query: 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG-- 143
G ++LVTG AG++G+H L L G VV +DN +N + +L++ ++ L + G
Sbjct: 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKE-LAGDLGDN 59
Query: 144 -VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEA 202
VF + D+ D + L K+F + F V+H A V ++ P Y +N+ G + LLE
Sbjct: 60 LVF-HKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEV 118
Query: 203 -----CKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYN 257
CK +V++SS++VYG E VP +E + Y TK EEI +
Sbjct: 119 MAKHGCK------KLVFSSSATVYGQPEEVPCTEEFPL-SATNPYGRTKLFIEEICRDIH 171
Query: 258 HIYGL-SITGLRFFTVYG----------PWGRPD--MAYFSFTRNILQ---GK--PITVY 299
I LR+F G P G P+ M Y + Q G+ +TV+
Sbjct: 172 ASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPY------VQQVAVGRRPELTVF 225
Query: 300 RGKNH-------VDLARDFTYIDDIVKGCLGSL-----DTSAGPAPYRIFNLGNTSPVTV 347
G ++ V RD+ ++ D+ G + +L D G Y NLG +V
Sbjct: 226 -GNDYPTKDGTGV---RDYIHVMDLADGHIAALRKLFTDPDIGCEAY---NLGTGKGTSV 278
Query: 348 PKLVNILERHLKVKAKKNVIEMPGN--GDVPFTHANISSAQKEFGYR 392
++V E K KK +++ GD +A+ A+KE G++
Sbjct: 279 LEMVAAFE---KASGKKIPLKLAPRRPGDAEEVYASTEKAEKELGWK 322
|
Length = 352 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 6e-23
Identities = 80/362 (22%), Positives = 133/362 (36%), Gaps = 70/362 (19%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGL---------DNFNNYYDPSLKKARKALLNNH 142
L+TG G G++++ L ++G V G+ + Y DP LN+
Sbjct: 4 VALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDP--------HLNDP 55
Query: 143 GVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEA 202
+ + GD+ D+ L ++ + V + +LAAQ+ V + + P + G + LLEA
Sbjct: 56 RLHLHYGDLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEA 115
Query: 203 CKSANPQPS-IVWASSSSVYGL------NENVPFSEADRTDQPASLYAATKKAGEEIAHT 255
+ + + AS+S +YGL E PF P S YA K I
Sbjct: 116 IRILGEKKTRFYQASTSELYGLVQEIPQKETTPF-------YPRSPYAVAKLYAYWITVN 168
Query: 256 YNHIYGLSITGLRFFTVYGPWGRPDMAYFSF-TRNIL-------QGKPITVYRGKNHVDL 307
Y YGL F P R + F TR I G +Y G ++D
Sbjct: 169 YRESYGLFACNGILFNHESP-LRGET----FVTRKITRAVARIKLGLQDKLYLG--NLDA 221
Query: 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNI--------LERHLK 359
RD+ + D V+ L + + +V + V + LE
Sbjct: 222 KRDWGHAKDYVEAMWLMLQQEEP----DDYVIATGETHSVREFVELAFEMVGIDLEWEGT 277
Query: 360 VKAKKNVIEMPGN------------GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
+K V G +V + + A+++ G+RP L+ +++ V
Sbjct: 278 GVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELVREMVEA 337
Query: 408 YL 409
L
Sbjct: 338 DL 339
|
Length = 345 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 5e-22
Identities = 84/340 (24%), Positives = 142/340 (41%), Gaps = 46/340 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
++VTG AGF+G+++ AL +RG ++ +DN +N N I I
Sbjct: 2 IIVTGGAGFIGSNLVKALNERGITDILVVDNLSN----------GEKFKNLVGLKIADYI 51
Query: 152 NDAKLLAKLFDAVAFTH---VMHLAA-----QAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
+ + + H A + +Y M N + Y LL C
Sbjct: 52 DKDDFKDWVRKGDENFKIEAIFHQGACSDTTETDGKYMMDNNYQYT-------KELLHYC 104
Query: 204 KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQ--PASLYAATKKAGEEIAHTYNHIYG 261
+ ++ASS++VYG F+E T P ++Y +K ++ A +
Sbjct: 105 LEKKIR--FIYASSAAVYGNGSL-GFAEDIETPNLRPLNVYGYSKLLFDQWARRHGKEVL 161
Query: 262 LSITGLRFFTVYGP--WGRPDMA--YFSFTRNILQGKPITVYRGKNHVDLA---RDFTYI 314
+ GLR+F VYGP + + MA F I G+ + +++ + RDF Y+
Sbjct: 162 SQVVGLRYFNVYGPREYHKGRMASVVFHLFNQIKAGEKVKLFKSSDGYADGEQLRDFVYV 221
Query: 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGD 374
D+VK L L+ P+ IFN+G + L + + L + K I+ P +
Sbjct: 222 KDVVKVNLFFLEN---PSVSGIFNVGTGRARSFNDLASATFKALGKEVKIEYIDFPEDLR 278
Query: 375 ---VPFTHANISSAQKEFGY-RPTTDLQTGLKKFVRWYLS 410
FT A+IS + GY + L+ G+K +V+ YL+
Sbjct: 279 GKYQSFTEADISK-LRAAGYTKEFHSLEEGVKDYVKNYLA 317
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 3e-20
Identities = 95/339 (28%), Positives = 144/339 (42%), Gaps = 47/339 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKAR--KALLNNHGVFVIE 148
+L+TGAAGF+ +HV+ L + +V LD + Y +LK K+ N FV +
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLD--YCSNLKNLNPSKSSPNFK--FV-K 63
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
GDI A L+ L +MH AAQ V + N + +NI G LLEACK
Sbjct: 64 GDIASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ 123
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASL------YAATKKAGEEIAHTYNHIYGL 262
+ S+ VYG + +AD + AS Y+ATK E + Y YGL
Sbjct: 124 IRRFIHVSTDEVYGETD----EDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 179
Query: 263 SITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV---- 318
+ R VYGP P+ F +QGKP+ ++ ++V R + Y +D+
Sbjct: 180 PVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNV---RSYLYCEDVAEAFE 236
Query: 319 ----KGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGD 374
KG +G ++N+G V + + + + +K I+ N
Sbjct: 237 VVLHKGEVG-----------HVYNIGTKKERRVIDVAKDICKLFGLDPEK-SIKFVENR- 283
Query: 375 VPFTHANI---SSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
PF K+ G++ T + GLKK + WY S
Sbjct: 284 -PFNDQRYFLDDQKLKKLGWQERTSWEEGLKKTMEWYTS 321
|
Length = 668 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 3e-20
Identities = 78/351 (22%), Positives = 123/351 (35%), Gaps = 54/351 (15%)
Query: 92 SVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
SVLVTG +GF G + L +R G V D P + + + ++GD
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFD-----IAPPGEALSA--WQHPNIEFLKGD 53
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHS-YVHSNIAGLVTLLEACKSANPQ 209
I D + + V H AA + P Y N+ G +L+AC+ Q
Sbjct: 54 ITDRNDVEQALSGA--DCVFHTAAIVP----LAGPRDLYWEVNVGGTQNVLDACQRCGVQ 107
Query: 210 PSIVWASSSSVYGLNENV--PFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
V+ SSSSV +N+ + +YA TK E I N L L
Sbjct: 108 -KFVYTSSSSVIFGGQNIHNGDETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCAL 166
Query: 268 RFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG--CLGSL 325
R ++GP G + F RG N V DFTY+ ++ +
Sbjct: 167 RPAGIFGP-GDQGLVPILFEWAEKGLVKFVFGRGNNLV----DFTYVHNLAHAHILAAAA 221
Query: 326 DTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG-------------- 371
+ + + + P + +L+ + + L ++ I + G
Sbjct: 222 LVKGKTISGQTYFITDAEPHNMFELLRPVWKALGFGSRP-KIRLSGPLAYCAALLSELVS 280
Query: 372 ------NGDVPFTHA--------NISSAQKEFGYRPTTDLQTGLKKFVRWY 408
PF +I+ AQK+ GY P + GL + + WY
Sbjct: 281 FMLGPYFVFSPFYVRALVTPMYFSIAKAQKDLGYAPRYSNEEGLIETLNWY 331
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 3e-19
Identities = 88/346 (25%), Positives = 146/346 (42%), Gaps = 44/346 (12%)
Query: 93 VLVTGAAGFVGTHV-SLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG-D 150
+L+TG AGF+G+ + + + D VV +D Y +L A + F E D
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLT--YAGNLMSL--APVAQSERFAFEKVD 59
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKS----- 205
I D LA++F VMHLAA++ V ++ P +++ +NI G TLLEA ++
Sbjct: 60 ICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNAL 119
Query: 206 ANPQPSIV---WASSSSVYG--------LNENVPFSEADRTDQPASLYAATKKAGEEIAH 254
+ S S+ VYG E P++ P+S Y+A+K + + +
Sbjct: 120 TEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYA-------PSSPYSASKASSDHLVR 172
Query: 255 TYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314
+ YGL YGP+ P+ N L GKP+ VY + RD+ Y+
Sbjct: 173 AWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQI---RDWLYV 229
Query: 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI------- 367
+D + T Y I + V + + L L + V
Sbjct: 230 EDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLIT 289
Query: 368 ---EMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
+ PG+ D+ + + S +E G+ P ++G++K V+WYL+
Sbjct: 290 FVADRPGH-DLRYA-IDASKIARELGWLPQETFESGMRKTVQWYLA 333
|
Length = 355 |
| >gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 8e-19
Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 62/270 (22%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M +L+TGA GF+G ++ LK++ D +F + +
Sbjct: 1 MKILITGAKGFIGKNLIARLKEQKD--------------------------DDIFFYDRE 34
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
++++L L A + HLA GV ++ + N+ LL+A +P
Sbjct: 35 SDESELDDFLQGADF---IFHLA---GVNRP-KDEAEFESGNVGLTERLLDALTRNGKKP 87
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
I+ +SS +A D P Y +K A EE+ Y G + R
Sbjct: 88 PILLSSSI------------QAAL-DNP---YGKSKLAAEELLQEYARETGAPVYIYRLP 131
Query: 271 TVYGPWGRPDM--AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328
V+G W RP+ A +F NI + PI + + L YIDD+V + L+ +
Sbjct: 132 NVFGKWCRPNYNSAVATFCYNIARDLPIQINDPAAELTLV----YIDDVVDELIQLLEGA 187
Query: 329 AGPA---PYRIFNLGNTSPVTVPKLVNILE 355
+ + VTV ++ +L
Sbjct: 188 PTYSGGFDQVL----PVYKVTVGEIAELLY 213
|
This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 1e-18
Identities = 92/328 (28%), Positives = 140/328 (42%), Gaps = 41/328 (12%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+ ++VTG AGFVG+H+ L RGD V+ +DNF K+ L N +I D
Sbjct: 121 LRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFT----GRKENLVHLFGNPRFELIRHD 176
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ + LL + HLA A + NP + +N+ G + +L K +
Sbjct: 177 VVEPILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAR- 228
Query: 211 SIVWASSSSVYGLNENVPFSEADRTD-QPA---SLYAATKKAGEEIAHTYNHIYGLSITG 266
+ S+S VYG P E + P S Y K+ E +A Y+ G+ +
Sbjct: 229 -FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRI 287
Query: 267 LRFFTVYGPW-----GRPDMAYFSFTRNILQGKPITVY-RGKNHVDLARDFTYIDDIVKG 320
R F YGP GR +F ++ +P+TVY GK R F Y+ D+V G
Sbjct: 288 ARIFNTYGPRMCLDDGR---VVSNFVAQTIRKQPMTVYGDGKQ----TRSFQYVSDLVDG 340
Query: 321 CLGSLDTS-AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM-PGNGDVPFT 378
+ ++ GP FNLGN T+ +L +++ + A IE P D P
Sbjct: 341 LVALMEGEHVGP-----FNLGNPGEFTMLELAEVVKETIDSSA---TIEFKPNTADDPHK 392
Query: 379 HA-NISSAQKEFGYRPTTDLQTGLKKFV 405
+IS A++ + P L+ GL V
Sbjct: 393 RKPDISKAKELLNWEPKISLREGLPLMV 420
|
Length = 436 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 1e-18
Identities = 93/344 (27%), Positives = 153/344 (44%), Gaps = 58/344 (16%)
Query: 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH---GV 144
S + + +TGA GF+ +H++ LK G ++ D KK N H +
Sbjct: 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASD---------WKK------NEHMSEDM 63
Query: 145 FVIEGDINDAKLL---AKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYV-HSNIAGLVTLL 200
F E + D +++ K+ V HV +LAA G +Q+ HS + ++N +L
Sbjct: 64 FCHEFHLVDLRVMENCLKVTKGVD--HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNML 121
Query: 201 EACKSANPQPSIVWASSSSVYG----LNENVPFSEADR-TDQPASLYAATKKAGEEIAHT 255
EA + N +ASS+ +Y L NV E+D +P Y K A EE+
Sbjct: 122 EAAR-INGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKH 180
Query: 256 YNHIYGLSITGLRFFTVYGP---W--GRPDMAYFSFTRNILQGKPITVYRGKNHVDL--- 307
Y +G+ RF +YGP W GR + A +F R K +T + ++
Sbjct: 181 YTKDFGIECRIGRFHNIYGPFGTWKGGR-EKAPAAFCR-----KALT---STDEFEMWGD 231
Query: 308 ---ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKK 364
R FT+ID+ V+G L L S P N+G+ V++ ++ I L + KK
Sbjct: 232 GKQTRSFTFIDECVEGVL-RLTKSDFREP---VNIGSDEMVSMNEMAEIA---LSFENKK 284
Query: 365 NVIE-MPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
I+ +PG V +++ + +++ G+ PT L+ GL+ W
Sbjct: 285 LPIKHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFW 328
|
Length = 370 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 2e-18
Identities = 92/333 (27%), Positives = 144/333 (43%), Gaps = 41/333 (12%)
Query: 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFV 146
+ G+ V+VTG AGFVG+H+ L RGD V+ +DNF K+ +N +
Sbjct: 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFT----GRKENVMHHFSNPNFEL 171
Query: 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
I D+ + LL + HLA A + NP + +N+ G + +L K
Sbjct: 172 IRHDVVEPILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV 224
Query: 207 NPQPSIVWASSSSVYGLNENVPFSEADRTD-QPA---SLYAATKKAGEEIAHTYNHIYGL 262
+ + S+S VYG P E + P S Y K+ E + Y+ +
Sbjct: 225 GAR--FLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANV 282
Query: 263 SITGLRFFTVYGPW-----GRPDMAYFSFTRNILQGKPITVY-RGKNHVDLARDFTYIDD 316
+ R F YGP GR +F L+ +P+TVY GK R F ++ D
Sbjct: 283 EVRIARIFNTYGPRMCIDDGR---VVSNFVAQALRKEPLTVYGDGKQ----TRSFQFVSD 335
Query: 317 IVKGCLGSLDTS-AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM-PGNGD 374
+V+G + ++ GP FNLGN T+ +L +++ + AK IE P D
Sbjct: 336 LVEGLMRLMEGEHVGP-----FNLGNPGEFTMLELAKVVQETIDPNAK---IEFRPNTED 387
Query: 375 VPFTHA-NISSAQKEFGYRPTTDLQTGLKKFVR 406
P +I+ A++ G+ P L+ GL V+
Sbjct: 388 DPHKRKPDITKAKELLGWEPKVSLRQGLPLMVK 420
|
Length = 442 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 1e-17
Identities = 89/344 (25%), Positives = 147/344 (42%), Gaps = 32/344 (9%)
Query: 91 MSVLVTGAAGFVGTH-VSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
M +LVTG AGF+G+ V + D VV +D Y +L+ + VF
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLT--YAGNLESLADVSDSERYVFE-HA 57
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACK----- 204
DI D L ++F VMHLAA++ V ++ P +++ +NI G LLEA +
Sbjct: 58 DICDRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSA 117
Query: 205 -SANPQPSIVW--ASSSSVYG---------LNENVPFSEADRTDQPASLYAATKKAGEEI 252
+ + + + S+ VYG +E +P P+S Y+A+K + + +
Sbjct: 118 LDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHL 177
Query: 253 AHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312
+ YGL YGP+ P+ N L+GKP+ +Y GK D RD+
Sbjct: 178 VRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY-GKG--DQIRDWL 234
Query: 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKN------V 366
Y++D + + Y I + V + L + KA V
Sbjct: 235 YVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYV 294
Query: 367 IEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
+ PG+ D + + S +E G++P ++G++K V WYL+
Sbjct: 295 ADRPGH-DRRYA-IDASKISRELGWKPQETFESGIRKTVEWYLA 336
|
Length = 352 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 7e-17
Identities = 76/346 (21%), Positives = 118/346 (34%), Gaps = 58/346 (16%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LVTGA GF+G+++ AL +G V L + LL+ V V+EGD+
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRAL---------VRSGSDAVLLDGLPVEVVEGDLT 51
Query: 153 DAKLLAKLFDAVAFTH-VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
DA LA A+ V HLAA ++ +N+ G +L+A A +
Sbjct: 52 DAASLA---AAMKGCDRVFHLAAF--TSLWAKDRKELYRTNVEGTRNVLDAALEAGVR-R 105
Query: 212 IVWASSSSVYGLNENVPFSEAD--RTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
+V SS + G + E + Y +K E GL + +
Sbjct: 106 VVHTSSIAALGGPPDGRIDETTPWNERPFPNDYYRSKLLAELEVLEAAA-EGLDVVIVNP 164
Query: 270 FTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329
V+GP + + L GK G F + D+ +G + +++
Sbjct: 165 SAVFGPGDEGPTSTGLDVLDYLNGKLPAYPPG------GTSFVDVRDVAEGHIAAMEK-- 216
Query: 330 GPAPYR-IFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP---GNGDV-----PFTH- 379
G R I N S L L VK + I + T
Sbjct: 217 GRRGERYILGGENLSFKQ---LFETLAEITGVKPPRRTIPPWLLKAVAALSELKARLTGK 273
Query: 380 ---------------ANISS--AQKEFGYRPTTDLQTGLKKFVRWY 408
SS A++E GY P L+ L+ + W
Sbjct: 274 PPLLTPRTARVLRRNYLYSSDKARRELGYSPRP-LEEALRDTLAWL 318
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 4e-16
Identities = 79/296 (26%), Positives = 106/296 (35%), Gaps = 53/296 (17%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN-FNNYYDPSLK--------------KAR 135
M VL+ G G+ G +L L KRG V +DN D L +A
Sbjct: 1 MKVLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAW 60
Query: 136 KALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYV---HSN 192
K L F + GD D + LA+L + V+H A Q Y+M + H+N
Sbjct: 61 KELTGKTIEFYV-GDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHANYTQHNN 119
Query: 193 IAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEA-------DRTD------QPA 239
+ G + LL A K +P +V + YG N+ E R D Q
Sbjct: 120 VIGTLNLLFAIKEFDPDCHLVKLGTMGEYG-TPNIDIPEGYITIEHNGRRDTLPYPKQAG 178
Query: 240 SLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMA------------YFS-- 285
S Y +K +G+ IT L VYG A F
Sbjct: 179 SWYHLSKVHDSHNIMFACKAWGIRITDLNQGVVYGTKTEETEADERLINRFDYDGVFGTV 238
Query: 286 ---FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFN 338
F G P+TVY GK R F I D V+ +L+ A YR+FN
Sbjct: 239 LNRFCVQAAIGHPLTVY-GKG--GQTRGFISIRDTVQCLELALENPAKAGEYRVFN 291
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 7e-16
Identities = 70/275 (25%), Positives = 104/275 (37%), Gaps = 28/275 (10%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIE 148
M VL+TGA+GFVG ++ L + ++ +D + + + I
Sbjct: 1 MKVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPSGAPRVTQ----------IA 50
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
GD+ L+ L + V HLAA A + N+ G LLEA + P
Sbjct: 51 GDLAVPALIEALANGRPDV-VFHLAAIVS-GGAEADFDLGYRVNVDGTRNLLEALRKNGP 108
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE-IAHTYNHIYGLSITGL 267
+P V+ SS +VYGL P ++ D PAS Y A K E + + T L
Sbjct: 109 KPRFVFTSSLAVYGLPLPNPVTDHTALD-PASSYGAQKAMCELLLNDYSRRGFVDGRT-L 166
Query: 268 RFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL-ARDFTYIDDIVKGCLGSL- 325
R TV GRP+ A +F I++ G+ A Y V + +
Sbjct: 167 RLPTVCVRPGRPNKAASAFASTIIR----EPLVGEEAGLPVAEQLRYWLKSVATAVANFV 222
Query: 326 ----DTSAGPAPYRIFNLGNTSPVTVPKLVNILER 356
+ P R L S VTV + + L
Sbjct: 223 HAAELPAEKFGPRRDLTLPGLS-VTVGEELRALIP 256
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 4e-15
Identities = 77/336 (22%), Positives = 117/336 (34%), Gaps = 54/336 (16%)
Query: 93 VLVTGAAGFVGTHVSLALKK--RGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+LVTGAAG +G ++ L R GV GLD R+ + V + D
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGLD------------RRRPPGSPPKVEYVRLD 48
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I D A +F V+HLA H N+ G +L+AC +A P
Sbjct: 49 IRDPA-AADVFREREADAVVHLAFILDPPRDGAERHRI---NVDGTQNVLDACAAA-GVP 103
Query: 211 SIVWASSSSVYG--LNENVPFSEADRTD-QPASLYAATKKAGEEIAHTYNHIY-GLSITG 266
+V SS +VYG + P +E P Y+ K E++ + + L++T
Sbjct: 104 RVVVTSSVAVYGAHPDNPAPLTEDAPLRGSPEFAYSRDKAEVEQLLAEFRRRHPELNVTV 163
Query: 267 LRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326
LR T+ GP R F + L D F + DD+ +L
Sbjct: 164 LRPATILGPGTRNTTRDF-LSPRRL--------PVPGGFDPPFQFLHEDDVA----RALV 210
Query: 327 TSAGPAPYRIFNLGNTSPVT------------VPKLVNILERHLKVKAKKNVIEMPGNGD 374
+ IFN+ PV VP + + P
Sbjct: 211 LAVRAGATGIFNVAGDGPVPLSLVLALLGRRPVPLPSPLPAALAAARRLGLRPLPP--EQ 268
Query: 375 VPFTH----ANISSAQKEFGYRPTTDLQTGLKKFVR 406
+ F + + A+ E G++P L+ F R
Sbjct: 269 LDFLQYPPVMDTTRARVELGWQPKHTSAEVLRDFRR 304
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 9e-15
Identities = 76/339 (22%), Positives = 127/339 (37%), Gaps = 62/339 (18%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVI---EG 149
+LVTG G VG+ + L +RG V E
Sbjct: 2 ILVTGHRGLVGSAIVRVLARRGY--------------------------ENVVFRTSKEL 35
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYA-MQNPHSYVHSNIAGLVTLLEACKSANP 208
D+ D + + F+ +V+HLAA+ G A M P ++ N+ ++ A
Sbjct: 36 DLTDQEAVRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGV 95
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQP--ASL--YAATKKAGEEIAHTYNHIYGLSI 264
+ +V+ SS +Y P E+D P + YA K+AG ++ Y YG
Sbjct: 96 K-KLVFLGSSCIYPDLAPQPIDESDLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQYGCDY 154
Query: 265 TGLRFFTVYGPWGR---------PDM---AYFSFTRNILQGKPITVY-RGKNHVDLARDF 311
+ +YGP P + + + R GK +TV+ G R+F
Sbjct: 155 ISVMPTNLYGPHDNFDPENSHVIPALIRKFHEAKLRG---GKEVTVWGSGTP----RREF 207
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM-P 370
Y DD+ + + L+ P I N+G+ +++ +L + +V K I
Sbjct: 208 LYSDDLARAIVFLLENYDEPI---IVNVGSGVEISIRELAEAIA---EVVGFKGEIVFDT 261
Query: 371 GNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
D S + G+ P T L+ G+++ WYL
Sbjct: 262 SKPDGQPRKLLDVSKLRALGWFPFTPLEQGIRETYEWYL 300
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 4e-14
Identities = 84/337 (24%), Positives = 119/337 (35%), Gaps = 60/337 (17%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIE-GD 150
VLVTGA GF+G + L RG+ V R A V + E D
Sbjct: 1 KVLVTGANGFIGRALVDKLLSRGEEVRIA-------------VRNAENAEPSVVLAELPD 47
Query: 151 INDAKLLAKLFDAV----AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
I+ L DAV A HVM+ Q + Y N L A
Sbjct: 48 IDSFTDLFLGVDAVVHLAARVHVMN--DQGADPLSD-----YRKVNTELTRRLARAAARQ 100
Query: 207 NPQPSIVWASSSSVYG-LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSIT 265
+ V+ SS V G PF E D P Y +K E G+ +
Sbjct: 101 GVK-RFVFLSSVKVNGEGTVGAPFDETDPPA-PQDAYGRSKLEAERALLELGASDGMEVV 158
Query: 266 GLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325
LR VYGP R + A R I +G P+ KN R +D++V +
Sbjct: 159 ILRPPMVYGPGVRGNFA--RLMRLIDRGLPLPPGAVKNR----RSLVSLDNLVDAIYLCI 212
Query: 326 DTSAGPAPYRIFNLGNTSPVTVPKLVNILERHL------------------KVKAKKNVI 367
A F + + PV+ +LV+ + R L K+ K+ VI
Sbjct: 213 SLPK--AANGTFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAGLLRFAAKLLGKRAVI 270
Query: 368 E-MPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKK 403
+ + G+ + Q E G+RP L+ GL++
Sbjct: 271 QRLFGSLQY-----DPEKTQNELGWRPPISLEEGLQE 302
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 86/353 (24%), Positives = 134/353 (37%), Gaps = 56/353 (15%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVG--LDNFNNYYDPSLKKARKALLNNHGVFVI 147
G VLVTG GF G+ +SL L + G V G LD + P+L + F
Sbjct: 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTS---PNLFELLNLAKKIEDHF-- 58
Query: 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
GDI DA L K V HLAAQ VR + +P +N+ G V LLEA ++
Sbjct: 59 -GDIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIG 117
Query: 208 PQPSIVWASSSSVYGLNENV-PFSEADRTD--QPASLYAATKKAGEEIAHTY-------N 257
++V +S Y +E V + E D P Y+++K E + +Y
Sbjct: 118 SVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDP---YSSSKACAELVIASYRSSFFGVA 174
Query: 258 HIYGLSITGLRFFTVY--GPWGR----PDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311
+ +G+ I R V G W PD+ R K + + R + R +
Sbjct: 175 NFHGIKIASARAGNVIGGGDWAEDRLIPDV-----IRAFSSNKIVII-RNPDAT---RPW 225
Query: 312 TYIDDIVKGCL-------GSLDTSAGPAPYRIFNLG--NTSPVTVPKLVNILERHLKVKA 362
++ + + G L AG +N G + V +LV
Sbjct: 226 QHVLEPLSGYLLLAEKLFTGQAEFAGA-----WNFGPRASDNARVVELVVDALEFWWGDD 280
Query: 363 KKNVIEMPGNGDVP----FTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411
+ E + + P + S A+ G+ P L+ + + V WY ++
Sbjct: 281 AE--WEDDSDLNHPHEARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYKAW 331
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 91/377 (24%), Positives = 146/377 (38%), Gaps = 82/377 (21%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGD-GVVGLD-NFNNYYDPSLKKARKALLNNHGVFVIE 148
VL+ G GF+G H+S + + D V G+D + D L+N+ + E
Sbjct: 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD---------LVNHPRMHFFE 52
Query: 149 GDINDAK----LLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNI--------AGL 196
GDI K K D + + L A A P +YV + A L
Sbjct: 53 GDITINKEWIEYHVKKCDVI-----LPLVAIA-------TPATYVKQPLRVFELDFEANL 100
Query: 197 VTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRT------DQPASLYAATKKAGE 250
+ A K +V+ S+S VYG+ + F ++P +YA +K+ +
Sbjct: 101 PIVRSAVKYGK---HLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMD 157
Query: 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFS----------FTRNILQGKPITVYR 300
+ Y GL+ T R F GP D Y F +I++G+PI++
Sbjct: 158 RVIWAYGMEEGLNFTLFRPFNWIGP--GLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVD 215
Query: 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN-TSPVTVPKLVNIL----- 354
G + R FT IDD + + ++ G A +I+N+GN + +V +L N +
Sbjct: 216 GGSQ---KRAFTDIDDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAA 272
Query: 355 ------ERHLKVKAKKNVIEMP-----GNG--DVPFTHANISSAQKEFGYRPTTDLQTGL 401
E KVK ++E G G DV I + +E G+ P T + L
Sbjct: 273 EYPEYAESAKKVK----LVETTSGAYYGKGYQDVQNRVPKIDNTMQELGWAPKTTMDDAL 328
Query: 402 KKFVRWYLSYYGYNRGK 418
++ Y + R
Sbjct: 329 RRIFEAYRGHVAEARAL 345
|
Length = 347 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 76/361 (21%), Positives = 134/361 (37%), Gaps = 70/361 (19%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG-VFVIEGD 150
S LV G +GF+G H+ L +RG+ V + +D ++ + ++ G V GD
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTV------HVFD--IRPTFELDPSSSGRVQFHTGD 52
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D + L K F+ V H A+ N Y N+ G ++EAC+ +
Sbjct: 53 LTDPQDLEKAFNEKGPNVVFHTASPD----HGSNDDLYYKVNVQGTRNVIEACRKCGVK- 107
Query: 211 SIVWASSSSVYGLNENVPFSEADRT----DQPASLYAATKKAGEE-IAHTYNHIYGLSIT 265
+V+ SS+SV + D + D+ Y TK E+ + + GL
Sbjct: 108 KLVYTSSASV--VFNGQDIINGDESLPYPDKHQDAYNETKALAEKLVLKANDPESGLLTC 165
Query: 266 GLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR-GKNHVDLAR-----DFTYIDDIVK 319
LR ++GP G + + + GK + DFTY++++
Sbjct: 166 ALRPAGIFGP-GDRQLVPGL----------LKAAKNGKTKFQIGDGNNLFDFTYVENVAH 214
Query: 320 GCL---GSLDTSAGPAPY--RIFNLGNTSPVTVPKLVNILERHL------KVKAKKNV-- 366
+ +L +S+ F + N P+ + L +K + V
Sbjct: 215 AHILAADALLSSSHAETVAGEAFFITNDEPIYFWDFARAIWEGLGYERPPSIKLPRPVAL 274
Query: 367 -----------IEMPGNGDVPFTHA--------NISSAQKEFGYRPTTDLQTGLKKFVRW 407
+ PF A NI A+K GY P L+ G+++ ++W
Sbjct: 275 YLASLLEWTCKVLGKEPTFTPFRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGIERTLQW 334
Query: 408 Y 408
+
Sbjct: 335 F 335
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 5e-12
Identities = 67/291 (23%), Positives = 107/291 (36%), Gaps = 48/291 (16%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDG---VVGLDNFNNYYDPSLKKA-RKALLNNHGVF 145
G ++LVTG AG +G+ + + K G V D + L + R ++ F
Sbjct: 2 GKTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLH---ELVRELRSRFPHDKLRF 58
Query: 146 VIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKS 205
+I GD+ D + L + F V H AA V NP + +N+ G +++A
Sbjct: 59 II-GDVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIE 117
Query: 206 ANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEI---AHTYNHIYGL 262
+ + ++ +V P ++ ATK+ E++ + Y+
Sbjct: 118 NGVEKFVCISTDKAVN----------------PVNVMGATKRVAEKLLLAKNEYSSSTKF 161
Query: 263 SITGLRFFTVYGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYIDDIV 318
S RF V G G S F + I +G P+TV D+ R F I + V
Sbjct: 162 STV--RFGNVLGSRG-------SVLPLFKKQIKKGGPLTV----TDPDMTRFFMTIPEAV 208
Query: 319 KGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHL-KVKAKKNVIE 368
L + G IF L PV + L L L + I
Sbjct: 209 DLVLQACILGDGGG---IFLLDMGPPVKILDLAEALIELLGYEPYEDIPIF 256
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 66/274 (24%), Positives = 94/274 (34%), Gaps = 68/274 (24%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M +L+ G F+G + L G V FN R GV I GD
Sbjct: 1 MKILIIGGTRFIGKALVEELLAAGHDV---TVFNR--------GRTKPDLPEGVEHIVGD 49
Query: 151 INDAKLLAKL-----FDAV----AFT--HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTL 199
ND L +L FD V A+T V
Sbjct: 50 RNDRDALEELLGGEDFDVVVDTIAYTPRQVE---------------------------RA 82
Query: 200 LEACKSANPQPSIVWASSSSVYG-----LNENVPFSE--ADRTDQPASLYAATKKAGEEI 252
L+A K Q ++ SS+SVY + E+ P E A P Y K+A E++
Sbjct: 83 LDAFKGRVKQ--YIFISSASVYLKPGRVITESTPLREPDAVGLSDPWD-YGRGKRAAEDV 139
Query: 253 AHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312
T +R +YGP + F + +G+PI V G H + F
Sbjct: 140 LIEA---AAFPYTIVRPPYIYGPGDYTGRLAY-FFDRLARGRPILV-PGDGHSLVQ--FI 192
Query: 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346
++ D+ + LG+ A IFN+ VT
Sbjct: 193 HVKDLARALLGAAGNPK--AIGGIFNITGDEAVT 224
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-11
Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 24/165 (14%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+L+ GA GF+G ++ L ++G V L N + A V+EGD+
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVR-NTKRLSKEDQEPVA--------VVEGDLR 51
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D L+ V V+HLA A ++ + ++ G +LEA K
Sbjct: 52 DLDSLSDAVQGV--DVVIHLAG------APRDTRDFCEVDVEGTRNVLEAAK-EAGVKHF 102
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYN 257
++ SS YG E + P+S Y A K E + +
Sbjct: 103 IFISSLGAYG----DLHEETE--PSPSSPYLAVKAKTEAVLREAS 141
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-10
Identities = 86/358 (24%), Positives = 139/358 (38%), Gaps = 57/358 (15%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGL----DNFNN------YYDPSLKKARKALLNNHG 143
L+TG G G++++ L ++G V GL +FN Y DP KA + H
Sbjct: 4 LITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDP--HNVNKARMKLH- 60
Query: 144 VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
GD+ D+ L ++ D + T + +LAAQ+ V+ + + P + G + LLEA
Sbjct: 61 ----YGDLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAV 116
Query: 204 KSANPQPSIVW--ASSSSVYGL------NENVPFSEADRTDQPASLYAATKKAGEEIAHT 255
++ S+ + AS+S +YG NE PF P S YAA K I
Sbjct: 117 RTLGLIKSVKFYQASTSELYGKVQEIPQNETTPF-------YPRSPYAAAKLYAHWITVN 169
Query: 256 YNHIYGL-SITGLRFFTVYGPWGRPDMAYFSFTR---NILQGKPITVYRGKNHVDLARDF 311
Y YGL ++ G+ F P + TR I G +Y G ++D RD+
Sbjct: 170 YREAYGLFAVNGI-LFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLG--NLDAKRDW 226
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRI-------------FNLGNTSPVTVPKLVNILERHL 358
+ D V+ L P Y I + K I E
Sbjct: 227 GHAKDYVEAMWLMLQQDK-PDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGR 285
Query: 359 KVKAKKNVIEMPGN----GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
+ K +E+ +V + + A+++ G++P + +K+ V L
Sbjct: 286 CKETGKVHVEIDPRYFRPTEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLELA 343
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 37/255 (14%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+L+TGA G +G + LK+RG V+G + +F + D+
Sbjct: 2 ILITGATGMLGRALVRLLKERGYEVIGTGR-----------------SRASLFKL--DLT 42
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D + + +++ AA V +P N+ L A K + +
Sbjct: 43 DPDAVEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGAR--L 100
Query: 213 VWASSSSVY-GLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
+ S+ V+ G + P+ E D + P ++Y +K GE N Y LR
Sbjct: 101 IHISTDYVFDG--KKGPYKEEDAPN-PLNVYGKSKLLGEVAVLNANPRY----LILRTSW 153
Query: 272 VYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGP 331
+YG + R + K + V D TY D+ L+
Sbjct: 154 LYGELKNGENFVEWMLRLAAERKEVNVV-----HDQIGSPTYAADLADAI---LELIERN 205
Query: 332 APYRIFNLGNTSPVT 346
+ I++L N+ P++
Sbjct: 206 SLTGIYHLSNSGPIS 220
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 59/260 (22%), Positives = 92/260 (35%), Gaps = 48/260 (18%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M +L+TGA G +GT + AL + V+ D E D
Sbjct: 1 MKILITGANGQLGTELRRALPGEFE-VIATD------------------------RAELD 35
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I D + ++ V++ AA V A P N G L A +
Sbjct: 36 ITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGAR- 94
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE-IAHTYNHIYGLSITGLRF 269
+V S+ V+ + P+ E D + P ++Y +K AGEE + I LR
Sbjct: 95 -LVHISTDYVFDGEKGGPYKETDTPN-PLNVYGRSKLAGEEAVRAAGPRHL---I--LRT 147
Query: 270 FTVYGPWGRPDMAYFSFT--RNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327
VYG +G F T R +GK + V D TY +D+ L+
Sbjct: 148 SWVYGEYGNN----FVKTMLRLAKEGKELKVVD-----DQYGSPTYTEDLAD---AILEL 195
Query: 328 SAGPAPYRIFNLGNTSPVTV 347
+++L N+ +
Sbjct: 196 LEKEKEGGVYHLVNSGECSW 215
|
Length = 281 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 6e-10
Identities = 48/167 (28%), Positives = 68/167 (40%), Gaps = 11/167 (6%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
LVTG GF+G H+ L +R + + + + + P L + + V IEGDI
Sbjct: 1 VCLVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTDIEGDI 60
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
D L + V+ V+H AA V N N+ G +LEAC N
Sbjct: 61 KDLSFLFRACQGVSV--VIHTAAIVDVFG-PPNYEELEEVNVNGTQAVLEACVQNN-VKR 116
Query: 212 IVWASSSSVYGLN-ENVPFSEADRTDQP-----ASLYAATKKAGEEI 252
+V+ SS V G N + P D P YA++K E I
Sbjct: 117 LVYTSSIEVAGPNFKGRPIFNGV-EDTPYEDTSTPPYASSKLLAENI 162
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 6e-10
Identities = 65/258 (25%), Positives = 97/258 (37%), Gaps = 53/258 (20%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LVTGA G +G ++ L +RG VV LD R E D+
Sbjct: 1 ILVTGANGQLGRELTRLLAERGVEVVALD-------------RP-----------ELDLT 36
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D + +A L V++ AA V A P N G L EAC + +
Sbjct: 37 DPEAVAALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALGPGNLAEACAARG--APL 94
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYN--HIYGLSITGLRFF 270
+ S+ V+ + P+ E D T P ++Y TK AGE+ N H+ LR
Sbjct: 95 IHISTDYVFDGAKGGPYREDDPTG-PLNVYGRTKLAGEQAVLAANPRHLI------LRTA 147
Query: 271 TVYGPWGRPDMAYFSFTRNIL----QGKPITVYRGKNHVDLARDF-TYIDDIVKGCLGSL 325
VYG +G +F + +L + + V VD T D+ L +
Sbjct: 148 WVYGEYGN------NFVKTMLRLAAERDELRV------VDDQLGSPTSARDLADALLALI 195
Query: 326 D-TSAGPAPYRIFNLGNT 342
GPA ++L +
Sbjct: 196 RKRLRGPALAGTYHLAGS 213
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 9e-10
Identities = 66/249 (26%), Positives = 97/249 (38%), Gaps = 39/249 (15%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGL----DNFNN------YYDPSLKKARKALLNNHG 143
L+TG G G++++ L +G V G+ NFN Y DP KAR
Sbjct: 10 LITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKAR-------- 61
Query: 144 VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
+ + GD++DA L + D + V +LAAQ+ V + + P G + LLEA
Sbjct: 62 MKLHYGDLSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAV 121
Query: 204 KSANPQPSIV----WASSSSVYG-----LNENVPFSEADRTDQPASLYAATKKAGEEIAH 254
+ + A SS +YG +E PF P S YA K A
Sbjct: 122 RLHGQETGRQIKYYQAGSSEMYGSTPPPQSETTPF-------HPRSPYAVAKVAAHWYTV 174
Query: 255 TYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTR---NILQGKPITVYRGKNHVDLARDF 311
Y YGL F P + TR I G ++ G ++D +RD+
Sbjct: 175 NYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLG--NLDASRDW 232
Query: 312 TYIDDIVKG 320
+ D V+
Sbjct: 233 GFAGDYVEA 241
|
Length = 340 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 54/244 (22%), Positives = 84/244 (34%), Gaps = 48/244 (19%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDG---VVGLDNFNNYYDPSLKKARKALLNNHG--- 143
G +VLVTG G +G+ + + K + D + Y L
Sbjct: 250 GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLY------LIDMELREKFPELK 303
Query: 144 -VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEA 202
F I GD+ D + + + V H AA V NP + +N+ G + EA
Sbjct: 304 LRFYI-GDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEA 362
Query: 203 CKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGL 262
V + D+ P ++ ATK+ E++ N
Sbjct: 363 AIKNG-----V-----------KKFVLISTDKAVNPTNVMGATKRLAEKLFQAANRNVSG 406
Query: 263 SIT---GLRFFTVYGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYID 315
+ T +RF V G G S F + I +G P+TV D+ R F I
Sbjct: 407 TGTRFCVVRFGNVLGSRG-------SVIPLFKKQIAEGGPLTV----TDPDMTRFFMTIP 455
Query: 316 DIVK 319
+ V+
Sbjct: 456 EAVQ 459
|
Length = 588 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 30/186 (16%)
Query: 93 VLVTGAAGFVGTHVSLALKKR--GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+L+TG G +G+ ++ L+KR D V+ D RK H V +
Sbjct: 2 ILITGGLGQIGSELAKLLRKRYGKDNVIASD------------IRK--PPAHVVLSGPFE 47
Query: 151 INDAKLLAKLFDAVA---FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
D L + V T ++HLAA +NP N+ GL +LE + N
Sbjct: 48 YLDVLDFKSLEEIVVNHKITWIIHLAALLSAV-GEKNPPLAWDVNMNGLHNVLELAREHN 106
Query: 208 PQPSIVWASSSSVYGLN---ENVPFSEADRTDQ-PASLYAATKKAGEEIAHTYNHIYGLS 263
I S+ +G N P D T Q P ++Y +K A E + Y+H +G+
Sbjct: 107 L--RIFVPSTIGAFGPTTPRNNTP----DDTIQRPRTIYGVSKVAAELLGEYYHHKFGVD 160
Query: 264 ITGLRF 269
LR+
Sbjct: 161 FRSLRY 166
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-09
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 25/193 (12%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTGA GFVG+ V L ++G+ V L + + L V ++EGD
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVL---------VRPTSDRRNLEGLDVEIVEGD 51
Query: 151 INDAKLLAKLFDAVA-FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
+ D L K AVA + H+AA R +P +N+ G LL A A +
Sbjct: 52 LRDPASLRK---AVAGCRALFHVAAD--YRLWAPDPEEMYAANVEGTRNLLRAALEAGVE 106
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASL------YAATKKAGEEIAHTYNHIYGLS 263
+V+ SS + G+ + + AD T P+SL Y +K E+ A GL
Sbjct: 107 -RVVYTSSVATLGVRGDG--TPADET-TPSSLDDMIGHYKRSKFLAEQAALEMAAEKGLP 162
Query: 264 ITGLRFFTVYGPW 276
+ + T GP
Sbjct: 163 VVIVNPSTPIGPR 175
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 56/235 (23%), Positives = 89/235 (37%), Gaps = 23/235 (9%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND 153
LVTG GF+G H+ L + G+ + + F+ + P L + + IEGD+ D
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGE-LQEVRVFDLRFSPEL---LEDFSKLQVITYIEGDVTD 56
Query: 154 AKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIV 213
+ L + V+H AA V + + N+ G +L+AC A +V
Sbjct: 57 KQDLRRALQGSDV--VIHTAAIIDVF-GKAYRDTIMKVNVKGTQNVLDACVKAG-VRVLV 112
Query: 214 WASSSSVYGLNEN-VPFSEAD----RTDQPASLYAATKKAGEEIAHTYNHIY----GLSI 264
+ SS V G N P D Y +K E++ N G
Sbjct: 113 YTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPESKALAEKLVLKANGSTLKNGGRLY 172
Query: 265 T-GLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV 318
T LR ++G G P + F F +L+ G +V D Y+ ++
Sbjct: 173 TCALRPAGIFGE-GDPFL--FPFLVRLLKNGLAKFRTGDKNVLS--DRVYVGNVA 222
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 76/299 (25%), Positives = 110/299 (36%), Gaps = 53/299 (17%)
Query: 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF-NNYYDPSLK-------------- 132
S V+V G G+ G +L L KRG V +DN +D L
Sbjct: 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERV 104
Query: 133 KARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYV--- 189
+ K + + GDI D + L++ F + V+H Q Y+M + V
Sbjct: 105 RRWKEVSGKEIELYV-GDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQ 163
Query: 190 HSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEA-------DRTD------ 236
H+N+ G + +L A K P +V + YG N+ E RTD
Sbjct: 164 HNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYG-TPNIDIEEGYITITHNGRTDTLPYPK 222
Query: 237 QPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGP-----------WGRPDM-AYF 284
Q +S Y +K +G+ T L VYG R D F
Sbjct: 223 QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVF 282
Query: 285 --SFTRNILQ---GKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFN 338
+ R +Q G P+TVY GK R F I D V+ ++ A P +R+FN
Sbjct: 283 GTALNRFCVQAAVGHPLTVY-GKG--GQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFN 338
|
Length = 442 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 36/190 (18%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
VLVTGA+GFV +HV L +RG V DPS K LL+ ++
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRAT-----VRDPSKVKKVNHLLD------LDAKPG 49
Query: 153 DAKL-LAKLFDAVAF-------THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACK 204
+L +A L D +F V H+A V ++ ++P+ + I G + L+A
Sbjct: 50 RLELAVADLTDEQSFDEVIKGCAGVFHVATP--VSFSSKDPNEVIKPAIGGTLNALKAAA 107
Query: 205 SANPQPSIVWASSSSVYGLNE-----------NVPFSEADRTDQ-PASLYAATKKAGEEI 252
+A V SS+ + + + E D + A +YAA+K E+
Sbjct: 108 AAKSVKRFVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKA 167
Query: 253 AHTY---NHI 259
A + N+I
Sbjct: 168 AWKFADENNI 177
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 72/339 (21%), Positives = 118/339 (34%), Gaps = 58/339 (17%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND 153
V G G VG+ + L+ G F N +L H E D+
Sbjct: 1 FVAGHRGLVGSAIVRKLEALG--------FTNL-----------VLRTHK----ELDLTR 37
Query: 154 AKLLAKLFDAVAFTHVMHLAAQAGVRYA-MQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
+ F T+V+ AA+ G +A M P ++ N+ +++A + +
Sbjct: 38 QADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KL 96
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASL----YAATKKAGEEIAHTYNHIYGLSITGLR 268
++ SS +Y P E P YA K AG ++ Y YG
Sbjct: 97 LFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGM 156
Query: 269 FFTVYGPWG--RPDMAYF------SFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320
+YGP P+ ++ F G P V G R+F ++DD+
Sbjct: 157 PTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSP--LREFLHVDDLADA 214
Query: 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN-------G 373
+ + +G N+G+ VT+ +L + K V+ G
Sbjct: 215 VVFLMRRYSGAEH---VNVGSGDEVTIKEL---------AELVKEVVGFEGELVWDTSKP 262
Query: 374 DVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
D SS + G+ P L+ GL++ +WYL Y
Sbjct: 263 DGTPRKLMDSSKLRSLGWDPKFSLKDGLQETYKWYLENY 301
|
Length = 306 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 25/177 (14%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVG----LDNFNNYYDPSLKKARKALLNNHGV-FVI 147
VLVTGA GF+ +H+ L K G V G L LK KA N + FVI
Sbjct: 2 VLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAK-----LKALLKAAGYNDRLEFVI 56
Query: 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNP-HSYVHSNIAGLVTLLEACKSA 206
D+ + V +V+H+A+ + + + + G + +LEA K+A
Sbjct: 57 VDDLTAPNAWDEALKGV--DYVIHVASP--FPFTGPDAEDDVIDPAVEGTLNVLEAAKAA 112
Query: 207 NPQPSIVWASS-SSVYGLN---ENVPFSEADRTD------QPASLYAATKKAGEEIA 253
+V SS ++V F+E D D Y A+K E+ A
Sbjct: 113 GSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAA 169
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 64/243 (26%), Positives = 85/243 (34%), Gaps = 57/243 (23%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARK----ALLNNHGVFV 146
M V VTGA GF+G+ V L G VVGL AR A L G V
Sbjct: 1 MKVFVTGATGFIGSAVVRELVAAGHEVVGL-------------ARSDAGAAKLEAAGAQV 47
Query: 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLV------TLL 200
GD+ D +L K A V+HLA H + + A V L
Sbjct: 48 HRGDLEDLDILRK--AAAEADAVIHLAFT----------HDFDNFAQACEVDRRAIEALG 95
Query: 201 EACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY 260
EA + +P I +S ++ L E + AA + E A
Sbjct: 96 EALRGTG-KPLIY---TSGIWLLGPTGGQEEDEEAPDDPPTPAA-RAVSEAAA------L 144
Query: 261 GLSITGLRFFTVYGP---WGRPDMAYFSFTRNILQGKPITVYRG--KNH------VDLAR 309
L+ G+R V P GR D + I + K ++ Y G KN D AR
Sbjct: 145 ELAERGVRASVVRLPPVVHGRGDHGFVPMLIAIAREKGVSAYVGDGKNRWPAVHRDDAAR 204
Query: 310 DFT 312
+
Sbjct: 205 LYR 207
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 49/219 (22%), Positives = 81/219 (36%), Gaps = 42/219 (19%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDG---VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
VLVTG G +G+ + + K + D F Y +++ + N+ + G
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLY---EIRQELRQEYNDPKLRFFIG 57
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
D+ D + L + + V H AA V NP + +N+ G + EA +
Sbjct: 58 DVRDRERLERAMEQHGVDTVFHAAALKHVPLVEYNPMEAIKTNVLGTENVAEAAIENGVE 117
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQ---PASLYAATKKAGEEI---AHTYNHIYGLS 263
V S TD+ P ++ ATK+ E++ A+ +
Sbjct: 118 -KFVLIS------------------TDKAVNPTNVMGATKRLAEKLFQAANRESGSGKTR 158
Query: 264 ITGLRFFTVYGPWGRPDMAYFS----FTRNILQGKPITV 298
+ +RF V G G S F + I G P+TV
Sbjct: 159 FSVVRFGNVLGSRG-------SVIPLFKKQIANGGPVTV 190
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 62/307 (20%), Positives = 107/307 (34%), Gaps = 48/307 (15%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVF-----VI 147
V VTG GF+G H+ L + G V+ L SL +A + + G+ V+
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVR-----SESLGEAHE-RIEEAGLEADRVRVL 54
Query: 148 EGDIN--DAKLLAKLFDAVA--FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
EGD+ + L A +A HV+H AA + N ++ NI G +LE
Sbjct: 55 EGDLTQPNLGLSAAASRELAGKVDHVIHCAAS--YDFQAPNEDAWRT-NIDGTEHVLELA 111
Query: 204 KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQP-ASLYAATKKAGEEIAHTY------ 256
+ Q S++ V G E Q + Y +K E++
Sbjct: 112 ARLDIQRFHY-VSTAYVAGNREGNIRETELNPGQNFKNPYEQSKAEAEQLVRAAATQIPL 170
Query: 257 -----NHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQG--KPITVYRGKNHVDLAR 309
+ + G S TG R + G Y G P+ G
Sbjct: 171 TVYRPSIVVGDSKTG-RIEKIDGL-------YELLNLLAKLGRWLPMP---GNKGA--RL 217
Query: 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM 369
+ +D + + A +IF+L + +P T+ ++ ++ + ++
Sbjct: 218 NLVPVDYVADAIVYLSKKPE--ANGQIFHLTDPTPQTLREIADLFKSAFLSPGLLVLLMN 275
Query: 370 PGNGDVP 376
N +P
Sbjct: 276 EPNASLP 282
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 54/266 (20%), Positives = 93/266 (34%), Gaps = 43/266 (16%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
VL+ G G++G ++ L +G V G + + A GV + D+
Sbjct: 1 VLILGC-GYLGQRLARQLLAQGWQVTGT---------TRSPEKLAADRPAGVTPLAADL- 49
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
L D + V+ L AG +P L LL+A +
Sbjct: 50 TQPGLLADVDHL----VISLPPPAGSYRGGYDPG---------LRALLDALAQLPAVQRV 96
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272
++ SS+ VYG ++ + + P++ E+ T LR +
Sbjct: 97 IYLSSTGVYG-DQQGEWVDETSPPNPSTESGRALLEAEQALLALGS---KPTTILRLAGI 152
Query: 273 YGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPA 332
YGP GR + + G+P N + ++DD+V +L PA
Sbjct: 153 YGP-GRHPLRRLA----QGTGRPPAGNAPTNRI-------HVDDLVGALAFALQ---RPA 197
Query: 333 PYRIFNLGNTSPVTVPKLVNILERHL 358
P ++N+ + PVT + L
Sbjct: 198 PGPVYNVVDDLPVTRGEFYQAAAELL 223
|
Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251 |
| >gnl|CDD|224015 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 24/149 (16%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH-GVFVIEGDI 151
+L+TG G +G ++ L+K G V L ++ KA N H V + EG
Sbjct: 1 ILITGGTGLIGRALTARLRKGGHQVTIL----------TRRPPKASQNLHPNVTLWEG-- 48
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQ--AGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
A L DA V++LA + A R+ + S I L+E ++ +
Sbjct: 49 -LADALTLGIDA-----VINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETK 102
Query: 210 PSIVWASSSSV--YGLNENVPFSEADRTD 236
P V S+S+V YG + + +E
Sbjct: 103 PK-VLISASAVGYYGHSGDRVVTEESPPG 130
|
Length = 297 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 40/162 (24%), Positives = 58/162 (35%), Gaps = 28/162 (17%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M V V GA GF+G +V L KRG V+ Y + + + + V +E D
Sbjct: 1 MVVTVFGATGFIGRYVVNRLAKRGSQVIVP-----YRCEAYARRLLVMGDLGQVLFVEFD 55
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQN-PHSYVHSNIAGLVTLLEACKSANPQ 209
+ D + + K + V++L G Y +N VH L +A K A
Sbjct: 56 LRDDESIRKALEGS--DVVINL---VGRLYETKNFSFEDVHVEGPE--RLAKAAKEAG-- 106
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE 251
V L + S S Y +K GEE
Sbjct: 107 ----------VERL---IHISALGADANSPSKYLRSKAEGEE 135
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 26/190 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+L+TG GF+G ++ L KRG V L R + EG
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTIL-------------TRSPPPGAN--TKWEGYKP 45
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQ--AGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
A A + V++LA + A R+ + S I L+EA +A Q
Sbjct: 46 WAGEDADSLE--GADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRLLVEAIAAA-EQK 102
Query: 211 SIVWASSSSV--YGLNENVPFSEADRTDQPASLYAA-TKKAGEEIAHTYNHIYGLSITGL 267
V+ S+S+V YG +E+ ++E D + A + EE A + G + L
Sbjct: 103 PKVFISASAVGYYGPSEDREYTEEDSP--AGDDFLAELCRDWEEAAQAAEDL-GTRVVLL 159
Query: 268 RFFTVYGPWG 277
R V GP G
Sbjct: 160 RTGIVLGPKG 169
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 68/266 (25%), Positives = 108/266 (40%), Gaps = 49/266 (18%)
Query: 93 VLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
++VTG AGF+G+++ AL +G D +V +DN LK K V +++ D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILV-VDN--------LKDGTKF------VNLVDLD 46
Query: 151 IND----AKLLAKLFDAVAFTH---VMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVT 198
I D LA++ F + H A + +Y M N + Y
Sbjct: 47 IADYMDKEDFLAQIMAGDDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKE------- 99
Query: 199 LLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNH 258
LL C + ++ASS++ YG F E ++P ++Y +K +E
Sbjct: 100 LLHYC--LEREIPFLYASSAATYG-GRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQILP 156
Query: 259 IYGLSITGLRFFTVYGP--WGRPDMAYFSFTRN--ILQGKPITVYRGKNHVDLARDFTYI 314
I G R+F VYGP + MA +F N + G+ ++ G + RDF Y+
Sbjct: 157 EANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSEN--FKRDFVYV 214
Query: 315 DDIVKGCLGSLDTSAGPAPYRIFNLG 340
D+ L + IFN G
Sbjct: 215 GDVAAVNLWFWENGVSG----IFNCG 236
|
Length = 308 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 22/145 (15%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+++TG GF+G ++ L G VV L +R+ VI D
Sbjct: 2 IVITGGTGFIGRALTRRLTAAGHEVVVL-------------SRRPGKAEGLAEVITWD-- 46
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQ--AGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
L V++LA + A R+ N + S I L+EA +A P
Sbjct: 47 GLSLGPWELPGA--DAVINLAGEPIACRRWTEANKKEILSSRIESTRVLVEAIANAPAPP 104
Query: 211 SIVWASSSSV--YGLNENVPFSEAD 233
V S+S+V YG + + +E
Sbjct: 105 K-VLISASAVGYYGHSGDEVLTENS 128
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 8e-05
Identities = 38/162 (23%), Positives = 51/162 (31%), Gaps = 34/162 (20%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M +LVTGA GFVG V L RG V ++ A GV V+ GD
Sbjct: 1 MKILVTGATGFVGGAVVRELLARGHEVRAA----------VRNPEAAAALAGGVEVVLGD 50
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D K L V ++ G + V + A ++A
Sbjct: 51 LRDPKSLVAGAKGVDGVLLIS-GLLDGSDAFRAVQVTAV----------VRAAEAAGAGV 99
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEI 252
S SV G + P + A K A E
Sbjct: 100 KHG--VSLSVLGADAASPSA-----------LARAKAAVEAA 128
|
Length = 275 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 40/158 (25%), Positives = 59/158 (37%), Gaps = 27/158 (17%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+L+TGA G +G + L G VV L R L D+
Sbjct: 2 ILITGANGQLGRELVQQLSPEGRVVVALT-------------RSQL-----------DLT 37
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D + L +L A+ V++ AA V A +P N L A +
Sbjct: 38 DPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHG--ARL 95
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250
V S+ V+ P+ E D T+ P ++Y +K AGE
Sbjct: 96 VHISTDYVFDGEGKRPYREDDATN-PLNVYGQSKLAGE 132
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
GD+ D + L + V + V+H AA V A NP + +NI G +++A
Sbjct: 60 GDVRDKERLTRALRGVDY--VVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGV 117
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
+ + A S+ D+ P +LY ATK A +++ N+I G G R
Sbjct: 118 KRVV--ALST--------------DKAANPINLYGATKLASDKLFVAANNISGSK--GTR 159
Query: 269 FFTV-YG 274
F V YG
Sbjct: 160 FSVVRYG 166
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 38/164 (23%), Positives = 53/164 (32%), Gaps = 39/164 (23%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDI 151
+ V GA G G + L RG V L +R GV ++ D+
Sbjct: 1 IAVIGATGKTGRRLVKELLARGHQVTAL-------------SRNPSKAPAPGVTPVQKDL 47
Query: 152 NDAKLLAKL---FDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
D LA+ DAV + G+ LL+A A
Sbjct: 48 FDLADLAEALAGVDAVVDAF---------------GARP---DDSDGVKHLLDAAARAGV 89
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEI 252
+ IV S++ +Y F D P YA K A EE+
Sbjct: 90 RR-IVVVSAAGLYRDEPG-TFRLDDAPLFP--PYARAKAAAEEL 129
|
Length = 182 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 36/141 (25%), Positives = 48/141 (34%), Gaps = 43/141 (30%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
VLV GA G VG HV L RG V L ++ L G V+ GD+
Sbjct: 1 KVLVVGATGKVGRHVVRELLDRGYQVRAL---------VRDPSQAEKLEAAGAEVVVGDL 51
Query: 152 NDAKLLAKLF---DAVAFTH--------------------VMHLAAQAGV-RYAM----- 182
DA+ LA DAV ++ A +AGV R+ +
Sbjct: 52 TDAESLAAALEGIDAVISAAGSGGKGGPRTEAVDYDGNINLIDAAKKAGVKRFVLVSSIG 111
Query: 183 -QNPHSYVHSNIAGLVTLLEA 202
P + L L+A
Sbjct: 112 ADKPSHP----LEALGPYLDA 128
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 56/274 (20%), Positives = 97/274 (35%), Gaps = 48/274 (17%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
+ V GA+G +G V+ L++RG V + ++ L GV ++ D
Sbjct: 1 TAHVLGASGPIGREVARELRRRGWDVRLVS-----------RSGSKLAWLPGVEIVAADA 49
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNP--HSYVHSNIAGLVTLLEACKSANPQ 209
DA +A A A V Y NP + + ++ A ++ +
Sbjct: 50 MDAS------SVIA------AARGADVIYHCANPAYTRWEELFPPLMENVVAAAEANGAK 97
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEI---AHTYNHIYGLSITG 266
+V + +YG P +E D QP + + EE AH I L +
Sbjct: 98 --LVLPGNVYMYGPQAGSPITE-DTPFQPTTRKGRIRAEMEERLLAAHAKGDIRALIVRA 154
Query: 267 LRFF--TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC--L 322
F+ W + ILQGK ++D ++TY+ D+ + L
Sbjct: 155 PDFYGPGAINSWLGAALF------AILQGKTAVFPG---NLDTPHEWTYLPDVARALVTL 205
Query: 323 GSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILER 356
+ G ++L +T +L+ I R
Sbjct: 206 AEEPDAFG----EAWHLPGAGAITTRELIAIAAR 235
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 18/92 (19%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVV---------------GLDNFNNYYDPSLKKA 134
G +VLV GAAG VG+ K G VV G D+ NY + +
Sbjct: 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQ 202
Query: 135 RKALLNNHGV-FVIEGDINDAKLLAKLFDAVA 165
+ L GV V+ D A A+A
Sbjct: 203 VRELTGGKGVDVVL--DTVGGDTFAASLAALA 232
|
Length = 326 |
| >gnl|CDD|191263 pfam05368, NmrA, NmrA-like family | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LV GA G+ G V A K G V L DP + A+ L GV ++EGD++
Sbjct: 1 ILVFGATGYQGGSVVRASLKAGHPVRALVR-----DPKSELAKS--LKAAGVELVEGDLD 53
Query: 153 DAKLLAKLFDAV 164
D + L + V
Sbjct: 54 DHESLVEALKGV 65
|
NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 32/191 (16%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
++TG A +G + L K+G V LD N P +A+ ++ D+
Sbjct: 3 AIITGGASGIGLATAKLLLKKGAKVAILDRNEN---PGAAAELQAINPKVKATFVQCDVT 59
Query: 153 DAKLLAKLFDAV--AFTHVMHLAAQAGV-------RYAMQNPHSY--VHSNIAGLV--TL 199
+ LA F F V L AG+ P + N+ G++ T
Sbjct: 60 SWEQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLPPPWEKTIDVNLTGVINTTY 119
Query: 200 L--EACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA----GEEIA 253
L V + SV GL P +Y+A+K +A
Sbjct: 120 LALHYMDKNKGGKGGVIVNIGSVAGLYP-APQ---------FPVYSASKHGVVGFTRSLA 169
Query: 254 HTYNHIYGLSI 264
+ G+ +
Sbjct: 170 DLLEYKTGVRV 180
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 39/192 (20%), Positives = 69/192 (35%), Gaps = 45/192 (23%)
Query: 92 SVLVTGAAGFVGTHV--SLALKKRGDGVVGL--------------DNFNNYYDPSLKKAR 135
+VL+TGA GF+G ++ L +K + L DN Y
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWD--- 57
Query: 136 KALLNNHGVFVIEGDINDAKL---------LAKLFDAVAFTHVMHLAAQAGVRYAMQNPH 186
L + V+ GD++ L LA+ D ++H A V + +
Sbjct: 58 --ELELSRIKVVVGDLSKPNLGLSDDDYQELAEEVDV-----IIHNGAN--VNW-VYPYE 107
Query: 187 SYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASL----- 241
+N+ G LL+ + +P + + S+ SV+ E + + D S
Sbjct: 108 ELKPANVLGTKELLKLAATGKLKP-LHFVSTLSVFSAEEYNALDDEESDDMLESQNGLPN 166
Query: 242 -YAATKKAGEEI 252
Y +K E++
Sbjct: 167 GYIQSKWVAEKL 178
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M +++ GA G VG V+ L + G VV +D D + + L + V+ GD
Sbjct: 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDR-----DEE--RVEEFLADELDTHVVIGD 52
Query: 151 INDAKLLAKL----FDAVA 165
D +L + DAV
Sbjct: 53 ATDEDVLEEAGIDDADAVV 71
|
Length = 225 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 421 | |||
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.97 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.97 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.96 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.96 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.95 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.94 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.94 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.94 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.94 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.94 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.94 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.93 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.93 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.93 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.93 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.93 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.93 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.93 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.93 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.92 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.92 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.92 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.92 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.92 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.92 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.92 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.92 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.92 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.92 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.92 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.92 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.92 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.92 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.92 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.92 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.91 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.91 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.91 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.91 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.91 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.91 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.91 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.91 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.91 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.91 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.91 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.91 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.91 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.91 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.91 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.9 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.9 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.9 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.9 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.9 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.9 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.9 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.9 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.9 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.9 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.9 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.9 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.9 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.9 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.9 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.9 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.9 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.9 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.9 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.89 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.89 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.89 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.89 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.89 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.89 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.89 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.89 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.89 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.89 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.89 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.88 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.88 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.88 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.88 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.88 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.88 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.88 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.88 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.88 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.88 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.88 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.88 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.88 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.87 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.87 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.87 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.87 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.87 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.87 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.87 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.87 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.87 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.87 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.87 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.87 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.87 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.87 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.86 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.86 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.86 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.86 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.86 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.85 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.85 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.85 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.84 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.83 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.83 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.83 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.83 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.83 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.83 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.82 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.82 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.82 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.79 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.79 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.79 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.78 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.78 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.78 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.77 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.77 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.76 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.76 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.76 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.75 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.73 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.72 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.68 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.67 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.67 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.61 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.6 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.58 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.54 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.45 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.42 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.35 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.35 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.34 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.21 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.18 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.17 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.05 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.88 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.83 | |
| PLN00106 | 323 | malate dehydrogenase | 98.77 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.75 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.73 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.59 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.55 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.53 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.48 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.36 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.34 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.34 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.32 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.3 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.22 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.2 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.17 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.05 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.05 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.95 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.88 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.8 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.79 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.78 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.78 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.71 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.7 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.63 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 97.61 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.61 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.56 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.54 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.48 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.46 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.46 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.42 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.41 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.35 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.32 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.31 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.28 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.28 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.27 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.26 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.26 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 97.25 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.23 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.22 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.21 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.21 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.2 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.2 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 97.18 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.18 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.16 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.16 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 97.15 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.14 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.13 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.11 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.11 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.11 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.11 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.07 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 97.04 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.98 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.98 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.98 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.97 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.96 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.96 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.95 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.94 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.91 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.88 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.86 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.82 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.81 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.81 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.79 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.76 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.76 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.72 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.7 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.69 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 96.68 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.67 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.61 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.6 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.59 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.58 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.58 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.58 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 96.56 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.54 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.53 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.53 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.53 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.47 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.46 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 96.44 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.44 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.41 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.39 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.37 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.36 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 96.33 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.32 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.31 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 96.3 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.29 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.27 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.26 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.25 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.25 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 96.21 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.2 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.19 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.17 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 96.14 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.13 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 96.12 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 96.12 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.1 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.07 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 96.07 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.05 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.05 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 95.96 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.94 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.88 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.86 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 95.84 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.84 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 95.83 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.75 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.74 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.72 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.72 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.72 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.71 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 95.71 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.7 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.69 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.68 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.68 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 95.62 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.62 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.61 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.61 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 95.55 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 95.54 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.53 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.53 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 95.51 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.5 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 95.47 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.47 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 95.47 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.46 | |
| PLN02928 | 347 | oxidoreductase family protein | 95.45 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.42 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.41 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.36 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 95.36 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 95.35 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 95.33 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.32 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 95.31 | |
| PLN02494 | 477 | adenosylhomocysteinase | 95.27 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 95.26 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.26 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 95.25 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.24 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 95.21 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 95.17 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 95.14 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.13 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.12 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 95.12 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.06 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 95.05 | |
| KOG2013 | 603 | consensus SMT3/SUMO-activating complex, catalytic | 95.05 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.04 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 95.04 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.02 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.0 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.99 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 94.96 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.96 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 94.95 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 94.93 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 94.83 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 94.81 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.79 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 94.79 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.78 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 94.78 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 94.73 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.69 |
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-51 Score=360.81 Aligned_cols=311 Identities=28% Similarity=0.429 Sum_probs=275.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|++|||||.||||+.+++++.++.. +|+.++...-. ..... .......+++.|+++|+.|.+.+.+++++.++|+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYA--gn~~~-l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~ 77 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYA--GNLEN-LADVEDSPRYRFVQGDICDRELVDRLFKEYQPDA 77 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEeccccc--CCHHH-HHhhhcCCCceEEeccccCHHHHHHHHHhcCCCe
Confidence 5799999999999999999999864 46777654321 11111 2233455799999999999999999999989999
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCC--CCCCCCCCCCCCChHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENV--PFSEADRTDQPASLYAATK 246 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~--~~~e~~~~~~~~~~Y~~sK 246 (421)
|+|.|+-.+++.+..+|...+++|+.||.+|++++++....-||+++|+..|||.-... .++|.++. .|.++|++||
T Consensus 78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~-~PsSPYSASK 156 (340)
T COG1088 78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPY-NPSSPYSASK 156 (340)
T ss_pred EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCC-CCCCCcchhh
Confidence 99999999999999999999999999999999999998864599999999999976543 57777765 8999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
+++..+++.+.+.+|+++++.|+++-|||++.+..+++.++.+++.|++++++ |+|.+.|||+||+|-|+|+..++.
T Consensus 157 AasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvY---GdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 157 AASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVY---GDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCcee---cCCcceeeeEEeHhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 799999999999999999999999
Q ss_pred cCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccc-----cceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHH
Q 043169 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK-----KNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGL 401 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-----~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l 401 (421)
.+ ..|++|||+++...+--|+++.|.+.+++..+ +.++. .+++......+|.+|++++|||.|++++|+||
T Consensus 234 kg---~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~-DRpGHD~RYaid~~Ki~~eLgW~P~~~fe~Gl 309 (340)
T COG1088 234 KG---KIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVE-DRPGHDRRYAIDASKIKRELGWRPQETFETGL 309 (340)
T ss_pred cC---cCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEecc-CCCCCccceeechHHHhhhcCCCcCCCHHHHH
Confidence 87 34999999999999999999999999998776 44443 56777777889999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 043169 402 KKFVRWYLSYY 412 (421)
Q Consensus 402 ~~~~~~~~~~~ 412 (421)
+++++||.++.
T Consensus 310 rkTv~WY~~N~ 320 (340)
T COG1088 310 RKTVDWYLDNE 320 (340)
T ss_pred HHHHHHHHhch
Confidence 99999999865
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=355.23 Aligned_cols=309 Identities=27% Similarity=0.406 Sum_probs=271.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||.|+||+|.+.+|++.|++|+++|+..+....++.. ..+.++++|+.|.+.+.++|++.+||.||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~--------~~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLK--------LQFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhh--------ccCceEEeccccHHHHHHHHHhcCCCEEE
Confidence 6899999999999999999999999999999977655443322 11789999999999999999999999999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+||...+..+..+|..+++.|+.||.+|++++++.+++ +|||.||+++||.....|+.|+.+. .|.++||.||++.|
T Consensus 73 HFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~-~~vFSStAavYG~p~~~PI~E~~~~-~p~NPYG~sKlm~E 150 (329)
T COG1087 73 HFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK-KFIFSSTAAVYGEPTTSPISETSPL-APINPYGRSKLMSE 150 (329)
T ss_pred ECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCC-EEEEecchhhcCCCCCcccCCCCCC-CCCCcchhHHHHHH
Confidence 999999888999999999999999999999999999976 9999999999999999999999887 58999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCC---------CCChHHHHHHHHHcCCC-eEEEec---CCCCcceeecccHHHH
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGR---------PDMAYFSFTRNILQGKP-ITVYRG---KNHVDLARDFTYIDDI 317 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~i~v~Dv 317 (421)
.+++.+...++++++++|-+|+.|.... .+.+++.++..++...+ +.+|.. ..||.-.||||||.|+
T Consensus 151 ~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DL 230 (329)
T COG1087 151 EILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDL 230 (329)
T ss_pred HHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHH
Confidence 9999999999999999999999985321 24566777776666555 666652 2368899999999999
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCC-C
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT-D 396 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~-~ 396 (421)
|.|++.+++.-.......+||+++|...|+.|+.+.+++.+|.+.+.++.+ .++++....+.|++||++.|||+|++ +
T Consensus 231 A~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~-RR~GDpa~l~Ad~~kA~~~Lgw~p~~~~ 309 (329)
T COG1087 231 ADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAP-RRAGDPAILVADSSKARQILGWQPTYDD 309 (329)
T ss_pred HHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCC-CCCCCCceeEeCHHHHHHHhCCCcccCC
Confidence 999999988653222236999999999999999999999999988776666 67899999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHH
Q 043169 397 LQTGLKKFVRWYLS 410 (421)
Q Consensus 397 l~e~l~~~~~~~~~ 410 (421)
|++.+++.++|+.+
T Consensus 310 L~~ii~~aw~W~~~ 323 (329)
T COG1087 310 LEDIIKDAWDWHQQ 323 (329)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999995
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=371.09 Aligned_cols=317 Identities=27% Similarity=0.447 Sum_probs=257.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH--hhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA--LLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
+++|+||||||+||||++|+++|+++|++|++++|............... .....++.++.+|+.|.+.+.++++++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~- 91 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV- 91 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC-
Confidence 46789999999999999999999999999999998654332222111111 011246889999999999999999865
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
|+|||+|+.........++...+++|+.|+.+++++|++.+++ +||++||+++||.....+..|+... .|.++|+.|
T Consensus 92 -d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~e~~~~-~p~~~Y~~s 168 (348)
T PRK15181 92 -DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLPKIEERIG-RPLSPYAVT 168 (348)
T ss_pred -CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCCCCCCCCC-CCCChhhHH
Confidence 9999999987665566778889999999999999999999875 9999999999997666666776544 677899999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
|.++|.+++.+.+.+|++++++||++||||+..+. ..++.++..+..++++.++ +++++.++|+|++|+|+++
T Consensus 169 K~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~---g~g~~~rd~i~v~D~a~a~ 245 (348)
T PRK15181 169 KYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYIN---GDGSTSRDFCYIENVIQAN 245 (348)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEe---CCCCceEeeEEHHHHHHHH
Confidence 99999999999888899999999999999976543 4577888888888888776 6789999999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCcc------ccceecCCCCCCCCcccCChHHHHHHcCCCcCC
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKA------KKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT 395 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~------~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~ 395 (421)
+.++........+++|||++++++|++|+++.+.+.++... .+.. ...+..+.....+|++|+++.|||.|++
T Consensus 246 ~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~k~~~~lGw~P~~ 324 (348)
T PRK15181 246 LLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIY-KDFRDGDVKHSQADITKIKTFLSYEPEF 324 (348)
T ss_pred HHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCccc-CCCCCCcccccccCHHHHHHHhCCCCCC
Confidence 98776431123578999999999999999999999987421 1111 1123445556789999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 043169 396 DLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 396 ~l~e~l~~~~~~~~~~~ 412 (421)
+++|+|+++++||+.+.
T Consensus 325 sl~egl~~~~~w~~~~~ 341 (348)
T PRK15181 325 DIKEGLKQTLKWYIDKH 341 (348)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999998763
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=336.86 Aligned_cols=319 Identities=45% Similarity=0.670 Sum_probs=283.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+++||||||.||||+|.+.+|+++|++|+++|...+...++.++..+.......+.++++|+.|.+.++++|+...+|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 57899999999999999999999999999999999999888888777776678999999999999999999999999999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
+|.|+.....+++.+|..+..+|+.|+.+|++.+++++. +.+|+.||+.+||.....|++|+.+...|.++|+.+|.+.
T Consensus 82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~-~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~i 160 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNV-KALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAI 160 (343)
T ss_pred EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCC-ceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHHH
Confidence 999999999999999999999999999999999999994 5999999999999999999999999866999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccC--CCCCCC--------ChHHHHHHHHH--------cCCCeEEEecCCCCcceeec
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYG--PWGRPD--------MAYFSFTRNIL--------QGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G--~~~~~~--------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 311 (421)
|++++.+++.++..++.+|.++++| |+.+.. ...+......+ .|.+... -+++..+++
T Consensus 161 E~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t----~dgt~vrdy 236 (343)
T KOG1371|consen 161 EEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTT----IDGTIVRDY 236 (343)
T ss_pred HHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccc----cCCCeeecc
Confidence 9999999999899999999999999 654322 22221111111 1333333 256899999
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGY 391 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~ 391 (421)
+|+-|.|+.++.+++.......-++||++.+...++.+|.+.+++.+|.+.+....+. +.++....+.+.+++.++|||
T Consensus 237 i~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~-R~gdv~~~ya~~~~a~~elgw 315 (343)
T KOG1371|consen 237 IHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPR-RNGDVAFVYANPSKAQRELGW 315 (343)
T ss_pred eeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCC-CCCCceeeeeChHHHHHHhCC
Confidence 9999999999999998755445569999999999999999999999999999998887 899999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHHHhCC
Q 043169 392 RPTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 392 ~p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
+|.++++|+++++++|+.++...
T Consensus 316 k~~~~iee~c~dlw~W~~~np~g 338 (343)
T KOG1371|consen 316 KAKYGLQEMLKDLWRWQKQNPSG 338 (343)
T ss_pred ccccCHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999988764
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=356.28 Aligned_cols=306 Identities=26% Similarity=0.381 Sum_probs=249.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.+.|+||||||+||||++|+++|+++|++|++++|......... .......+++++.+|+.+.. +. ++|
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~----~~~~~~~~~~~~~~Di~~~~-----~~--~~D 186 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENL----VHLFGNPRFELIRHDVVEPI-----LL--EVD 186 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHh----hhhccCCceEEEECcccccc-----cc--CCC
Confidence 35689999999999999999999999999999998543211111 11112346888999997643 33 459
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCC----CCCCCCChHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEAD----RTDQPASLYA 243 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~----~~~~~~~~Y~ 243 (421)
+|||+|+...+.....++...+++|+.|+.+|+++|++.+. ++|++||.++||.....+++|+. .+..+.+.|+
T Consensus 187 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg 264 (436)
T PLN02166 187 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYD 264 (436)
T ss_pred EEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchH
Confidence 99999998665444457788999999999999999999874 89999999999976666777763 2334668899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--CChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 244 ATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP--DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
.+|.++|.+++.+.+.++++++++||++||||+... ...+..++..+..++++.++ +++++.++|+|++|+|+++
T Consensus 265 ~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~---g~g~~~rdfi~V~Dva~ai 341 (436)
T PLN02166 265 EGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVY---GDGKQTRSFQYVSDLVDGL 341 (436)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEe---CCCCeEEeeEEHHHHHHHH
Confidence 999999999999988889999999999999997542 34577888899999988877 5788999999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHH
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGL 401 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l 401 (421)
+.+++.. .+++|||++++.+|+.|+++.+.+.+|.+..+.+.+. ...+.....+|++|+++.|||+|+++++++|
T Consensus 342 ~~~~~~~----~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~-~~~~~~~~~~d~~Ka~~~LGw~P~~sl~egl 416 (436)
T PLN02166 342 VALMEGE----HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPN-TADDPHKRKPDISKAKELLNWEPKISLREGL 416 (436)
T ss_pred HHHHhcC----CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCC-CCCCccccccCHHHHHHHcCCCCCCCHHHHH
Confidence 9998754 2469999999999999999999999997665554443 3344456678999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 043169 402 KKFVRWYLSYYGY 414 (421)
Q Consensus 402 ~~~~~~~~~~~~~ 414 (421)
+++++||++....
T Consensus 417 ~~~i~~~~~~~~~ 429 (436)
T PLN02166 417 PLMVSDFRNRILN 429 (436)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999887654
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=323.15 Aligned_cols=307 Identities=26% Similarity=0.434 Sum_probs=268.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+.++++|+||||.||||+||+..|..+|++|+++|...+.... ........++++.+.-|+..+ ++.++
T Consensus 24 p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~----n~~~~~~~~~fel~~hdv~~p-----l~~ev-- 92 (350)
T KOG1429|consen 24 PSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKE----NLEHWIGHPNFELIRHDVVEP-----LLKEV-- 92 (350)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchh----hcchhccCcceeEEEeechhH-----HHHHh--
Confidence 3678999999999999999999999999999999986554333 233344567888888888665 67777
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCC----CCCCCChH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADR----TDQPASLY 242 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~----~~~~~~~Y 242 (421)
|.|+|+|+.+++.....++..++..|+.|+.+++.+|++.+. ||++.||+.|||.....|..|+.+ +..+...|
T Consensus 93 D~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~a--R~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cy 170 (350)
T KOG1429|consen 93 DQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCY 170 (350)
T ss_pred hhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhCc--eEEEeecccccCCcccCCCccccccccCcCCchhhh
Confidence 999999999998888889999999999999999999999993 999999999999987777777654 34577889
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC--CCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHH
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR--PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 320 (421)
...|..+|.++..+.++.|+.+.|.|+.++|||+.. +......|+.+.++++++.++ ++|.++|+|.||+|++++
T Consensus 171 degKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~---g~G~qtRSF~yvsD~Veg 247 (350)
T KOG1429|consen 171 DEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVY---GDGKQTRSFQYVSDLVEG 247 (350)
T ss_pred hHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEE---cCCcceEEEEeHHHHHHH
Confidence 999999999999999999999999999999999764 456788999999999999999 799999999999999999
Q ss_pred HHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHH
Q 043169 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTG 400 (421)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~ 400 (421)
++.+++++. .+.+||++++.+|+.||++++.++.+....+.+.+ +.+++......|.++|++.|||.|+++|+|+
T Consensus 248 ll~Lm~s~~----~~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~-~~~Ddp~kR~pDit~ake~LgW~Pkv~L~eg 322 (350)
T KOG1429|consen 248 LLRLMESDY----RGPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVE-NGPDDPRKRKPDITKAKEQLGWEPKVSLREG 322 (350)
T ss_pred HHHHhcCCC----cCCcccCCccceeHHHHHHHHHHHcCCCcceeecC-CCCCCccccCccHHHHHHHhCCCCCCcHHHh
Confidence 999998773 25599999999999999999999998776665554 4466777788999999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 043169 401 LKKFVRWYLSYYGY 414 (421)
Q Consensus 401 l~~~~~~~~~~~~~ 414 (421)
|+.++.|+++.+..
T Consensus 323 L~~t~~~fr~~i~~ 336 (350)
T KOG1429|consen 323 LPLTVTYFRERIAR 336 (350)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998754
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=358.63 Aligned_cols=322 Identities=24% Similarity=0.316 Sum_probs=248.2
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh-------h------HHHHH-HHhhcCCceEEEEccc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDP-------S------LKKAR-KALLNNHGVFVIEGDI 151 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~------~~~~~-~~~~~~~~v~~~~~Dl 151 (421)
...++|+||||||+||||++|+++|+++|++|++++|....... . ..... .......+++++.+|+
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl 122 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI 122 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence 34788999999999999999999999999999999864321100 0 00000 0011124689999999
Q ss_pred CCHHHHHHHhhccCCcEEEEcccccCchhhccCC---chhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCC
Q 043169 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNP---HSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 152 ~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~---~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~ 228 (421)
+|.+.+.+++++.++|+|||+|+.........++ ...+++|+.|+.+++++|++.+++++||++||..+||... .+
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~ 201 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-ID 201 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CC
Confidence 9999999999988889999999875544443333 4567899999999999999988655899999999998532 22
Q ss_pred CCC-----------CC--CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC---------------
Q 043169 229 FSE-----------AD--RTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD--------------- 280 (421)
Q Consensus 229 ~~e-----------~~--~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~--------------- 280 (421)
.+| ++ .+..|.++|+.||.++|.+++.+++.+|++++++||++||||+....
T Consensus 202 ~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~ 281 (442)
T PLN02572 202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGV 281 (442)
T ss_pred CcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccc
Confidence 222 21 13356789999999999999999988999999999999999986431
Q ss_pred --ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHH-
Q 043169 281 --MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERH- 357 (421)
Q Consensus 281 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~- 357 (421)
..+..++..+..++++.++ +++++.++|+||+|+|++++.++++........+||+++ +.+++.|+++.+.+.
T Consensus 282 ~~~~i~~~~~~~~~g~~i~v~---g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs-~~~si~el~~~i~~~~ 357 (442)
T PLN02572 282 FGTALNRFCVQAAVGHPLTVY---GKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFT-EQFSVNELAKLVTKAG 357 (442)
T ss_pred hhhHHHHHHHHHhcCCCceec---CCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCC-CceeHHHHHHHHHHHH
Confidence 3455677778888888777 678999999999999999999998641111136899986 679999999999999
Q ss_pred --hCCccccceecCC-CCCCCCcccCChHHHHHHcCCCcCC---CHHHHHHHHHHHHHHHhC
Q 043169 358 --LKVKAKKNVIEMP-GNGDVPFTHANISSAQKEFGYRPTT---DLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 358 --~g~~~~~~~~~~~-~~~~~~~~~~d~~ka~~~lG~~p~~---~l~e~l~~~~~~~~~~~~ 413 (421)
+|.+..+...+.+ ...+......|.+|++ +|||+|++ +++|+|.+++.||+++-.
T Consensus 358 ~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LGw~p~~~~~~l~~~l~~~~~~~~~~~~ 418 (442)
T PLN02572 358 EKLGLDVEVISVPNPRVEAEEHYYNAKHTKLC-ELGLEPHLLSDSLLDSLLNFAVKYKDRVD 418 (442)
T ss_pred HhhCCCCCeeeCCCCcccccccccCccHHHHH-HcCCCCCCcHHHHHHHHHHHHHHHHhhcc
Confidence 8876655555433 2233345668999997 59999998 899999999999986543
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=354.99 Aligned_cols=304 Identities=26% Similarity=0.389 Sum_probs=247.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.++|+||||||+||||++|+++|+++|++|++++|......+ .........+++++.+|+.+.. +.+ +|
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~----~~~~~~~~~~~~~i~~D~~~~~-----l~~--~D 185 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKE----NVMHHFSNPNFELIRHDVVEPI-----LLE--VD 185 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchh----hhhhhccCCceEEEECCccChh-----hcC--CC
Confidence 367999999999999999999999999999999875432111 1111223457889999998753 333 59
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCC----CCCCCChHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADR----TDQPASLYA 243 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~----~~~~~~~Y~ 243 (421)
+|||+|+...+.....++...+++|+.|+.+|+++|++.+. ++|++||..+||.....+.+|+.. +..+.+.|+
T Consensus 186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~ 263 (442)
T PLN02206 186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYD 263 (442)
T ss_pred EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECChHHhCCCCCCCCCccccccCCCCCccchHH
Confidence 99999998765445567788999999999999999999884 899999999998766566666531 224467899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC--CCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 244 ATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR--PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
.+|.++|.++..+.+.++++++++||+++|||+.. ....++.++..+..++++.++ +++++.++|+|++|+|+++
T Consensus 264 ~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~---g~G~~~rdfi~V~Dva~ai 340 (442)
T PLN02206 264 EGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY---GDGKQTRSFQFVSDLVEGL 340 (442)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEe---CCCCEEEeEEeHHHHHHHH
Confidence 99999999999998888999999999999999753 334567888888888888877 5788999999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHH
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGL 401 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l 401 (421)
+.+++.. .+++|||++++++++.|+++.+.+.++.+..+...+.. ..+.....+|++|++++|||+|+++++|+|
T Consensus 341 ~~a~e~~----~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~-~~~~~~~~~d~sKa~~~LGw~P~~~l~egl 415 (442)
T PLN02206 341 MRLMEGE----HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNT-EDDPHKRKPDITKAKELLGWEPKVSLRQGL 415 (442)
T ss_pred HHHHhcC----CCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCC-CCCccccccCHHHHHHHcCCCCCCCHHHHH
Confidence 9998754 24689999999999999999999999876655444432 334455678999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 043169 402 KKFVRWYLSYY 412 (421)
Q Consensus 402 ~~~~~~~~~~~ 412 (421)
+++++||++..
T Consensus 416 ~~~~~~~~~~~ 426 (442)
T PLN02206 416 PLMVKDFRQRV 426 (442)
T ss_pred HHHHHHHHHhh
Confidence 99999998755
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=347.39 Aligned_cols=313 Identities=25% Similarity=0.378 Sum_probs=248.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||+++++.|+++|++|+++.++...... ..... ......++.++.+|++|.+++.+++++.++|+||
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGN-LMSLA-PVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccc-hhhhh-hcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 689999999999999999999999886554332221111 11111 1112246888999999999999999987789999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhc---------CCCCeEEEEccccccCCCC--CCCCCCCCCCCCCC
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA---------NPQPSIVWASSSSVYGLNE--NVPFSEADRTDQPA 239 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~---------~~~~riV~~SS~~v~g~~~--~~~~~e~~~~~~~~ 239 (421)
|+||.........+++.++++|+.|+.+++++|++. +. ++||++||.++||... ..+++|+.+. .|.
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~-~~~i~~SS~~vyg~~~~~~~~~~E~~~~-~p~ 157 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSA-FRFHHISTDEVYGDLHSTDDFFTETTPY-APS 157 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCc-eEEEEecchhhcCCCCCCCCCcCCCCCC-CCC
Confidence 999986554445667889999999999999999863 33 4999999999998543 3456676544 678
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHH
Q 043169 240 SLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK 319 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 319 (421)
+.|+.||.++|.+++.++++++++++++||+++|||+..+...++.++..+..++++.++ +++++.++|+|++|+|+
T Consensus 158 s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~D~a~ 234 (355)
T PRK10217 158 SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVY---GNGQQIRDWLYVEDHAR 234 (355)
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEe---CCCCeeeCcCcHHHHHH
Confidence 899999999999999998888999999999999999876666677788888888887776 57889999999999999
Q ss_pred HHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccce-----------ecCCCCCCCCcccCChHHHHHH
Q 043169 320 GCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNV-----------IEMPGNGDVPFTHANISSAQKE 388 (421)
Q Consensus 320 a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~-----------~~~~~~~~~~~~~~d~~ka~~~ 388 (421)
+++.+++.. ..+++|||++++++++.|+++.+.+.++...+... ....++.......+|++|++++
T Consensus 235 a~~~~~~~~---~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 311 (355)
T PRK10217 235 ALYCVATTG---KVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYAIDASKIARE 311 (355)
T ss_pred HHHHHHhcC---CCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcccccCHHHHHHh
Confidence 999999764 34689999999999999999999999875321100 0111233445567899999999
Q ss_pred cCCCcCCCHHHHHHHHHHHHHHHhC
Q 043169 389 FGYRPTTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 389 lG~~p~~~l~e~l~~~~~~~~~~~~ 413 (421)
|||+|+++++|+|+++++||+++.+
T Consensus 312 lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 312 LGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred cCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 9999999999999999999998754
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=346.17 Aligned_cols=313 Identities=21% Similarity=0.268 Sum_probs=248.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChh-HHHHHHH--hhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPS-LKKARKA--LLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~--~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+||||||+||||++|+++|+++|++|++++|+.+..... ....... .....++.++.+|++|.+++.++++.+++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999999976432111 1111000 001246899999999999999999988899
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCC--CeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ--PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+|||+|+.........++...+++|+.|+.+++++|++.+.+ ++||++||.++||.....+++|+.+. .|.++|+.|
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 159 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPF-YPRSPYAAA 159 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCC-CCCChhHHH
Confidence 999999986554444556778899999999999999987753 38999999999997666677777654 678999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC---ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD---MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL 322 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 322 (421)
|.++|.+++.+++++|++++..|+.++|||+.... ..+..++..+..+++..++. +++++.++|+||+|+|++++
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~g~~~rd~i~V~D~a~a~~ 237 (343)
T TIGR01472 160 KLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYL--GNLDAKRDWGHAKDYVEAMW 237 (343)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceee--CCCccccCceeHHHHHHHHH
Confidence 99999999999988899999999999999975432 22344555666676433322 57889999999999999999
Q ss_pred HhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccc-------------------eecC-CCCCCCCcccCCh
Q 043169 323 GSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKN-------------------VIEM-PGNGDVPFTHANI 382 (421)
Q Consensus 323 ~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~-------------------~~~~-~~~~~~~~~~~d~ 382 (421)
.+++.+. +++|||++++++|++|+++.+.+.+|.+..+. ..+. .++++......|+
T Consensus 238 ~~~~~~~----~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 313 (343)
T TIGR01472 238 LMLQQDK----PDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVDLLLGDA 313 (343)
T ss_pred HHHhcCC----CccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCCCccchhcCCH
Confidence 9997652 36899999999999999999999999654211 0111 1345556667899
Q ss_pred HHHHHHcCCCcCCCHHHHHHHHHHHHHH
Q 043169 383 SSAQKEFGYRPTTDLQTGLKKFVRWYLS 410 (421)
Q Consensus 383 ~ka~~~lG~~p~~~l~e~l~~~~~~~~~ 410 (421)
+|++++|||+|+++++|+|+++++|+++
T Consensus 314 ~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 314 TKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999985
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=343.86 Aligned_cols=319 Identities=21% Similarity=0.239 Sum_probs=255.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh-hHHHHHH-HhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDP-SLKKARK-ALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.++|+||||||+||||++++++|+++|++|++++|+.+.... ....... ......++.++.+|++|.+++.++++.+
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 3578999999999999999999999999999999986543211 1111110 0111246889999999999999999988
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCC----CeEEEEccccccCCCCCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ----PSIVWASSSSVYGLNENVPFSEADRTDQPAS 240 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~ 240 (421)
++|+|||+||.........++...+++|+.|+.+++++|++.+.. .+||++||.++||.... +++|+.+. .|.+
T Consensus 83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~~~~-~p~~ 160 (340)
T PLN02653 83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSETTPF-HPRS 160 (340)
T ss_pred CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCCCCC-CCCC
Confidence 899999999987655455667788899999999999999988753 28999999999997654 67776654 6789
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC---hHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHH
Q 043169 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDM---AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 317 (421)
.|+.||.++|.+++.+++++++.++..|+.++|||+..... .+..++..+..+++..++. +++++.++|+|++|+
T Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~g~~~rd~i~v~D~ 238 (340)
T PLN02653 161 PYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFL--GNLDASRDWGFAGDY 238 (340)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEe--CCCcceecceeHHHH
Confidence 99999999999999999889999999999999999754432 2334455666776655443 578899999999999
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCcc--ccceecC-CCCCCCCcccCChHHHHHHcCCCcC
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKA--KKNVIEM-PGNGDVPFTHANISSAQKEFGYRPT 394 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~--~~~~~~~-~~~~~~~~~~~d~~ka~~~lG~~p~ 394 (421)
|++++.+++... ++.|||++++++++.|+++.+.+.+|.+. .....+. ..+.+......|++|++++|||+|+
T Consensus 239 a~a~~~~~~~~~----~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~ 314 (340)
T PLN02653 239 VEAMWLMLQQEK----PDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLGWKPK 314 (340)
T ss_pred HHHHHHHHhcCC----CCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHHHHhCCCCC
Confidence 999999998641 46899999999999999999999998642 1222221 2345566677899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC
Q 043169 395 TDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 395 ~~l~e~l~~~~~~~~~~~~ 413 (421)
++++|+|+++++||++..+
T Consensus 315 ~~l~~gi~~~~~~~~~~~~ 333 (340)
T PLN02653 315 VGFEQLVKMMVDEDLELAK 333 (340)
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 9999999999999997665
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=342.36 Aligned_cols=318 Identities=24% Similarity=0.251 Sum_probs=252.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+++|+||||||+||||+++++.|+++|++|++++|+........... ....++.++.+|++|.+++.+++++.++|
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 77 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELL----NLAKKIEDHFGDIRDAAKLRKAIAEFKPE 77 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHH----hhcCCceEEEccCCCHHHHHHHHhhcCCC
Confidence 36799999999999999999999999999999998765332211111 11246778999999999999999988899
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCC-CCCCCCCCCCCCCCChHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNE-NVPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~-~~~~~e~~~~~~~~~~Y~~sK 246 (421)
+|||+||......+..++...+++|+.|+.++++++++.+..++||++||..+|+... ..+++|+.+. .|.++|+.||
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~-~p~~~Y~~sK 156 (349)
T TIGR02622 78 IVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPL-GGHDPYSSSK 156 (349)
T ss_pred EEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCC-CCCCcchhHH
Confidence 9999999755544556778899999999999999998876334999999999998643 2356665543 5788999999
Q ss_pred HHHHHHHHHHHHHh-------CCcEEEEEeccccCCCCC-CCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHH
Q 043169 247 KAGEEIAHTYNHIY-------GLSITGLRFFTVYGPWGR-PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV 318 (421)
Q Consensus 247 ~~~e~~~~~~~~~~-------gi~~~~vrp~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 318 (421)
.++|.+++.+++++ |++++++||+++|||+.. ....++.+++.+..++++.+ +++++.++|+|++|+|
T Consensus 157 ~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~----~~g~~~rd~i~v~D~a 232 (349)
T TIGR02622 157 ACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVII----RNPDATRPWQHVLEPL 232 (349)
T ss_pred HHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEE----CCCCcccceeeHHHHH
Confidence 99999999988764 899999999999999753 34567888898988888776 3678999999999999
Q ss_pred HHHHHhhhcCC-C-CCCceEEEecCC--CccCHHHHHHHHHHHhCC-ccccceecC-CCCCCCCcccCChHHHHHHcCCC
Q 043169 319 KGCLGSLDTSA-G-PAPYRIFNLGNT--SPVTVPKLVNILERHLKV-KAKKNVIEM-PGNGDVPFTHANISSAQKEFGYR 392 (421)
Q Consensus 319 ~a~~~~l~~~~-~-~~~~~~~~i~~~--~~~t~~el~~~l~~~~g~-~~~~~~~~~-~~~~~~~~~~~d~~ka~~~lG~~ 392 (421)
++++.+++... . ...+++|||+++ +++++.|+++.+.+.++. +..+...+. .+..+.....+|++|++++|||+
T Consensus 233 ~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~ 312 (349)
T TIGR02622 233 SGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTLLGWH 312 (349)
T ss_pred HHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHHHHHhCCC
Confidence 99998876421 1 123579999974 689999999999887764 222222111 12344455678999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhCC
Q 043169 393 PTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 393 p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
|+++++++|+++++|++++...
T Consensus 313 p~~~l~~gi~~~i~w~~~~~~~ 334 (349)
T TIGR02622 313 PRWGLEEAVSRTVDWYKAWLRG 334 (349)
T ss_pred CCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999987553
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=348.71 Aligned_cols=314 Identities=21% Similarity=0.309 Sum_probs=242.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHh--hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKAL--LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.+.|+||||||+||||++|+++|+++ |++|++++|+.+... ...... ....+++++.+|++|.+.+.++++++
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~----~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIK----HLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhh----hhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 56689999999999999999999998 599999998543211 100000 01246999999999999999999876
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCC----------
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADR---------- 234 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~---------- 234 (421)
|+|||+|+...+.....++...+..|+.++.+++++|++.+ + +||++||..+||.....+..|+.+
T Consensus 88 --d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~-r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~ 163 (386)
T PLN02427 88 --DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-K-RLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVL 163 (386)
T ss_pred --CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-C-EEEEEeeeeeeCCCcCCCCCcccccccccccccc
Confidence 99999999765433344566677899999999999999877 4 999999999998643322222211
Q ss_pred -----C------CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC-----------CChHHHHHHHHHc
Q 043169 235 -----T------DQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP-----------DMAYFSFTRNILQ 292 (421)
Q Consensus 235 -----~------~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~-----------~~~~~~~~~~~~~ 292 (421)
+ ..+.+.|+.||.++|.++..+++.+|++++++||++||||+... ...+..++..+.+
T Consensus 164 ~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 243 (386)
T PLN02427 164 KEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLR 243 (386)
T ss_pred cccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhc
Confidence 0 12346799999999999999988889999999999999997531 1244556677888
Q ss_pred CCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC-CccCHHHHHHHHHHHhCCccc-----cce
Q 043169 293 GKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT-SPVTVPKLVNILERHLKVKAK-----KNV 366 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~-~~~t~~el~~~l~~~~g~~~~-----~~~ 366 (421)
++++.++ +++++.++|+|++|+|++++.+++++. ...+++||++++ +++++.|+++.+.+.+|.... ...
T Consensus 244 ~~~~~~~---g~g~~~r~~i~V~Dva~ai~~al~~~~-~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~ 319 (386)
T PLN02427 244 REPLKLV---DGGQSQRTFVYIKDAIEAVLLMIENPA-RANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPT 319 (386)
T ss_pred CCCeEEE---CCCCceECcEeHHHHHHHHHHHHhCcc-cccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccc
Confidence 8888776 567889999999999999999998652 134689999987 589999999999999985211 111
Q ss_pred ecCC-------CCCCCCcccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhC
Q 043169 367 IEMP-------GNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 367 ~~~~-------~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 413 (421)
+..+ ...+......|.+|++++|||+|+++++++|+++++|+++.+-
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~ 373 (386)
T PLN02427 320 VDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYA 373 (386)
T ss_pred cccCcccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHH
Confidence 1111 1123455678999999999999999999999999999999873
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=340.09 Aligned_cols=310 Identities=23% Similarity=0.361 Sum_probs=247.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC-CHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN-DAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~~~d~ 168 (421)
|+||||||+||||++|+++|+++ |++|++++|+... ........+++++.+|++ +.+.+.++++++ |+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~--------~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--d~ 71 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR--------LGDLVNHPRMHFFEGDITINKEWIEYHVKKC--DV 71 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH--------HHHhccCCCeEEEeCCCCCCHHHHHHHHcCC--CE
Confidence 68999999999999999999986 6999999984321 111122356999999998 778888888765 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCC------CCCCChH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRT------DQPASLY 242 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~------~~~~~~Y 242 (421)
|||+|+...+.....+++..+++|+.|+.+++++|++.+ + ++|++||..+||.....++.|++.+ ..|.+.|
T Consensus 72 ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~-~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y 149 (347)
T PRK11908 72 ILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIY 149 (347)
T ss_pred EEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-C-eEEEEecceeeccCCCcCcCccccccccCcCCCccchH
Confidence 999999866554567888899999999999999999887 4 9999999999986655566666532 1356789
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
+.+|.++|.+++.+.+.+|++++++||+++|||+... ...+..++..+..++++.++ +++++.++|+|+
T Consensus 150 ~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~g~~~r~~i~v 226 (347)
T PRK11908 150 ACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLV---DGGSQKRAFTDI 226 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEe---cCCceeeccccH
Confidence 9999999999999988889999999999999997432 34567788888889888766 467899999999
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCC-CccCHHHHHHHHHHHhCCcccc-------ceecCCC-------CCCCCccc
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNT-SPVTVPKLVNILERHLKVKAKK-------NVIEMPG-------NGDVPFTH 379 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~-~~~t~~el~~~l~~~~g~~~~~-------~~~~~~~-------~~~~~~~~ 379 (421)
+|++++++.+++.+.....+++|||+++ ..+|++|+++.+.+.++..... .....+. ..+.....
T Consensus 227 ~D~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (347)
T PRK11908 227 DDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRV 306 (347)
T ss_pred HHHHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcchhcccc
Confidence 9999999999987522245789999987 4799999999999999853322 1111111 11223455
Q ss_pred CChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhCCC
Q 043169 380 ANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYN 415 (421)
Q Consensus 380 ~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~ 415 (421)
.|++|+++.|||+|+++++|+|+++++|++++....
T Consensus 307 ~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~~~~ 342 (347)
T PRK11908 307 PKIDNTMQELGWAPKTTMDDALRRIFEAYRGHVAEA 342 (347)
T ss_pred CChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999876544
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=308.91 Aligned_cols=311 Identities=27% Similarity=0.424 Sum_probs=261.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR--GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+.|+||||.||||++.+..+... .++.+.++...=-.. . .........++..++++|+.+...+.-.+..-++|.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~--~-~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~ 83 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN--L-KNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDT 83 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc--c-chhhhhccCCCceEeeccccchHHHHhhhccCchhh
Confidence 78999999999999999999887 355555543221111 1 111222345889999999999999999998888999
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCC-CCCCCCCCCChHHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFS-EADRTDQPASLYAATKK 247 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~-e~~~~~~~~~~Y~~sK~ 247 (421)
|||.|+....+.+..++....+.|+.++..|+++++..|..++|||+||..|||.+++.... |.+. ..|.++|++||+
T Consensus 84 vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~-~nPtnpyAasKa 162 (331)
T KOG0747|consen 84 VIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASL-LNPTNPYAASKA 162 (331)
T ss_pred hhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccccccc-CCCCCchHHHHH
Confidence 99999998888788888899999999999999999999766799999999999998887776 4444 488999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhc
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 327 (421)
++|.+++++.+.+|++++++|.++||||++.+...++.|++....+++.++. |+|.+.++|+|++|+++|+..+++.
T Consensus 163 AaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~---g~g~~~rs~l~veD~~ea~~~v~~K 239 (331)
T KOG0747|consen 163 AAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIH---GDGLQTRSYLYVEDVSEAFKAVLEK 239 (331)
T ss_pred HHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCccee---cCcccceeeEeHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999989999998887 7899999999999999999999987
Q ss_pred CCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccc-------cceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHH
Q 043169 328 SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK-------KNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTG 400 (421)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-------~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~ 400 (421)
+ ..|++|||+++.+.+..|+++.+.+.+..... +.+++ .++-......++.+|++ .|||+|+++++||
T Consensus 240 g---~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~-dRp~nd~Ry~~~~eKik-~LGw~~~~p~~eG 314 (331)
T KOG0747|consen 240 G---ELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVE-DRPYNDLRYFLDDEKIK-KLGWRPTTPWEEG 314 (331)
T ss_pred C---CccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecC-CCCcccccccccHHHHH-hcCCcccCcHHHH
Confidence 5 46899999999999999999999988876332 11112 12223333568999998 8999999999999
Q ss_pred HHHHHHHHHHHhC
Q 043169 401 LKKFVRWYLSYYG 413 (421)
Q Consensus 401 l~~~~~~~~~~~~ 413 (421)
|+.+++||.++.+
T Consensus 315 Lrktie~y~~~~~ 327 (331)
T KOG0747|consen 315 LRKTIEWYTKNFK 327 (331)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999999873
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=332.90 Aligned_cols=323 Identities=25% Similarity=0.379 Sum_probs=250.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
++.+|+|+||||+||||++++++|+++|++|++++|................ ....++.++.+|++|.+.+.++++..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 3678999999999999999999999999999999875433222111111111 112468899999999999999998778
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+|+|||+||.........++...+++|+.++.+++++|++.+.+ +||++||.++|+.....+++|+.+. .+.+.|+.+
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~vyg~~~~~~~~E~~~~-~~~~~Y~~s 159 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSSSATVYGQPEEVPCTEEFPL-SATNPYGRT 159 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCCCCCCCC-CCCCHHHHH
Confidence 89999999975433344567789999999999999999988865 9999999999987666678887655 677899999
Q ss_pred HHHHHHHHHHHHHH-hCCcEEEEEeccccCCCCC------CC---ChHHHHHHHHHcCC--CeEEEec---CCCCcceee
Q 043169 246 KKAGEEIAHTYNHI-YGLSITGLRFFTVYGPWGR------PD---MAYFSFTRNILQGK--PITVYRG---KNHVDLARD 310 (421)
Q Consensus 246 K~~~e~~~~~~~~~-~gi~~~~vrp~~v~G~~~~------~~---~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~ 310 (421)
|.++|.+++.+.+. .+++++++|++++||++.. +. ..+..++..+..++ .+.++.. .+++.+.++
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 239 (352)
T PLN02240 160 KLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRD 239 (352)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEe
Confidence 99999999998754 5799999999999997431 11 11223444555443 3444321 126789999
Q ss_pred cccHHHHHHHHHHhhhcC--CCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHH
Q 043169 311 FTYIDDIVKGCLGSLDTS--AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKE 388 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~--~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~ 388 (421)
|+|++|+|++++.++... .....+++||+++++++|++|+++.+.+.+|.+.++...+. ...+......|++|++++
T Consensus 240 ~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~ 318 (352)
T PLN02240 240 YIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPR-RPGDAEEVYASTEKAEKE 318 (352)
T ss_pred eEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCC-CCCChhhhhcCHHHHHHH
Confidence 999999999999888643 11234689999999999999999999999997765544442 334445556899999999
Q ss_pred cCCCcCCCHHHHHHHHHHHHHHHh
Q 043169 389 FGYRPTTDLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 389 lG~~p~~~l~e~l~~~~~~~~~~~ 412 (421)
|||+|+++++|+|+++++|++++.
T Consensus 319 lg~~p~~~l~~~l~~~~~~~~~~~ 342 (352)
T PLN02240 319 LGWKAKYGIDEMCRDQWNWASKNP 342 (352)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999875
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=327.42 Aligned_cols=312 Identities=27% Similarity=0.416 Sum_probs=250.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+||||+|+||++++++|+++| ++|++++|........ . ........++.++.+|++|++++.++++..++|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLE--N-LADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhh--h-hhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 48999999999999999999987 7898887643211111 1 11111234788999999999999999998778999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCC-CCCCCCCCCCCCChHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENV-PFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~-~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
||+|+.........+++.++++|+.|+.+++++|++.+.+.++|++||..+||..... ++.|+.+. .+.+.|+.+|..
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~-~~~~~Y~~sK~~ 156 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPL-APSSPYSASKAA 156 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCC-CCCCchHHHHHH
Confidence 9999986655555677788999999999999999987544489999999999865443 56666544 567899999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
+|.+++.+.++.+++++++||+.+|||.......++.++..+..++++.++ +++++.++|+|++|+|+++..+++..
T Consensus 157 ~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~D~a~~~~~~~~~~ 233 (317)
T TIGR01181 157 SDHLVRAYHRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVY---GDGQQVRDWLYVEDHCRAIYLVLEKG 233 (317)
T ss_pred HHHHHHHHHHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEe---CCCceEEeeEEHHHHHHHHHHHHcCC
Confidence 999999998888999999999999999876666777888888888887776 56788999999999999999999754
Q ss_pred CCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHHHHHHH
Q 043169 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWY 408 (421)
Q Consensus 329 ~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~ 408 (421)
..+++||+++++++++.|+++.+.+.+|.+...................|++|+++.|||.|+++++|+++++++||
T Consensus 234 ---~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~~~ 310 (317)
T TIGR01181 234 ---RVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFEEGLRKTVQWY 310 (317)
T ss_pred ---CCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999999999996432211111122233334689999999999999999999999999999
Q ss_pred HHHhC
Q 043169 409 LSYYG 413 (421)
Q Consensus 409 ~~~~~ 413 (421)
+++.+
T Consensus 311 ~~~~~ 315 (317)
T TIGR01181 311 LDNEW 315 (317)
T ss_pred HhccC
Confidence 87654
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=359.82 Aligned_cols=312 Identities=21% Similarity=0.336 Sum_probs=249.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHH-HHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKL-LAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-~~~~~~~~~ 165 (421)
-++|+||||||+||||++|+++|+++ |++|++++|..... .......+++++.+|++|.+. ++++++++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~--------~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~- 383 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAI--------SRFLGHPRFHFVEGDISIHSEWIEYHIKKC- 383 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhh--------hhhcCCCceEEEeccccCcHHHHHHHhcCC-
Confidence 36789999999999999999999986 79999999854211 111223578999999998655 57777755
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCC------CCCC
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRT------DQPA 239 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~------~~~~ 239 (421)
|+|||+||...+.....++...+++|+.++.+++++|++.+ + +|||+||..+||.....+++|+.+. ..+.
T Consensus 384 -D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~ 460 (660)
T PRK08125 384 -DVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQR 460 (660)
T ss_pred -CEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchhhcCCCCCCCcCccccccccCCCCCCc
Confidence 99999999876654556677889999999999999999987 4 9999999999997655567776532 1245
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 240 SLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+.|+.||.++|.+++.+.+.+|++++++||+++|||+... ...++.++..+..++++.++ +++++.++|
T Consensus 461 s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~---g~g~~~rd~ 537 (660)
T PRK08125 461 WIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLV---DGGKQKRCF 537 (660)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEe---CCCceeece
Confidence 6899999999999999988889999999999999997532 34577888888888888776 578899999
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC-ccCHHHHHHHHHHHhCCccccceecCCC--------------CCCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS-PVTVPKLVNILERHLKVKAKKNVIEMPG--------------NGDVP 376 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~-~~t~~el~~~l~~~~g~~~~~~~~~~~~--------------~~~~~ 376 (421)
+|++|+|++++.++++......+++|||++++ .+|++|+++.+.+.+|........+... ..+..
T Consensus 538 i~v~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (660)
T PRK08125 538 TDIRDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQDVE 617 (660)
T ss_pred eeHHHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCcccccccccccccccccccccc
Confidence 99999999999999865222357899999985 7999999999999998542111111100 11333
Q ss_pred cccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhCC
Q 043169 377 FTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 377 ~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
....|++|+++.|||+|+++++|+|+++++||+++.+-
T Consensus 618 ~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~ 655 (660)
T PRK08125 618 HRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_pred ccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhcccc
Confidence 45679999999999999999999999999999988764
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=331.44 Aligned_cols=312 Identities=25% Similarity=0.415 Sum_probs=244.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
|+||||||+||||++|+++|+++|++ |+++++...... ..... ......++.++.+|++|.+++.+++++.++|+|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGN--LESLA-DVSDSERYVFEHADICDRAELDRIFAQHQPDAV 77 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccch--HHHHH-hcccCCceEEEEecCCCHHHHHHHHHhcCCCEE
Confidence 57999999999999999999999976 555554321111 11111 111134678899999999999999988778999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhc--------CCCCeEEEEccccccCCCCC----------CCCCC
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA--------NPQPSIVWASSSSVYGLNEN----------VPFSE 231 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~--------~~~~riV~~SS~~v~g~~~~----------~~~~e 231 (421)
||+||.........+++.++++|+.|+.+++++|++. +..+++|++||.++||.... .+++|
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E 157 (352)
T PRK10084 78 MHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTE 157 (352)
T ss_pred EECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccc
Confidence 9999976443344567889999999999999999874 11238999999999985321 13456
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+.+. .|.+.|+.||.++|.+++.+++++|++++++||++||||+......++.++..+..+.++.++ +++++.++|
T Consensus 158 ~~~~-~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~ 233 (352)
T PRK10084 158 TTAY-APSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDW 233 (352)
T ss_pred cCCC-CCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEe---CCCCeEEee
Confidence 5544 678899999999999999998889999999999999999865555677777778888877776 578899999
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccc------ee-cCCCCCCCCcccCChHH
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKN------VI-EMPGNGDVPFTHANISS 384 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~------~~-~~~~~~~~~~~~~d~~k 384 (421)
+|++|+|++++.+++.. ..+++||+++++++++.|+++.+.+.++...+.. .. ....+.......+|++|
T Consensus 234 v~v~D~a~a~~~~l~~~---~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~k 310 (352)
T PRK10084 234 LYVEDHARALYKVVTEG---KAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDASK 310 (352)
T ss_pred EEHHHHHHHHHHHHhcC---CCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCCceeeeCHHH
Confidence 99999999999998754 3478999999999999999999999998532111 00 01122333445689999
Q ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHHHh
Q 043169 385 AQKEFGYRPTTDLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 385 a~~~lG~~p~~~l~e~l~~~~~~~~~~~ 412 (421)
++++|||+|+++++|+|+++++||+++.
T Consensus 311 ~~~~lg~~p~~~l~~~l~~~~~~~~~~~ 338 (352)
T PRK10084 311 ISRELGWKPQETFESGIRKTVEWYLANT 338 (352)
T ss_pred HHHHcCCCCcCCHHHHHHHHHHHHHhCH
Confidence 9999999999999999999999999853
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=329.17 Aligned_cols=304 Identities=24% Similarity=0.342 Sum_probs=243.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|+||||||+||||+++++.|.++|++|++++|..+.... .....+.++.+|++|.+.+.++++++ |+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~--D~ 88 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS---------EDMFCHEFHLVDLRVMENCLKVTKGV--DH 88 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccc---------cccccceEEECCCCCHHHHHHHHhCC--CE
Confidence 67899999999999999999999999999999985321100 01123578899999999988888765 99
Q ss_pred EEEcccccCc-hhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC----CCCCCCCC-CCCCCChH
Q 043169 169 VMHLAAQAGV-RYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN----VPFSEADR-TDQPASLY 242 (421)
Q Consensus 169 vi~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~----~~~~e~~~-~~~~~~~Y 242 (421)
|||+|+.... .....++...+..|+.++.+|+++|++.+++ +||++||..+|+.... .++.|++. +..|.+.|
T Consensus 89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Y 167 (370)
T PLN02695 89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAY 167 (370)
T ss_pred EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHH
Confidence 9999986532 1223345566789999999999999998875 9999999999986532 23555542 44678899
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CChHHHHHHHHHc-CCCeEEEecCCCCcceeecccHHHH
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP----DMAYFSFTRNILQ-GKPITVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~Dv 317 (421)
+.+|.++|.+++.+.+.+|++++++||+++|||+... ......++..+.+ +.++.++ +++++.++|+|++|+
T Consensus 168 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---g~g~~~r~~i~v~D~ 244 (370)
T PLN02695 168 GLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMW---GDGKQTRSFTFIDEC 244 (370)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEe---CCCCeEEeEEeHHHH
Confidence 9999999999999988889999999999999997542 2235567776665 4667776 578999999999999
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCH
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDL 397 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l 397 (421)
+++++.+++.. .+++||++++++++++|+++.+.+..|.+.++...+.+ ........|++|+++.|||+|++++
T Consensus 245 a~ai~~~~~~~----~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~--~~~~~~~~d~sk~~~~lgw~p~~~l 318 (370)
T PLN02695 245 VEGVLRLTKSD----FREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGP--EGVRGRNSDNTLIKEKLGWAPTMRL 318 (370)
T ss_pred HHHHHHHHhcc----CCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCC--CCccccccCHHHHHHhcCCCCCCCH
Confidence 99999987754 25789999999999999999999999976554444432 2233456899999999999999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 043169 398 QTGLKKFVRWYLSYYG 413 (421)
Q Consensus 398 ~e~l~~~~~~~~~~~~ 413 (421)
+|+|+++++||+++..
T Consensus 319 ~e~i~~~~~~~~~~~~ 334 (370)
T PLN02695 319 KDGLRITYFWIKEQIE 334 (370)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=323.91 Aligned_cols=318 Identities=26% Similarity=0.429 Sum_probs=246.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||+++++.|+++|++|++++|........... .......++.++.+|++|.+++.++++..++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPV--IERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHH--HHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 5799999999999999999999999999998754322211111 11122345788999999999999999876789999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+||.........++...+++|+.++.+++++|++.+++ +||++||..+||.....+++|+.+...|.+.|+.+|.++|
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 157 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHH
Confidence 999976433333456678999999999999999998865 9999999999987666678777765457889999999999
Q ss_pred HHHHHHHHHh-CCcEEEEEeccccCCCCC------C----CChHHHHHHHHHcCC--CeEEEe---cCCCCcceeecccH
Q 043169 251 EIAHTYNHIY-GLSITGLRFFTVYGPWGR------P----DMAYFSFTRNILQGK--PITVYR---GKNHVDLARDFTYI 314 (421)
Q Consensus 251 ~~~~~~~~~~-gi~~~~vrp~~v~G~~~~------~----~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~i~v 314 (421)
.+++.++++. +++++++|++++|||... . .... .++..+..+. .+.++. ...++++.++|+|+
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v 236 (338)
T PRK10675 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLM-PYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236 (338)
T ss_pred HHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHH-HHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEH
Confidence 9999998764 799999999999997421 1 1122 2334444432 244432 11256889999999
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPT 394 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~ 394 (421)
+|+|++++.+++.......+++||+++++++|++|+++.+.+.+|.+.+....+ ....+......|++|+++.+||+|+
T Consensus 237 ~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~~~~k~~~~lg~~p~ 315 (338)
T PRK10675 237 MDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAP-RREGDLPAYWADASKADRELNWRVT 315 (338)
T ss_pred HHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCC-CCCCchhhhhcCHHHHHHHhCCCCc
Confidence 999999999987531223468999999999999999999999999876544333 2333445667899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC
Q 043169 395 TDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 395 ~~l~e~l~~~~~~~~~~~~ 413 (421)
++++++|+++++|++++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~ 334 (338)
T PRK10675 316 RTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_pred CcHHHHHHHHHHHHHhhhh
Confidence 9999999999999998743
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=323.41 Aligned_cols=307 Identities=16% Similarity=0.166 Sum_probs=230.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|+||||||+||||++++++|+++|++|++++|+........ ..........+++++.+|++|.+++.++++++ |+
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~--d~ 80 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTD-HLLALDGAKERLKLFKADLLDEGSFELAIDGC--ET 80 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHH-HHHhccCCCCceEEEeCCCCCchHHHHHHcCC--CE
Confidence 5789999999999999999999999999999988765432211 11110111246889999999999999999865 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCC-----CCCCCCCCCCCC-----C
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNE-----NVPFSEADRTDQ-----P 238 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~-----~~~~~e~~~~~~-----~ 238 (421)
||||||.........++...+++|+.|+.+++++|.+....++||++||..+|+... ..+++|+.+..+ +
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 160 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEER 160 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccc
Confidence 999999754333334556789999999999999998753234999999988765422 234666654421 2
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD-MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 317 (421)
.+.|+.||.++|.++..+.+++|++++++||+++|||+..+. .....++..+..++... +...++|+|++|+
T Consensus 161 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~-------~~~~r~~i~v~Dv 233 (325)
T PLN02989 161 KQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPF-------NTTHHRFVDVRDV 233 (325)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCC-------CCcCcCeeEHHHH
Confidence 467999999999999999988899999999999999987643 23445566666665431 1245789999999
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecC-CCCCCCCcccCChHHHHHHcCCCcCCC
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM-PGNGDVPFTHANISSAQKEFGYRPTTD 396 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~ka~~~lG~~p~~~ 396 (421)
|++++.+++.+. .+++||++ +.++|++|+++.+.+.++... ....+. ....+......|++|+++ |||.|+++
T Consensus 234 a~a~~~~l~~~~---~~~~~ni~-~~~~s~~ei~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~-lg~~p~~~ 307 (325)
T PLN02989 234 ALAHVKALETPS---ANGRYIID-GPVVTIKDIENVLREFFPDLC-IADRNEDITELNSVTFNVCLDKVKS-LGIIEFTP 307 (325)
T ss_pred HHHHHHHhcCcc---cCceEEEe-cCCCCHHHHHHHHHHHCCCCC-CCCCCCCcccccccCcCCCHHHHHH-cCCCCCCC
Confidence 999999998752 24689995 568999999999999998421 110000 011122355788999875 99999999
Q ss_pred HHHHHHHHHHHHHHH
Q 043169 397 LQTGLKKFVRWYLSY 411 (421)
Q Consensus 397 l~e~l~~~~~~~~~~ 411 (421)
++|+|+++++||++.
T Consensus 308 l~~gi~~~~~~~~~~ 322 (325)
T PLN02989 308 TETSLRDTVLSLKEK 322 (325)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999754
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=351.04 Aligned_cols=315 Identities=26% Similarity=0.387 Sum_probs=251.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR--GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.++|+||||||+||||++|+++|+++ |++|++++|.... ....... ......+++++.+|++|.+.+.+++...+
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~--~~~~~l~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 80 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYC--SNLKNLN-PSKSSPNFKFVKGDIASADLVNYLLITEG 80 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCcc--chhhhhh-hcccCCCeEEEECCCCChHHHHHHHhhcC
Confidence 36789999999999999999999998 6889999874211 1111111 11123579999999999999888876667
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCC---CCCCCCCCCCCChH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVP---FSEADRTDQPASLY 242 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~---~~e~~~~~~~~~~Y 242 (421)
+|+|||+|+.........++..++++|+.|+.+++++|++.+..++||++||..+||.....+ ..|+.+. .|.+.|
T Consensus 81 ~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~-~p~~~Y 159 (668)
T PLN02260 81 IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQL-LPTNPY 159 (668)
T ss_pred CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCC-CCCCCc
Confidence 899999999876554455667888999999999999999987334999999999999765432 2344433 577899
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHH
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL 322 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 322 (421)
+.+|.++|.+++.+.++++++++++||++||||+......++.++..+..++++.++ +++++.++|+|++|+|++++
T Consensus 160 ~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~---g~g~~~r~~ihV~Dva~a~~ 236 (668)
T PLN02260 160 SATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIH---GDGSNVRSYLYCEDVAEAFE 236 (668)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEe---cCCCceEeeEEHHHHHHHHH
Confidence 999999999999998888999999999999999876666777888888888888876 57889999999999999999
Q ss_pred HhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceec-CCCCCCCCcccCChHHHHHHcCCCcCCCHHHHH
Q 043169 323 GSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE-MPGNGDVPFTHANISSAQKEFGYRPTTDLQTGL 401 (421)
Q Consensus 323 ~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~-~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l 401 (421)
.+++.. ..+++||+++++++++.|+++.+.+.+|.+....... ..++.......+|++|++ +|||+|+++++|+|
T Consensus 237 ~~l~~~---~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~-~lGw~p~~~~~egl 312 (668)
T PLN02260 237 VVLHKG---EVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLK-KLGWQERTSWEEGL 312 (668)
T ss_pred HHHhcC---CCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHH-HcCCCCCCCHHHHH
Confidence 998754 3468999999999999999999999999754321111 112333344568999996 69999999999999
Q ss_pred HHHHHHHHHHhC
Q 043169 402 KKFVRWYLSYYG 413 (421)
Q Consensus 402 ~~~~~~~~~~~~ 413 (421)
+++++||+++-.
T Consensus 313 ~~~i~w~~~~~~ 324 (668)
T PLN02260 313 KKTMEWYTSNPD 324 (668)
T ss_pred HHHHHHHHhChh
Confidence 999999998644
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=320.24 Aligned_cols=300 Identities=19% Similarity=0.235 Sum_probs=228.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+++|+||||||+||||++++++|+++|++|++++|+.+...... .........++.++.+|++|.+++.++++++ |
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 83 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTH--LRELEGGKERLILCKADLQDYEALKAAIDGC--D 83 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHH--HHHhhCCCCcEEEEecCcCChHHHHHHHhcC--C
Confidence 46789999999999999999999999999999999654321110 0110111246889999999999999999876 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc-cccCCCCC---CCCCCCCC-----CCCC
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS-SVYGLNEN---VPFSEADR-----TDQP 238 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~-~v~g~~~~---~~~~e~~~-----~~~~ 238 (421)
+|||+|+... .++...+++|+.|+.+++++|++.+++ |||++||. ++||.... .+++|+++ +..+
T Consensus 84 ~Vih~A~~~~-----~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p 157 (342)
T PLN02214 84 GVFHTASPVT-----DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNT 157 (342)
T ss_pred EEEEecCCCC-----CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCCcccCcccCCChhhcccc
Confidence 9999999642 456788999999999999999998865 99999996 58874332 24666642 2235
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC--ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD--MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDD 316 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 316 (421)
.+.|+.||.++|.+++.+.+++|++++++||++||||+.... ..+..++ .+..+.... + ++..++|+|++|
T Consensus 158 ~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~-~~~~g~~~~-~-----~~~~~~~i~V~D 230 (342)
T PLN02214 158 KNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVL-KYLTGSAKT-Y-----ANLTQAYVDVRD 230 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCccc-C-----CCCCcCeeEHHH
Confidence 678999999999999999888899999999999999976532 1222333 344554332 1 245789999999
Q ss_pred HHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCc-cccceecCCCCCCCCcccCChHHHHHHcCCCcCC
Q 043169 317 IVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVK-AKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT 395 (421)
Q Consensus 317 va~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~ 395 (421)
+|++++.+++.+ ..++.||+++ ..++++|+++.+.+.++.. .+....+ ..........+|++|++ +|||+|+
T Consensus 231 va~a~~~al~~~---~~~g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~~-~LG~~p~- 303 (342)
T PLN02214 231 VALAHVLVYEAP---SASGRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCKD-EKNPRAKPYKFTNQKIK-DLGLEFT- 303 (342)
T ss_pred HHHHHHHHHhCc---ccCCcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCcc-ccCCCCCccccCcHHHH-HcCCccc-
Confidence 999999999875 2346899987 5689999999999999742 1111111 11223444568999997 5999995
Q ss_pred CHHHHHHHHHHHHHHH
Q 043169 396 DLQTGLKKFVRWYLSY 411 (421)
Q Consensus 396 ~l~e~l~~~~~~~~~~ 411 (421)
+++|+|+++++||++.
T Consensus 304 ~lee~i~~~~~~~~~~ 319 (342)
T PLN02214 304 STKQSLYDTVKSLQEK 319 (342)
T ss_pred CHHHHHHHHHHHHHHc
Confidence 9999999999999875
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=316.25 Aligned_cols=291 Identities=21% Similarity=0.317 Sum_probs=234.4
Q ss_pred EEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEEcc
Q 043169 94 LVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLA 173 (421)
Q Consensus 94 lITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~~A 173 (421)
|||||+||||++|++.|+++|++|+++.+. ..+|++|.+++.++++..++|+|||+|
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~-----------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A 57 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH-----------------------KELDLTRQADVEAFFAKEKPTYVILAA 57 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc-----------------------ccCCCCCHHHHHHHHhccCCCEEEEee
Confidence 699999999999999999999998866431 148999999999999988899999999
Q ss_pred cccCc-hhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCC---CCCCCC-hHHHHHHH
Q 043169 174 AQAGV-RYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADR---TDQPAS-LYAATKKA 248 (421)
Q Consensus 174 g~~~~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~---~~~~~~-~Y~~sK~~ 248 (421)
+.... .....++...+++|+.++.+|+++|++.+++ ++|++||..+|+.....+++|++. +..|.+ .|+.||.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~ 136 (306)
T PLN02725 58 AKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIA 136 (306)
T ss_pred eeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHH
Confidence 97543 2234567788999999999999999999865 999999999999776778888762 223333 59999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CChHHHHHH----HHHcCCCeEEEecCCCCcceeecccHHHHHHH
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRP----DMAYFSFTR----NILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 320 (421)
+|.+++.+.+.++++++++||++||||+... ...++.++. ....+.++.+.. +++++.++|+|++|++++
T Consensus 137 ~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~g~~~~~~i~v~Dv~~~ 214 (306)
T PLN02725 137 GIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVW--GSGSPLREFLHVDDLADA 214 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEc--CCCCeeeccccHHHHHHH
Confidence 9999999988889999999999999997531 223444443 334566655521 567889999999999999
Q ss_pred HHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHH
Q 043169 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTG 400 (421)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~ 400 (421)
++.+++.. ...+.||++++.++++.|+++.+.+.++.+..+...+ ++........+|++|++ .|||+|+++++|+
T Consensus 215 ~~~~~~~~---~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~~-~lg~~p~~~~~~~ 289 (306)
T PLN02725 215 VVFLMRRY---SGAEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDT-SKPDGTPRKLMDSSKLR-SLGWDPKFSLKDG 289 (306)
T ss_pred HHHHHhcc---ccCcceEeCCCCcccHHHHHHHHHHHhCCCCceeecC-CCCCcccccccCHHHHH-HhCCCCCCCHHHH
Confidence 99999864 2346789999999999999999999998765443322 23333445678999996 6999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 043169 401 LKKFVRWYLSYYGYN 415 (421)
Q Consensus 401 l~~~~~~~~~~~~~~ 415 (421)
|+++++|++++.+.+
T Consensus 290 l~~~~~~~~~~~~~~ 304 (306)
T PLN02725 290 LQETYKWYLENYETG 304 (306)
T ss_pred HHHHHHHHHhhhhcc
Confidence 999999999998754
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=312.20 Aligned_cols=283 Identities=19% Similarity=0.198 Sum_probs=228.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++++++|+++| +|++++|.. ..+.+|++|.+.+.+++++.++|+||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~--------------------~~~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHS--------------------TDYCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEecccc--------------------ccccCCCCCHHHHHHHHHhcCCCEEE
Confidence 579999999999999999999999 799888732 12468999999999999987889999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+|+...+..++.+++..+.+|+.|+.+|+++|++.+. ++|++||..||+.....|++|++++ .|.+.|+.||+++|
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~Ss~~Vy~~~~~~p~~E~~~~-~P~~~Yg~sK~~~E 136 (299)
T PRK09987 60 NAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYSTDYVFPGTGDIPWQETDAT-APLNVYGETKLAGE 136 (299)
T ss_pred ECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEccceEECCCCCCCcCCCCCC-CCCCHHHHHHHHHH
Confidence 99999877666677788889999999999999999984 8999999999987766788888765 68899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCC
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
.+++.+. .+.+++||+++|||+.. .++..+++.+..++++.++.+ .-+...+.+.+++|+++++..++...
T Consensus 137 ~~~~~~~----~~~~ilR~~~vyGp~~~--~~~~~~~~~~~~~~~~~v~~d-~~g~~~~~~~~~d~~~~~~~~~~~~~-- 207 (299)
T PRK09987 137 KALQEHC----AKHLIFRTSWVYAGKGN--NFAKTMLRLAKEREELSVIND-QFGAPTGAELLADCTAHAIRVALNKP-- 207 (299)
T ss_pred HHHHHhC----CCEEEEecceecCCCCC--CHHHHHHHHHhcCCCeEEeCC-CcCCCCCHHHHHHHHHHHHHHhhccC--
Confidence 9998754 45799999999999653 456778887888888888731 11556666777888888888877643
Q ss_pred CCCceEEEecCCCccCHHHHHHHHHHHh---CCccc---cceecC----CCCCCCCcccCChHHHHHHcCCCcCCCHHHH
Q 043169 331 PAPYRIFNLGNTSPVTVPKLVNILERHL---KVKAK---KNVIEM----PGNGDVPFTHANISSAQKEFGYRPTTDLQTG 400 (421)
Q Consensus 331 ~~~~~~~~i~~~~~~t~~el~~~l~~~~---g~~~~---~~~~~~----~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~ 400 (421)
..+++||+++++++|+.|+++.+.+.. |.+.. +...+. .......+..+|++|+++.|||+|. +|+|+
T Consensus 208 -~~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~-~~~~~ 285 (299)
T PRK09987 208 -EVAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLP-DWQVG 285 (299)
T ss_pred -CCCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCc-cHHHH
Confidence 224699999999999999999997764 33321 111111 1233455678999999999999986 99999
Q ss_pred HHHHHHHH
Q 043169 401 LKKFVRWY 408 (421)
Q Consensus 401 l~~~~~~~ 408 (421)
|+++++.+
T Consensus 286 l~~~~~~~ 293 (299)
T PRK09987 286 VKRMLTEL 293 (299)
T ss_pred HHHHHHHH
Confidence 99999765
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=315.89 Aligned_cols=309 Identities=16% Similarity=0.242 Sum_probs=225.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.++|+||||||+||||++|+++|+++|++|++++|+.+...... .. .......+++++.+|++|.+++.++++++ |
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 82 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIA-HL-RALQELGDLKIFGADLTDEESFEAPIAGC--D 82 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HH-HhcCCCCceEEEEcCCCChHHHHHHHhcC--C
Confidence 56899999999999999999999999999999988654221110 00 01111136889999999999999999866 9
Q ss_pred EEEEcccccCchhhccCCc-hhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCC----CCCCCCCC--------C
Q 043169 168 HVMHLAAQAGVRYAMQNPH-SYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNE----NVPFSEAD--------R 234 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~-~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~----~~~~~e~~--------~ 234 (421)
+|||+|+... ....++. .++++|+.|+.++++++.+.+..++||++||.++|+... ..+++|+. .
T Consensus 83 ~vih~A~~~~--~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~ 160 (338)
T PLN00198 83 LVFHVATPVN--FASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTS 160 (338)
T ss_pred EEEEeCCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhh
Confidence 9999999642 1222333 467999999999999998764234999999999998432 23444432 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC--ChHHHHHHHHHcCCCeEEEecCC--CCcceee
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD--MAYFSFTRNILQGKPITVYRGKN--HVDLARD 310 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 310 (421)
..+|.++|+.||.++|.+++.+.+++|++++++||++||||+.... ..+ .++..+..++.+.+....+ ..+..++
T Consensus 161 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 239 (338)
T PLN00198 161 EKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSL-SLAMSLITGNEFLINGLKGMQMLSGSIS 239 (338)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcH-HHHHHHHcCCccccccccccccccCCcc
Confidence 2246788999999999999999988899999999999999975432 122 2334566666654432000 1123479
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCC-ccccceecCCCCCCCCcccCChHHHHHHc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKV-KAKKNVIEMPGNGDVPFTHANISSAQKEF 389 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~ka~~~l 389 (421)
|+||+|+|++++.+++.+. .++.|+ +++..+++.|+++.+.+.++. +.+......+ .......|.+|+++ +
T Consensus 240 ~i~V~D~a~a~~~~~~~~~---~~~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~-~ 311 (338)
T PLN00198 240 ITHVEDVCRAHIFLAEKES---ASGRYI-CCAANTSVPELAKFLIKRYPQYQVPTDFGDFP---SKAKLIISSEKLIS-E 311 (338)
T ss_pred eeEHHHHHHHHHHHhhCcC---cCCcEE-EecCCCCHHHHHHHHHHHCCCCCCCccccccC---CCCccccChHHHHh-C
Confidence 9999999999999988752 234674 556779999999999998864 2222221111 22345689999977 6
Q ss_pred CCCcCCCHHHHHHHHHHHHHHH
Q 043169 390 GYRPTTDLQTGLKKFVRWYLSY 411 (421)
Q Consensus 390 G~~p~~~l~e~l~~~~~~~~~~ 411 (421)
||+|+++++|+|+++++||+++
T Consensus 312 G~~p~~~l~~gi~~~~~~~~~~ 333 (338)
T PLN00198 312 GFSFEYGIEEIYDQTVEYFKAK 333 (338)
T ss_pred CceecCcHHHHHHHHHHHHHHc
Confidence 9999999999999999999864
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=309.77 Aligned_cols=291 Identities=21% Similarity=0.318 Sum_probs=219.1
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHH----HHhhc---cC
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLA----KLFDA---VA 165 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~----~~~~~---~~ 165 (421)
||||||+||||++|+++|+++|++|+++.|+.+.... . ..+.++|+.|..+.. ++++. .+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~---~----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 68 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK---F----------VNLVDLDIADYMDKEDFLAQIMAGDDFGD 68 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH---H----------HhhhhhhhhhhhhHHHHHHHHhcccccCC
Confidence 7999999999999999999999987777664332110 0 012234665543333 33321 15
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+|+|||+||..... ..++...+++|+.++.+|+++|++.+. ++|++||.++||.....+.+|+.+ ..|.+.|+.|
T Consensus 69 ~d~Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~vyg~~~~~~~~E~~~-~~p~~~Y~~s 143 (308)
T PRK11150 69 IEAIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTDDFIEEREY-EKPLNVYGYS 143 (308)
T ss_pred ccEEEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchHHhCcCCCCCCccCCC-CCCCCHHHHH
Confidence 79999999864432 234456799999999999999999884 799999999999765445555544 3677899999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC----hHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDM----AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
|.++|.+++.+.+.++++++++||++||||+..... ....+.+.+.+++...++. ++++..++|+|++|+|+++
T Consensus 144 K~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--g~~~~~r~~i~v~D~a~a~ 221 (308)
T PRK11150 144 KFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFE--GSENFKRDFVYVGDVAAVN 221 (308)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEec--CCCceeeeeeeHHHHHHHH
Confidence 999999999998878999999999999999865432 2334556777777665553 4667899999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCC---CCCcccCChHHHHHHcCCCcC-CCH
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNG---DVPFTHANISSAQKEFGYRPT-TDL 397 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~---~~~~~~~d~~ka~~~lG~~p~-~~l 397 (421)
+.+++.. .+++||+++++++++.|+++.+.+.++.. .....+.|... .......|++|+++ +||+|+ .++
T Consensus 222 ~~~~~~~----~~~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~-~g~~p~~~~~ 295 (308)
T PRK11150 222 LWFWENG----VSGIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDKLKGRYQAFTQADLTKLRA-AGYDKPFKTV 295 (308)
T ss_pred HHHHhcC----CCCeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccccccccceecccCHHHHHh-cCCCCCCCCH
Confidence 9998754 24699999999999999999999999853 22233333211 12334689999975 899987 499
Q ss_pred HHHHHHHHHHHH
Q 043169 398 QTGLKKFVRWYL 409 (421)
Q Consensus 398 ~e~l~~~~~~~~ 409 (421)
+|+|+++++|+.
T Consensus 296 ~~gl~~~~~~~~ 307 (308)
T PRK11150 296 AEGVAEYMAWLN 307 (308)
T ss_pred HHHHHHHHHHhh
Confidence 999999999975
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=312.91 Aligned_cols=315 Identities=17% Similarity=0.220 Sum_probs=225.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.++|+||||||+||||++++++|+++|++|++++|+.+... ..........++.++.+|++|.+.+.++++++ |
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d 81 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSL----HLLSKWKEGDRLRLFRADLQEEGSFDEAVKGC--D 81 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHH----HHHHhhccCCeEEEEECCCCCHHHHHHHHcCC--C
Confidence 57899999999999999999999999999999988543211 11111112356889999999999999998865 9
Q ss_pred EEEEcccccCchh--hccCCch-----hhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC-----CCCCCCCCC
Q 043169 168 HVMHLAAQAGVRY--AMQNPHS-----YVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN-----VPFSEADRT 235 (421)
Q Consensus 168 ~vi~~Ag~~~~~~--~~~~~~~-----~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~-----~~~~e~~~~ 235 (421)
+|||+||...... ...++.. .+++|+.|+.+|+++|++.+..++||++||.++||.... .+++|+...
T Consensus 82 ~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~ 161 (353)
T PLN02896 82 GVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQT 161 (353)
T ss_pred EEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCC
Confidence 9999999865432 2234443 345567999999999988753349999999999984321 345554211
Q ss_pred --------CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHH---cCCCeE--EEecC
Q 043169 236 --------DQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNIL---QGKPIT--VYRGK 302 (421)
Q Consensus 236 --------~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~ 302 (421)
.++.++|+.||.++|.++..+.+.+|++++++||++||||+.... ++.++..+. .++... ...+.
T Consensus 162 p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (353)
T PLN02896 162 PIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPS--VPSSIQVLLSPITGDSKLFSILSAV 239 (353)
T ss_pred cHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCC--CCchHHHHHHHhcCCcccccccccc
Confidence 124458999999999999999988899999999999999976532 122222222 343221 11100
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCc-cccceecCCCCCCCCcccCC
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVK-AKKNVIEMPGNGDVPFTHAN 381 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~d 381 (421)
......++|+|++|+|++++.+++.+ . .++.|++ ++.++++.|+++.+.+.++.. ......+ +...+.+ ...|
T Consensus 240 ~~~~~~~dfi~v~Dva~a~~~~l~~~--~-~~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~-~~~~~~~-~~~~ 313 (353)
T PLN02896 240 NSRMGSIALVHIEDICDAHIFLMEQT--K-AEGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDE-EKRGSIP-SEIS 313 (353)
T ss_pred ccccCceeEEeHHHHHHHHHHHHhCC--C-cCccEEe-cCCCCCHHHHHHHHHHhCCCCCccccccc-cccCccc-cccC
Confidence 11123569999999999999999865 2 2356865 567899999999999999743 2211112 2222333 3568
Q ss_pred hHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhCCCCC
Q 043169 382 ISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRG 417 (421)
Q Consensus 382 ~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~~ 417 (421)
+++++ +|||+|+++++++|+++++||+++..-+..
T Consensus 314 ~~~~~-~lGw~p~~~l~~~i~~~~~~~~~~~~~~~~ 348 (353)
T PLN02896 314 SKKLR-DLGFEYKYGIEEIIDQTIDCCVDHGFLPQN 348 (353)
T ss_pred HHHHH-HcCCCccCCHHHHHHHHHHHHHHCCCCCcc
Confidence 88886 599999999999999999999998765433
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=314.07 Aligned_cols=308 Identities=17% Similarity=0.240 Sum_probs=222.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.+.|+||||||+||||++++++|+++|++|++++|+.+....... .........++.++.+|++|.+.+.++++++ |
T Consensus 3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~--d 79 (351)
T PLN02650 3 SQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKH-LLDLPGATTRLTLWKADLAVEGSFDDAIRGC--T 79 (351)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHH-HHhccCCCCceEEEEecCCChhhHHHHHhCC--C
Confidence 467899999999999999999999999999999986543322111 1000011235889999999999999999876 9
Q ss_pred EEEEcccccCchhhccCC-chhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCC-CCCC-CCCCCC--------CC
Q 043169 168 HVMHLAAQAGVRYAMQNP-HSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLN-ENVP-FSEADR--------TD 236 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~-~~~~-~~e~~~--------~~ 236 (421)
+|||+|+.... ...++ ...+++|+.|+.+++++|++.+..++||++||.++|+.. ...+ ++|+.. +.
T Consensus 80 ~ViH~A~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 157 (351)
T PLN02650 80 GVFHVATPMDF--ESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKK 157 (351)
T ss_pred EEEEeCCCCCC--CCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccc
Confidence 99999987532 22233 468899999999999999987733499999999777543 2223 455432 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHH--HcCCCeEEEecCCCCcceeecccH
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNI--LQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
.+.++|+.||.++|.+++.+.+++|++++++||++||||+..... ...++..+ ..+.... + + ....++|+|+
T Consensus 158 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~~~~~~~~~-~---~-~~~~r~~v~V 231 (351)
T PLN02650 158 MTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSM-PPSLITALSLITGNEAH-Y---S-IIKQGQFVHL 231 (351)
T ss_pred cccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCC-CccHHHHHHHhcCCccc-c---C-cCCCcceeeH
Confidence 244689999999999999999889999999999999999765321 11222222 2233221 1 1 1234799999
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPT 394 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~ 394 (421)
+|+|++++.+++.+. .++.| ++++.++++.|+++.+.+.++........+ ....+......|++|+ ++|||+|+
T Consensus 232 ~Dva~a~~~~l~~~~---~~~~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~-~~lG~~p~ 305 (351)
T PLN02650 232 DDLCNAHIFLFEHPA---AEGRY-ICSSHDATIHDLAKMLREKYPEYNIPARFP-GIDEDLKSVEFSSKKL-TDLGFTFK 305 (351)
T ss_pred HHHHHHHHHHhcCcC---cCceE-EecCCCcCHHHHHHHHHHhCcccCCCCCCC-CcCcccccccCChHHH-HHhCCCCC
Confidence 999999999998752 23478 556677999999999999887321111111 1123444556788887 57999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 043169 395 TDLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 395 ~~l~e~l~~~~~~~~~~~ 412 (421)
++++|+|+++++||++..
T Consensus 306 ~~l~egl~~~i~~~~~~~ 323 (351)
T PLN02650 306 YSLEDMFDGAIETCREKG 323 (351)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 999999999999998754
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=309.46 Aligned_cols=303 Identities=18% Similarity=0.226 Sum_probs=225.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|+||||||+||||++++++|+++|++|++++|+....... ...........+++++++|++|++.+.++++++ |+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d~ 79 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKT-EHLLALDGAKERLHLFKANLLEEGSFDSVVDGC--EG 79 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhH-HHHHhccCCCCceEEEeccccCcchHHHHHcCC--CE
Confidence 468999999999999999999999999999999875432111 111100111247899999999999999999876 99
Q ss_pred EEEcccccCchhhccCCc-hhhhhhHHHHHHHHHHHHhc-CCCCeEEEEcccc--ccCCC---CCCCCCCCCCCCC----
Q 043169 169 VMHLAAQAGVRYAMQNPH-SYVHSNIAGLVTLLEACKSA-NPQPSIVWASSSS--VYGLN---ENVPFSEADRTDQ---- 237 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~-~~~~~N~~g~~~l~~~~~~~-~~~~riV~~SS~~--v~g~~---~~~~~~e~~~~~~---- 237 (421)
|||+|+.... ...++. ..+++|+.|+.+++++|++. +++ +||++||.+ +|+.. ...+++|+.+..+
T Consensus 80 Vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~ 156 (322)
T PLN02662 80 VFHTASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCE 156 (322)
T ss_pred EEEeCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhh
Confidence 9999997532 223443 78899999999999999887 654 999999976 46532 2234566543311
Q ss_pred -CCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 238 -PASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD-MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 238 -~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
..+.|+.+|.++|.+++.+.+++|++++++||+++|||+..+. .....++..+..+... + +++.++|+|++
T Consensus 157 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~i~v~ 229 (322)
T PLN02662 157 ESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQT--F-----PNASYRWVDVR 229 (322)
T ss_pred cccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCcc--C-----CCCCcCeEEHH
Confidence 1358999999999999999888899999999999999976543 2344455556665431 1 24578999999
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT 395 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~ 395 (421)
|+|++++.+++.+ .. ++.||++ +.+++++|+++.+.+.++... ......+.........+|++|++ .|||++ +
T Consensus 230 Dva~a~~~~~~~~--~~-~~~~~~~-g~~~s~~e~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~d~~k~~-~lg~~~-~ 302 (322)
T PLN02662 230 DVANAHIQAFEIP--SA-SGRYCLV-ERVVHYSEVVKILHELYPTLQ-LPEKCADDKPYVPTYQVSKEKAK-SLGIEF-I 302 (322)
T ss_pred HHHHHHHHHhcCc--Cc-CCcEEEe-CCCCCHHHHHHHHHHHCCCCC-CCCCCCCccccccccccChHHHH-HhCCcc-c
Confidence 9999999999875 22 3578887 477999999999999987421 11111111224455679999998 599997 4
Q ss_pred CHHHHHHHHHHHHHHH
Q 043169 396 DLQTGLKKFVRWYLSY 411 (421)
Q Consensus 396 ~l~e~l~~~~~~~~~~ 411 (421)
+++|+|+++++||+++
T Consensus 303 ~~~~~l~~~~~~~~~~ 318 (322)
T PLN02662 303 PLEVSLKDTVESLKEK 318 (322)
T ss_pred cHHHHHHHHHHHHHHc
Confidence 9999999999999864
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=307.00 Aligned_cols=302 Identities=16% Similarity=0.228 Sum_probs=225.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
..+|+||||||+||||++++++|+++|++|+++.|+.+..+... ..........+++++.+|++|.+++.++++++ |
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d 79 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTE-HLLALDGAKERLKLFKADLLEESSFEQAIEGC--D 79 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHH-HHHhccCCCCceEEEecCCCCcchHHHHHhCC--C
Confidence 35789999999999999999999999999999998665432211 11110111357899999999999999999876 9
Q ss_pred EEEEcccccCchhhccCC-chhhhhhHHHHHHHHHHHHhc-CCCCeEEEEcccccc--CCC---CCCCCCCCCCCC----
Q 043169 168 HVMHLAAQAGVRYAMQNP-HSYVHSNIAGLVTLLEACKSA-NPQPSIVWASSSSVY--GLN---ENVPFSEADRTD---- 236 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~-~~~~riV~~SS~~v~--g~~---~~~~~~e~~~~~---- 236 (421)
+|||+|+.... ...++ ...+++|+.|+.+++++|++. +++ |||++||.++| +.. ...+++|+++..
T Consensus 80 ~vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~-rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~ 156 (322)
T PLN02986 80 AVFHTASPVFF--TVKDPQTELIDPALKGTINVLNTCKETPSVK-RVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLC 156 (322)
T ss_pred EEEEeCCCcCC--CCCCchhhhhHHHHHHHHHHHHHHHhcCCcc-EEEEecchhheecCCccCCCCCCcCcccCCChHHh
Confidence 99999997432 22333 357899999999999999885 544 99999998754 332 123456655431
Q ss_pred -CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-ChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 237 -QPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD-MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 237 -~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
.+.+.|+.||.++|.+++++.+++|++++++||++||||...+. .....++..+..+++. + +.+.++|+|+
T Consensus 157 ~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~--~-----~~~~~~~v~v 229 (322)
T PLN02986 157 RETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL--F-----NNRFYRFVDV 229 (322)
T ss_pred hccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC--C-----CCcCcceeEH
Confidence 23578999999999999999988899999999999999976542 2233556666666642 2 2456899999
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcc--cCChHHHHHHcCCC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFT--HANISSAQKEFGYR 392 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~--~~d~~ka~~~lG~~ 392 (421)
+|+|++++.+++.+. . ++.||++ ++++++.|+++.+.+.++. ..+.. . ....+.... .+|.+|++ .|||+
T Consensus 230 ~Dva~a~~~al~~~~--~-~~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~-~-~~~~~~~~~~~~~d~~~~~-~lg~~ 301 (322)
T PLN02986 230 RDVALAHIKALETPS--A-NGRYIID-GPIMSVNDIIDILRELFPD-LCIAD-T-NEESEMNEMICKVCVEKVK-NLGVE 301 (322)
T ss_pred HHHHHHHHHHhcCcc--c-CCcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCC-C-CccccccccCCccCHHHHH-HcCCc
Confidence 999999999998762 2 3589995 5679999999999999984 11111 1 112222222 37888885 59999
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 043169 393 PTTDLQTGLKKFVRWYLSY 411 (421)
Q Consensus 393 p~~~l~e~l~~~~~~~~~~ 411 (421)
|+ +++|+|+++++||++.
T Consensus 302 ~~-~l~e~~~~~~~~~~~~ 319 (322)
T PLN02986 302 FT-PMKSSLRDTILSLKEK 319 (322)
T ss_pred cc-CHHHHHHHHHHHHHHc
Confidence 98 9999999999999873
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=302.35 Aligned_cols=305 Identities=33% Similarity=0.542 Sum_probs=246.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|.||||||+||||++|+++|+++|++|++++|......... .++.++.+|++|.+.+.++++... |+||
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~-d~vi 69 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL----------SGVEFVVLDLTDRDLVDELAKGVP-DAVI 69 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc----------cccceeeecccchHHHHHHHhcCC-CEEE
Confidence 34999999999999999999999999999999665332221 468899999999988888888766 9999
Q ss_pred EcccccCchhhcc-CCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCC-CCCCCCCCCCCCCCCChHHHHHHH
Q 043169 171 HLAAQAGVRYAMQ-NPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLN-ENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 171 ~~Ag~~~~~~~~~-~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~-~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
|+|+......... ++...+.+|+.|+.+++++|++.+++ +||+.||.++|+.. ...+++|+..+..|.++|+.||.+
T Consensus 70 h~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~-~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~~ 148 (314)
T COG0451 70 HLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVK-RFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLA 148 (314)
T ss_pred EccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCCCceECCCCCCCCcccccCCCCCCCHHHHHHHH
Confidence 9999876544333 35579999999999999999997765 99998888877754 333667762223555699999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCC---ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhh
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD---MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 325 (421)
+|..+..+.+.+|++++++||++||||+.... .....++..+.++.+..... +++...++++|++|++++++.++
T Consensus 149 ~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~v~D~a~~~~~~~ 226 (314)
T COG0451 149 AEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIG--GDGSQTRDFVYVDDVADALLLAL 226 (314)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEe--CCCceeEeeEeHHHHHHHHHHHH
Confidence 99999999988899999999999999987765 55666666777787733332 46788899999999999999999
Q ss_pred hcCCCCCCceEEEecCCC-ccCHHHHHHHHHHHhCCccc-cceecC-CCCCCCCcccCChHHHHHHcCCCcCCCHHHHHH
Q 043169 326 DTSAGPAPYRIFNLGNTS-PVTVPKLVNILERHLKVKAK-KNVIEM-PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLK 402 (421)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~-~~t~~el~~~l~~~~g~~~~-~~~~~~-~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~ 402 (421)
+++.. + +||++++. +++++|+++.+.+.+|.... ....+. ...........|.+|+++.|||.|++++++++.
T Consensus 227 ~~~~~---~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~ 302 (314)
T COG0451 227 ENPDG---G-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEGLA 302 (314)
T ss_pred hCCCC---c-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCCCCCCHHHHHH
Confidence 98732 2 99999997 89999999999999998765 333332 223334456789999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 043169 403 KFVRWYLSYYG 413 (421)
Q Consensus 403 ~~~~~~~~~~~ 413 (421)
++++|+.....
T Consensus 303 ~~~~~~~~~~~ 313 (314)
T COG0451 303 DTLEWLLKKLE 313 (314)
T ss_pred HHHHHHHHhhc
Confidence 99999987653
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=305.62 Aligned_cols=313 Identities=26% Similarity=0.394 Sum_probs=242.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMH 171 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~ 171 (421)
+||||||+|+||++++++|+++|++|++++|.......... ......++.++.+|++|.+++.++++..++|+|||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~ 76 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALK----RGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIH 76 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhh----hhccccceEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 48999999999999999999999999988764332111111 00011267889999999999999998777899999
Q ss_pred cccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 043169 172 LAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE 251 (421)
Q Consensus 172 ~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~ 251 (421)
|||.........++...+++|+.++.+++++|.+.+.+ +||++||..+|+.....+++|+++. .+.+.|+.+|.++|.
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~ss~~~~g~~~~~~~~e~~~~-~~~~~y~~sK~~~e~ 154 (328)
T TIGR01179 77 FAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSSSAAVYGEPSSIPISEDSPL-GPINPYGRSKLMSER 154 (328)
T ss_pred CccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEecchhhcCCCCCCCccccCCC-CCCCchHHHHHHHHH
Confidence 99986544344566778999999999999999988865 9999999999987666677777655 577899999999999
Q ss_pred HHHHHHHH-hCCcEEEEEeccccCCCCCC---------CChHHHHHHHHH-cCCCeEEEec---CCCCcceeecccHHHH
Q 043169 252 IAHTYNHI-YGLSITGLRFFTVYGPWGRP---------DMAYFSFTRNIL-QGKPITVYRG---KNHVDLARDFTYIDDI 317 (421)
Q Consensus 252 ~~~~~~~~-~gi~~~~vrp~~v~G~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~v~Dv 317 (421)
+++.++++ .+++++++||+.+|||.... ...+..+..... ....+.++.. .++++..++|+|++|+
T Consensus 155 ~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~ 234 (328)
T TIGR01179 155 ILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDL 234 (328)
T ss_pred HHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHH
Confidence 99999877 79999999999999985321 123344444433 2344444321 1356788999999999
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCC-
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTD- 396 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~- 396 (421)
|++++.++........+++||+++++++|++|+++.+.+.+|.+.++...+. ...+......|++++++.|||+|+++
T Consensus 235 a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~lg~~p~~~~ 313 (328)
T TIGR01179 235 ADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPR-RPGDPASLVADASKIRRELGWQPKYTD 313 (328)
T ss_pred HHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCC-CCccccchhcchHHHHHHhCCCCCcch
Confidence 9999999875322245789999999999999999999999998765544332 22333344578999999999999997
Q ss_pred HHHHHHHHHHHHHHH
Q 043169 397 LQTGLKKFVRWYLSY 411 (421)
Q Consensus 397 l~e~l~~~~~~~~~~ 411 (421)
++++|+++++|+++|
T Consensus 314 l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 314 LEIIIKTAWRWESRN 328 (328)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999875
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=302.33 Aligned_cols=298 Identities=27% Similarity=0.415 Sum_probs=233.6
Q ss_pred EEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc--cCCcEE
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA--VAFTHV 169 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~--~~~d~v 169 (421)
||||||+||||+++++.|.++|+ +|++++|..... . . ... ....+..|+.+.+.++.+.+. .++|+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~--~---~--~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~D~v 70 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH--K---F--LNL---ADLVIADYIDKEDFLDRLEKGAFGKIEAI 70 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch--h---h--hhh---hheeeeccCcchhHHHHHHhhccCCCCEE
Confidence 68999999999999999999997 788887644211 0 0 000 113567888888887776652 367999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||+|+.... ...++...+++|+.|+.+++++|++.+. ++|++||.++|+... .++.|++.+..|.+.|+.+|.++
T Consensus 71 vh~A~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~-~~~~e~~~~~~p~~~Y~~sK~~~ 145 (314)
T TIGR02197 71 FHQGACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYASSAATYGDGE-AGFREGRELERPLNVYGYSKFLF 145 (314)
T ss_pred EECccccCc--cccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEccHHhcCCCC-CCcccccCcCCCCCHHHHHHHHH
Confidence 999997532 3456778899999999999999998874 899999999998654 35667665545788999999999
Q ss_pred HHHHHHHHHH--hCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEec---CCCCcceeecccHHHHHHH
Q 043169 250 EEIAHTYNHI--YGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRG---KNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 250 e~~~~~~~~~--~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~v~Dva~a 320 (421)
|.+++++..+ .+++++++||++||||+.... ..+..++..+..++.+.++.. .+++++.++|+|++|++++
T Consensus 146 e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~ 225 (314)
T TIGR02197 146 DQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDV 225 (314)
T ss_pred HHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHH
Confidence 9999885432 368999999999999975432 345567778888887776531 1357888999999999999
Q ss_pred HHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCC---CCCcccCChHHHHHHcCCCcCCCH
Q 043169 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNG---DVPFTHANISSAQKEFGYRPTTDL 397 (421)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~---~~~~~~~d~~ka~~~lG~~p~~~l 397 (421)
++.++... .+++||+++++++|++|+++.+.+.+|.+......+.|... .......|++|+++.|||+|++++
T Consensus 226 i~~~~~~~----~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~p~~~l 301 (314)
T TIGR02197 226 NLWLLENG----VSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAGYYGPFTTL 301 (314)
T ss_pred HHHHHhcc----cCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhcCCCCcccH
Confidence 99999762 35799999999999999999999999976554454444321 123456899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 043169 398 QTGLKKFVRWYL 409 (421)
Q Consensus 398 ~e~l~~~~~~~~ 409 (421)
+|+|+++++|+.
T Consensus 302 ~~~l~~~~~~~~ 313 (314)
T TIGR02197 302 EEGVKDYVQWLL 313 (314)
T ss_pred HHHHHHHHHHHh
Confidence 999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=285.35 Aligned_cols=305 Identities=20% Similarity=0.246 Sum_probs=231.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.+|+|+||||+||||++|++.|+++||.|++..|+.+..+.. .....-.....+...+.+|+.|++++.++++++ |.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~-~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc--dg 81 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKT-EHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC--DG 81 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhH-HHHHhcccCcccceEEeccccccchHHHHHhCC--CE
Confidence 678999999999999999999999999999999988753221 122222234456999999999999999999999 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCC-----CCCCCCCCCCCCCC-----C
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGL-----NENVPFSEADRTDQ-----P 238 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~-----~~~~~~~e~~~~~~-----~ 238 (421)
|+|.|.+....... ...+.++.++.||.|++++|++....+|||++||.+.... .....++|+.+.+. .
T Consensus 82 VfH~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~ 160 (327)
T KOG1502|consen 82 VFHTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCK 160 (327)
T ss_pred EEEeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhh
Confidence 99999987654222 2337999999999999999999984459999999765432 22345666654321 2
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-hHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDM-AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 317 (421)
...|+.||..+|..+.+++++.|+..+.+.|+.|+||...+.. .-...+..+++|..-.. ......|+||+|+
T Consensus 161 ~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~------~n~~~~~VdVrDV 234 (327)
T KOG1502|consen 161 KLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETY------PNFWLAFVDVRDV 234 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccC------CCCceeeEeHHHH
Confidence 2679999999999999999999999999999999999876532 22345556666653222 2334459999999
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCC----CCcccCChHHHHHHcCCCc
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGD----VPFTHANISSAQKEFGYRP 393 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~----~~~~~~d~~ka~~~lG~~p 393 (421)
|.|++.+++.+ ...+.|.+.+. ..++.|+++++.+.++.-. +|...... ......+++|++...|++.
T Consensus 235 A~AHv~a~E~~---~a~GRyic~~~-~~~~~ei~~~l~~~~P~~~----ip~~~~~~~~~~~~~~~~~~~k~k~lg~~~~ 306 (327)
T KOG1502|consen 235 ALAHVLALEKP---SAKGRYICVGE-VVSIKEIADILRELFPDYP----IPKKNAEEHEGFLTSFKVSSEKLKSLGGFKF 306 (327)
T ss_pred HHHHHHHHcCc---ccCceEEEecC-cccHHHHHHHHHHhCCCCC----CCCCCCccccccccccccccHHHHhccccee
Confidence 99999999988 33477877764 4679999999999998643 22221111 1223478889876555776
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 043169 394 TTDLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 394 ~~~l~e~l~~~~~~~~~~~ 412 (421)
. +++|++.++++++++..
T Consensus 307 ~-~l~e~~~dt~~sl~~~~ 324 (327)
T KOG1502|consen 307 R-PLEETLSDTVESLREKG 324 (327)
T ss_pred c-ChHHHHHHHHHHHHHhc
Confidence 6 99999999999998753
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=291.20 Aligned_cols=276 Identities=21% Similarity=0.263 Sum_probs=225.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMH 171 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~ 171 (421)
+||||||+|+||++++++|+++|++|++++|+ .+|+.|.+++.+++++.++|+|||
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~------------------------~~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS------------------------QLDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc------------------------ccCCCCHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999999999999872 479999999999999988999999
Q ss_pred cccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 043169 172 LAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE 251 (421)
Q Consensus 172 ~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~ 251 (421)
+||.........++...+++|+.++.++++++++.+. ++|++||.++|+.....+++|++++ .+.+.|+.+|.++|.
T Consensus 57 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~Ss~~vy~~~~~~~~~E~~~~-~~~~~Y~~~K~~~E~ 133 (287)
T TIGR01214 57 TAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHISTDYVFDGEGKRPYREDDAT-NPLNVYGQSKLAGEQ 133 (287)
T ss_pred CCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeeeeecCCCCCCCCCCCCC-CCcchhhHHHHHHHH
Confidence 9997654333445667889999999999999998873 8999999999987667788887765 577899999999999
Q ss_pred HHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCC
Q 043169 252 IAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGP 331 (421)
Q Consensus 252 ~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~ 331 (421)
+++.+ +.+++++||++||||+.. ...+..++..+..+.++.+. ++..++++|++|+|++++.++..+ .
T Consensus 134 ~~~~~----~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~v~Dva~a~~~~~~~~--~ 201 (287)
T TIGR01214 134 AIRAA----GPNALIVRTSWLYGGGGG-RNFVRTMLRLAGRGEELRVV-----DDQIGSPTYAKDLARVIAALLQRL--A 201 (287)
T ss_pred HHHHh----CCCeEEEEeeecccCCCC-CCHHHHHHHHhhcCCCceEe-----cCCCcCCcCHHHHHHHHHHHHhhc--c
Confidence 98874 789999999999999743 33455677777777776664 235789999999999999999865 2
Q ss_pred CCceEEEecCCCccCHHHHHHHHHHHhCCccccce------ec---CCC-CCCCCcccCChHHHHHHcCCCcCCCHHHHH
Q 043169 332 APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNV------IE---MPG-NGDVPFTHANISSAQKEFGYRPTTDLQTGL 401 (421)
Q Consensus 332 ~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~------~~---~~~-~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l 401 (421)
..+++||+++++.+++.|+++.+.+.+|.+..... .. .+. ........+|++|+++.|||. .++++++|
T Consensus 202 ~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~~-~~~~~~~l 280 (287)
T TIGR01214 202 RARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGTP-LPHWREAL 280 (287)
T ss_pred CCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCCC-CccHHHHH
Confidence 45789999999999999999999999997643110 00 011 112244579999999999995 45999999
Q ss_pred HHHHHH
Q 043169 402 KKFVRW 407 (421)
Q Consensus 402 ~~~~~~ 407 (421)
.++++.
T Consensus 281 ~~~~~~ 286 (287)
T TIGR01214 281 RAYLQE 286 (287)
T ss_pred HHHHhh
Confidence 998763
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=293.96 Aligned_cols=279 Identities=26% Similarity=0.420 Sum_probs=215.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+|+||++|++.|.++|++|+.+.|. ..|++|.+++.++++..+||+||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~------------------------~~dl~d~~~~~~~~~~~~pd~Vi 56 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS------------------------DLDLTDPEAVAKLLEAFKPDVVI 56 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT------------------------CS-TTSHHHHHHHHHHH--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch------------------------hcCCCCHHHHHHHHHHhCCCeEe
Confidence 789999999999999999999999999999872 57999999999999999999999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+||...++.++.+++..+.+|+.++.+|.++|.+.+. ++||+||..||+.....++.|++.+ .|.+.||.+|+++|
T Consensus 57 n~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~--~li~~STd~VFdG~~~~~y~E~d~~-~P~~~YG~~K~~~E 133 (286)
T PF04321_consen 57 NCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA--RLIHISTDYVFDGDKGGPYTEDDPP-NPLNVYGRSKLEGE 133 (286)
T ss_dssp E------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS-SSTSSSB-TTS-----SSHHHHHHHHHH
T ss_pred ccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC--cEEEeeccEEEcCCcccccccCCCC-CCCCHHHHHHHHHH
Confidence 99999988889999999999999999999999999986 9999999999988888889999887 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC-
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA- 329 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~- 329 (421)
..+++.. -+..|+|++.+||+ ....++..++..+.+++.+.++ .++.++.+|++|+|+++..++++..
T Consensus 134 ~~v~~~~----~~~~IlR~~~~~g~--~~~~~~~~~~~~~~~~~~i~~~-----~d~~~~p~~~~dlA~~i~~l~~~~~~ 202 (286)
T PF04321_consen 134 QAVRAAC----PNALILRTSWVYGP--SGRNFLRWLLRRLRQGEPIKLF-----DDQYRSPTYVDDLARVILELIEKNLS 202 (286)
T ss_dssp HHHHHH-----SSEEEEEE-SEESS--SSSSHHHHHHHHHHCTSEEEEE-----SSCEE--EEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc----CCEEEEecceeccc--CCCchhhhHHHHHhcCCeeEee-----CCceeCCEEHHHHHHHHHHHHHhccc
Confidence 9998843 37899999999998 3345778888889999999886 3678999999999999999998751
Q ss_pred CCCCceEEEecCCCccCHHHHHHHHHHHhCCcc-ccceecCCC----CCCCCcccCChHHHHHHcCCCcCCCHHHHHHHH
Q 043169 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKA-KKNVIEMPG----NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKF 404 (421)
Q Consensus 330 ~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~-~~~~~~~~~----~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~ 404 (421)
+....++||+++++.+|+.|+++.+.+.+|.+. .+...+... .....+..+|++|+++.||+++. +|+++|+++
T Consensus 203 ~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~-~~~~~l~~~ 281 (286)
T PF04321_consen 203 GASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPP-PWREGLEEL 281 (286)
T ss_dssp -GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS----BHHHHHHHH
T ss_pred ccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCc-CHHHHHHHH
Confidence 123469999999999999999999999999876 222222211 11233567999999999999988 899999999
Q ss_pred HHHH
Q 043169 405 VRWY 408 (421)
Q Consensus 405 ~~~~ 408 (421)
++.|
T Consensus 282 ~~~~ 285 (286)
T PF04321_consen 282 VKQY 285 (286)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9876
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=292.14 Aligned_cols=296 Identities=24% Similarity=0.314 Sum_probs=229.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+|+||||+|+||+++++.|+++|++|++++|+.+... .....+++++.+|++|.+++.++++.+ |+||
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~~D~~~~~~l~~~~~~~--d~vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRR---------NLEGLDVEIVEGDLRDPASLRKAVAGC--RALF 69 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccc---------ccccCCceEEEeeCCCHHHHHHHHhCC--CEEE
Confidence 57999999999999999999999999999999654321 112246889999999999999999876 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCC-CCCCCCCCCCCCCC--CCChHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGL-NENVPFSEADRTDQ--PASLYAATKK 247 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~-~~~~~~~e~~~~~~--~~~~Y~~sK~ 247 (421)
|+|+... ....+++..+++|+.++.++++++++.+++ +||++||..+|+. ....+++|+.+... ..+.|+.+|.
T Consensus 70 ~~a~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~ 146 (328)
T TIGR03466 70 HVAADYR--LWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKF 146 (328)
T ss_pred Eeceecc--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHH
Confidence 9998642 223456788999999999999999998865 9999999999985 34456777655421 2468999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhc
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 327 (421)
++|.+++++.+++|++++++||+++|||+.........++.....+... .+. +...+|+|++|+|++++.+++.
T Consensus 147 ~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~i~v~D~a~a~~~~~~~ 220 (328)
T TIGR03466 147 LAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMP-AYV-----DTGLNLVHVDDVAEGHLLALER 220 (328)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCc-eee-----CCCcceEEHHHHHHHHHHHHhC
Confidence 9999999998888999999999999999765333333344444444322 221 2235899999999999999987
Q ss_pred CCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCC---------------CCCCC-----------CcccCC
Q 043169 328 SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP---------------GNGDV-----------PFTHAN 381 (421)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~---------------~~~~~-----------~~~~~d 381 (421)
+ ..+..|+++ ++++++.|+++.+.+.+|.+......|.+ ..... ....+|
T Consensus 221 ~---~~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 296 (328)
T TIGR03466 221 G---RIGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFS 296 (328)
T ss_pred C---CCCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCC
Confidence 5 346788886 57899999999999999976543322210 00000 234689
Q ss_pred hHHHHHHcCCCcCCCHHHHHHHHHHHHHHH
Q 043169 382 ISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411 (421)
Q Consensus 382 ~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~ 411 (421)
++|+++.|||+|+ +++|+|.++++||+++
T Consensus 297 ~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 297 SAKAVRELGYRQR-PAREALRDAVEWFRAN 325 (328)
T ss_pred hHHHHHHcCCCCc-CHHHHHHHHHHHHHHh
Confidence 9999999999996 9999999999999875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=268.25 Aligned_cols=317 Identities=22% Similarity=0.306 Sum_probs=269.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHH-HHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKA-RKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+|++||||-||+-|++|++.|+++|++|+++.|+.+..+...-.. ........+++++.+|++|...+.++++.++||-
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdE 81 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDE 81 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchh
Confidence 588999999999999999999999999999999877666553211 2222344669999999999999999999999999
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
|+|+|+.+.+..+.+.|+.+.+++-.|+.+|+++.+-.+. +-||...||+..||.....|.+|..+. .|.++|+++|+
T Consensus 82 IYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPF-yPrSPYAvAKl 160 (345)
T COG1089 82 IYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAKL 160 (345)
T ss_pred heeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCC-CCCCHHHHHHH
Confidence 9999999999989999999999999999999999998764 349999999999999999999998876 78999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHH---HHcCCCeEEEecCCCCcceeecccHHHHHHHHHHh
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRN---ILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGS 324 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 324 (421)
.+-.++..+++.+|+-.+.-..+|--+|..........+... +..|..-.++. |+-+..|||-|..|.+++++.+
T Consensus 161 Ya~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~l--GNldAkRDWG~A~DYVe~mwlm 238 (345)
T COG1089 161 YAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYL--GNLDAKRDWGHAKDYVEAMWLM 238 (345)
T ss_pred HHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEe--ccccccccccchHHHHHHHHHH
Confidence 999999999999999998888888888877766655555544 44566666655 6889999999999999999999
Q ss_pred hhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccc----------------eec----CCCCCCCCcccCChHH
Q 043169 325 LDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKN----------------VIE----MPGNGDVPFTHANISS 384 (421)
Q Consensus 325 l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~----------------~~~----~~~~~~~~~~~~d~~k 384 (421)
|+.+. ...|.|+.++..|++|++++..+..|.+..+. .+. .-++.+......|.+|
T Consensus 239 LQq~~----PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV~~Llgdp~K 314 (345)
T COG1089 239 LQQEE----PDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLLGDPTK 314 (345)
T ss_pred HccCC----CCceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchhhhhhcCCHHH
Confidence 99873 47799999999999999999999999765542 111 1145556666789999
Q ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHHHhC
Q 043169 385 AQKEFGYRPTTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 385 a~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 413 (421)
|++.|||+|+++++|.+++|+++..+...
T Consensus 315 A~~~LGW~~~~~~~elv~~Mv~~dl~~~~ 343 (345)
T COG1089 315 AKEKLGWRPEVSLEELVREMVEADLEAAR 343 (345)
T ss_pred HHHHcCCccccCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998877643
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=289.42 Aligned_cols=276 Identities=18% Similarity=0.217 Sum_probs=217.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
+++|+||||||+||||++++++|+++| ++|++++|+.... ... .......++.++.+|++|.+++.++++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~----~~~-~~~~~~~~~~~v~~Dl~d~~~l~~~~~~i- 75 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQ----WEM-QQKFPAPCLRFFIGDVRDKERLTRALRGV- 75 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHH----HHH-HHHhCCCcEEEEEccCCCHHHHHHHHhcC-
Confidence 468999999999999999999999986 7899998854321 111 11112357889999999999999999875
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
|+|||+||.........++...+++|+.|+.+++++|++.+.. +||++||...+ .|.++|+.|
T Consensus 76 -D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~SS~~~~---------------~p~~~Y~~s 138 (324)
T TIGR03589 76 -DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALSTDKAA---------------NPINLYGAT 138 (324)
T ss_pred -CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeCCCCC---------------CCCCHHHHH
Confidence 9999999986544445566789999999999999999998865 99999996431 356789999
Q ss_pred HHHHHHHHHHHHH---HhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCC-CeEEEecCCCCcceeecccHHHHHHHH
Q 043169 246 KKAGEEIAHTYNH---IYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGK-PITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 246 K~~~e~~~~~~~~---~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
|+++|.+++.++. .+|++++++|||+||||+. ..++.+...+..+. ++.++ ++++.++|+|++|+|+++
T Consensus 139 K~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~---~~i~~~~~~~~~~~~~~~i~----~~~~~r~~i~v~D~a~a~ 211 (324)
T TIGR03589 139 KLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG---SVVPFFKSLKEEGVTELPIT----DPRMTRFWITLEQGVNFV 211 (324)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEEeecceeCCCC---CcHHHHHHHHHhCCCCeeeC----CCCceEeeEEHHHHHHHH
Confidence 9999999987653 4689999999999999864 35667777666665 45653 567889999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCC-CcccCChHHHHHHcCCCcCCCHHHH
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDV-PFTHANISSAQKEFGYRPTTDLQTG 400 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~d~~ka~~~lG~~p~~~l~e~ 400 (421)
+.+++.. ..+++| ++++..+++.|+++.+.+..+. ...+ .+.++. ....+|.+++++.|||+|+++++++
T Consensus 212 ~~al~~~---~~~~~~-~~~~~~~sv~el~~~i~~~~~~----~~~~-~~~g~~~~~~~~~~~~~~~~lg~~~~~~l~~~ 282 (324)
T TIGR03589 212 LKSLERM---LGGEIF-VPKIPSMKITDLAEAMAPECPH----KIVG-IRPGEKLHEVMITEDDARHTYELGDYYAILPS 282 (324)
T ss_pred HHHHhhC---CCCCEE-ccCCCcEEHHHHHHHHHhhCCe----eEeC-CCCCchhHhhhcChhhhhhhcCCCCeEEEccc
Confidence 9999864 235778 4666679999999999986542 2223 234443 3356899999999999999999999
Q ss_pred HH
Q 043169 401 LK 402 (421)
Q Consensus 401 l~ 402 (421)
+.
T Consensus 283 ~~ 284 (324)
T TIGR03589 283 IS 284 (324)
T ss_pred cc
Confidence 86
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=268.53 Aligned_cols=274 Identities=24% Similarity=0.297 Sum_probs=237.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|++||||++|.+|.+|++.|. .+++|+.+++. + +|++|++.+.+++++.+||+||
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~-------------------~-----~Ditd~~~v~~~i~~~~PDvVI 55 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRA-------------------E-----LDITDPDAVLEVIRETRPDVVI 55 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCc-------------------c-----ccccChHHHHHHHHhhCCCEEE
Confidence 459999999999999999998 77999999871 1 7999999999999999999999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+|++...+.++.+++..+.+|..|+.++.++|.+.|. ++||+||..||....+.++.|+|.+ .|.+.||.||+++|
T Consensus 56 n~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga--~lVhiSTDyVFDG~~~~~Y~E~D~~-~P~nvYG~sKl~GE 132 (281)
T COG1091 56 NAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA--RLVHISTDYVFDGEKGGPYKETDTP-NPLNVYGRSKLAGE 132 (281)
T ss_pred ECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC--eEEEeecceEecCCCCCCCCCCCCC-CChhhhhHHHHHHH
Confidence 99999988888899999999999999999999999997 9999999999998888999999988 78999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCC
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
..++++ +-+..++|.+++||... .++...+++....++.+.+. .++..+.++..|+|+++..++...
T Consensus 133 ~~v~~~----~~~~~I~Rtswv~g~~g--~nFv~tml~la~~~~~l~vv-----~Dq~gsPt~~~dlA~~i~~ll~~~-- 199 (281)
T COG1091 133 EAVRAA----GPRHLILRTSWVYGEYG--NNFVKTMLRLAKEGKELKVV-----DDQYGSPTYTEDLADAILELLEKE-- 199 (281)
T ss_pred HHHHHh----CCCEEEEEeeeeecCCC--CCHHHHHHHHhhcCCceEEE-----CCeeeCCccHHHHHHHHHHHHhcc--
Confidence 999885 45679999999999755 55777888888899999886 478999999999999999999876
Q ss_pred CCCceEEEecCCCccCHHHHHHHHHHHhCCccccc-eec---CCCCCC-CCcccCChHHHHHHcCCCcCCCHHHHHHHHH
Q 043169 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKN-VIE---MPGNGD-VPFTHANISSAQKEFGYRPTTDLQTGLKKFV 405 (421)
Q Consensus 331 ~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~-~~~---~~~~~~-~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~ 405 (421)
..+++||+++...+||.|+++.+.+.++.+.... ... .|.+-. ..+..+|+.|+.+.+|+.|. +|++++++++
T Consensus 200 -~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~-~w~~~l~~~~ 277 (281)
T COG1091 200 -KEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP-EWREALKALL 277 (281)
T ss_pred -ccCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCc-cHHHHHHHHH
Confidence 3355999999888999999999999998654222 111 122222 23466999999999999888 8999999998
Q ss_pred HH
Q 043169 406 RW 407 (421)
Q Consensus 406 ~~ 407 (421)
+.
T Consensus 278 ~~ 279 (281)
T COG1091 278 DE 279 (281)
T ss_pred hh
Confidence 64
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=289.17 Aligned_cols=292 Identities=20% Similarity=0.231 Sum_probs=223.1
Q ss_pred CCCCEEEEE----cCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHH--HHHHhhcCCceEEEEcccCCHHHHHHHh
Q 043169 88 SGGMSVLVT----GAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKK--ARKALLNNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 88 ~~~k~vlIT----G~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
..+|+|||| ||+||||++|+++|+++|++|++++|+.......... .........+++++.+|+.| +.+++
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~~~ 126 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VKSKV 126 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HHhhh
Confidence 456789999 9999999999999999999999999976432111000 00111223468999999987 44555
Q ss_pred hccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCCh
Q 043169 162 DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASL 241 (421)
Q Consensus 162 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 241 (421)
....+|+|||+++. +..++.+++++|++.|++ +||++||.++|+.....+..|++.. .+.
T Consensus 127 ~~~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~p~~E~~~~-~p~-- 186 (378)
T PLN00016 127 AGAGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLK-QFLFCSSAGVYKKSDEPPHVEGDAV-KPK-- 186 (378)
T ss_pred ccCCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCC-EEEEEccHhhcCCCCCCCCCCCCcC-CCc--
Confidence 44467999999762 245688999999999976 9999999999997666666666543 232
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 242 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 242 Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
. +|..+|.++++ .+++++++||+++|||+... .....++..+..++++.++ +++++.++|+|++|+|+++
T Consensus 187 -~-sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~-~~~~~~~~~~~~~~~i~~~---g~g~~~~~~i~v~Dva~ai 256 (378)
T PLN00016 187 -A-GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNK-DCEEWFFDRLVRGRPVPIP---GSGIQLTQLGHVKDLASMF 256 (378)
T ss_pred -c-hHHHHHHHHHH----cCCCeEEEeceeEECCCCCC-chHHHHHHHHHcCCceeec---CCCCeeeceecHHHHHHHH
Confidence 2 89999987653 58999999999999997543 2445667778888887665 5678899999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCC---------CCCCCcccCChHHHHHHcCCC
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG---------NGDVPFTHANISSAQKEFGYR 392 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~---------~~~~~~~~~d~~ka~~~lG~~ 392 (421)
+.+++++ ...+++||+++++.+|+.|+++.+.+.+|.+..+...+... +........|++|++++|||+
T Consensus 257 ~~~l~~~--~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~~~LGw~ 334 (378)
T PLN00016 257 ALVVGNP--KAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAKEELGWT 334 (378)
T ss_pred HHHhcCc--cccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCHHHHHHhcCCC
Confidence 9999875 34579999999999999999999999999876433222111 011223457999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhCC
Q 043169 393 PTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 393 p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
|+++++|+|+++++||+++-..
T Consensus 335 p~~~l~egl~~~~~~~~~~~~~ 356 (378)
T PLN00016 335 PKFDLVEDLKDRYELYFGRGRD 356 (378)
T ss_pred CCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876543
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=289.73 Aligned_cols=294 Identities=15% Similarity=0.148 Sum_probs=217.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hh-----cCCceEEEEcccCCHHHHHHH
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LL-----NNHGVFVIEGDINDAKLLAKL 160 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~-----~~~~v~~~~~Dl~d~~~~~~~ 160 (421)
..++|+||||||+||||++++++|+++|++|+++.|+.+.. ...... .. ...++.++.+|++|.+++.++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~----~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 125 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDK----EKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEA 125 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHhhhccccccCCceEEEEcCCCCHHHHHHH
Confidence 46789999999999999999999999999999988754211 111110 00 013588999999999999999
Q ss_pred hhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhc-CCCCeEEEEccc--cccCCC--CC--CCCCCCC
Q 043169 161 FDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA-NPQPSIVWASSS--SVYGLN--EN--VPFSEAD 233 (421)
Q Consensus 161 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~-~~~~riV~~SS~--~v~g~~--~~--~~~~e~~ 233 (421)
++++ |.|||+|+...............++|+.++.+++++|++. +++ |||++||. .+|+.. .. ..++|+.
T Consensus 126 i~~~--d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E~~ 202 (367)
T PLN02686 126 FDGC--AGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDEES 202 (367)
T ss_pred HHhc--cEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCCCC
Confidence 9876 9999999976432211222456788999999999999986 555 99999996 477642 11 2355543
Q ss_pred C-----CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 234 R-----TDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 234 ~-----~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
. +..+.++|+.||.++|.+++.+.+.+|++++++||++||||+...... ..++ .++.+. ..++ +++ .
T Consensus 203 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~-~~~~-~~~~g~-~~~~---g~g--~ 274 (367)
T PLN02686 203 WSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNS-TATI-AYLKGA-QEML---ADG--L 274 (367)
T ss_pred CCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCC-hhHH-HHhcCC-CccC---CCC--C
Confidence 2 223567899999999999999988889999999999999997543221 1122 344553 3333 233 4
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHH
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKE 388 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~ 388 (421)
++|+||+|+|++++.+++.......+++| |+++++++++|+++.+.+.+|.+......+....++.....+|++|++++
T Consensus 275 ~~~v~V~Dva~A~~~al~~~~~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~d~~kl~~~ 353 (367)
T PLN02686 275 LATADVERLAEAHVCVYEAMGNKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFELSNKKLSRL 353 (367)
T ss_pred cCeEEHHHHHHHHHHHHhccCCCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccccHHHHHHH
Confidence 57999999999999999853112346678 78889999999999999999976554333322256777888999999999
Q ss_pred cCCCcCCC
Q 043169 389 FGYRPTTD 396 (421)
Q Consensus 389 lG~~p~~~ 396 (421)
|||+|+-.
T Consensus 354 l~~~~~~~ 361 (367)
T PLN02686 354 MSRTRRCC 361 (367)
T ss_pred HHHhhhcc
Confidence 99998743
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=279.46 Aligned_cols=256 Identities=25% Similarity=0.287 Sum_probs=199.4
Q ss_pred EEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEE
Q 043169 94 LVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMH 171 (421)
Q Consensus 94 lITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~ 171 (421)
|||||+||||++|+++|+++| ++|.++++....... ..........++++|++|.+++.++++++ |+|||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~------~~~~~~~~~~~~~~Di~d~~~l~~a~~g~--d~V~H 72 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL------KDLQKSGVKEYIQGDITDPESLEEALEGV--DVVFH 72 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc------hhhhcccceeEEEeccccHHHHHHHhcCC--ceEEE
Confidence 699999999999999999999 799999985542110 11111223349999999999999999998 99999
Q ss_pred cccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCC-CCCCC---CCCCCC-CCCCChHHHHH
Q 043169 172 LAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLN-ENVPF---SEADRT-DQPASLYAATK 246 (421)
Q Consensus 172 ~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~-~~~~~---~e~~~~-~~~~~~Y~~sK 246 (421)
+|++.... .....+.++++|+.||.+++++|++++++ |+||+||.++++.. ...++ +|+.+. ..+...|+.||
T Consensus 73 ~Aa~~~~~-~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk-rlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK 150 (280)
T PF01073_consen 73 TAAPVPPW-GDYPPEEYYKVNVDGTRNVLEAARKAGVK-RLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESK 150 (280)
T ss_pred eCcccccc-CcccHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHH
Confidence 99986532 23456779999999999999999999976 99999999988752 22333 333322 13567899999
Q ss_pred HHHHHHHHHHHH---Hh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 247 KAGEEIAHTYNH---IY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 247 ~~~e~~~~~~~~---~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
+.+|+++.+... +. .+.+++|||+.||||++.. ..+.+...+..+...... ++++...+++||+|+|.|+
T Consensus 151 ~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~--~~~~~~~~~~~g~~~~~~---g~~~~~~~~vyV~NvA~ah 225 (280)
T PF01073_consen 151 ALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQR--LVPRLVKMVRSGLFLFQI---GDGNNLFDFVYVENVAHAH 225 (280)
T ss_pred HHHHHHHHhhcccccccccceeEEEEeccEEeCccccc--ccchhhHHHHhcccceee---cCCCceECcEeHHHHHHHH
Confidence 999999999876 22 4999999999999997643 234455555556444443 5678899999999999999
Q ss_pred HHhhhcC-----CCCCCceEEEecCCCccC-HHHHHHHHHHHhCCcccc
Q 043169 322 LGSLDTS-----AGPAPYRIFNLGNTSPVT-VPKLVNILERHLKVKAKK 364 (421)
Q Consensus 322 ~~~l~~~-----~~~~~~~~~~i~~~~~~t-~~el~~~l~~~~g~~~~~ 364 (421)
+.+.+.- .....|+.|+|++++|+. +.|++..+.+.+|.+.+.
T Consensus 226 vlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 226 VLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred HHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 9876542 235689999999999999 999999999999987653
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=267.47 Aligned_cols=233 Identities=33% Similarity=0.525 Sum_probs=205.7
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEEc
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHL 172 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~~ 172 (421)
||||||+||||++++++|+++|++|+.+.|+....... . ...++.++.+|+.|.+.+.++++...+|+|||+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~----~----~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~ 72 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFE----E----KKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHL 72 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHH----H----HHTTEEEEESETTSHHHHHHHHHHHTESEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccc----c----ccceEEEEEeeccccccccccccccCceEEEEe
Confidence 79999999999999999999999999988865421111 1 112899999999999999999999999999999
Q ss_pred ccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 043169 173 AAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEI 252 (421)
Q Consensus 173 Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~ 252 (421)
|+.........+....++.|+.++.+++++|++.+. +++|++||..+|+.....+++|+.+. .+.++|+.+|...|.+
T Consensus 73 a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS~~~y~~~~~~~~~e~~~~-~~~~~Y~~~K~~~e~~ 150 (236)
T PF01370_consen 73 AAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSSASVYGDPDGEPIDEDSPI-NPLSPYGASKRAAEEL 150 (236)
T ss_dssp BSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGGTSSSSSSBETTSGC-CHSSHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc-cccccccccccccccc
Confidence 998653334467888999999999999999999998 49999999999998877888888877 7889999999999999
Q ss_pred HHHHHHHhCCcEEEEEeccccCCC---CCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 253 AHTYNHIYGLSITGLRFFTVYGPW---GRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 253 ~~~~~~~~gi~~~~vrp~~v~G~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
++.+.++++++++++||+++|||. ......++.++..+.+++++.++ +++++.++|+|++|+|++++.+++++.
T Consensus 151 ~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~D~a~~~~~~~~~~~ 227 (236)
T PF01370_consen 151 LRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIP---GDGSQVRDFIHVDDLAEAIVAALENPK 227 (236)
T ss_dssp HHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEE---STSSCEEEEEEHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccccccccccccccccccccccccchhhHHhhcCCccccc---CCCCCccceEEHHHHHHHHHHHHhCCC
Confidence 999999899999999999999998 55677889999999999998887 688999999999999999999999983
Q ss_pred CCCCceEEEec
Q 043169 330 GPAPYRIFNLG 340 (421)
Q Consensus 330 ~~~~~~~~~i~ 340 (421)
..+++|||+
T Consensus 228 --~~~~~yNig 236 (236)
T PF01370_consen 228 --AAGGIYNIG 236 (236)
T ss_dssp --TTTEEEEES
T ss_pred --CCCCEEEeC
Confidence 578999985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=271.11 Aligned_cols=317 Identities=20% Similarity=0.259 Sum_probs=246.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.++.+|+||||+||+|+|++++|.+++ .+|+++|.......-..+. . ......+.++++|+.|...+..++.++
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~--~-~~~~~~v~~~~~D~~~~~~i~~a~~~~- 77 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAEL--T-GFRSGRVTVILGDLLDANSISNAFQGA- 77 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhh--h-cccCCceeEEecchhhhhhhhhhccCc-
Confidence 367799999999999999999999998 7999998855311111000 0 013678999999999999999999875
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCC--CCCChHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTD--QPASLYA 243 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~--~~~~~Y~ 243 (421)
.|+|+|+...+.....+++..+++|+.||.+++++|++.+++ ++||+||..|+.........+++.+. ....+|+
T Consensus 78 --~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~-~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~ 154 (361)
T KOG1430|consen 78 --VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK-RLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYG 154 (361)
T ss_pred --eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC-EEEEecCceEEeCCeecccCCCCCCCccccccccc
Confidence 666666665555566678999999999999999999999986 99999999987654443333333332 2336899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHH
Q 043169 244 ATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLG 323 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 323 (421)
.||+.+|.++.+.+...++.++++||..||||++.. ..+.+...+..+...... ++++...+|+++++|+.|++.
T Consensus 155 ~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~--~~~~i~~~~~~g~~~f~~---g~~~~~~~~~~~~Nva~ahil 229 (361)
T KOG1430|consen 155 ESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKR--LLPKIVEALKNGGFLFKI---GDGENLNDFTYGENVAWAHIL 229 (361)
T ss_pred hHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCcc--ccHHHHHHHHccCceEEe---eccccccceEEechhHHHHHH
Confidence 999999999999886567999999999999997653 456777777778877665 567889999999999999987
Q ss_pred hhhc---CCCCCCceEEEecCCCccCHHHHHHHHHHHhCCcccc-ceecCC-------------------CCCCC-----
Q 043169 324 SLDT---SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKK-NVIEMP-------------------GNGDV----- 375 (421)
Q Consensus 324 ~l~~---~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~-~~~~~~-------------------~~~~~----- 375 (421)
+... .....+|++|+|+++.++...++...+.+.+|...+. ...|.. .+.-.
T Consensus 230 A~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~~v~ 309 (361)
T KOG1430|consen 230 AARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRFRVA 309 (361)
T ss_pred HHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChhhee
Confidence 5442 2346789999999999988888888999999987762 222210 11111
Q ss_pred ---CcccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhCCCC
Q 043169 376 ---PFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNR 416 (421)
Q Consensus 376 ---~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~ 416 (421)
....+++.||+++|||.|..+++|++.+++.|+........
T Consensus 310 ~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~~~ 353 (361)
T KOG1430|consen 310 LLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDSAQ 353 (361)
T ss_pred eeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhccc
Confidence 12358999999999999999999999999999988776543
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=244.24 Aligned_cols=295 Identities=19% Similarity=0.224 Sum_probs=244.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.|+||||||+|.+|++|.+.+..+|. +-.++.-+ -.+|+++.++.+++|+..+|.
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s-----------------------kd~DLt~~a~t~~lF~~ekPt 57 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS-----------------------KDADLTNLADTRALFESEKPT 57 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc-----------------------ccccccchHHHHHHHhccCCc
Confidence 37899999999999999999999986 22222110 147999999999999999999
Q ss_pred EEEEcccccCchh-hccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCC----CCCCCCChH
Q 043169 168 HVMHLAAQAGVRY-AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEAD----RTDQPASLY 242 (421)
Q Consensus 168 ~vi~~Ag~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~----~~~~~~~~Y 242 (421)
+|||.|+..+.-. ....+.+.++.|+.-..|++..|.+.|++ ++|++-|.++|......|++|.. ++.+....|
T Consensus 58 hVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~-K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gY 136 (315)
T KOG1431|consen 58 HVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVK-KVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGY 136 (315)
T ss_pred eeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchh-hhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHH
Confidence 9999999876543 34556789999999999999999999986 89999999999999999999865 444556779
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CChHHHHHHHHH----cCC-CeEEEecCCCCcceeeccc
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP----DMAYFSFTRNIL----QGK-PITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~i~ 313 (421)
+.+|.++.-..+.|++++|-..+.+-|.++|||.++. ...++.++..+- .|. .+.+| |+|...|.|+|
T Consensus 137 syAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~Vw---GsG~PlRqFiy 213 (315)
T KOG1431|consen 137 SYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVW---GSGSPLRQFIY 213 (315)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEe---cCCChHHHHhh
Confidence 9999888888899999999999999999999998753 235566665443 233 67788 78999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCC--ccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCC
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTS--PVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGY 391 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~--~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~ 391 (421)
++|+|+++++++++.. ..+..+++.++ .+|++|+++.+.+..+.+.+..+.... +.......+|++|++ .|+|
T Consensus 214 s~DLA~l~i~vlr~Y~---~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK-~DGq~kKtasnsKL~-sl~p 288 (315)
T KOG1431|consen 214 SDDLADLFIWVLREYE---GVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTK-SDGQFKKTASNSKLR-SLLP 288 (315)
T ss_pred HhHHHHHHHHHHHhhc---CccceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccC-CCCCcccccchHHHH-HhCC
Confidence 9999999999999873 35667888887 799999999999999998876665543 445556679999995 5999
Q ss_pred CcCCC-HHHHHHHHHHHHHHHhCCCC
Q 043169 392 RPTTD-LQTGLKKFVRWYLSYYGYNR 416 (421)
Q Consensus 392 ~p~~~-l~e~l~~~~~~~~~~~~~~~ 416 (421)
.|+.+ ++++|.++++||.+++.++|
T Consensus 289 d~~ft~l~~ai~~t~~Wy~~Ny~qar 314 (315)
T KOG1431|consen 289 DFKFTPLEQAISETVQWYLDNYEQAR 314 (315)
T ss_pred CcccChHHHHHHHHHHHHHHhHHhhc
Confidence 99976 99999999999999998765
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=260.13 Aligned_cols=276 Identities=20% Similarity=0.226 Sum_probs=210.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+|+|||||||||++++++|+++|++|++++|+.+. .......+++++.+|++|++++.++++++ |+||
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~---------~~~l~~~~v~~v~~Dl~d~~~l~~al~g~--d~Vi 69 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRK---------ASFLKEWGAELVYGDLSLPETLPPSFKGV--TAII 69 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHH---------hhhHhhcCCEEEECCCCCHHHHHHHHCCC--CEEE
Confidence 589999999999999999999999999999995421 11112347899999999999999999987 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+++.. ..++....++|+.++.+++++|++.+++ |||++||.+... .+..+|..+|..+|
T Consensus 70 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~Ss~~~~~--------------~~~~~~~~~K~~~e 129 (317)
T CHL00194 70 DASTSR-----PSDLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFSILNAEQ--------------YPYIPLMKLKSDIE 129 (317)
T ss_pred ECCCCC-----CCCccchhhhhHHHHHHHHHHHHHcCCC-EEEEeccccccc--------------cCCChHHHHHHHHH
Confidence 998643 1345567889999999999999999976 999999964321 12356899999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCC
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
.++++ .|++++++||+.+|+.. +..+...+..+.++.+. ++...++|+|++|+|++++.+++.+
T Consensus 130 ~~l~~----~~l~~tilRp~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~~~~~~l~~~-- 193 (317)
T CHL00194 130 QKLKK----SGIPYTIFRLAGFFQGL------ISQYAIPILEKQPIWIT----NESTPISYIDTQDAAKFCLKSLSLP-- 193 (317)
T ss_pred HHHHH----cCCCeEEEeecHHhhhh------hhhhhhhhccCCceEec----CCCCccCccCHHHHHHHHHHHhcCc--
Confidence 87754 68999999999888631 11112223344554442 4567789999999999999999876
Q ss_pred CCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCC-------------C-C--CC---------CC-cccCChHH
Q 043169 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP-------------G-N--GD---------VP-FTHANISS 384 (421)
Q Consensus 331 ~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~-------------~-~--~~---------~~-~~~~d~~k 384 (421)
...+++||+++++.+|++|+++.+.+.+|.+..+...|.. . . .. .. ....+.++
T Consensus 194 ~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 273 (317)
T CHL00194 194 ETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSSMAE 273 (317)
T ss_pred cccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCCHHH
Confidence 3468999999999999999999999999987655444321 0 0 00 01 12246778
Q ss_pred HHHHcCCCcC--CCHHHHHHHHHHHHHHHhC
Q 043169 385 AQKEFGYRPT--TDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 385 a~~~lG~~p~--~~l~e~l~~~~~~~~~~~~ 413 (421)
+++.||+.|+ .++++.+++++....+..+
T Consensus 274 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 304 (317)
T CHL00194 274 LYKIFKIDPNELISLEDYFQEYFERILKRLK 304 (317)
T ss_pred HHHHhCCChhhhhhHHHHHHHHHHHHHHHHH
Confidence 8999999984 5899999999887777554
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=255.20 Aligned_cols=275 Identities=16% Similarity=0.219 Sum_probs=208.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
..|+||||||+||||++|+++|+++|++|+... .|+.|.+.+...++..++|+
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~---------------------------~~~~~~~~v~~~l~~~~~D~ 60 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS---------------------------GRLENRASLEADIDAVKPTH 60 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEec---------------------------CccCCHHHHHHHHHhcCCCE
Confidence 457899999999999999999999999987532 25667777888887778999
Q ss_pred EEEcccccCch---hhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCC------CCCCCCCCCCCCCC
Q 043169 169 VMHLAAQAGVR---YAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNE------NVPFSEADRTDQPA 239 (421)
Q Consensus 169 vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~------~~~~~e~~~~~~~~ 239 (421)
|||+||..+.. .+..++...+++|+.|+.+|+++|++.++ +++++||.++|+... ..++.|++.+.++.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv--~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~ 138 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGL--VLTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTG 138 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEecceEeCCCCCCCcccCCCCCcCCCCCCCC
Confidence 99999987532 34567888999999999999999999986 466777778886432 22477777765566
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHH
Q 043169 240 SLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK 319 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 319 (421)
+.|+.||+++|.++..+.+ ..++|++.++|++.. ....++..++.++.+... + .+|+|++|+++
T Consensus 139 s~Yg~sK~~~E~~~~~y~~-----~~~lr~~~~~~~~~~---~~~~fi~~~~~~~~~~~~---~-----~s~~yv~D~v~ 202 (298)
T PLN02778 139 SFYSKTKAMVEELLKNYEN-----VCTLRVRMPISSDLS---NPRNFITKITRYEKVVNI---P-----NSMTILDELLP 202 (298)
T ss_pred CchHHHHHHHHHHHHHhhc-----cEEeeecccCCcccc---cHHHHHHHHHcCCCeeEc---C-----CCCEEHHHHHH
Confidence 8999999999999998753 467888877776422 123577888888775443 1 27999999999
Q ss_pred HHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCC-----CCCCcccCChHHHHHHcCCCcC
Q 043169 320 GCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN-----GDVPFTHANISSAQKEFGYRPT 394 (421)
Q Consensus 320 a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~-----~~~~~~~~d~~ka~~~lG~~p~ 394 (421)
+++.+++.+ . +++||+++++++|+.|+++.+.+.++.+.++..+..+.. .......+|++|+++.++-.+.
T Consensus 203 al~~~l~~~---~-~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~~~~~ 278 (298)
T PLN02778 203 ISIEMAKRN---L-TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFPELLP 278 (298)
T ss_pred HHHHHHhCC---C-CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHHHHHhcccccc
Confidence 999998754 2 369999999999999999999999997533212211111 1111236999999999886555
Q ss_pred CCHHHHHHHHHHHHHHHhC
Q 043169 395 TDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 395 ~~l~e~l~~~~~~~~~~~~ 413 (421)
..+++++..++-++...+
T Consensus 279 -~~~~~~~~~~~~~~~~~~ 296 (298)
T PLN02778 279 -IKESLIKYVFEPNKKTKK 296 (298)
T ss_pred -hHHHHHHHHHHHHHhhhc
Confidence 678888888888755443
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=281.14 Aligned_cols=258 Identities=20% Similarity=0.252 Sum_probs=197.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+|+||||+||||++++++|+++|++|++++|+... . ...++.++.+|++|.+++.++++++ |+||
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~--------~----~~~~v~~v~gDL~D~~~l~~al~~v--D~VV 66 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPD--------S----WPSSADFIAADIRDATAVESAMTGA--DVVA 66 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchh--------h----cccCceEEEeeCCCHHHHHHHHhCC--CEEE
Confidence 579999999999999999999999999999985321 0 1136889999999999999999875 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+|+.... .+++|+.|+.+++++|++.+.+ +||++||.. |.++|
T Consensus 67 HlAa~~~~---------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~--------------------------K~aaE 110 (854)
T PRK05865 67 HCAWVRGR---------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH--------------------------QPRVE 110 (854)
T ss_pred ECCCcccc---------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH--------------------------HHHHH
Confidence 99986421 5689999999999999998865 999999852 88888
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCC
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
.++.+ +|++++++||+++|||+. ..++..+.. ..++. .++++..++|+|++|+|++++.+++..
T Consensus 111 ~ll~~----~gl~~vILRp~~VYGP~~------~~~i~~ll~---~~v~~-~G~~~~~~dfIhVdDVA~Ai~~aL~~~-- 174 (854)
T PRK05865 111 QMLAD----CGLEWVAVRCALIFGRNV------DNWVQRLFA---LPVLP-AGYADRVVQVVHSDDAQRLLVRALLDT-- 174 (854)
T ss_pred HHHHH----cCCCEEEEEeceEeCCCh------HHHHHHHhc---Cceec-cCCCCceEeeeeHHHHHHHHHHHHhCC--
Confidence 87743 699999999999999952 233333332 12221 145567789999999999999998754
Q ss_pred CCCceEEEecCCCccCHHHHHHHHHHHhC---CccccceecCCC-CCCCCcccCChHHHHHHcCCCcCCCHHHHHHHHHH
Q 043169 331 PAPYRIFNLGNTSPVTVPKLVNILERHLK---VKAKKNVIEMPG-NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVR 406 (421)
Q Consensus 331 ~~~~~~~~i~~~~~~t~~el~~~l~~~~g---~~~~~~~~~~~~-~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~ 406 (421)
...+++|||++++.+|++|+++.+.+... .+......+... ........+|++|+++.|||+|+++++|+|+++++
T Consensus 175 ~~~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~dti~ 254 (854)
T PRK05865 175 VIDSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAEECLEDFTL 254 (854)
T ss_pred CcCCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 23467999999999999999999887532 111100000000 01112346899999999999999999999999999
Q ss_pred HHHHHhCC
Q 043169 407 WYLSYYGY 414 (421)
Q Consensus 407 ~~~~~~~~ 414 (421)
||+.+..-
T Consensus 255 ~~r~ri~~ 262 (854)
T PRK05865 255 AVRGRIGL 262 (854)
T ss_pred HHHhhccc
Confidence 99986543
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=250.56 Aligned_cols=280 Identities=16% Similarity=0.122 Sum_probs=196.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.+|+||||||+||||++++++|+++|++|++++|+.+..+. ....... ....++.++.+|++|.+++.+++.++ |
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~--~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~--d 80 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEI--EKEIRGLSCEEERLKVFDVDPLDYHSILDALKGC--S 80 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhH--HHHHHhcccCCCceEEEEecCCCHHHHHHHHcCC--C
Confidence 46799999999999999999999999999999985432111 0111111 11246889999999999999999877 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccccc--CCC---CCCCCCCCCCCCC-----
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVY--GLN---ENVPFSEADRTDQ----- 237 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~--g~~---~~~~~~e~~~~~~----- 237 (421)
.|+|.++..... ..+.+.++++|+.|+.+++++|.+.+..+|||++||...+ +.. ...+++|+.+...
T Consensus 81 ~v~~~~~~~~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~ 158 (297)
T PLN02583 81 GLFCCFDPPSDY--PSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRK 158 (297)
T ss_pred EEEEeCccCCcc--cccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhh
Confidence 999987653211 1235678999999999999999886423499999998764 311 1235566543211
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHH
Q 043169 238 PASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 317 (421)
+...|+.||..+|.+++++.++.|+++++|||++||||+..... ..+.+.. ..+ +...++|+||+|+
T Consensus 159 ~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~-------~~~~~~~-~~~-----~~~~~~~v~V~Dv 225 (297)
T PLN02583 159 FKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN-------PYLKGAA-QMY-----ENGVLVTVDVNFL 225 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch-------hhhcCCc-ccC-----cccCcceEEHHHH
Confidence 12379999999999999998878999999999999999764321 1222221 121 1234679999999
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCC
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYR 392 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~ 392 (421)
|++++.+++.+ .. ++.|+++++....+.++++++.+.++.-....... ..........+++.|+ ++||++
T Consensus 226 a~a~~~al~~~--~~-~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~k~-~~l~~~ 295 (297)
T PLN02583 226 VDAHIRAFEDV--SS-YGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYE-MQGSEVYQQRIRNKKL-NKLMED 295 (297)
T ss_pred HHHHHHHhcCc--cc-CCcEEEecCCCccHHHHHHHHHHhCCCCCCCCccc-ccCCCccccccChHHH-HHhCcc
Confidence 99999999866 23 44788887665557889999999998531110000 0001223345788888 459976
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=250.51 Aligned_cols=246 Identities=23% Similarity=0.278 Sum_probs=216.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+||+||||||+|.||+++++++++.+ .++++++|++.+...-..+.... .+...+.++-+|+.|.+.+.+++++.+
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~-~~~~~~~~~igdVrD~~~~~~~~~~~k 325 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK-FPELKLRFYIGDVRDRDRVERAMEGHK 325 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh-CCCcceEEEecccccHHHHHHHHhcCC
Confidence 3789999999999999999999999998 47888888765443333322222 124788999999999999999999999
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+|+|+|.|+.-+.+..+.+|.+.+++|+.||.|++++|.+++++ ++|.+||.-. -+|.+.||+|
T Consensus 326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~-~~V~iSTDKA---------------V~PtNvmGaT 389 (588)
T COG1086 326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVK-KFVLISTDKA---------------VNPTNVMGAT 389 (588)
T ss_pred CceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCC-EEEEEecCcc---------------cCCchHhhHH
Confidence 99999999999999999999999999999999999999999987 9999999753 2678999999
Q ss_pred HHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL 322 (421)
Q Consensus 246 K~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 322 (421)
|+.+|..+..++++. +.+++++|.|||.|.+++ .++-|.+++.+|+++++. +++.+|-|+.+.|.++.++
T Consensus 390 Kr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGS---ViPlFk~QI~~GgplTvT----dp~mtRyfMTI~EAv~LVl 462 (588)
T COG1086 390 KRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGS---VIPLFKKQIAEGGPLTVT----DPDMTRFFMTIPEAVQLVL 462 (588)
T ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEecceecCCCC---CHHHHHHHHHcCCCcccc----CCCceeEEEEHHHHHHHHH
Confidence 999999999998753 389999999999997555 789999999999999994 7899999999999999999
Q ss_pred HhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhC
Q 043169 323 GSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLK 359 (421)
Q Consensus 323 ~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g 359 (421)
++.... ..|++|-+.-|+++.+.|+++.|-+++|
T Consensus 463 qA~a~~---~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 463 QAGAIA---KGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHHhhc---CCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 988765 4589999999999999999999999997
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=259.18 Aligned_cols=265 Identities=19% Similarity=0.238 Sum_probs=196.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC---CcEEEEeCCCCCCChhHHH---HHHH---------------hhcCCceEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG---DGVVGLDNFNNYYDPSLKK---ARKA---------------LLNNHGVFV 146 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~---~~~~---------------~~~~~~v~~ 146 (421)
.++|+|+|||||||||++|++.|++.+ .+|+++.|.....+...+. .... .....++.+
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 589999999999999999999999875 3689999976544332221 0000 001257899
Q ss_pred EEcccC-------CHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 147 IEGDIN-------DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 147 ~~~Dl~-------d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
+.+|++ +.+.++++++++ |+|||+|+.... ..+++...++|+.|+.+|+++|++.+..+++|++||.+
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~~v--D~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~ 163 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWKEI--DIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAY 163 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHhCC--CEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeE
Confidence 999998 455567777765 999999997653 24677889999999999999999863334999999999
Q ss_pred ccCCCCC----CCCCCCC--------------------------------------------C--CCCCCChHHHHHHHH
Q 043169 220 VYGLNEN----VPFSEAD--------------------------------------------R--TDQPASLYAATKKAG 249 (421)
Q Consensus 220 v~g~~~~----~~~~e~~--------------------------------------------~--~~~~~~~Y~~sK~~~ 249 (421)
+||...+ .++.+.. + ...+.+.|+.||+++
T Consensus 164 vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~a 243 (491)
T PLN02996 164 VCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMG 243 (491)
T ss_pred EecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHH
Confidence 9986431 1221100 0 011346799999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-------hHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHH
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDM-------AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL 322 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 322 (421)
|.++..++. |++++++||++||||+..+.. ....++..+.+|....++ +++++.+|++||+|+|++++
T Consensus 244 E~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~---gdg~~~~D~v~Vddvv~a~l 318 (491)
T PLN02996 244 EMLLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFL---ADPNSVLDVIPADMVVNAMI 318 (491)
T ss_pred HHHHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEe---cCCCeecceecccHHHHHHH
Confidence 999988754 899999999999999765421 123344445556655555 68899999999999999999
Q ss_pred HhhhcCC-CCCCceEEEecCC--CccCHHHHHHHHHHHhCCcc
Q 043169 323 GSLDTSA-GPAPYRIFNLGNT--SPVTVPKLVNILERHLKVKA 362 (421)
Q Consensus 323 ~~l~~~~-~~~~~~~~~i~~~--~~~t~~el~~~l~~~~g~~~ 362 (421)
.++.... ....+.+||++++ .++|+.|+++.+.+.++...
T Consensus 319 ~a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 319 VAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred HHHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 9987531 1124689999998 88999999999999887543
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=241.04 Aligned_cols=238 Identities=26% Similarity=0.368 Sum_probs=185.5
Q ss_pred EEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHh---hcCCceE----EEEcccCCHHHHHHHhhcc
Q 043169 93 VLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKAL---LNNHGVF----VIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~----~~~~Dl~d~~~~~~~~~~~ 164 (421)
||||||+|.||++|+++|++.+ .+++++++++... .....+. ....++. ++.+|++|.+.+.++++..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l----~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKL----YELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHH----HHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHH----HHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc
Confidence 7999999999999999999998 5799999965422 2222222 1233454 4589999999999999999
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHH
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAA 244 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~ 244 (421)
+||+|||.|+.-+++..+.+|...+++|+.||.|++++|.+++++ ++|++||.-.. +|.+.||+
T Consensus 77 ~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~-~~v~ISTDKAv---------------~PtnvmGa 140 (293)
T PF02719_consen 77 KPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVE-RFVFISTDKAV---------------NPTNVMGA 140 (293)
T ss_dssp T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-S-EEEEEEECGCS---------------S--SHHHH
T ss_pred CCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEccccccC---------------CCCcHHHH
Confidence 999999999999999999999999999999999999999999986 99999997642 57899999
Q ss_pred HHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 245 TKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
||+.+|.++..+++.. +.+++++|.|||.|..++ .++.|.+++.+|+|+++. +++.+|-|+.+++.++.+
T Consensus 141 tKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GS---Vip~F~~Qi~~g~PlTvT----~p~mtRffmti~EAv~Lv 213 (293)
T PF02719_consen 141 TKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGS---VIPLFKKQIKNGGPLTVT----DPDMTRFFMTIEEAVQLV 213 (293)
T ss_dssp HHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTS---CHHHHHHHHHTTSSEEEC----ETT-EEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCc---HHHHHHHHHHcCCcceeC----CCCcEEEEecHHHHHHHH
Confidence 9999999999988764 689999999999997554 789999999999999995 679999999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCC
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKV 360 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~ 360 (421)
+.++... ..|++|.+.-|+++++.|+++.+.+..|.
T Consensus 214 l~a~~~~---~~geifvl~mg~~v~I~dlA~~~i~~~g~ 249 (293)
T PF02719_consen 214 LQAAALA---KGGEIFVLDMGEPVKILDLAEAMIELSGL 249 (293)
T ss_dssp HHHHHH-----TTEEEEE---TCEECCCHHHHHHHHTT-
T ss_pred HHHHhhC---CCCcEEEecCCCCcCHHHHHHHHHhhccc
Confidence 9998876 35899999999999999999999999985
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=245.35 Aligned_cols=279 Identities=21% Similarity=0.189 Sum_probs=194.6
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEEc
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHL 172 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~~ 172 (421)
||||||+||||+++++.|+++|++|++++|+........ ...+ .|+.. +.+.+.+.+ +|+|||+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~----~~~~~-~~~~~~~~~--~D~Vvh~ 64 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK---------WEGY----KPWAP-LAESEALEG--ADAVINL 64 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc---------ceee----ecccc-cchhhhcCC--CCEEEEC
Confidence 689999999999999999999999999999765432211 0011 12222 334445554 4999999
Q ss_pred ccccCch--hhccCCchhhhhhHHHHHHHHHHHHhcCCC-CeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 173 AAQAGVR--YAMQNPHSYVHSNIAGLVTLLEACKSANPQ-PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 173 Ag~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||..... .........+++|+.++.+++++|++.+.+ .++|++||..+||.....+++|+.++ .+...|+..+...
T Consensus 65 a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~-~~~~~~~~~~~~~ 143 (292)
T TIGR01777 65 AGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSP-AGDDFLAELCRDW 143 (292)
T ss_pred CCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCC-CCCChHHHHHHHH
Confidence 9974321 122234567899999999999999998863 36777777788987666677777643 3455667777777
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
|.....+. +.+++++++||+++|||... ....+...+....... + ++++..++|+|++|+|+++..+++.+.
T Consensus 144 e~~~~~~~-~~~~~~~ilR~~~v~G~~~~---~~~~~~~~~~~~~~~~-~---g~~~~~~~~i~v~Dva~~i~~~l~~~~ 215 (292)
T TIGR01777 144 EEAAQAAE-DLGTRVVLLRTGIVLGPKGG---ALAKMLPPFRLGLGGP-L---GSGRQWFSWIHIEDLVQLILFALENAS 215 (292)
T ss_pred HHHhhhch-hcCCceEEEeeeeEECCCcc---hhHHHHHHHhcCcccc-c---CCCCcccccEeHHHHHHHHHHHhcCcc
Confidence 76665443 35899999999999999542 2333332222221111 2 567899999999999999999998652
Q ss_pred CCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCC--------CCC-CCCcccCChHHHHHHcCCCcCC-CHHH
Q 043169 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP--------GNG-DVPFTHANISSAQKEFGYRPTT-DLQT 399 (421)
Q Consensus 330 ~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~--------~~~-~~~~~~~d~~ka~~~lG~~p~~-~l~e 399 (421)
..++||+++++++++.|+++.+.+.+|.+.... .|.. .+. -......+++|++ ++||+|++ +++|
T Consensus 216 ---~~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 290 (292)
T TIGR01777 216 ---ISGPVNATAPEPVRNKEFAKALARALHRPAFFP-VPAFVLRALLGEMADLLLKGQRVLPEKLL-EAGFQFQYPDLDE 290 (292)
T ss_pred ---cCCceEecCCCccCHHHHHHHHHHHhCCCCcCc-CCHHHHHHHhchhhHHHhCCcccccHHHH-hcCCeeeCcChhh
Confidence 346899999999999999999999999754321 2210 000 0123346778886 59999999 5888
Q ss_pred HH
Q 043169 400 GL 401 (421)
Q Consensus 400 ~l 401 (421)
++
T Consensus 291 ~~ 292 (292)
T TIGR01777 291 AL 292 (292)
T ss_pred cC
Confidence 64
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=266.88 Aligned_cols=304 Identities=19% Similarity=0.197 Sum_probs=217.0
Q ss_pred CEEEEEcCCChhHHHHHHHHH--HCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH------HHHHHHhh
Q 043169 91 MSVLVTGAAGFVGTHVSLALK--KRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA------KLLAKLFD 162 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~------~~~~~~~~ 162 (421)
|+|||||||||||++|+++|+ ++|++|++++|+... ....... ......+++++.+|++|+ +.++++ +
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~--~~~~~~~-~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~ 76 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL--SRLEALA-AYWGADRVVPLVGDLTEPGLGLSEADIAEL-G 76 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH--HHHHHHH-HhcCCCcEEEEecccCCccCCcCHHHHHHh-c
Confidence 579999999999999999999 579999999994321 1111111 111225789999999984 455555 4
Q ss_pred ccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCC--CCCCC
Q 043169 163 AVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRT--DQPAS 240 (421)
Q Consensus 163 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~--~~~~~ 240 (421)
+ +|+|||+||..... .+.....++|+.|+.+++++|++.+.+ +||++||..+||.... +++|++.. ..+.+
T Consensus 77 ~--~D~Vih~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~~SS~~v~g~~~~-~~~e~~~~~~~~~~~ 149 (657)
T PRK07201 77 D--IDHVVHLAAIYDLT---ADEEAQRAANVDGTRNVVELAERLQAA-TFHHVSSIAVAGDYEG-VFREDDFDEGQGLPT 149 (657)
T ss_pred C--CCEEEECceeecCC---CCHHHHHHHHhHHHHHHHHHHHhcCCC-eEEEEeccccccCccC-ccccccchhhcCCCC
Confidence 4 59999999975432 344567899999999999999998865 9999999999985432 34444321 23457
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-------hHHHHHHHHHcCC-CeEEEecCCCCcceeecc
Q 043169 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDM-------AYFSFTRNILQGK-PITVYRGKNHVDLARDFT 312 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 312 (421)
.|+.+|.++|.++++ ..|++++++||++||||...... .+..++..+.... ..... +.+...++++
T Consensus 150 ~Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v 223 (657)
T PRK07201 150 PYHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMV---GPDGGRTNIV 223 (657)
T ss_pred chHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccc---cCCCCeeeee
Confidence 899999999999875 25899999999999998643211 1122333331111 11222 3445678999
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCcc---ccceecCC------C------------
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKA---KKNVIEMP------G------------ 371 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~---~~~~~~~~------~------------ 371 (421)
|++|+++++..+++.+ ...+++||+++++++++.|+++.+.+.+|.+. .....|.. .
T Consensus 224 ~vddva~ai~~~~~~~--~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 301 (657)
T PRK07201 224 PVDYVADALDHLMHKD--GRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAV 301 (657)
T ss_pred eHHHHHHHHHHHhcCc--CCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHHH
Confidence 9999999999988754 35678999999999999999999999999865 22222210 0
Q ss_pred ---CC--------CCCcccCChHHHHHHc---CCCcCCCHHHHHHHHHHHHHHHhCC
Q 043169 372 ---NG--------DVPFTHANISSAQKEF---GYRPTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 372 ---~~--------~~~~~~~d~~ka~~~l---G~~p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
.+ -.....+|++++++.| |+.+. .+++.+.+.++||.++.+.
T Consensus 302 ~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~~~ 357 (657)
T PRK07201 302 ATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHLDP 357 (657)
T ss_pred HHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcCCh
Confidence 00 0012357889999988 65554 6899999999999988754
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=246.65 Aligned_cols=245 Identities=18% Similarity=0.150 Sum_probs=191.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--C
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--A 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~ 165 (421)
.++|+|+||||+|+||++++++|+++|++|++++|+.+........... .....+++++.+|++|++++.+++++. +
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~-~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDT-KKELPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHH-hhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 4788999999999999999999999999999999976433211100000 112357899999999999999999864 5
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+|+||||+|... ......+++|+.++.++++++++.+++ +||++||.++++ +...|..+
T Consensus 137 ~D~Vi~~aa~~~-----~~~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iSS~~v~~---------------p~~~~~~s 195 (390)
T PLN02657 137 VDVVVSCLASRT-----GGVKDSWKIDYQATKNSLDAGREVGAK-HFVLLSAICVQK---------------PLLEFQRA 195 (390)
T ss_pred CcEEEECCccCC-----CCCccchhhHHHHHHHHHHHHHHcCCC-EEEEEeeccccC---------------cchHHHHH
Confidence 799999998532 122355788999999999999999875 999999988752 34568899
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee-ecccHHHHHHHHHHh
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR-DFTYIDDIVKGCLGS 324 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~Dva~a~~~~ 324 (421)
|...|..+.. ...+++++++||+.+||+. ..++..+..++++.++ ++++..+ +++|++|+|++++.+
T Consensus 196 K~~~E~~l~~--~~~gl~~tIlRp~~~~~~~-------~~~~~~~~~g~~~~~~---GdG~~~~~~~I~v~DlA~~i~~~ 263 (390)
T PLN02657 196 KLKFEAELQA--LDSDFTYSIVRPTAFFKSL-------GGQVEIVKDGGPYVMF---GDGKLCACKPISEADLASFIADC 263 (390)
T ss_pred HHHHHHHHHh--ccCCCCEEEEccHHHhccc-------HHHHHhhccCCceEEe---cCCcccccCceeHHHHHHHHHHH
Confidence 9999988765 3368999999999999751 2345556678877666 5666654 679999999999999
Q ss_pred hhcCCCCCCceEEEecCC-CccCHHHHHHHHHHHhCCccccceec
Q 043169 325 LDTSAGPAPYRIFNLGNT-SPVTVPKLVNILERHLKVKAKKNVIE 368 (421)
Q Consensus 325 l~~~~~~~~~~~~~i~~~-~~~t~~el~~~l~~~~g~~~~~~~~~ 368 (421)
+.++ ...+++|||+++ +.+|++|+++++.+.+|.+.++...|
T Consensus 264 ~~~~--~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp 306 (390)
T PLN02657 264 VLDE--SKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVP 306 (390)
T ss_pred HhCc--cccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcC
Confidence 9765 345799999986 58999999999999999876554443
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=218.21 Aligned_cols=312 Identities=21% Similarity=0.258 Sum_probs=253.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH---hhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA---LLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..|..||||-+|.=|+.|++.|+.+|++|.++.|+++....++-+..-. .........+.+|++|...+.+++..++
T Consensus 27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik 106 (376)
T KOG1372|consen 27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK 106 (376)
T ss_pred cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence 3468999999999999999999999999999999998887766432211 1123567889999999999999999999
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC--CCeEEEEccccccCCCCCCCCCCCCCCCCCCChHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP--QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
|+-|+|+|+..+...+.+-++.+.++...|+..|+++.+.++. +.||...||+..||...+.|.+|..+. .|.++|+
T Consensus 107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPF-yPRSPYa 185 (376)
T KOG1372|consen 107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPF-YPRSPYA 185 (376)
T ss_pred chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCC-CCCChhH
Confidence 9999999999988878888888999999999999999987764 238999999999999999999998876 7899999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHc---CCCeEEEecCCCCcceeecccHHHHHHH
Q 043169 244 ATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ---GKPITVYRGKNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~v~Dva~a 320 (421)
++|..+-.++-.+++.+++-.+---..+--.|+...+.....+.+.+.+ |+.-.+.. |+-+..+||-|..|.++|
T Consensus 186 ~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~L--GNL~a~RDWGhA~dYVEA 263 (376)
T KOG1372|consen 186 AAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIEL--GNLSALRDWGHAGDYVEA 263 (376)
T ss_pred HhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEe--cchhhhcccchhHHHHHH
Confidence 9999999999999988887655544555566766666655555554433 44333332 678899999999999999
Q ss_pred HHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceec-------------------CCCCCCCCcccCC
Q 043169 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE-------------------MPGNGDVPFTHAN 381 (421)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~-------------------~~~~~~~~~~~~d 381 (421)
++.+|+++.. ..|.|+.++..+++|+++.--..+|....++-.. .-++.+......|
T Consensus 264 MW~mLQ~d~P----dDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd~LqGd 339 (376)
T KOG1372|consen 264 MWLMLQQDSP----DDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVDTLQGD 339 (376)
T ss_pred HHHHHhcCCC----CceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccCcchhhhhcCC
Confidence 9999998733 5689999999999999999988888654433110 1134455556689
Q ss_pred hHHHHHHcCCCcCCCHHHHHHHHHHH
Q 043169 382 ISSAQKEFGYRPTTDLQTGLKKFVRW 407 (421)
Q Consensus 382 ~~ka~~~lG~~p~~~l~e~l~~~~~~ 407 (421)
.+||++.|||+|+.+++|.+++|+..
T Consensus 340 asKAk~~LgW~pkv~f~eLVkeMv~~ 365 (376)
T KOG1372|consen 340 ASKAKKTLGWKPKVTFPELVKEMVAS 365 (376)
T ss_pred hHHHHHhhCCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999864
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=231.51 Aligned_cols=258 Identities=22% Similarity=0.285 Sum_probs=185.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHh----h-----cCCceEEEEcccCCH------
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKAL----L-----NNHGVFVIEGDINDA------ 154 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~----~-----~~~~v~~~~~Dl~d~------ 154 (421)
+|+|||||||||++++++|+++| ++|++++|+.+... ..+...... . ...++.++.+|++++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~ 79 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEH-AMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD 79 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHH-HHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence 48999999999999999999999 67999999654211 111111100 0 015799999999853
Q ss_pred HHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 155 KLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 155 ~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
+...++.+.+ |+|||||+.... ........++|+.|+.+++++|.+.+.+ +||++||.++|+.....+..+++.
T Consensus 80 ~~~~~~~~~~--d~vih~a~~~~~---~~~~~~~~~~nv~g~~~ll~~a~~~~~~-~~v~iSS~~v~~~~~~~~~~~~~~ 153 (367)
T TIGR01746 80 AEWERLAENV--DTIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAK-PLHYVSTISVLAAIDLSTVTEDDA 153 (367)
T ss_pred HHHHHHHhhC--CEEEeCCcEecc---CCcHHHHhhhhhHHHHHHHHHHhhCCCc-eEEEEccccccCCcCCCCcccccc
Confidence 4566666655 999999997542 2334567789999999999999998865 799999999997644333333322
Q ss_pred C----CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 235 T----DQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 235 ~----~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
. ..+.+.|+.+|+.+|.+++.+.+. |++++++|||.++|+..... ..+..++.......... ....
T Consensus 154 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p-----~~~~ 227 (367)
T TIGR01746 154 IVTPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYP-----DSPE 227 (367)
T ss_pred ccccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCC-----CCCc
Confidence 1 123468999999999999987765 99999999999999743321 22333444333322111 1122
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccc
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK 363 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~ 363 (421)
...+|+|++|+|++++.++........+++||+++++++++.|+++.+.+ .|.+.+
T Consensus 228 ~~~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 228 LTEDLTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred cccCcccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 46789999999999999987652212378999999999999999999998 776543
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=247.00 Aligned_cols=267 Identities=19% Similarity=0.270 Sum_probs=200.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
...|+||||||+||||++|++.|.++|++|... .+|++|.+.+.++++..+||
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~---------------------------~~~l~d~~~v~~~i~~~~pd 430 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG---------------------------KGRLEDRSSLLADIRNVKPT 430 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCCeEEee---------------------------ccccccHHHHHHHHHhhCCC
Confidence 356799999999999999999999999987421 13688999999999988999
Q ss_pred EEEEcccccC---chhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCC------CCCCCCCCCCCCCC
Q 043169 168 HVMHLAAQAG---VRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLN------ENVPFSEADRTDQP 238 (421)
Q Consensus 168 ~vi~~Ag~~~---~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~------~~~~~~e~~~~~~~ 238 (421)
+|||+|+..+ .+.++.++...+++|+.|+.+|+++|++.++ ++|++||..+|+.. ...++.|++.+.++
T Consensus 431 ~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~--~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~ 508 (668)
T PLN02260 431 HVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL--LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFT 508 (668)
T ss_pred EEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC--eEEEEcccceecCCcccccccCCCCCcCCCCCCC
Confidence 9999999864 3345678889999999999999999999986 67888888888632 13478888776555
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCe-EEEecCCCCcceeecccHHHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPI-TVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~Dv 317 (421)
.+.|+.||+++|.++..+. ++.++|+.++||..... ..+|+..+++.... .+ ..+..+++|+
T Consensus 509 ~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~---~~nfv~~~~~~~~~~~v---------p~~~~~~~~~ 571 (668)
T PLN02260 509 GSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN---PRNFITKISRYNKVVNI---------PNSMTVLDEL 571 (668)
T ss_pred CChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC---ccHHHHHHhccceeecc---------CCCceehhhH
Confidence 6899999999999998874 35677888888643211 12455555554432 22 1246778899
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCcccccee---cCC--CCCCCCcccCChHHHHHHcCCC
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI---EMP--GNGDVPFTHANISSAQKEFGYR 392 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~---~~~--~~~~~~~~~~d~~ka~~~lG~~ 392 (421)
+.+++.++... .+++||+++++.+|+.|+++.+.+.++....+..+ ..+ .....+...+|++|+++.+|.
T Consensus 572 ~~~~~~l~~~~----~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~~l~~~k~~~~~~~- 646 (668)
T PLN02260 572 LPISIEMAKRN----LRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNNEMDASKLKKEFPE- 646 (668)
T ss_pred HHHHHHHHHhC----CCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccccccHHHHHHhCcc-
Confidence 99888888643 25899999999999999999999988522111111 111 122223337999999988998
Q ss_pred cCCCHHHHHHHHHH
Q 043169 393 PTTDLQTGLKKFVR 406 (421)
Q Consensus 393 p~~~l~e~l~~~~~ 406 (421)
+. +|+|+|.+++.
T Consensus 647 ~~-~~~~~l~~~~~ 659 (668)
T PLN02260 647 LL-SIKESLIKYVF 659 (668)
T ss_pred cc-chHHHHHHHHh
Confidence 65 89999998874
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=206.07 Aligned_cols=280 Identities=21% Similarity=0.223 Sum_probs=198.8
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEEc
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHL 172 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~~ 172 (421)
|+||||||+||++|+..|.+.||+|+++.|+....+... ...+. ..+.+.+.... .+|+|||+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~---------~~~v~-------~~~~~~~~~~~-~~DavINL 63 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL---------HPNVT-------LWEGLADALTL-GIDAVINL 63 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc---------Ccccc-------ccchhhhcccC-CCCEEEEC
Confidence 589999999999999999999999999999665322211 11111 22233333332 35999999
Q ss_pred ccccCc--hhhccCCchhhhhhHHHHHHHHHHHHhcCCC-CeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 173 AAQAGV--RYAMQNPHSYVHSNIAGLVTLLEACKSANPQ-PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 173 Ag~~~~--~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||..-. +++.+..+...+.-+..|..|.++..+...+ +.+|.-|..+.||......++|++++ ..+.-+..-.+.
T Consensus 64 AG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~--g~~Fla~lc~~W 141 (297)
T COG1090 64 AGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPP--GDDFLAQLCQDW 141 (297)
T ss_pred CCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCC--CCChHHHHHHHH
Confidence 997533 3455566788999999999999998744322 26777777888999999999998654 333344555566
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
|..+..... .|.+++.+|.|+|.++... .+..++.....+---.+ |+|++.++|||++|+++++..++++.
T Consensus 142 E~~a~~a~~-~gtRvvllRtGvVLs~~GG---aL~~m~~~fk~glGG~~----GsGrQ~~SWIhieD~v~~I~fll~~~- 212 (297)
T COG1090 142 EEEALQAQQ-LGTRVVLLRTGVVLSPDGG---ALGKMLPLFKLGLGGKL----GSGRQWFSWIHIEDLVNAILFLLENE- 212 (297)
T ss_pred HHHHhhhhh-cCceEEEEEEEEEecCCCc---chhhhcchhhhccCCcc----CCCCceeeeeeHHHHHHHHHHHHhCc-
Confidence 766666544 4999999999999998554 23333322222221222 89999999999999999999999986
Q ss_pred CCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCC------CCCCCcccCCh-----HHHHHHcCCCcCC-CH
Q 043169 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG------NGDVPFTHANI-----SSAQKEFGYRPTT-DL 397 (421)
Q Consensus 330 ~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~------~~~~~~~~~d~-----~ka~~~lG~~p~~-~l 397 (421)
..-+.||.+.+.|++.+|+.+.+.+.++++.. .+.|. -++.....++. .|+ ...||+.+| ++
T Consensus 213 --~lsGp~N~taP~PV~~~~F~~al~r~l~RP~~---~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl-~~aGF~F~y~dl 286 (297)
T COG1090 213 --QLSGPFNLTAPNPVRNKEFAHALGRALHRPAI---LPVPSFALRLLLGEMADLLLGGQRVLPKKL-EAAGFQFQYPDL 286 (297)
T ss_pred --CCCCcccccCCCcCcHHHHHHHHHHHhCCCcc---ccCcHHHHHHHhhhhHHHHhccchhhHHHH-HHCCCeeecCCH
Confidence 33579999999999999999999999997653 23331 12222223333 444 458888886 89
Q ss_pred HHHHHHHHH
Q 043169 398 QTGLKKFVR 406 (421)
Q Consensus 398 ~e~l~~~~~ 406 (421)
+++|.+.+.
T Consensus 287 ~~AL~~il~ 295 (297)
T COG1090 287 EEALADILK 295 (297)
T ss_pred HHHHHHHHh
Confidence 999998774
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=206.92 Aligned_cols=236 Identities=17% Similarity=0.172 Sum_probs=172.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
.|+||||||+||||++++++|+++|++|++++|+.+. ...... ....++.++++|++|.+++.+++++.
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~----~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDA----LDDLKA--RYGDRLWVLQLDVTDSAAVRAVVDRAFAALG 75 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH--hccCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999985321 111111 12347889999999999998887652
Q ss_pred CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||...... +.++++..+++|+.|+.++++++ ++.+. ++||++||..... ..
T Consensus 76 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~------------~~ 142 (276)
T PRK06482 76 RIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGG-GRIVQVSSEGGQI------------AY 142 (276)
T ss_pred CCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcCccccc------------CC
Confidence 5799999999864322 22345678899999999999997 44443 4999999976431 12
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccc---cCCCCCCC--------ChHHHHHHHHHcCCCeEEEecC
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTV---YGPWGRPD--------MAYFSFTRNILQGKPITVYRGK 302 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v---~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
++...|+.||++.|.+++.++++ +|++++++|||.+ ||++.... .....+.+.+. .....+
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---- 217 (276)
T PRK06482 143 PGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALA-DGSFAI---- 217 (276)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHh-hccCCC----
Confidence 35688999999999999999876 5999999999988 55432211 11112222222 221111
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCC
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKV 360 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~ 360 (421)
+.+++|++++++.++..+ ..+..||+++++..+..|+++.+.+.++.
T Consensus 218 --------~~d~~~~~~a~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK06482 218 --------PGDPQKMVQAMIASADQT---PAPRRLTLGSDAYASIRAALSERLAALEA 264 (276)
T ss_pred --------CCCHHHHHHHHHHHHcCC---CCCeEEecChHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998755 23567999999889998888877777754
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=223.19 Aligned_cols=259 Identities=15% Similarity=0.192 Sum_probs=184.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC---cEEEEeCCCCCCChhHHHHHHHh-------------h------cCCceE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD---GVVGLDNFNNYYDPSLKKARKAL-------------L------NNHGVF 145 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~-------------~------~~~~v~ 145 (421)
.++|+|||||||||||++|++.|++.+. +|+++.|..+...... ...... . ...++.
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~e-Rl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~ 195 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIE-RLKNEVIDAELFKCLQETHGKSYQSFMLSKLV 195 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHH-HHHHHHhhhhhHHHHHHhcCccccccccccEE
Confidence 5789999999999999999999998764 6899999665332221 111110 0 134689
Q ss_pred EEEcccCCH------HHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 146 VIEGDINDA------KLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 146 ~~~~Dl~d~------~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
++.+|++++ +..+.+.++ +|+|||+|+.... ..+++..+++|+.|+.+++++|++.+..+++|++||+.
T Consensus 196 ~v~GDl~d~~LGLs~~~~~~L~~~--vDiVIH~AA~v~f---~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTay 270 (605)
T PLN02503 196 PVVGNVCESNLGLEPDLADEIAKE--VDVIINSAANTTF---DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAY 270 (605)
T ss_pred EEEeeCCCcccCCCHHHHHHHHhc--CCEEEECcccccc---ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCce
Confidence 999999986 445555554 5999999998653 25577889999999999999998875445899999999
Q ss_pred ccCCCCC----CCCCCC---------------------------------C--------------------CCCCCCChH
Q 043169 220 VYGLNEN----VPFSEA---------------------------------D--------------------RTDQPASLY 242 (421)
Q Consensus 220 v~g~~~~----~~~~e~---------------------------------~--------------------~~~~~~~~Y 242 (421)
+||...+ .++... . ....-.+.|
T Consensus 271 VyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtY 350 (605)
T PLN02503 271 VNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTY 350 (605)
T ss_pred eecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChH
Confidence 9986531 122100 0 001123779
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccC----------CCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYG----------PWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
..||..+|.++.+... +++++|+||+.|.+ ++... ..+.++ .+.+|. +..+. ++++...|++
T Consensus 351 t~TK~lAE~lV~~~~~--~LPv~IvRPsiV~st~~eP~pGw~d~~~~--~~p~~~-~~g~G~-lr~~~--~~~~~~~DiV 422 (605)
T PLN02503 351 VFTKAMGEMVINSMRG--DIPVVIIRPSVIESTWKDPFPGWMEGNRM--MDPIVL-YYGKGQ-LTGFL--ADPNGVLDVV 422 (605)
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEcCCEecccccCCccccccCccc--cchhhh-heeccc-eeEEE--eCCCeeEeEE
Confidence 9999999999987553 79999999999943 32211 111221 122333 33222 6789999999
Q ss_pred cHHHHHHHHHHhhhcC--CCCCCceEEEecCC--CccCHHHHHHHHHHHhCC
Q 043169 313 YIDDIVKGCLGSLDTS--AGPAPYRIFNLGNT--SPVTVPKLVNILERHLKV 360 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~--~~~~~~~~~~i~~~--~~~t~~el~~~l~~~~g~ 360 (421)
+||.|+.+++.++... .....+.+||++++ +|+++.|+.+.+.+.+..
T Consensus 423 PVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 423 PADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred eecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 9999999999884432 11235799999988 899999999999987754
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=207.49 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=166.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+|+||+++++.|+++|++|++++|+.+..+...+... .....+.++++|++|.+++.++++..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEIN---KAGGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH---hcCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996643333222221 12346788999999999999888764
Q ss_pred --CCcEEEEcccccCchh----hccCCchhhhhhHHH----HHHHHHHH-HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAG----LVTLLEAC-KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g----~~~l~~~~-~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||...... ..++++..+++|+.+ +.++++.+ ++.+. ++||++||...+.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~-~~iv~~ss~~~~~----------- 149 (262)
T PRK13394 82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRG-GVVIYMGSVHSHE----------- 149 (262)
T ss_pred cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCC-cEEEEEcchhhcC-----------
Confidence 4799999999864321 223455778899999 56666666 55554 4999999975432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC---------hHHHHHHHHHcCCCeEEEec
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM---------AYFSFTRNILQGKPITVYRG 301 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 301 (421)
..++...|+.+|.+.+.+++.++++ .++++++++||.+++|...... ........++.
T Consensus 150 -~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 219 (262)
T PRK13394 150 -ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVML--------- 219 (262)
T ss_pred -CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHh---------
Confidence 1234578999999999999998876 4899999999999998432110 00011111111
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+...++|++++|++++++.++........|+.|++.++.
T Consensus 220 --~~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g~ 259 (262)
T PRK13394 220 --GKTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHGW 259 (262)
T ss_pred --cCCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCce
Confidence 2234568999999999999999865444568899998764
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-25 Score=203.19 Aligned_cols=224 Identities=17% Similarity=0.165 Sum_probs=162.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+++||||+|+||++++++|+++|++|++++|+.. ........ .....+.++.+|++|.+++.++++..
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-----VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-----HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998531 11111111 12346788999999999988888764
Q ss_pred ---CCcEEEEcccccC---c--hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAG---V--RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~---~--~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||... + ....++.+..+++|+.++..+++.+ ++.+. ++||++||...++
T Consensus 81 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~~sS~~~~~---------- 149 (260)
T PRK12823 81 AFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGG-GAIVNVSSIATRG---------- 149 (260)
T ss_pred HcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEcCccccC----------
Confidence 6899999998532 1 1233445677899999877666554 44443 3999999987653
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC-----------CCChHHHHHHHHHcCCCeEE
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGR-----------PDMAYFSFTRNILQGKPITV 298 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~-----------~~~~~~~~~~~~~~~~~~~~ 298 (421)
.+..+|+.||.+.+.+++.++.++ |+++++|+||+|++|... .......+...+..+.+..
T Consensus 150 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 224 (260)
T PRK12823 150 ----INRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMK- 224 (260)
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCcc-
Confidence 123579999999999999998775 899999999999997311 0111223333333333322
Q ss_pred EecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 299 YRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 299 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
-+.+++|+|++++.++........|.++++.+++
T Consensus 225 -----------~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 225 -----------RYGTIDEQVAAILFLASDEASYITGTVLPVGGGD 258 (260)
T ss_pred -----------cCCCHHHHHHHHHHHcCcccccccCcEEeecCCC
Confidence 2457899999999998765445678999998764
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=220.97 Aligned_cols=237 Identities=19% Similarity=0.184 Sum_probs=173.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++++++|+++|++|++++|.... ....+++++.+|++|.. +.+++.++ |+||
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~------------~~~~~ve~v~~Dl~d~~-l~~al~~~--D~VI 65 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD------------ALDPRVDYVCASLRNPV-LQELAGEA--DAVI 65 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh------------cccCCceEEEccCCCHH-HHHHhcCC--CEEE
Confidence 579999999999999999999999999999984321 11247889999999985 77777765 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+|+.... ....+|+.|+.+++++|++.+. ++|++||. +|.. ..|. .+|
T Consensus 66 HLAa~~~~--------~~~~vNv~Gt~nLleAA~~~Gv--RiV~~SS~--~G~~---------------~~~~----~aE 114 (699)
T PRK12320 66 HLAPVDTS--------APGGVGITGLAHVANAAARAGA--RLLFVSQA--AGRP---------------ELYR----QAE 114 (699)
T ss_pred EcCccCcc--------chhhHHHHHHHHHHHHHHHcCC--eEEEEECC--CCCC---------------cccc----HHH
Confidence 99986321 1235899999999999999985 79999986 3310 0122 356
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCC--ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPD--MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
.++.. ++++++++|++++|||+.... ..+..++.....++++ .++|++|++++++.+++.+
T Consensus 115 ~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI-------------~vIyVdDvv~alv~al~~~ 177 (699)
T PRK12320 115 TLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARPI-------------RVLHLDDLVRFLVLALNTD 177 (699)
T ss_pred HHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCce-------------EEEEHHHHHHHHHHHHhCC
Confidence 55443 569999999999999965432 2344555544444443 3589999999999998754
Q ss_pred CCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHH
Q 043169 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTG 400 (421)
Q Consensus 329 ~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~ 400 (421)
. +++|||++++.+|+.|+++++....+. ... . ...+.....-|...++..++|.|+.+|+..
T Consensus 178 ---~-~GiyNIG~~~~~Si~el~~~i~~~~p~-~~~----~-~~~~~~~~~pdi~~a~~~~~w~~~~~~~~~ 239 (699)
T PRK12320 178 ---R-NGVVDLATPDTTNVVTAWRLLRSVDPH-LRT----R-RVRSWEQLIPEVDIAAVQEDWNFEFGWQAT 239 (699)
T ss_pred ---C-CCEEEEeCCCeeEHHHHHHHHHHhCCC-ccc----c-ccccHHHhCCCCchhhhhcCCCCcchHHHH
Confidence 1 359999999999999999998776321 111 1 122333345677777788999999876654
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=206.99 Aligned_cols=233 Identities=14% Similarity=0.129 Sum_probs=169.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+||||||+|+||+++++.|+++|++|++..++.+.... .+..........++.++.+|++|.++++++++++
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDA-AEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHH-HHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999988775432111 0111111112346788999999999999888764
Q ss_pred --CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+.. ..++||++||...|.. .
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~------------~ 199 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQP------------S 199 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCC------------C
Confidence 68999999997532 12345567899999999999999987542 1249999999887642 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
.....|+.||.+.+.+++.++.+ .||++++|+||.+.+|..............+....+ ...+.+
T Consensus 200 ~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~p------------~~r~~~ 267 (300)
T PRK06128 200 PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSETP------------MKRPGQ 267 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCCC------------CCCCcC
Confidence 34567999999999999999876 489999999999999853221111122222222211 123668
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
++|+|.+++.++........|++|++.++..+
T Consensus 268 p~dva~~~~~l~s~~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 268 PVEMAPLYVLLASQESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred HHHHHHHHHHHhCccccCccCcEEeeCCCEeC
Confidence 89999999999876544567899999987643
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=212.08 Aligned_cols=252 Identities=17% Similarity=0.113 Sum_probs=175.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|++|||||+||||++++++|+++|++|++++|+.+..+....... ....++.++.+|++|.+++.++++..
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELR---AQGAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999986543222211111 11346888999999999999988764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCC-----CeEEEEccccccCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQ-----PSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~-----~riV~~SS~~v~g~~~~~~ 228 (421)
++|+||||||..... ...++++..+++|+.|+.++++++ .+.+.+ ++||++||...+..
T Consensus 80 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~----- 154 (287)
T PRK06194 80 RFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLA----- 154 (287)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC-----
Confidence 579999999986542 123445567999999988877774 444321 48999999876531
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
..+...|+.+|++.+.+++.+++++ +++++.+.||.|..+-. ....+++..++ +
T Consensus 155 -------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~-----------~~~~~~~~~~~---~ 213 (287)
T PRK06194 155 -------PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIW-----------QSERNRPADLA---N 213 (287)
T ss_pred -------CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccc-----------cccccCchhcc---c
Confidence 1345789999999999999988764 48888999988766521 12233444444 4
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChH
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANIS 383 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 383 (421)
++.+.++|++++|.+.+..... .++..|+++.+.+...........+.....+......|.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~------------------~~s~~dva~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK06194 214 TAPPTRSQLIAQAMSQKAVGSG------------------KVTAEEVAQLVFDAIRAGRFYIYSHPQALASVRTRMEDIV 275 (287)
T ss_pred CccccchhhHHHHHHHhhhhcc------------------CCCHHHHHHHHHHHHHcCCeEEEcCHHHHHHHHHHHHHHH
Confidence 5678888999999887653220 1788999998888775433222222222233334445555
Q ss_pred HH
Q 043169 384 SA 385 (421)
Q Consensus 384 ka 385 (421)
++
T Consensus 276 ~~ 277 (287)
T PRK06194 276 QQ 277 (287)
T ss_pred Hh
Confidence 55
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-25 Score=205.98 Aligned_cols=247 Identities=16% Similarity=0.115 Sum_probs=175.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+|+||.++++.|+++|++|++++|+.+..+....... ......++.++.+|++|++++.+++++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIE-ALKGAGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH-hccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999986432221111111 0011246889999999999998888764
Q ss_pred --CCcEEEEcccccCc--h---hhccCCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV--R---YAMQNPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~--~---~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||.... . ...++...++++|+.++.++++++.+.. ..++||++||...+.
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~------------ 151 (276)
T PRK05875 84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN------------ 151 (276)
T ss_pred cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC------------
Confidence 68999999996432 1 1223456788999999999988775432 124899999987652
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+.++...|+.+|++.|.+++.++++. ++++++|+||.+.++..............+....+ ...+
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~ 219 (276)
T PRK05875 152 THRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRACTP------------LPRV 219 (276)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcCCC------------CCCC
Confidence 12346789999999999999998774 69999999999987643211100111112221111 1236
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc----CHHHHHHHHHHHhC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV----TVPKLVNILERHLK 359 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~----t~~el~~~l~~~~g 359 (421)
++++|+|++++.+++.+.....|++++++++..+ +..|+++.+.+..+
T Consensus 220 ~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 220 GEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred cCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 7899999999999987644556899999988765 66666666555443
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=193.37 Aligned_cols=210 Identities=16% Similarity=0.106 Sum_probs=156.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|.++|||||+|||.+++++|++.|++|+++.|+.++.++.. .+. ....+.++..|++|.+++..+++..
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la----~~~-~~~~~~~~~~DVtD~~~~~~~i~~~~~ 77 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALA----DEI-GAGAALALALDVTDRAAVEAAIEALPE 77 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHH----Hhh-ccCceEEEeeccCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999765443322 222 2257899999999999977777643
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||.+... ...++++.++++|+.|..+..+++. +.+. ++||++||.+..
T Consensus 78 ~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~-G~IiN~~SiAG~------------ 144 (246)
T COG4221 78 EFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKS-GHIINLGSIAGR------------ 144 (246)
T ss_pred hhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCC-ceEEEecccccc------------
Confidence 689999999997542 2345677899999999888777763 3332 399999997642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC--ChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPD--MAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.+.+....|+.+|++...+...++++. +|+++.|.||.|-+.....- ..-..-.....+ .
T Consensus 145 ~~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~---------------~ 209 (246)
T COG4221 145 YPYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYK---------------G 209 (246)
T ss_pred ccCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHhc---------------c
Confidence 133567889999999999999999884 89999999999854311100 000011111111 2
Q ss_pred eecccHHHHHHHHHHhhhcCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~ 329 (421)
...+..+|+|++++.+++.+.
T Consensus 210 ~~~l~p~dIA~~V~~~~~~P~ 230 (246)
T COG4221 210 GTALTPEDIAEAVLFAATQPQ 230 (246)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 247889999999999999884
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=208.29 Aligned_cols=234 Identities=17% Similarity=0.108 Sum_probs=169.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+.+|+++||||+|+||.++++.|+++|++|++++|+.+..+ ..... ....+.++.+|++|.+++.++++.+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~----~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARAR----LAALE--IGPAAIAVSLDVTRQDSIDRIVAAAVE 76 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH----HHHHH--hCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998543221 11111 1346889999999999999988764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccc-cCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSV-YGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v-~g~~~~~~~~e~ 232 (421)
++|+||||||..... ...++++..+++|+.++.++++++.+. +..++||++||... ++
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------- 146 (257)
T PRK07067 77 RFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRG---------- 146 (257)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCC----------
Confidence 689999999975421 123456678999999999999988543 22248999999643 22
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcC---CCeEEEecCCCCc
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQG---KPITVYRGKNHVD 306 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 306 (421)
.++...|+.||.+.+.+++.++.+ +|+++++|+||.++++...... ..+...... .....+ +...
T Consensus 147 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~ 217 (257)
T PRK07067 147 ---EALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVD---ALFARYENRPPGEKKRLV---GEAV 217 (257)
T ss_pred ---CCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhh---hhhhhccCCCHHHHHHHH---hhcC
Confidence 235678999999999999998875 5899999999999997432110 000000000 000000 1223
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
..+.+++++|+|++++.++........|.+|++.++..+
T Consensus 218 ~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~~~ 256 (257)
T PRK07067 218 PLGRMGVPDDLTGMALFLASADADYIVAQTYNVDGGNWM 256 (257)
T ss_pred CCCCccCHHHHHHHHHHHhCcccccccCcEEeecCCEeC
Confidence 355789999999999999987655567899999887654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=202.72 Aligned_cols=233 Identities=14% Similarity=0.107 Sum_probs=168.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||.+++++|+++|++|++++|+.+..+....... ....++.++.+|++|.++++++++++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK---GQGLSAHALAFDVTDHDAVRAAIDAFEA 83 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999996543222111111 11245888999999999999998764
Q ss_pred ---CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHhc---CCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKSA---NPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~---~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||...... ..++.+..+++|+.++.++++++.+. ...++||++||.....
T Consensus 84 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~------------ 151 (255)
T PRK07523 84 EIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL------------ 151 (255)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc------------
Confidence 5899999999864321 23334677889999999999988643 1134999999976431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+.+....|+.+|.+.+.+++.++.+ +|+++++++||.+.++..........+...+.+..+ ...+
T Consensus 152 ~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~------------~~~~ 219 (255)
T PRK07523 152 ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTP------------AGRW 219 (255)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCC------------CCCC
Confidence 2245678999999999999998864 589999999999998843211001122222222221 2236
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
..++|+|.+++.++........|.++++.++...+
T Consensus 220 ~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 220 GKVEELVGACVFLASDASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred cCHHHHHHHHHHHcCchhcCccCcEEEECCCeecc
Confidence 78999999999999866455678999998875443
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=201.00 Aligned_cols=228 Identities=19% Similarity=0.204 Sum_probs=167.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+..+....... ....++.++.+|++|.++++++++..
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIV---ADGGTAIAVQVDVSDPDSAKAMADATVS 79 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999996432211111111 12346788999999999998888764
Q ss_pred ---CCcEEEEcccccCc-------hhhccCCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-------RYAMQNPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||.... ....++++..+++|+.++.++++++.+.. ..++||++||...|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 150 (250)
T PRK07774 80 AFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL--------- 150 (250)
T ss_pred HhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC---------
Confidence 58999999997532 11233455789999999999999886431 124999999988752
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.+.|+.||++.+.+++.+++++ |+++++++||.+.++...... ...+...+.++.+..
T Consensus 151 ------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~-~~~~~~~~~~~~~~~----------- 212 (250)
T PRK07774 151 ------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVT-PKEFVADMVKGIPLS----------- 212 (250)
T ss_pred ------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccC-CHHHHHHHHhcCCCC-----------
Confidence 35679999999999999998874 799999999999887543211 123444444444321
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
-+.+++|+|++++.++........|++|++.++..+
T Consensus 213 -~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g~~~ 248 (250)
T PRK07774 213 -RMGTPEDLVGMCLFLLSDEASWITGQIFNVDGGQII 248 (250)
T ss_pred -CCcCHHHHHHHHHHHhChhhhCcCCCEEEECCCeec
Confidence 145689999999999876533457899999987654
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=199.60 Aligned_cols=232 Identities=16% Similarity=0.112 Sum_probs=164.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
.++++||||||+|+||++++++|+++|++|++++|+.....+.... .........+.++.+|++|.+++.++++.+
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAA-ELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH-HHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999864321111111 111112246889999999999999988864
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC--CCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN--PQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||..... ...++++.++++|+.|+.++++++.+.- ..+.+++++|.... .+.
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 150 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE------------RPL 150 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc------------CCC
Confidence 689999999975431 1223456789999999999999985421 12367777663321 123
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
++...|+.||+++|.+++.+++++ ++++++++||.++||..... ....+......+.+.. .+.++
T Consensus 151 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~ 217 (249)
T PRK09135 151 KGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNS-FDEEARQAILARTPLK------------RIGTP 217 (249)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCcccccc-CCHHHHHHHHhcCCcC------------CCcCH
Confidence 567899999999999999999875 69999999999999975432 1122222333333211 12358
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
+|+|+++..++... ....|++|+++++..++
T Consensus 218 ~d~a~~~~~~~~~~-~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 218 EDIAEAVRFLLADA-SFITGQILAVDGGRSLT 248 (249)
T ss_pred HHHHHHHHHHcCcc-ccccCcEEEECCCeecc
Confidence 99999997666543 24578999999987654
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=203.04 Aligned_cols=244 Identities=16% Similarity=0.111 Sum_probs=167.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+..++...... ....++.++.+|++|.+++.++++.+
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLR---AEGFDVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999986543222211111 11245888999999999999988765
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++.+..+++|+.|+.++++++. +.+..++||++||...+.
T Consensus 80 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~----------- 148 (275)
T PRK05876 80 LLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV----------- 148 (275)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc-----------
Confidence 689999999985432 2233456778999999999888874 343235999999987653
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.++...|+.||.+.+.+++.++.+ .|+++++++||.+.++........ .............. +.....++
T Consensus 149 -~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~ 222 (275)
T PRK05876 149 -PNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERI--RGAACAQSSTTGSP---GPLPLQDD 222 (275)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhh--cCcccccccccccc---cccccccc
Confidence 2245688999999988777777755 489999999999988743211000 00000000111111 22234567
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHh
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHL 358 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~ 358 (421)
+++++|+|++++.++..+ +.|.+.+ +....++.+...+..
T Consensus 223 ~~~~~dva~~~~~ai~~~------~~~~~~~--~~~~~~~~~~~~~~~ 262 (275)
T PRK05876 223 NLGVDDIAQLTADAILAN------RLYVLPH--AASRASIRRRFERID 262 (275)
T ss_pred CCCHHHHHHHHHHHHHcC------CeEEecC--hhhHHHHHHHHHHHH
Confidence 899999999999999765 3455542 344455555444443
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=198.29 Aligned_cols=229 Identities=17% Similarity=0.095 Sum_probs=168.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+||||||+|+||++++++|+++|++|+++.|+......... ........++.++.+|++|.+++.+++++.
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELV--EAVEALGRRAQAVQADVTDKAALEAAVAAAVER 81 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH--HHHHhcCCceEEEECCcCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999887775532111111 111112356889999999999999988764
Q ss_pred --CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+|||+||...... ...+++..+++|+.++.++++.+ ++.+. +++|++||...+..
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~i~~SS~~~~~~----------- 149 (249)
T PRK12825 82 FGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRG-GRIVNISSVAGLPG----------- 149 (249)
T ss_pred cCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEECccccCCC-----------
Confidence 6899999999754322 23345678999999999998887 44554 49999999876531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
......|+.+|.+.+.+++.++++ .|++++++|||.++|+....... ..... ..+ ......+
T Consensus 150 -~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~-~~~~~----~~~---------~~~~~~~ 214 (249)
T PRK12825 150 -WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIE-EAREA----KDA---------ETPLGRS 214 (249)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccc-hhHHh----hhc---------cCCCCCC
Confidence 234578999999999999988776 58999999999999985432211 11111 100 0112238
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
++++|+++++..+++.......|++|+++++.++
T Consensus 215 ~~~~dva~~~~~~~~~~~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 215 GTPEDIARAVAFLCSDASDYITGQVIEVTGGVDV 248 (249)
T ss_pred cCHHHHHHHHHHHhCccccCcCCCEEEeCCCEee
Confidence 9999999999999977655567999999987653
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=199.01 Aligned_cols=229 Identities=17% Similarity=0.097 Sum_probs=168.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++.+|+|+||||+|+||.+++++|+++|++|++++|+.+......... .....++.++.+|++|.+++.++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l---~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELV---EAAGGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999643221111111 112245889999999999999998764
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ....+++...+++|+.++.++++++. +.+. ++||++||...++.
T Consensus 80 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~ss~~~~~~---------- 148 (251)
T PRK12826 80 DFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG-GRIVLTSSVAGPRV---------- 148 (251)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEEechHhhcc----------
Confidence 57999999998654 22334556789999999999998873 4443 48999999876511
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+......|+.+|.+.+.+++.++.+ .|+++++++||.++||....... ..+...+....++ ..
T Consensus 149 -~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~ 214 (251)
T PRK12826 149 -GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGD-AQWAEAIAAAIPL------------GR 214 (251)
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCc-hHHHHHHHhcCCC------------CC
Confidence 1234578999999999999998766 48999999999999985432111 1112222222221 14
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+++++|+|++++.++........|++|++.++.
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 215 LGEPEDIAAAVLFLASDEARYITGQTLPVDGGA 247 (251)
T ss_pred CcCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 789999999999988765445678999998765
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=203.82 Aligned_cols=218 Identities=19% Similarity=0.208 Sum_probs=133.1
Q ss_pred EEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHH--------h---hcCCceEEEEcccCC------HH
Q 043169 95 VTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKA--------L---LNNHGVFVIEGDIND------AK 155 (421)
Q Consensus 95 ITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~--------~---~~~~~v~~~~~Dl~d------~~ 155 (421)
|||||||+|++|+++|++++. +|++++|..+..+ +.++.... . ....+++++.+|+++ .+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~-~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQS-ALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHH-HHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCccccc-chhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence 799999999999999999986 8999999654211 11111100 1 126799999999996 45
Q ss_pred HHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCC------C
Q 043169 156 LLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVP------F 229 (421)
Q Consensus 156 ~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~------~ 229 (421)
...++.+++ |+|||||+.... ..+.....++|+.||.++++.|.+.+.+ +|+|+||+.+.+...... .
T Consensus 80 ~~~~L~~~v--~~IiH~Aa~v~~---~~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iSTa~v~~~~~~~~~~~~~~~ 153 (249)
T PF07993_consen 80 DYQELAEEV--DVIIHCAASVNF---NAPYSELRAVNVDGTRNLLRLAAQGKRK-RFHYISTAYVAGSRPGTIEEKVYPE 153 (249)
T ss_dssp HHHHHHHH----EEEE--SS-SB---S-S--EEHHHHHHHHHHHHHHHTSSS----EEEEEEGGGTTS-TTT--SSS-HH
T ss_pred Hhhcccccc--ceeeecchhhhh---cccchhhhhhHHHHHHHHHHHHHhccCc-ceEEeccccccCCCCCccccccccc
Confidence 677777777 999999998653 2466678999999999999999976655 999999955554333211 1
Q ss_pred CCC--CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC----CCChHHHHHHHHHcCCCeEEEecCC
Q 043169 230 SEA--DRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR----PDMAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 230 ~e~--~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
.++ +......+.|..||+.+|.+++++.++.|++++|+|||.|+|.... .......++......+..+... +
T Consensus 154 ~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~--~ 231 (249)
T PF07993_consen 154 EEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLP--G 231 (249)
T ss_dssp H--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-S--B
T ss_pred ccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCccccc--C
Confidence 111 1222345789999999999999999888999999999999994322 2332444444444433333221 3
Q ss_pred CCcceeecccHHHHHHHH
Q 043169 304 HVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~ 321 (421)
+.+...++++||.+|++|
T Consensus 232 ~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 232 DPDARLDLVPVDYVARAI 249 (249)
T ss_dssp ---TT--EEEHHHHHHHH
T ss_pred CCCceEeEECHHHHHhhC
Confidence 445679999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=198.75 Aligned_cols=230 Identities=17% Similarity=0.114 Sum_probs=163.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+|+||||+|+||.+++++|+++|++|++++|+.+..+....... ....++.++.+|++|.+++.++++..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQ---KAGGKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999996543322211111 12357889999999999999888764
Q ss_pred --CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
.+|+||||||...... ..++.+..+++|+.++.++++.+ ++.+. ++||++||...+.
T Consensus 79 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss~~~~~------------ 145 (258)
T PRK12429 79 FGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMASVHGLV------------ 145 (258)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcchhhcc------------
Confidence 5899999999754321 22334567889999965555554 44554 4999999976542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcC--CCeE-----EEecCCC
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQG--KPIT-----VYRGKNH 304 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~ 304 (421)
...+...|+.+|.+.+.+++.++.+ .|+++++++||.+++|..... +...... .+.. .+ ..
T Consensus 146 ~~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~ 216 (258)
T PRK12429 146 GSAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQ------IPDLAKERGISEEEVLEDVL---LP 216 (258)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhh------hhhhccccCCChHHHHHHHH---hc
Confidence 1245688999999999999988766 489999999999999843210 1111110 0000 00 01
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
....+.+++++|+|++++.++........|+.|++.++
T Consensus 217 ~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 217 LVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred cCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 12345799999999999999876533456889998865
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=197.73 Aligned_cols=238 Identities=16% Similarity=0.133 Sum_probs=171.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
.+|+|+||||+|+||++++++|+++|++|++++|+.+.. .... ......+.++++|++|.+++.++++.+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~----~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATL----ADLA--EKYGDRLLPLALDVTDRAAVFAAVETAVEHF 75 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHH----HHHH--HhccCCeeEEEccCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999854321 1111 112346888999999999998888764
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++++..+++|+.++.++++.+ ++.+. ++||++||...+..
T Consensus 76 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vsS~~~~~~------------ 142 (275)
T PRK08263 76 GRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRS-GHIIQISSIGGISA------------ 142 (275)
T ss_pred CCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEcChhhcCC------------
Confidence 689999999986432 233456788999999988888876 45554 49999999876531
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-------hHHHHHHHHHcCCCeEEEecCCCC
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM-------AYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
......|+.+|++.+.+++.++.+ +|+++++++||.+.++...... ....+...+.. .
T Consensus 143 ~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 210 (275)
T PRK08263 143 FPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAE------------Q 210 (275)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHH------------H
Confidence 234578999999999999998876 6899999999999876432110 01111111111 0
Q ss_pred cceeec-ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhC
Q 043169 306 DLARDF-TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLK 359 (421)
Q Consensus 306 ~~~~~~-i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g 359 (421)
.....+ ++++|+|++++.+++.+ ...++.++.+++..+++.++.+.+.+.-+
T Consensus 211 ~~~~~~~~~p~dva~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (275)
T PRK08263 211 WSERSVDGDPEAAAEALLKLVDAE--NPPLRLFLGSGVLDLAKADYERRLATWEE 263 (275)
T ss_pred HHhccCCCCHHHHHHHHHHHHcCC--CCCeEEEeCchHHHHHHHHHHHHHHHHHH
Confidence 112234 78999999999999876 33445555445567899999998888643
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=194.45 Aligned_cols=209 Identities=17% Similarity=0.212 Sum_probs=159.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc---
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA--- 163 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~--- 163 (421)
.+.+++++|||||+|||.++|+.|+++|++|+++.|+.++.+...++..... ...+.++.+|+++++++.++.+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~--~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT--GVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh--CceEEEEECcCCChhHHHHHHHHHHh
Confidence 3678999999999999999999999999999999998776655544444332 45688999999999998887764
Q ss_pred --cCCcEEEEcccccCch-h---hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 164 --VAFTHVMHLAAQAGVR-Y---AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 164 --~~~d~vi~~Ag~~~~~-~---~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
..+|++|||||..... . .+++.+.++++|+.++..|.+++ .+.+ .++||+++|.+.|-
T Consensus 81 ~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S~ag~~----------- 148 (265)
T COG0300 81 RGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGSAAGLI----------- 148 (265)
T ss_pred cCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEechhhcC-----------
Confidence 2589999999986542 2 23344578999999977666665 4444 34999999988762
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.+....|++||+..-.+...++.| +||+|..|.||.+..+.... ++..... .....-
T Consensus 149 -p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~------------~~~~~~~------~~~~~~ 209 (265)
T COG0300 149 -PTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDA------------KGSDVYL------LSPGEL 209 (265)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccccc------------ccccccc------ccchhh
Confidence 3345688999999999999988877 48999999999998763220 1111100 112345
Q ss_pred cccHHHHHHHHHHhhhcC
Q 043169 311 FTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~ 328 (421)
++..+|+|+..+..++..
T Consensus 210 ~~~~~~va~~~~~~l~~~ 227 (265)
T COG0300 210 VLSPEDVAEAALKALEKG 227 (265)
T ss_pred ccCHHHHHHHHHHHHhcC
Confidence 788999999999999876
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=196.59 Aligned_cols=237 Identities=17% Similarity=0.092 Sum_probs=173.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|+++||||+|+||.++++.|+++|++|++++|+.+..+.. . ......++.++++|+.|.+++.++++.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~----~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAF----A-DALGDARFVPVACDLTDAASLAAALANAAAERG 76 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----H-HHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999864322111 1 1113356889999999999998888764
Q ss_pred CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||...... ...+....+.+|+.++.++++++. +.+. ++||++||...+..
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~------------- 142 (257)
T PRK07074 77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSR-GAVVNIGSVNGMAA------------- 142 (257)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEEcchhhcCC-------------
Confidence 5799999999864321 112234567899999988888873 3443 48999999654310
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC-ChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPD-MAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.....|+.+|.+.+.+++.+++++ |+++++++||.++++..... .....+....... ...++|+
T Consensus 143 ~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 210 (257)
T PRK07074 143 LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKW------------YPLQDFA 210 (257)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhc------------CCCCCCC
Confidence 123469999999999999998764 79999999999998743210 0011222222111 1235799
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHH
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERH 357 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~ 357 (421)
+++|++++++.++........|..+++.++......|+++.+...
T Consensus 211 ~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 255 (257)
T PRK07074 211 TPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTLE 255 (257)
T ss_pred CHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhccc
Confidence 999999999999976544566899999999889999999887653
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-24 Score=196.02 Aligned_cols=232 Identities=15% Similarity=0.109 Sum_probs=162.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+||||.+++++|+++|++|++++|+.+......... .. ....++.++++|++|++++.++++..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~-l~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAE-IE-AAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHH-HH-hcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999998643211111111 11 12346789999999999998888753
Q ss_pred --CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCCCCh
Q 043169 165 --AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTDQPASL 241 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 241 (421)
++|+||||||.... ...++...+++|+.++.++++++.+... .++||++||........ ....+....
T Consensus 82 ~~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~-------~~~~~~~~~ 152 (248)
T PRK07806 82 FGGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT-------VKTMPEYEP 152 (248)
T ss_pred CCCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc-------ccCCccccH
Confidence 57999999986432 2335677899999999999999986522 24899999964321000 011123578
Q ss_pred HHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHH
Q 043169 242 YAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV 318 (421)
Q Consensus 242 Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 318 (421)
|+.||.++|.+++.++.+ .|+++++++||.+-++... .+... ..+-... ........+++++|+|
T Consensus 153 Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~------~~~~~---~~~~~~~---~~~~~~~~~~~~~dva 220 (248)
T PRK07806 153 VARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA------TLLNR---LNPGAIE---ARREAAGKLYTVSEFA 220 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh------hhhcc---CCHHHHH---HHHhhhcccCCHHHHH
Confidence 999999999999999876 4899999999988775211 11100 0000000 0001123689999999
Q ss_pred HHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 319 KGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 319 ~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
++++.++++. ...|++|++++++-
T Consensus 221 ~~~~~l~~~~--~~~g~~~~i~~~~~ 244 (248)
T PRK07806 221 AEVARAVTAP--VPSGHIEYVGGADY 244 (248)
T ss_pred HHHHHHhhcc--ccCccEEEecCccc
Confidence 9999999865 56789999998763
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=197.96 Aligned_cols=230 Identities=14% Similarity=0.075 Sum_probs=165.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|++|||||+|+||.++++.|+++|++|++.+|+.+... .+..... .....++.++.+|++|.+++.++++.+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEED--AQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhh--HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999877533211 1111111 112346788999999999998887764
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|++|||||.... ..+.++++..+++|+.|+.++++++.+.. ..++||++||...+..
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~------------ 192 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQP------------ 192 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccC------------
Confidence 58999999996421 22345567889999999999999886531 1249999999887631
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
......|+.+|.+.+.+++.++.+ +||++++|+||+|++|..............+....+ ...+.
T Consensus 193 ~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~r~~ 260 (294)
T PRK07985 193 SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTP------------MKRAG 260 (294)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccCC------------CCCCC
Confidence 133568999999999999999877 589999999999999843211101111122221111 11356
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.++|+|.+++.++........|.++.+.++.
T Consensus 261 ~pedva~~~~fL~s~~~~~itG~~i~vdgG~ 291 (294)
T PRK07985 261 QPAELAPVYVYLASQESSYVTAEVHGVCGGE 291 (294)
T ss_pred CHHHHHHHHHhhhChhcCCccccEEeeCCCe
Confidence 7899999999999876556778888887764
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-24 Score=196.57 Aligned_cols=232 Identities=17% Similarity=0.108 Sum_probs=163.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|++|||||+|+||+++++.|+++|++|++++|+.+..+...... .....++.++.+|++|.+++.++++.+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVA---TDAGGSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999643221111111 112356889999999999888877654
Q ss_pred CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+|||+||...... ...+.+..+++|+.|+..+++.+ ++.+. ++||++||...+.. .
T Consensus 78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~~~v~~ss~~~~~~------------~ 144 (255)
T TIGR01963 78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGW-GRIINIASAHGLVA------------S 144 (255)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-eEEEEEcchhhcCC------------C
Confidence 4799999999864321 22234567889999988888876 44554 39999999765431 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEE----ecCCCCccee
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVY----RGKNHVDLAR 309 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 309 (421)
+....|+.+|.+.+.+++.++.+ .+++++++|||.+++|... ..+............ .....+...+
T Consensus 145 ~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (255)
T TIGR01963 145 PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVE------KQIADQAKTRGIPEEQVIREVMLPGQPTK 218 (255)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHH------HHHHhhhcccCCCchHHHHHHHHccCccc
Confidence 23578999999999999988765 3899999999999997321 111111111111000 0001133456
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
++++++|+|++++.++........++.|+++++.
T Consensus 219 ~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g~ 252 (255)
T TIGR01963 219 RFVTVDEVAETALFLASDAAAGITGQAIVLDGGW 252 (255)
T ss_pred cCcCHHHHHHHHHHHcCccccCccceEEEEcCcc
Confidence 7999999999999999865334568899998764
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=184.33 Aligned_cols=307 Identities=19% Similarity=0.205 Sum_probs=232.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR-GD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+..+|||||+-|.+|..++..|..+ |- .|++.+..... .. --..--|+..|+.|...+++++-+.+
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp---------~~--V~~~GPyIy~DILD~K~L~eIVVn~R 110 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPP---------AN--VTDVGPYIYLDILDQKSLEEIVVNKR 110 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCc---------hh--hcccCCchhhhhhccccHHHhhcccc
Confidence 34568999999999999999999876 64 56665542210 00 01223477899999999999999999
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+|.+||..+..+. ..+.+.....++|+.|.+|+++.+++++. ++..-|+.+.||......-..+-....|.+.|++|
T Consensus 111 IdWL~HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL--~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVS 187 (366)
T KOG2774|consen 111 IDWLVHFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKL--KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVS 187 (366)
T ss_pred cceeeeHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCe--eEeecccccccCCCCCCCCCCCeeeecCceeechh
Confidence 9999999887542 24566778899999999999999999997 78888999999987654443333334688999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccC---CCCC-CCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYG---PWGR-PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
|..+|.+-+.+.+++|+..-++|.+.++. |++. .+.....+.....+|+ -.++. .++.+...+|.+||-+++
T Consensus 188 KVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk-~tCyl---rpdtrlpmmy~~dc~~~~ 263 (366)
T KOG2774|consen 188 KVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGK-HTCYL---RPDTRLPMMYDTDCMASV 263 (366)
T ss_pred HHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCC-ccccc---CCCccCceeehHHHHHHH
Confidence 99999999999999999999999888775 3333 3344444444444444 45553 567889999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCC--CCCcccCChHHHHHHcCCCcCCCHHH
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNG--DVPFTHANISSAQKEFGYRPTTDLQT 399 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~--~~~~~~~d~~ka~~~lG~~p~~~l~e 399 (421)
+.++..+......++||+++ -..|..|+++.+.+..+.- .+.+.+-.+.. +.--..+|.+.+|++..|+-++.+..
T Consensus 264 ~~~~~a~~~~lkrr~ynvt~-~sftpee~~~~~~~~~p~~-~i~y~~~srq~iad~wp~~~dds~ar~~wh~~h~~~l~~ 341 (366)
T KOG2774|consen 264 IQLLAADSQSLKRRTYNVTG-FSFTPEEIADAIRRVMPGF-EIDYDICTRQSIADSWPMSLDDSEARTEWHEKHSLHLLS 341 (366)
T ss_pred HHHHhCCHHHhhhheeeece-eccCHHHHHHHHHhhCCCc-eeecccchhhhhhhhcccccCchhHhhHHHHhhhhhHHH
Confidence 99999886566789999986 6699999999999988631 11122211111 12223578899999999999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 043169 400 GLKKFVRWYLSYYGY 414 (421)
Q Consensus 400 ~l~~~~~~~~~~~~~ 414 (421)
.+..++.-.+++++.
T Consensus 342 ~i~~~i~~~~~n~~~ 356 (366)
T KOG2774|consen 342 IISTVVAVHKSNLKL 356 (366)
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999988888764
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=199.85 Aligned_cols=237 Identities=14% Similarity=0.091 Sum_probs=164.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|+||||||+|+||.+++++|+++|++|++++|+.+............ ....++.++.+|++|.+++.++++++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAE-YGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-cCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999998654322222111111 11246889999999999998888764
Q ss_pred CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEcccc-ccCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSS-VYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~-v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++++..+++|+.|+.++++++.+ .+..++||++||.. .++
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~------------- 147 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVG------------- 147 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccC-------------
Confidence 689999999976432 12234567789999998888887643 34234999999964 332
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHc--CCCeEEEecCCCCcceee
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ--GKPITVYRGKNHVDLARD 310 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 310 (421)
......|+.||++.+.+++.++.+ +|+++++++||.++++.... ..++.+...... ++....+ .++.....
T Consensus 148 ~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 223 (259)
T PRK12384 148 SKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQ-SLLPQYAKKLGIKPDEVEQYY---IDKVPLKR 223 (259)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhh-hhhHHHHHhcCCChHHHHHHH---HHhCcccC
Confidence 123567999999999999888754 68999999999988764322 112222111100 0000000 11233456
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+++++|++.+++.++........|++|++.+++.
T Consensus 224 ~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 224 GCDYQDVLNMLLFYASPKASYCTGQSINVTGGQV 257 (259)
T ss_pred CCCHHHHHHHHHHHcCcccccccCceEEEcCCEE
Confidence 8899999999999887654446789999998763
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=197.13 Aligned_cols=234 Identities=15% Similarity=0.108 Sum_probs=165.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+++||||+|+||++++++|+++|++|++++|+.+.. ...........++.++++|++|.+++.++++.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 90 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLG----QNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVD 90 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999854321 111111112346889999999999999888754
Q ss_pred ---CCcEEEEcccccCch------hhccCCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccc-cCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR------YAMQNPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSV-YGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v-~g~~~~~~~~e 231 (421)
++|+||||||..... ...++++.++++|+.|+.++++++.+.. ..++||++||... ++
T Consensus 91 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~--------- 161 (280)
T PLN02253 91 KFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIG--------- 161 (280)
T ss_pred HhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhccc---------
Confidence 689999999975321 1234567889999999999988775321 1248999988654 32
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC---C-ChHHHHHHHH----HcCCCeEEEe
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRP---D-MAYFSFTRNI----LQGKPITVYR 300 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~---~-~~~~~~~~~~----~~~~~~~~~~ 300 (421)
......|+.||.+.|.+++.++.+. |+++++++||.+.++.... . ......+..+ ..+.+
T Consensus 162 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 232 (280)
T PLN02253 162 ----GLGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNAN----- 232 (280)
T ss_pred ----CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCC-----
Confidence 1234579999999999999998874 8999999999998763211 1 0001111111 11111
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHH
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVP 348 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~ 348 (421)
.....++++|+|++++.++........|..+++.++...+..
T Consensus 233 ------l~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG~~~~~~ 274 (280)
T PLN02253 233 ------LKGVELTVDDVANAVLFLASDEARYISGLNLMIDGGFTCTNH 274 (280)
T ss_pred ------CcCCCCCHHHHHHHHHhhcCcccccccCcEEEECCchhhccc
Confidence 012247899999999999876655667899999877544433
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=190.88 Aligned_cols=226 Identities=15% Similarity=0.151 Sum_probs=165.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+++||||+|+||++++++|+++|++|++++|...+..+..+...... ....++.++.+|++|.+++.++++..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 567999999999999999999999999999998875443333322222111 12356889999999999998888653
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH-----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK-----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~-----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||.... ....+++...+++|+.++.++++++. +.+. ++||++||...+..
T Consensus 84 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~iv~~sS~~~~~~--------- 153 (249)
T PRK12827 84 EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRG-GRIVNIASVAGVRG--------- 153 (249)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCC-eEEEEECCchhcCC---------
Confidence 57999999998652 12233456789999999999999987 3443 48999999776531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
..+...|+.+|.+.+.+++.++.+ .|+++++++||.+.++........ ..+.+..+. .
T Consensus 154 ---~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~----~~~~~~~~~------------~ 214 (249)
T PRK12827 154 ---NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT----EHLLNPVPV------------Q 214 (249)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH----HHHHhhCCC------------c
Confidence 234678999999999999998876 389999999999999854432111 122222211 1
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.+.+++|+|++++.++........|+.+++.++
T Consensus 215 ~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~g 247 (249)
T PRK12827 215 RLGEPDEVAALVAFLVSDAASYVTGQVIPVDGG 247 (249)
T ss_pred CCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 245789999999998876544556888888765
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-24 Score=196.52 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=164.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+|+||||+|+||++++++|+++|++|++++|+.+..+....... ....++.++.+|++|.+++.++++.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEID---DLGRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---HhCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996532221111111 12356889999999999998888764
Q ss_pred --CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcC--CCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSAN--PQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||.... ....++++..+++|+.++..+++++.+.. ..++||++||...+. +
T Consensus 80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~------------~ 147 (258)
T PRK07890 80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH------------S 147 (258)
T ss_pred cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc------------C
Confidence 68999999997532 12334556789999999999999986421 123899999986542 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC---------ChHHHHHHHHHcCCCeEEEecCC
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD---------MAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
..+...|+.+|.+.+.+++.++.+ .|+++++++||.+++|..... .....+...+.+.
T Consensus 148 ~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 217 (258)
T PRK07890 148 QPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN---------- 217 (258)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc----------
Confidence 235678999999999999999876 489999999999999842210 0001111111111
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.....+.+++|+|++++.+++.......|+++.+.++.
T Consensus 218 --~~~~~~~~~~dva~a~~~l~~~~~~~~~G~~i~~~gg~ 255 (258)
T PRK07890 218 --SDLKRLPTDDEVASAVLFLASDLARAITGQTLDVNCGE 255 (258)
T ss_pred --CCccccCCHHHHHHHHHHHcCHhhhCccCcEEEeCCcc
Confidence 11224678999999999988764334567777766553
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=193.37 Aligned_cols=230 Identities=13% Similarity=0.065 Sum_probs=162.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL-DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+.+|+++||||+|+||++++++|+++|++|+++ .|+.+..++..... .....++.++.+|++|++++.++++++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEI---EALGRKALAVKANVGDVEKIKEMFAQIDE 78 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH---HhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999998874 55432211111111 112356889999999999999988865
Q ss_pred ---CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||...... ..++....+++|+.++.++++++.+.. ..++||++||...+.
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------ 146 (250)
T PRK08063 79 EFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR------------ 146 (250)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc------------
Confidence 6899999999754321 122334578899999999988875422 124999999976542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+..+...|+.+|.+.+.+++.++.+ .|+++++++||.+.++..........+........+ ...+
T Consensus 147 ~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~ 214 (250)
T PRK08063 147 YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKTP------------AGRM 214 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCCC------------CCCC
Confidence 2235678999999999999998866 589999999999987642210000112222211111 1236
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
++++|+|++++.++..+.....|+.+++.++..
T Consensus 215 ~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 215 VEPEDVANAVLFLCSPEADMIRGQTIIVDGGRS 247 (250)
T ss_pred cCHHHHHHHHHHHcCchhcCccCCEEEECCCee
Confidence 889999999999998764456789999887654
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=197.85 Aligned_cols=254 Identities=15% Similarity=0.089 Sum_probs=175.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc----cC-C
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA----VA-F 166 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~----~~-~ 166 (421)
+|+||||||+||++++++|+++|++|++++|+.++.. ..++..+.+|+.|++++.++++. .. .
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~------------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA------------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc------------CCCCccccccCCCHHHHHHHHhcccCcCCce
Confidence 4899999999999999999999999999999765321 24677788999999999999942 12 4
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK 246 (421)
|.|+|+++... + ......+++++|++.|++ |||++||..++.. . ..+
T Consensus 69 d~v~~~~~~~~------~-------~~~~~~~~i~aa~~~gv~-~~V~~Ss~~~~~~-------------~------~~~ 115 (285)
T TIGR03649 69 SAVYLVAPPIP------D-------LAPPMIKFIDFARSKGVR-RFVLLSASIIEKG-------------G------PAM 115 (285)
T ss_pred eEEEEeCCCCC------C-------hhHHHHHHHHHHHHcCCC-EEEEeeccccCCC-------------C------chH
Confidence 99999986421 0 123456899999999976 9999999765310 0 012
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
...|.++++ ..|++++++||+++++..... .+...+.....+.. +.++..++|+|++|+|++++.++.
T Consensus 116 ~~~~~~l~~---~~gi~~tilRp~~f~~~~~~~-----~~~~~~~~~~~~~~----~~g~~~~~~v~~~Dva~~~~~~l~ 183 (285)
T TIGR03649 116 GQVHAHLDS---LGGVEYTVLRPTWFMENFSEE-----FHVEAIRKENKIYS----ATGDGKIPFVSADDIARVAYRALT 183 (285)
T ss_pred HHHHHHHHh---ccCCCEEEEeccHHhhhhccc-----ccccccccCCeEEe----cCCCCccCcccHHHHHHHHHHHhc
Confidence 223333332 148999999999988642111 11122223333322 246778999999999999999998
Q ss_pred cCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCC-------CCCCC----------------cccCChH
Q 043169 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG-------NGDVP----------------FTHANIS 383 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~-------~~~~~----------------~~~~d~~ 383 (421)
.+ ...++.|++++++.+|+.|+++.+.+.+|++.....++... .+-.. .....++
T Consensus 184 ~~--~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~ 261 (285)
T TIGR03649 184 DK--VAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPEDLARMLASLDTAVKNGAEVRLND 261 (285)
T ss_pred CC--CcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCccccccc
Confidence 76 34578999999999999999999999999976544433110 00000 0001245
Q ss_pred HHHHHcCCCcCCCHHHHHHHHH
Q 043169 384 SAQKEFGYRPTTDLQTGLKKFV 405 (421)
Q Consensus 384 ka~~~lG~~p~~~l~e~l~~~~ 405 (421)
...+.+|..|+ +++|-+++..
T Consensus 262 ~~~~~~G~~p~-~~~~~~~~~~ 282 (285)
T TIGR03649 262 VVKAVTGSKPR-GFRDFAESNK 282 (285)
T ss_pred hHHHHhCcCCc-cHHHHHHHhh
Confidence 55677898877 7888777654
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=191.50 Aligned_cols=228 Identities=14% Similarity=0.106 Sum_probs=161.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL-DNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++++++||||+|+||++++++|+++|++|+++ .|+.+. ........ .....+.++.+|++|.+++.++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~ 78 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQA----ADETIREIESNGGKAFLIEADLNSIDGVKKLVEQL 78 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH----HHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999876 453321 11111111 12346889999999999998888753
Q ss_pred -----------CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCC
Q 043169 165 -----------AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 165 -----------~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~ 228 (421)
++|+||||||...... .....+..+++|+.++.++++++.+.- ..++||++||..++.
T Consensus 79 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~------ 152 (254)
T PRK12746 79 KNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL------ 152 (254)
T ss_pred HHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC------
Confidence 5799999999754321 122235678899999999999887531 123899999987763
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.++...|+.||.+.+.+++.++.+ .|+++++++||.+++|-...-.....+. ......
T Consensus 153 ------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~-~~~~~~----------- 214 (254)
T PRK12746 153 ------GFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIR-NFATNS----------- 214 (254)
T ss_pred ------CCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHH-HHHHhc-----------
Confidence 2245678999999999999988875 4799999999999987432100001111 111111
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.....+++++|+|+++..++........|++|++.++
T Consensus 215 ~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 215 SVFGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred CCcCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 1123467899999999988876543456889999865
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=193.01 Aligned_cols=227 Identities=14% Similarity=0.065 Sum_probs=164.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||.++++.|+++|++|++++|+.+..+.... ......++.++++|++|.+++.++++++
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAA----EILAGGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----HHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999997543222111 1111356889999999999999988765
Q ss_pred --CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.++..+++.+.+ .+. ++||++||...+.
T Consensus 79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~----------- 146 (251)
T PRK07231 79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGG-GAIVNVASTAGLR----------- 146 (251)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEEcChhhcC-----------
Confidence 689999999975321 12344567899999998777777653 443 4999999987764
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCh--HHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMA--YFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+..+...|+.+|.+.+.+++.+++++ |+++++++||.+.++....... .......+.... ..
T Consensus 147 -~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~------------~~ 213 (251)
T PRK07231 147 -PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATI------------PL 213 (251)
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCC------------CC
Confidence 22456789999999999999988763 8999999999997763221000 001111111111 12
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..+++++|+|.+++.++........|..+.+.++.
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~ 248 (251)
T PRK07231 214 GRLGTPEDIANAALFLASDEASWITGVTLVVDGGR 248 (251)
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCCeEEECCCc
Confidence 34789999999999999765444567778887654
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=193.78 Aligned_cols=230 Identities=14% Similarity=0.112 Sum_probs=162.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+++||||+|+||.+++++|+++|++|++++|+.+..+....+.. ....++.++.+|++|.+++.++++++
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIR---AEGGEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999997543322221111 12346889999999999999888764
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||.... ....++.+..+++|+.++..+.+++ ++.+. ++||++||...+..
T Consensus 80 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~-~~iv~~sS~~~~~~--------- 149 (254)
T PRK07478 80 RFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGG-GSLIFTSTFVGHTA--------- 149 (254)
T ss_pred hcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEechHhhcc---------
Confidence 68999999997532 1223445678999999877776654 44443 38999999765421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
..+....|+.||.+.+.+++.++++. |+++++|+||.+-.+..............+....+ ..
T Consensus 150 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 215 (254)
T PRK07478 150 --GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHA------------LK 215 (254)
T ss_pred --CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcCC------------CC
Confidence 12346789999999999999998774 79999999999987632110000111111111111 11
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+..++|+|++++.++........|.++.+.++.
T Consensus 216 ~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~ 249 (254)
T PRK07478 216 RMAQPEEIAQAALFLASDAASFVTGTALLVDGGV 249 (254)
T ss_pred CCcCHHHHHHHHHHHcCchhcCCCCCeEEeCCch
Confidence 2567899999999998766556678888886553
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-24 Score=195.99 Aligned_cols=227 Identities=17% Similarity=0.157 Sum_probs=162.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...... .......++.++++|++|+++++++++.+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVA----AAIAAGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHH----HHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998653222211 11112456889999999999999988764
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ...++++..+++|+.++.++.+.+ ++.+. ++||++||...+.
T Consensus 79 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~sS~~~~~------------ 145 (252)
T PRK06138 79 WGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGG-GSIVNTASQLALA------------ 145 (252)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCC-eEEEEECChhhcc------------
Confidence 689999999975432 123344567999999987777665 44553 3999999975432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC---ChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPD---MAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.......|+.+|.+.+.+++.++++. |+++++++||.++++..... ...+.......... ...
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 214 (252)
T PRK06138 146 GGRGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRAR-----------HPM 214 (252)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhc-----------CCC
Confidence 11345789999999999999998775 89999999999998843210 00001111111110 111
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
..+++++|+|++++.++........|..+.+.++
T Consensus 215 ~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 248 (252)
T PRK06138 215 NRFGTAEEVAQAALFLASDESSFATGTTLVVDGG 248 (252)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence 2378899999999999988755556778877654
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-23 Score=231.29 Aligned_cols=258 Identities=16% Similarity=0.186 Sum_probs=183.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC----CcEEEEeCCCCCCChhHHHHHHHh--------hcCCceEEEEcccCC---
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG----DGVVGLDNFNNYYDPSLKKARKAL--------LNNHGVFVIEGDIND--- 153 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~v~~~~~Dl~d--- 153 (421)
..++|+||||+||||.++++.|++++ ++|+++.|..+..+. ........ ....++.++.+|+++
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~l 1048 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAG-LERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKF 1048 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHH-HHHHHHHHHHhCCCchhhhcceEEEeccCCCccC
Confidence 46899999999999999999999987 789999996543222 11111110 012368999999974
Q ss_pred ---HHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCC-----
Q 043169 154 ---AKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNE----- 225 (421)
Q Consensus 154 ---~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~----- 225 (421)
.+...++...+ |+|||||+.... ..........|+.|+.+++++|++.+.+ +|+|+||.++|+...
T Consensus 1049 gl~~~~~~~l~~~~--d~iiH~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~vSS~~v~~~~~~~~~~ 1122 (1389)
T TIGR03443 1049 GLSDEKWSDLTNEV--DVIIHNGALVHW---VYPYSKLRDANVIGTINVLNLCAEGKAK-QFSFVSSTSALDTEYYVNLS 1122 (1389)
T ss_pred CcCHHHHHHHHhcC--CEEEECCcEecC---ccCHHHHHHhHHHHHHHHHHHHHhCCCc-eEEEEeCeeecCcccccchh
Confidence 45666666655 999999997642 1233345568999999999999988765 999999999986421
Q ss_pred -------CCCCCCCCC----CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC----hHHHHHHHH
Q 043169 226 -------NVPFSEADR----TDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDM----AYFSFTRNI 290 (421)
Q Consensus 226 -------~~~~~e~~~----~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~----~~~~~~~~~ 290 (421)
...+.|+.. ...+.+.|+.||+.+|.++..+.+. |++++++|||+|||++..... .+..++...
T Consensus 1123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~ 1201 (1389)
T TIGR03443 1123 DELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKR-GLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGC 1201 (1389)
T ss_pred hhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhC-CCCEEEECCCccccCCCcCCCCchhHHHHHHHHH
Confidence 112333321 1123467999999999999987764 999999999999999654332 233333333
Q ss_pred HcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCc
Q 043169 291 LQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVK 361 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~ 361 (421)
..-. .+ .+....++|++|+|+|++++.++..+.....+.+||++++..+++.++++.+.+. |.+
T Consensus 1202 ~~~~---~~---p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~ 1265 (1389)
T TIGR03443 1202 IQLG---LI---PNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY-GYD 1265 (1389)
T ss_pred HHhC---Cc---CCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh-CCC
Confidence 2211 11 2345578999999999999999876522234578999998889999999999765 443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=194.93 Aligned_cols=230 Identities=13% Similarity=0.110 Sum_probs=168.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|++|||||+|+||.+++++|+++|++|++++|+.+.......... .....++.++.+|++|.+++.++++.+
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRV--EKEGVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH--HhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999986532211111111 112346889999999999999888764
Q ss_pred ---CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...+++...+++|+.++.++++++.+.- ..++||++||...|..
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~------------ 188 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEG------------ 188 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCC------------
Confidence 689999999975321 1223456789999999999999986531 1248999999887642
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
......|+.+|.+.+.+++.++.++ ||++++|+||.++++...... .......+.+. .....+.
T Consensus 189 ~~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~-~~~~~~~~~~~------------~~~~~~~ 255 (290)
T PRK06701 189 NETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDF-DEEKVSQFGSN------------TPMQRPG 255 (290)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCccccccc-CHHHHHHHHhc------------CCcCCCc
Confidence 1234679999999999999999874 899999999999987432211 11112222111 1233478
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+++|+|++++.++........|.++++.++.
T Consensus 256 ~~~dva~~~~~ll~~~~~~~~G~~i~idgg~ 286 (290)
T PRK06701 256 QPEELAPAYVFLASPDSSYITGQMLHVNGGV 286 (290)
T ss_pred CHHHHHHHHHHHcCcccCCccCcEEEeCCCc
Confidence 8999999999999876555678899988764
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-23 Score=189.58 Aligned_cols=226 Identities=14% Similarity=0.130 Sum_probs=162.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+|+||||+|+||.+++++|+++|++|++++|+.. ........ ....++.++++|++|.+++.++++.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~---~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP---SETQQQVE--ALGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH---HHHHHHHH--hcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998531 11111111 12346889999999999999888754
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ...++++..+++|+.++.++++++.+ .+..++||++||...+..
T Consensus 78 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~----------- 146 (248)
T TIGR01832 78 FGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQG----------- 146 (248)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccC-----------
Confidence 689999999986431 12334567899999999999988753 332349999999877642
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
......|+.+|.+.+.+++.++++. |+++++++||.|.++....-.........+.+.. ....+
T Consensus 147 -~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~------------~~~~~ 213 (248)
T TIGR01832 147 -GIRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILERI------------PAGRW 213 (248)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhcC------------CCCCC
Confidence 1234579999999999999999884 8999999999998873221000001111111111 12357
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+.++|+|++++.++........|.++.+.++
T Consensus 214 ~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 244 (248)
T TIGR01832 214 GTPDDIGGPAVFLASSASDYVNGYTLAVDGG 244 (248)
T ss_pred cCHHHHHHHHHHHcCccccCcCCcEEEeCCC
Confidence 8899999999999986544556777776554
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=190.64 Aligned_cols=227 Identities=14% Similarity=0.124 Sum_probs=162.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+++||||+++||.+++++|+++|++|++++|+.. +...... .....++.++.+|++|.+++.++++.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~---~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA---PETQAQV--EALGRKFHFITADLIQQKDIDSIVSQAVE 79 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH---HHHHHHH--HHcCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999887431 1111111 112356889999999999999988764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||..... ...++++..+++|+.++..+++++.+ .+..++||++||...+..
T Consensus 80 ~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~---------- 149 (251)
T PRK12481 80 VMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQG---------- 149 (251)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCC----------
Confidence 689999999985431 23455678899999998888887643 332349999999876531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
......|+.||.+.+.+++.++.+ +|+++++|+||.+-.+..............+....+ ...
T Consensus 150 --~~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p------------~~~ 215 (251)
T PRK12481 150 --GIRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERIP------------ASR 215 (251)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcCC------------CCC
Confidence 123467999999999999998876 589999999999977632110000111111222111 112
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+..++|+|.+++.++........|.++.+.++
T Consensus 216 ~~~peeva~~~~~L~s~~~~~~~G~~i~vdgg 247 (251)
T PRK12481 216 WGTPDDLAGPAIFLSSSASDYVTGYTLAVDGG 247 (251)
T ss_pred CcCHHHHHHHHHHHhCccccCcCCceEEECCC
Confidence 56789999999999986555677888887654
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=194.94 Aligned_cols=224 Identities=13% Similarity=0.080 Sum_probs=158.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||.+++++|+++|++|++++|+.+........ ......++.++.+|++|.+++.++++.+
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDK---IRADGGEAVAFPLDVTDPDSVKSFVAQAEEA 84 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---HHhcCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999864321111111 1112246888999999999999888764
Q ss_pred --CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||...... ..++++..+++|+.++.++++.+.+ .+ .++||++||...+..
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~-~g~iv~isS~~~~~~----------- 152 (274)
T PRK07775 85 LGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERR-RGDLIFVGSDVALRQ----------- 152 (274)
T ss_pred cCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CceEEEECChHhcCC-----------
Confidence 5799999999754321 1233456789999999999888743 33 238999999877641
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC--CChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRP--DMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
.++...|+.+|.+.|.+++.++++. |++++++|||.+.++.... ......++....... .....
T Consensus 153 -~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 221 (274)
T PRK07775 153 -RPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWG----------QARHD 221 (274)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhc----------ccccc
Confidence 1345689999999999999998764 8999999999886652211 111112222111110 11235
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEec
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLG 340 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~ 340 (421)
.++|++|+|++++.+++.+ ..+.+||+.
T Consensus 222 ~~~~~~dva~a~~~~~~~~---~~~~~~~~~ 249 (274)
T PRK07775 222 YFLRASDLARAITFVAETP---RGAHVVNME 249 (274)
T ss_pred cccCHHHHHHHHHHHhcCC---CCCCeeEEe
Confidence 6899999999999999865 235677765
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=193.29 Aligned_cols=230 Identities=14% Similarity=0.089 Sum_probs=164.0
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++..+|++|||||+|+||+++++.|+++|++|++++++.... ....... .....++.++.+|++|.+++.++++++
T Consensus 5 ~~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (258)
T PRK09134 5 SMAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDE---AEALAAEIRALGRRAVALQADLADEAEVRALVARA 81 (258)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHH---HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 346789999999999999999999999999999887743211 1111111 112356889999999999999988764
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||..... ...++++.++++|+.|+.++++++.+.. ..+++|+++|...+.
T Consensus 82 ~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~---------- 151 (258)
T PRK09134 82 SAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN---------- 151 (258)
T ss_pred HHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC----------
Confidence 579999999975431 2234456789999999999999876432 234899998865542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.+....|+.||.+.+.+++.++++. ++++++++||.+..+... ....+. ......+ . ..
T Consensus 152 --~~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~---~~~~~~-~~~~~~~--~----------~~ 213 (258)
T PRK09134 152 --LNPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ---SPEDFA-RQHAATP--L----------GR 213 (258)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc---ChHHHH-HHHhcCC--C----------CC
Confidence 11234679999999999999998875 499999999998765321 111222 1222111 0 12
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHH
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVP 348 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~ 348 (421)
..+++|+|++++.+++.+ ...|+.|++.++..+++.
T Consensus 214 ~~~~~d~a~~~~~~~~~~--~~~g~~~~i~gg~~~~~~ 249 (258)
T PRK09134 214 GSTPEEIAAAVRYLLDAP--SVTGQMIAVDGGQHLAWL 249 (258)
T ss_pred CcCHHHHHHHHHHHhcCC--CcCCCEEEECCCeecccc
Confidence 467899999999999865 567889999887655543
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-24 Score=194.30 Aligned_cols=174 Identities=24% Similarity=0.239 Sum_probs=137.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
...+|+|+|||||+|||.++|.+|+++|.+++.+.|+..+.+...++.+...... ++.++++|++|.+++.++++..
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999998877766655555444333 7999999999999999998654
Q ss_pred ---CCcEEEEcccccCchhh----ccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRYA----MQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||+...... ..+....+++|++|+..+.+++ ++.+ .++||.+||.+.+-
T Consensus 88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~----------- 155 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKM----------- 155 (282)
T ss_pred hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccccc-----------
Confidence 78999999999753221 2234468999999977777766 4555 45999999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---C--CcEEEEEeccccCC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---G--LSITGLRFFTVYGP 275 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g--i~~~~vrp~~v~G~ 275 (421)
+.+....|++||.+.+.+...++.+. + +.+ +|.||.|-..
T Consensus 156 -~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te 200 (282)
T KOG1205|consen 156 -PLPFRSIYSASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETE 200 (282)
T ss_pred -CCCcccccchHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeec
Confidence 22334589999999999999999985 2 333 6899988664
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=189.59 Aligned_cols=228 Identities=18% Similarity=0.113 Sum_probs=162.5
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.+++++|+|+||||+|+||+++++.|+++|++|++++|+.++.+ ... .. ....+.++++|++|.+++.+++++.
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~----~~~-~~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGS----KVA-KA-LGENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHH----HHH-HH-cCCceEEEEccCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999988542111 111 11 1346889999999999987777654
Q ss_pred -----CCcEEEEcccccCch------hhccCCchhhhhhHHHHHHHHHHHHhc--CCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR------YAMQNPHSYVHSNIAGLVTLLEACKSA--NPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~l~~~~~~~--~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||..... ...++++..+++|+.++.++++++.+. ...++||++||...+.
T Consensus 79 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~--------- 149 (255)
T PRK05717 79 LGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQ--------- 149 (255)
T ss_pred HHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcC---------
Confidence 589999999986431 123345678999999999999998632 1124899999976542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
..+....|+.+|.+.+.+++.+++++ ++++++++||.+.++....... ..+.. ..... . ...
T Consensus 150 ---~~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~-~~~~~-~~~~~---~--------~~~ 213 (255)
T PRK05717 150 ---SEPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRA-EPLSE-ADHAQ---H--------PAG 213 (255)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccc-hHHHH-HHhhc---C--------CCC
Confidence 11235679999999999999998885 5999999999999874321110 11111 11111 0 011
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+.+++|+|.+++.++........|.++.+.++.
T Consensus 214 ~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg~ 247 (255)
T PRK05717 214 RVGTVEDVAAMVAWLLSRQAGFVTGQEFVVDGGM 247 (255)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCcEEEECCCc
Confidence 3678999999999888765444567888886553
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=191.36 Aligned_cols=231 Identities=13% Similarity=0.036 Sum_probs=163.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++++||||||+|+||++++++|+++|++|++.+|+...... ...........++.++.+|+++++++.+++++.
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMN--ETLKMVKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHH--HHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999887764321111 111111112245778999999999998888764
Q ss_pred ---CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||...... ..+..+..+++|+.++.++++++.+.- ..++||++||...+. +.
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~ 148 (252)
T PRK06077 81 RYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR------------PA 148 (252)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC------------CC
Confidence 6899999999754321 112235678999999999888886431 124899999988763 23
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCh-HHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMA-YFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
.+...|+.+|.+.+.+++.+++++ ++++.+++||.+.++....-.. ........... ......+++
T Consensus 149 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 217 (252)
T PRK06077 149 YGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEK-----------FTLMGKILD 217 (252)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHHh-----------cCcCCCCCC
Confidence 456889999999999999998875 7999999999998863211000 00000001100 011236899
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
++|+|++++.++... ...+++|++.++..
T Consensus 218 ~~dva~~~~~~~~~~--~~~g~~~~i~~g~~ 246 (252)
T PRK06077 218 PEEVAEFVAAILKIE--SITGQVFVLDSGES 246 (252)
T ss_pred HHHHHHHHHHHhCcc--ccCCCeEEecCCee
Confidence 999999999999755 45688999998753
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=196.25 Aligned_cols=232 Identities=16% Similarity=0.147 Sum_probs=161.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
++|++|||||+|+||+++++.|+++|++|++++|+.+..+....... ......++.++.+|++|++++.+ ++++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQAT-QLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH-hcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 56889999999999999999999999999999986543222211111 11113578999999999999887 5543
Q ss_pred -CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||...... ..++.+..+++|+.|+.++++.+ ++.+. ++||++||...+. .
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vsS~~~~~------------~ 146 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINISSISGRV------------G 146 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEECcccccC------------C
Confidence 5799999999865321 22344567889999988888885 44554 4999999965431 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-----------ChHHHHHHHHHcCCCeEEEec
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD-----------MAYFSFTRNILQGKPITVYRG 301 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 301 (421)
..+...|+.+|.+.+.+++.++.+ +|+++++++||.++++..... ......+..+.....
T Consensus 147 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 220 (280)
T PRK06914 147 FPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHIN------ 220 (280)
T ss_pred CCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHHh------
Confidence 235678999999999999988743 599999999999988732210 111111111111000
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHH
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVP 348 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~ 348 (421)
.....+++++|+|++++.+++++.. ...|+++++..+++.
T Consensus 221 ----~~~~~~~~~~dva~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 221 ----SGSDTFGNPIDVANLIVEIAESKRP---KLRYPIGKGVKLMIL 260 (280)
T ss_pred ----hhhhccCCHHHHHHHHHHHHcCCCC---CcccccCCchHHHHH
Confidence 1123478899999999999987732 356888876655443
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=190.61 Aligned_cols=223 Identities=16% Similarity=0.096 Sum_probs=164.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+++||||+|+||+++++.|+++|++|++++|+.+. .....++.++++|++|.+++.++++.+
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-----------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 71 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-----------TVDGRPAEFHAADVRDPDQVAALVDAIVE 71 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-----------hhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999995432 112356889999999999999988765
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++++..+++|+.++.++++++.+ .+..++||++||...+.
T Consensus 72 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~----------- 140 (252)
T PRK07856 72 RHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR----------- 140 (252)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC-----------
Confidence 689999999975321 12334567899999999999998754 22224899999986542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+......|+.+|.+.+.+++.++.++ .+++++++||.+.++.......-......+....+ ..-+
T Consensus 141 -~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~ 207 (252)
T PRK07856 141 -PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVP------------LGRL 207 (252)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcCC------------CCCC
Confidence 22346789999999999999998874 39999999999987632110000111111222111 1125
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..++|+|++++.++........|..+.+.++..
T Consensus 208 ~~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~~ 240 (252)
T PRK07856 208 ATPADIAWACLFLASDLASYVSGANLEVHGGGE 240 (252)
T ss_pred cCHHHHHHHHHHHcCcccCCccCCEEEECCCcc
Confidence 678999999999987665567889999987654
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-23 Score=188.98 Aligned_cols=224 Identities=21% Similarity=0.179 Sum_probs=163.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-CC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-AF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 166 (421)
+++|+++||||+|+||.++++.|+++|++|++++|+.+. ..... ...++.++.+|++|.+++.++++.. ++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~----~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAA----LDRLA----GETGCEPLRLDVGDDAAIRAALAAAGAF 78 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHH----HHhCCeEEEecCCCHHHHHHHHHHhCCC
Confidence 678999999999999999999999999999999985421 11111 1124678899999999999988764 47
Q ss_pred cEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 167 THVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 167 d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
|+||||||..... ...++++..+++|+.++.++++++.+. +..++||++||...+.. ...
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~ 146 (245)
T PRK07060 79 DGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVG------------LPD 146 (245)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCC------------CCC
Confidence 9999999975421 123345667889999999999888543 22248999999876531 234
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
...|+.+|.+.+.+++.++.+ .|+++++++||.++++..............+.... ....+++++
T Consensus 147 ~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 214 (245)
T PRK07060 147 HLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAAI------------PLGRFAEVD 214 (245)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhcC------------CCCCCCCHH
Confidence 578999999999999998876 48999999999999885321110011111111111 123488999
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
|+|++++.++..+.....|+.+++.++.
T Consensus 215 d~a~~~~~l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK07060 215 DVAAPILFLLSDAASMVSGVSLPVDGGY 242 (245)
T ss_pred HHHHHHHHHcCcccCCccCcEEeECCCc
Confidence 9999999999876556678999987653
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-23 Score=190.37 Aligned_cols=236 Identities=18% Similarity=0.121 Sum_probs=162.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+|+||++++++|+++|++|++++|+.+.. .... ......++.++.+|++|++++.++++.+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~----~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAAL----AATA-ARLPGAKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHH-HHHhcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999854321 1111 1112226789999999999999888764
Q ss_pred --CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+|||+||.... ....+++...+++|+.++.++++++. +.+..++||++||.....
T Consensus 84 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~----------- 152 (264)
T PRK12829 84 FGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL----------- 152 (264)
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc-----------
Confidence 67999999998622 12234456789999999999888773 333324788888865321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEe-cCCCCccee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR-GKNHVDLAR 309 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 309 (421)
..+....|+.+|.+.+.+++.++.+. +++++++|||+++||..... ....... .+....... .........
T Consensus 153 -~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~ 227 (264)
T PRK12829 153 -GYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRV--IEARAQQ--LGIGLDEMEQEYLEKISLG 227 (264)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHH--hhhhhhc--cCCChhHHHHHHHhcCCCC
Confidence 11345679999999999999988764 89999999999999843210 0000000 000000000 000001123
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.+++++|+|+++..++........|+.|+++++..
T Consensus 228 ~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 228 RMVEPEDIAATALFLASPAARYITGQAISVDGNVE 262 (264)
T ss_pred CCCCHHHHHHHHHHHcCccccCccCcEEEeCCCcc
Confidence 48999999999999886543345688999998753
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=191.36 Aligned_cols=232 Identities=12% Similarity=0.041 Sum_probs=164.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+|+||.+++++|+++|++|++++|+.+..+........ ....++.++.+|++|+++++++++.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKS--ESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--hcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999999999965432222211111 12356889999999999999888764
Q ss_pred -CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|++|||||.... +...++++..+++|+.+...+++++ ++.+. ++||++||...+. +
T Consensus 84 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~-g~Ii~isS~~~~~------------~ 150 (263)
T PRK08339 84 GEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGF-GRIIYSTSVAIKE------------P 150 (263)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEcCccccC------------C
Confidence 58999999997532 1234556778999999876666655 44443 4999999987542 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC---------CChHHHHHHHHHcCCCeEEEecCC
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP---------DMAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
.+....|+.+|.+.+.+++.++.+ +||++++|.||.|.++.... ..........+.+..+
T Consensus 151 ~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------- 222 (263)
T PRK08339 151 IPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPIP-------- 222 (263)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccCC--------
Confidence 234567999999999999999887 48999999999997762110 0000111111111111
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
..-+..++|+|.+++.++........|.++.+.++..++
T Consensus 223 ----~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 223 ----LGRLGEPEEIGYLVAFLASDLGSYINGAMIPVDGGRLNS 261 (263)
T ss_pred ----cccCcCHHHHHHHHHHHhcchhcCccCceEEECCCcccc
Confidence 123567899999999998766556778888887765443
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=188.30 Aligned_cols=231 Identities=17% Similarity=0.165 Sum_probs=159.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-HHHHHHHh-hccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-AKLLAKLF-DAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~-~~~~ 165 (421)
.++|+|+||||+|+||++++++|+++|++|+++.|+.++. ........++.++.+|++| .+.+.+.+ ..
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~-------~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~-- 85 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKA-------KTSLPQDPSLQIVRADVTEGSDKLVEAIGDD-- 85 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHH-------HHhcccCCceEEEEeeCCCCHHHHHHHhhcC--
Confidence 5679999999999999999999999999999999854321 1111112468999999998 46666666 34
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+|+|||++|.... .++...+++|..++.++++++++.+.+ +||++||.++|+...+.+..+......+...|..+
T Consensus 86 ~d~vi~~~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~-~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
T PLN00141 86 SDAVICATGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVT-RFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVA 160 (251)
T ss_pred CCEEEECCCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEEccccccCCCcccccCcchhHHHHHHHHHHH
Confidence 5999999986421 133445688999999999999988865 99999999999754332222111111112334456
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhh
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 325 (421)
|..+|.+++. .|+++++||||+++++... +. ..+. ........+++.+|+|++++.++
T Consensus 161 k~~~e~~l~~----~gi~~~iirpg~~~~~~~~--------------~~-~~~~---~~~~~~~~~i~~~dvA~~~~~~~ 218 (251)
T PLN00141 161 KLQAEKYIRK----SGINYTIVRPGGLTNDPPT--------------GN-IVME---PEDTLYEGSISRDQVAEVAVEAL 218 (251)
T ss_pred HHHHHHHHHh----cCCcEEEEECCCccCCCCC--------------ce-EEEC---CCCccccCcccHHHHHHHHHHHh
Confidence 7777765543 5899999999999986321 11 1111 01112235799999999999999
Q ss_pred hcCCCCCCceEEEecCCC---ccCHHHHHHHHHH
Q 043169 326 DTSAGPAPYRIFNLGNTS---PVTVPKLVNILER 356 (421)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~---~~t~~el~~~l~~ 356 (421)
.++ ...+.++.+.+.. ..++++++..+.+
T Consensus 219 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 219 LCP--ESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred cCh--hhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 876 3456777777632 3788888877654
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=190.52 Aligned_cols=229 Identities=17% Similarity=0.188 Sum_probs=167.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+|+||||+|+||.++++.|+++|++|++++|+.+..+....... ....++.++.+|++|.+++.++++..
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ---QLGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999986432222111111 12346888999999999999887764
Q ss_pred ---CCcEEEEcccccCch---hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR---YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ...++++..+++|+.++.++++++.. .+ .++||++||.....
T Consensus 85 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~------------ 151 (255)
T PRK06113 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAEN------------ 151 (255)
T ss_pred HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC-CcEEEEEecccccC------------
Confidence 689999999975432 12344556799999999999999853 33 23999999976531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+..+...|+.+|.+.+.+++.++++ .||+++++.||.+..+.... ...+.+.....+..+. .-+
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~-~~~~~~~~~~~~~~~~------------~~~ 218 (255)
T PRK06113 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS-VITPEIEQKMLQHTPI------------RRL 218 (255)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccc-ccCHHHHHHHHhcCCC------------CCC
Confidence 2234578999999999999999876 48999999999998764321 1112233333332221 125
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..++|++++++.++........|+++++.++..
T Consensus 219 ~~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg~~ 251 (255)
T PRK06113 219 GQPQDIANAALFLCSPAASWVSGQILTVSGGGV 251 (255)
T ss_pred cCHHHHHHHHHHHcCccccCccCCEEEECCCcc
Confidence 688999999999997654556789999988754
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=191.81 Aligned_cols=233 Identities=14% Similarity=0.107 Sum_probs=160.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+|+||||+|+||+++++.|+++|++|++++|+.+..+........ ......+.++.+|++|++++.+++++.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGK-EFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHh-hcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999865433222222111 112345677899999999999988764
Q ss_pred --CCcEEEEcccccCc-------hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV-------RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~-------~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||.... ....+.....+++|+.++..+++++ ++.+. ++||++||...+..... ...+
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~~~~-~~~~ 158 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGG-GNLVNISSIYGVVAPKF-EIYE 158 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCC-ceEEEEechhhhccccc-hhcc
Confidence 37999999975421 1122334567889998877666655 44454 49999999765432111 1112
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+... .....|+.||.+.+.+++.++++ .|+++++++||.++++.. ..+........+ .
T Consensus 159 ~~~~-~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~------~~~~~~~~~~~~------------~ 219 (256)
T PRK09186 159 GTSM-TSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP------EAFLNAYKKCCN------------G 219 (256)
T ss_pred cccc-CCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC------HHHHHHHHhcCC------------c
Confidence 2222 22347999999999999988876 489999999999886521 122222221111 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
..+++++|+|++++.++.+......|..+.+.++
T Consensus 220 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 253 (256)
T PRK09186 220 KGMLDPDDICGTLVFLLSDQSKYITGQNIIVDDG 253 (256)
T ss_pred cCCCCHHHhhhhHhheeccccccccCceEEecCC
Confidence 2378999999999999986644566888887765
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=190.02 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=151.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
.+|+++||||+|+||++++++|+++|++|++++|+.+.. ... ......++.++.+|++|.+++.++++.+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~----~~l--~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 76 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAAR----ADF--EALHPDRALARLLDVTDFDAIDAVVADAEATF 76 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHH----HHH--HhhcCCCeeEEEccCCCHHHHHHHHHHHHHHh
Confidence 568999999999999999999999999999999954311 111 1112346889999999999999888764
Q ss_pred -CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||...... ..++.+..+++|+.|+.++++++. +.+. ++||++||...+. .
T Consensus 77 ~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~iSS~~~~~------------~ 143 (277)
T PRK06180 77 GPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRR-GHIVNITSMGGLI------------T 143 (277)
T ss_pred CCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC-CEEEEEecccccC------------C
Confidence 5799999999854321 122345679999999999999863 3333 4999999976542 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-----ChHHHH---HHHHHcCCCeEEEecCCC
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD-----MAYFSF---TRNILQGKPITVYRGKNH 304 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~ 304 (421)
.++...|+.+|++.+.+++.++.+ +|+++++++||.+.++..... .....+ ......... .
T Consensus 144 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------ 215 (277)
T PRK06180 144 MPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQARE--A------ 215 (277)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHH--h------
Confidence 245688999999999999998866 589999999999987643211 011111 111100000 0
Q ss_pred CcceeecccHHHHHHHHHHhhhcC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
.....+..++|+|++++.+++.+
T Consensus 216 -~~~~~~~~~~dva~~~~~~l~~~ 238 (277)
T PRK06180 216 -KSGKQPGDPAKAAQAILAAVESD 238 (277)
T ss_pred -hccCCCCCHHHHHHHHHHHHcCC
Confidence 01123567999999999999876
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=189.89 Aligned_cols=227 Identities=15% Similarity=0.119 Sum_probs=163.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
.|+++||||+|+||+++++.|+++|++|++++|+.... ........ ....++.++++|++|.+++.++++.+
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE---LAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAW 78 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhH---HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999864321 11111111 12346899999999999998888765
Q ss_pred -CCcEEEEcccccCch------hhccCCchhhhhhHHHHHHHHHHHHhc----C--C---CCeEEEEccccccCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR------YAMQNPHSYVHSNIAGLVTLLEACKSA----N--P---QPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~l~~~~~~~----~--~---~~riV~~SS~~v~g~~~~~~ 228 (421)
++|+||||||..... .+.++++..+++|+.++.++++++.+. . . .++||++||...+.
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------ 152 (256)
T PRK12745 79 GRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM------ 152 (256)
T ss_pred CCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc------
Confidence 689999999975321 123455678999999999998887432 1 1 24799999977542
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+..+.+.|+.+|.+.+.+++.++.+ +|+++++++||.+.++..... ...+...+..+ ..
T Consensus 153 ------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~--~~~~~~~~~~~-~~--------- 214 (256)
T PRK12745 153 ------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPV--TAKYDALIAKG-LV--------- 214 (256)
T ss_pred ------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCcccccc--chhHHhhhhhc-CC---------
Confidence 1234578999999999999999865 589999999999998743211 11121111111 11
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
....+.+++|+++++..++........|.+|++.++..
T Consensus 215 -~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg~~ 252 (256)
T PRK12745 215 -PMPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGGLS 252 (256)
T ss_pred -CcCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCCee
Confidence 12347799999999999887654456789999987654
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=186.57 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=162.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+++||||+|+||++++++|+++|++|+++.++.. .......... ....++.++.+|++|.+++.++++.+
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK---EAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH---HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999987765332 1111111111 12346889999999999999988874
Q ss_pred ---CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||...... ..++++..+++|+.++.++++++.+ .+. ++||++||...+.
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~----------- 148 (247)
T PRK12935 81 HFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEE-GRIISISSIIGQA----------- 148 (247)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEcchhhcC-----------
Confidence 5899999999864321 2245567899999999999998864 332 4999999975432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
...+...|+.+|.+.+.+++.++.+. |+++++++||.+.++.... ...........+. ..+.
T Consensus 149 -~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~--~~~~~~~~~~~~~------------~~~~ 213 (247)
T PRK12935 149 -GGFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAE--VPEEVRQKIVAKI------------PKKR 213 (247)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhh--ccHHHHHHHHHhC------------CCCC
Confidence 11356789999999999999888764 8999999999998763221 0111111222111 1345
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+.+++|++++++.++... ....|+.||+.++.
T Consensus 214 ~~~~edva~~~~~~~~~~-~~~~g~~~~i~~g~ 245 (247)
T PRK12935 214 FGQADEIAKGVVYLCRDG-AYITGQQLNINGGL 245 (247)
T ss_pred CcCHHHHHHHHHHHcCcc-cCccCCEEEeCCCc
Confidence 899999999999998754 23578999998763
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-23 Score=189.17 Aligned_cols=224 Identities=21% Similarity=0.173 Sum_probs=160.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+|+||||+|+||++++++|+++|++|++++|+.+. ....... ...++.++++|++|.+++.++++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~----~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPAS----LEAARAE--LGESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHH----HHHHHHH--hCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999985321 1111111 1346788999999999888777653
Q ss_pred --CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEcccc-ccCCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSS-VYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~-v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||.... ....++++..+++|+.++.++++++.+.- ..+++|++||.. .|+ .
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~-------------~ 144 (249)
T PRK06500 78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIG-------------M 144 (249)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccC-------------C
Confidence 57999999997542 12334566789999999999999997421 123777777744 443 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC----CCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGR----PDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+....|+.+|.+.|.+++.++.+. |+++++++||.+++|... .......+.+.+.+..++.
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 212 (249)
T PRK06500 145 PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLG------------ 212 (249)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCC------------
Confidence 345789999999999999888764 899999999999987321 1112233333343333221
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
-+..++|+|++++.++........|..+.+.++
T Consensus 213 ~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg 245 (249)
T PRK06500 213 RFGTPEEIAKAVLYLASDESAFIVGSEIIVDGG 245 (249)
T ss_pred CCcCHHHHHHHHHHHcCccccCccCCeEEECCC
Confidence 145789999999998876544455677776654
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=188.28 Aligned_cols=225 Identities=17% Similarity=0.145 Sum_probs=160.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+++||||+|+||.++++.|+++|++|++++++.+ ...+.. ...++.++.+|++|++++.++++.+
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~---~~~~~l-----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE---NEAKEL-----REKGVFTIKCDVGNRDQVKKSKEVVEK 75 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH---HHHHHH-----HhCCCeEEEecCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999998876442 111111 1225889999999999999988765
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ....++++..+++|+.|+..+++.+ ++.+ .++||++||...++.
T Consensus 76 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS~~~~~~---------- 144 (255)
T PRK06463 76 EFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIASNAGIGT---------- 144 (255)
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHHhCCC----------
Confidence 68999999998532 1233456678999999966665544 4344 249999999877631
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC---CChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP---DMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+......|+.||.+.+.+++.++.+ +|+++++++||.+-.+-... ......+...+....+
T Consensus 145 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------ 211 (255)
T PRK06463 145 -AAEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTV------------ 211 (255)
T ss_pred -CCCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCC------------
Confidence 1134567999999999999999876 48999999999987653211 1111111111112111
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+..++|+|++++.++........|..+.+.++.
T Consensus 212 ~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~ 247 (255)
T PRK06463 212 LKTTGKPEDIANIVLFLASDDARYITGQVIVADGGR 247 (255)
T ss_pred cCCCcCHHHHHHHHHHHcChhhcCCCCCEEEECCCe
Confidence 223567899999999999866445678899887765
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-23 Score=189.51 Aligned_cols=229 Identities=12% Similarity=0.089 Sum_probs=164.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||.+++++|+++|++|++++|+.+.......+.. ....++.++.+|++|.+++.++++..
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLR---QEGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH---hcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999986432222111111 11346788999999999999888764
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ....++++..+++|+.++.++++++.+ .+ .++||++||.....
T Consensus 83 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~----------- 150 (254)
T PRK08085 83 DIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQ-AGKIINICSMQSEL----------- 150 (254)
T ss_pred hcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEccchhcc-----------
Confidence 58999999997532 123345667899999998888887754 33 24999999975421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
...+...|+.+|.+.+.+++.++.+ +|+++++|+||.+.++..........+...+....+ ..-
T Consensus 151 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~p------------~~~ 217 (254)
T PRK08085 151 -GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTP------------AAR 217 (254)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcCC------------CCC
Confidence 1234578999999999999999876 489999999999998743211000112222222211 123
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+..++|+|.+++.++........|.+..+.++.
T Consensus 218 ~~~~~~va~~~~~l~~~~~~~i~G~~i~~dgg~ 250 (254)
T PRK08085 218 WGDPQELIGAAVFLSSKASDFVNGHLLFVDGGM 250 (254)
T ss_pred CcCHHHHHHHHHHHhCccccCCcCCEEEECCCe
Confidence 678899999999999876556778888776653
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=189.65 Aligned_cols=227 Identities=13% Similarity=0.054 Sum_probs=163.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+|+||++++++|+++|++|++++|+.+......... .....++.++++|++|.++++++++.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADI---RAKGGNAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH---HhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999998653221111111 112356889999999999999988754
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ....+.+..+++|+.++.++++++. +.+. ++||++||...+..
T Consensus 78 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~iss~~~~~~----------- 145 (250)
T TIGR03206 78 LGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGA-GRIVNIASDAARVG----------- 145 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-eEEEEECchhhccC-----------
Confidence 579999999975321 1222345679999999999888774 4443 48999999877642
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC----CChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRP----DMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
......|+.+|++.+.+++.++++. |+++++++||.++++.... ......+...+....+
T Consensus 146 -~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 212 (250)
T TIGR03206 146 -SSGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIP------------ 212 (250)
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCC------------
Confidence 1345679999999999999988764 8999999999999873211 0000112222222221
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
..-+..++|+|+++..++........|+++++.++
T Consensus 213 ~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 247 (250)
T TIGR03206 213 LGRLGQPDDLPGAILFFSSDDASFITGQVLSVSGG 247 (250)
T ss_pred ccCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCCC
Confidence 11245679999999999887655667899999865
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=188.91 Aligned_cols=221 Identities=13% Similarity=0.080 Sum_probs=160.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||.+++++|+++|++|++++|+... ...+.++++|++|++++.++++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~--------------~~~~~~~~~D~~~~~~i~~~~~~~~~ 68 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS--------------YNDVDYFKVDVSNKEQVIKGIDYVIS 68 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc--------------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999985431 126889999999999999888764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++++..+++|+.|+.++++++.+ .+ .++||++||...+.
T Consensus 69 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~----------- 136 (258)
T PRK06398 69 KYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQD-KGVIINIASVQSFA----------- 136 (258)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeCcchhcc-----------
Confidence 689999999975321 12334557799999999998887743 33 34999999987653
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCC------ChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPD------MAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.++...|+.+|.+.+.+++.++.++ ++++++|+||.+.++-.... .....+.+....-. ..
T Consensus 137 -~~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 206 (258)
T PRK06398 137 -VTRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREWG---------EM 206 (258)
T ss_pred -CCCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhhh---------hc
Confidence 22456789999999999999998875 49999999999977621100 00000000000000 00
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.....+..++|+|++++.++........|.++.+.++.
T Consensus 207 ~~~~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dgg~ 244 (258)
T PRK06398 207 HPMKRVGKPEEVAYVVAFLASDLASFITGECVTVDGGL 244 (258)
T ss_pred CCcCCCcCHHHHHHHHHHHcCcccCCCCCcEEEECCcc
Confidence 11223667999999999998765445678888887664
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=187.21 Aligned_cols=231 Identities=16% Similarity=0.124 Sum_probs=164.2
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC-ChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY-DPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.++++|+++||||+|+||++++++|+++|++|++++|+.+.. +...... .....++.++++|++|++++.++++.+
T Consensus 4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l---~~~~~~~~~~~~D~~~~~~i~~~~~~~ 80 (254)
T PRK06114 4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHI---EAAGRRAIQIAADVTSKADLRAAVART 80 (254)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH---HhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 346899999999999999999999999999999999865321 1111111 112346788999999999999888764
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||..... ...++.+.++++|+.++..+++++. +.+ .++||++||...+...
T Consensus 81 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~------- 152 (254)
T PRK06114 81 EAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENG-GGSIVNIASMSGIIVN------- 152 (254)
T ss_pred HHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CcEEEEECchhhcCCC-------
Confidence 579999999986431 2334566789999999988777653 333 2499999997643211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+......|+.+|++.+.+++.++.+ +|+++++|+||.+.++....... ......+....+ .
T Consensus 153 ---~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~-~~~~~~~~~~~p------------~ 216 (254)
T PRK06114 153 ---RGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEM-VHQTKLFEEQTP------------M 216 (254)
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccc-hHHHHHHHhcCC------------C
Confidence 1112467999999999999999876 48999999999998874321111 111112222111 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|++.+++.++........|+++.+.++.
T Consensus 217 ~r~~~~~dva~~~~~l~s~~~~~~tG~~i~~dgg~ 251 (254)
T PRK06114 217 QRMAKVDEMVGPAVFLLSDAASFCTGVDLLVDGGF 251 (254)
T ss_pred CCCcCHHHHHHHHHHHcCccccCcCCceEEECcCE
Confidence 12567899999999999876566778888887653
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=190.22 Aligned_cols=232 Identities=14% Similarity=0.092 Sum_probs=164.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+++||||+|+||.++++.|+++|++|++++|+.+..++........ ....++.++++|++|.+++.++++.+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARD-VAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-cCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999654322222211110 12356889999999999999888764
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ....++++..+++|+.++.++++++.+ .+ .++||++||...+.
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~----------- 150 (260)
T PRK07063 83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG-RGSIVNIASTHAFK----------- 150 (260)
T ss_pred HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC-CeEEEEECChhhcc-----------
Confidence 68999999997532 123345667899999999888888743 33 24999999986542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
..+...+|+.+|.+.+.+++.++.++ ||++++|+||.+-++-.... ..............+
T Consensus 151 -~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~----------- 218 (260)
T PRK07063 151 -IIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQP----------- 218 (260)
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCC-----------
Confidence 12345689999999999999998774 79999999999977632100 000001111111111
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..-+..++|+|.+++.++........|..+.+.++..
T Consensus 219 -~~r~~~~~~va~~~~fl~s~~~~~itG~~i~vdgg~~ 255 (260)
T PRK07063 219 -MKRIGRPEEVAMTAVFLASDEAPFINATCITIDGGRS 255 (260)
T ss_pred -CCCCCCHHHHHHHHHHHcCccccccCCcEEEECCCee
Confidence 1125578999999999998765567788888876643
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=193.48 Aligned_cols=232 Identities=13% Similarity=0.089 Sum_probs=154.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+|+||||+|+||.+++++|+++|++|++++|+.+..+... .. . .++.++.+|++|.++++++++.+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~----~~-l--~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREAL----AG-I--DGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----HH-h--hhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999643221111 11 1 24889999999999999888753
Q ss_pred --CCcEEEEcccccCch--hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC--CC
Q 043169 165 --AFTHVMHLAAQAGVR--YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA--DR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~--~~ 234 (421)
++|+||||||..... .+.++.+..+++|+.|+.++++.+ ++.+. ++||++||....... ..+++. ..
T Consensus 97 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~-~~iV~vSS~~~~~~~--~~~~~~~~~~ 173 (315)
T PRK06196 97 GRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAG-ARVVALSSAGHRRSP--IRWDDPHFTR 173 (315)
T ss_pred CCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEECCHHhccCC--CCccccCccC
Confidence 589999999976432 223445678999999976666654 44443 499999997643211 111111 11
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+..+...|+.||.+.+.+++.++++ +|+++++|+||.+.+|......................+ ...+
T Consensus 174 ~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 244 (315)
T PRK06196 174 GYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNPI---------DPGF 244 (315)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhhh---------hhhc
Confidence 2234578999999999999998876 489999999999999843211100000000000000000 0024
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEE
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFN 338 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~ 338 (421)
..++|+|.+++.++..+.....++.|.
T Consensus 245 ~~~~~~a~~~~~l~~~~~~~~~~g~~~ 271 (315)
T PRK06196 245 KTPAQGAATQVWAATSPQLAGMGGLYC 271 (315)
T ss_pred CCHhHHHHHHHHHhcCCccCCCCCeEe
Confidence 568999999999887653223344443
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=191.12 Aligned_cols=228 Identities=15% Similarity=0.060 Sum_probs=162.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+++||||+|+||++++++|+++|++|++++|+.+..+. .... ...++.++++|++|.+++.++++.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~----~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAA----VAAS--LGERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHH--hCCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999996532211 1111 1346889999999999999888765
Q ss_pred ---CCcEEEEcccccCc---hhhccCCchhhhhhHHHHHHHHHHHHhc--CCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV---RYAMQNPHSYVHSNIAGLVTLLEACKSA--NPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~---~~~~~~~~~~~~~N~~g~~~l~~~~~~~--~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||.... ....++++..+++|+.++.++++++.+. ...++||++||...+. ..
T Consensus 77 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~ 144 (261)
T PRK08265 77 RFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF------------AQ 144 (261)
T ss_pred HhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc------------CC
Confidence 68999999997532 1233455678999999999888877532 1124999999976431 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-ChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD-MAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.....|+.+|.+.+.+++.++.+ +|+++++|+||.+.++-...- .........+... . ....-+.
T Consensus 145 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~--~---------~p~~r~~ 213 (261)
T PRK08265 145 TGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAP--F---------HLLGRVG 213 (261)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcc--c---------CCCCCcc
Confidence 34567999999999999998876 489999999999877621100 0000000111100 0 0111256
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.++|+|++++.++........|..+.+.++.
T Consensus 214 ~p~dva~~~~~l~s~~~~~~tG~~i~vdgg~ 244 (261)
T PRK08265 214 DPEEVAQVVAFLCSDAASFVTGADYAVDGGY 244 (261)
T ss_pred CHHHHHHHHHHHcCccccCccCcEEEECCCe
Confidence 7899999999999876556778888887763
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=185.41 Aligned_cols=218 Identities=15% Similarity=0.084 Sum_probs=162.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||.++++.|+++|++|++++|+.++..+... .....++.++.+|+.|.+++.++++++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLP-----GVPADALRIGGIDLVDPQAARRAVDEVNR 78 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHH-----HHhhcCceEEEeecCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999996532222111 122346788899999999998888764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+|||+||..... ...+++...+++|+.++.++++++. +.+. ++||++||...++.
T Consensus 79 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~---------- 147 (239)
T PRK12828 79 QFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGG-GRIVNIGAGAALKA---------- 147 (239)
T ss_pred HhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCC-CEEEEECchHhccC----------
Confidence 579999999975321 1223345678899999999888874 3443 49999999887642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..+...|+.+|.+.+.+++.+++. .|+++++++||.++++..... .+ ......
T Consensus 148 --~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~-------------~~---------~~~~~~ 203 (239)
T PRK12828 148 --GPGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRAD-------------MP---------DADFSR 203 (239)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhc-------------CC---------chhhhc
Confidence 134578999999999999888765 489999999999998722110 00 011223
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+++++|+|++++.++........|..+++.+++.
T Consensus 204 ~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g~~~ 237 (239)
T PRK12828 204 WVTPEQIAAVIAFLLSDEAQAITGASIPVDGGVA 237 (239)
T ss_pred CCCHHHHHHHHHHHhCcccccccceEEEecCCEe
Confidence 7999999999999998653345688999887754
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=187.16 Aligned_cols=228 Identities=14% Similarity=0.085 Sum_probs=157.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC-CCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF-NNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+++||||+|+||.+++++|+++|++|++.+++ .+..+....+. ......+.++.+|+++.+++..++++.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI---QSNGGSAFSIGANLESLHGVEALYSSLDN 78 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH---HhcCCceEEEecccCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999887542 22111111111 112345778899999998877666432
Q ss_pred ---------CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCC
Q 043169 165 ---------AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ---------~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||..... ...++++.++++|+.|+..+++++.+.. ..++||++||...+.
T Consensus 79 ~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-------- 150 (252)
T PRK12747 79 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI-------- 150 (252)
T ss_pred HhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc--------
Confidence 589999999975321 1223356788999999999998875432 124999999987642
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+....|+.||++.+.+++.++.++ |+++++|.||.|.++-...... ........+.. ..
T Consensus 151 ----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~-----------~~ 214 (252)
T PRK12747 151 ----SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS-DPMMKQYATTI-----------SA 214 (252)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc-CHHHHHHHHhc-----------Cc
Confidence 12345789999999999999988764 8999999999998873221000 00111111100 01
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
...+.+++|+|++++.++........|..+.+.++
T Consensus 215 ~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~vdgg 249 (252)
T PRK12747 215 FNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGG 249 (252)
T ss_pred ccCCCCHHHHHHHHHHHcCccccCcCCcEEEecCC
Confidence 22367899999999998876544567888888765
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=187.61 Aligned_cols=230 Identities=13% Similarity=0.130 Sum_probs=165.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+++||||+|+||.++++.|+++|++|++++|+.+..+........ .....++.++.+|++|.+++.++++.+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAE-EFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-hCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999964322211111111 112356889999999999998888764
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ....++++..+++|+.++.++++++. +.+. ++||++||...+.
T Consensus 85 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~sS~~~~~----------- 152 (257)
T PRK09242 85 HWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHAS-SAIVNIGSVSGLT----------- 152 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-ceEEEECccccCC-----------
Confidence 68999999997432 22345567789999999999988874 3332 4999999987653
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+..+...|+.+|.+.+.+++.++.+ .|++++.++||.+.+|..........+...+....+.. -
T Consensus 153 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~------------~ 219 (257)
T PRK09242 153 -HVRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMR------------R 219 (257)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCC------------C
Confidence 1234578999999999999998866 48999999999999874332111123333333322211 1
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+...+|++.++..++........|+.+.+.++
T Consensus 220 ~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg 251 (257)
T PRK09242 220 VGEPEEVAAAVAFLCMPAASYITGQCIAVDGG 251 (257)
T ss_pred CcCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 44579999999999876534456788888654
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=187.10 Aligned_cols=227 Identities=15% Similarity=0.067 Sum_probs=162.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+|+||||+|+||++++++|+++|++|++++|+.+. ....++.++++|++|.+++.++++..
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~------------~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD------------DLPEGVEFVAADLTTAEGCAAVARAVLE 73 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh------------hcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999995421 11346889999999999988877654
Q ss_pred ---CCcEEEEcccccCc------hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV------RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||.... ....++++..+++|+.++.++++++ ++.+. ++||++||...+..
T Consensus 74 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~ii~isS~~~~~~-------- 144 (260)
T PRK06523 74 RLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGS-GVIIHVTSIQRRLP-------- 144 (260)
T ss_pred HcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-cEEEEEecccccCC--------
Confidence 68999999996421 1233456678999999988776665 34443 48999999875421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC---------ChHHHHHHHHHcCCCeEEE
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD---------MAYFSFTRNILQGKPITVY 299 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~ 299 (421)
...+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.+|..... .........+.+... .+
T Consensus 145 ---~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 219 (260)
T PRK06523 145 ---LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLG-GI- 219 (260)
T ss_pred ---CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhc-cC-
Confidence 1124678999999999999999876 389999999999998742110 000011111110000 00
Q ss_pred ecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 300 RGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 300 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
...-+..++|+|++++.++........|+.+.+.++...|
T Consensus 220 -------p~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 220 -------PLGRPAEPEEVAELIAFLASDRAASITGTEYVIDGGTVPT 259 (260)
T ss_pred -------ccCCCCCHHHHHHHHHHHhCcccccccCceEEecCCccCC
Confidence 0112557899999999999865456778999998876543
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=187.59 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=163.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+|+||.++++.|+++|++|++++|+.+..+....... ....++.++.+|++|++++.++++++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIG---TSGGKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH---hcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999986543222211111 12346788999999999999888764
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ...++.+..+++|+.++..+++++.+ .+..++||++||....-. .
T Consensus 84 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~----------~ 153 (253)
T PRK05867 84 LGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHII----------N 153 (253)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCC----------C
Confidence 789999999985432 12334567889999999988888743 322248999998653210 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
.......|+.+|.+.+.+++.++.+ +||++++|+||.|-++..... ......+....+ ..-+
T Consensus 154 ~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~---~~~~~~~~~~~~------------~~r~ 218 (253)
T PRK05867 154 VPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY---TEYQPLWEPKIP------------LGRL 218 (253)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc---hHHHHHHHhcCC------------CCCC
Confidence 1123467999999999999999876 489999999999987743211 112222222211 1125
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..++|+|++++.++........|+++.+.++.
T Consensus 219 ~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG~ 250 (253)
T PRK05867 219 GRPEELAGLYLYLASEASSYMTGSDIVIDGGY 250 (253)
T ss_pred cCHHHHHHHHHHHcCcccCCcCCCeEEECCCc
Confidence 67899999999999876566788888887763
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=185.30 Aligned_cols=225 Identities=13% Similarity=0.043 Sum_probs=161.1
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++|+++||||+ ++||.+++++|+++|++|++.+|+. + ..+ . ........+.++++|++|+++++++++.+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~---~~~-~-~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 78 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-R---MKK-S-LQKLVDEEDLLVECDVASDESIERAFATIK 78 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-H---HHH-H-HHhhccCceeEEeCCCCCHHHHHHHHHHHH
Confidence 678999999999 7999999999999999999998852 1 111 1 11122346889999999999999888664
Q ss_pred ----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||.... ....++++..+++|+.++..+++++.+.- ..++||++||.....
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~--------- 149 (252)
T PRK06079 79 ERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER--------- 149 (252)
T ss_pred HHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc---------
Confidence 68999999997532 12334456789999999888888775432 124899999876421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.+....|+.||.+.+.+++.++.+ +||++++|.||.|-++-.........+...+.+..+ .
T Consensus 150 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------~ 214 (252)
T PRK06079 150 ---AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTV------------D 214 (252)
T ss_pred ---cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCc------------c
Confidence 1234578999999999999999877 489999999999987632111001122222222111 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.-+..++|+|++++.++........|.++.+.++
T Consensus 215 ~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 248 (252)
T PRK06079 215 GVGVTIEEVGNTAAFLLSDLSTGVTGDIIYVDKG 248 (252)
T ss_pred cCCCCHHHHHHHHHHHhCcccccccccEEEeCCc
Confidence 1266789999999999987555667888877654
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=188.22 Aligned_cols=220 Identities=18% Similarity=0.147 Sum_probs=163.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||++++++|+++|++|++++|+. . .....++.++++|++|.+++.+++++.
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------L---TQEDYPFATFVLDVSDAAAVAQVCQRLLA 72 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------h---hhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999843 0 112356889999999999999988764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...+++...+++|+.++.++++++.. .+. ++||++||.....
T Consensus 73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~~ss~~~~~----------- 140 (252)
T PRK08220 73 ETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRS-GAIVTVGSNAAHV----------- 140 (252)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CEEEEECCchhcc-----------
Confidence 579999999986432 13345667899999999999988743 332 3899999976532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCh--------HHHHHHHHHcCCCeEEEecC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMA--------YFSFTRNILQGKPITVYRGK 302 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 302 (421)
+..+...|+.+|.+.+.+++.++.+ +|+++++++||.+++|....-.. ..........+
T Consensus 141 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 210 (252)
T PRK08220 141 -PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLG--------- 210 (252)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhc---------
Confidence 2235678999999999999999877 68999999999999984321000 00001111111
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.....+++++|+|++++.++........|+++.+.++.
T Consensus 211 ---~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~i~~~gg~ 248 (252)
T PRK08220 211 ---IPLGKIARPQEIANAVLFLASDLASHITLQDIVVDGGA 248 (252)
T ss_pred ---CCCcccCCHHHHHHHHHHHhcchhcCccCcEEEECCCe
Confidence 11235889999999999999765456677888777654
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-23 Score=191.14 Aligned_cols=230 Identities=15% Similarity=0.107 Sum_probs=160.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+|+||.++++.|+++|++|++++|+ +..+....... ....++.++.+|++|.+++.++++.+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIK---SNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHH---hcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999986 32222111111 12346889999999999998888764
Q ss_pred --CCcEEEEcccccCc--h---hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV--R---YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~--~---~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... . ...+..+..+++|+.++..+++++. +.+ ++||++||...+.
T Consensus 80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~----------- 146 (272)
T PRK08589 80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG--GSIINTSSFSGQA----------- 146 (272)
T ss_pred cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEeCchhhcC-----------
Confidence 58999999998632 1 1223355788999999877777653 333 4999999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC--ChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPD--MAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+......|+.||.+.+.+++.++.++ ||++++|+||.|.++-.... ..-..+........... ...
T Consensus 147 -~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 217 (272)
T PRK08589 147 -ADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWM--------TPL 217 (272)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhcc--------CCC
Confidence 12345789999999999999998764 79999999999987632110 00000000010000000 001
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|++++.++........|..+.+.++.
T Consensus 218 ~~~~~~~~va~~~~~l~s~~~~~~~G~~i~vdgg~ 252 (272)
T PRK08589 218 GRLGKPEEVAKLVVFLASDDSSFITGETIRIDGGV 252 (272)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCc
Confidence 12567899999999998866556678888887654
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=185.00 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=158.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
+++++||||+|+||.+++++|+++|++|++..++.. .......... ....++.++.+|++|.+++.++++.+
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNR---DAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDREL 78 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCH---HHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999988765432 1111111111 12345788999999999999988764
Q ss_pred -CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHHhc------CCCCeEEEEccccc-cCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACKSA------NPQPSIVWASSSSV-YGLNENVPFSE 231 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~~------~~~~riV~~SS~~v-~g~~~~~~~~e 231 (421)
++|+||||||..... ...+++...+++|+.++.++++++.+. +..++||++||... ++.
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------- 150 (248)
T PRK06123 79 GRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGS-------- 150 (248)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCC--------
Confidence 579999999986431 123345578999999999988887543 11237999999754 321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+ .....|+.+|.+.+.+++.++++. |+++++++||.+++|...... .+.....+....++.
T Consensus 151 ---~-~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~-~~~~~~~~~~~~p~~----------- 214 (248)
T PRK06123 151 ---P-GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG-EPGRVDRVKAGIPMG----------- 214 (248)
T ss_pred ---C-CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC-CHHHHHHHHhcCCCC-----------
Confidence 0 112469999999999999998774 899999999999998432111 122222222222211
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
-+.+++|++++++.++........|+.|++.++
T Consensus 215 -~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~gg 247 (248)
T PRK06123 215 -RGGTAEEVARAILWLLSDEASYTTGTFIDVSGG 247 (248)
T ss_pred -CCcCHHHHHHHHHHHhCccccCccCCEEeecCC
Confidence 134689999999998876544567899998764
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=184.89 Aligned_cols=226 Identities=16% Similarity=0.107 Sum_probs=164.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+.+|+|+||||+|+||.++++.|+++|++|++++|+....+...... .....++.++.+|++|++++.+++++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAEL---RAAGGEARVLVFDVSDEAAVRALIEAAVEA 79 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHH---HhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999654322111111 112356889999999999998888763
Q ss_pred --CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+|||+||...... ..++....++.|+.++.++++++. +.+. ++||++||.....
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~~ii~~ss~~~~~------------ 146 (246)
T PRK05653 80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARY-GRIVNISSVSGVT------------ 146 (246)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECcHHhcc------------
Confidence 5799999999754321 223345678999999999988884 4454 4999999975431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
...+...|+.+|.+.+.+++.++++ .+++++++|||.++++.... ....+........ ....+
T Consensus 147 ~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~--~~~~~~~~~~~~~------------~~~~~ 212 (246)
T PRK05653 147 GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG--LPEEVKAEILKEI------------PLGRL 212 (246)
T ss_pred CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh--hhHHHHHHHHhcC------------CCCCC
Confidence 1234678999999999999998765 48999999999999985432 1111111111111 12457
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
++++|+++++..++........+++|++++|.
T Consensus 213 ~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~ 244 (246)
T PRK05653 213 GQPEEVANAVAFLASDAASYITGQVIPVNGGM 244 (246)
T ss_pred cCHHHHHHHHHHHcCchhcCccCCEEEeCCCe
Confidence 88999999999999765445578999998865
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-23 Score=189.14 Aligned_cols=234 Identities=15% Similarity=0.090 Sum_probs=165.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||++++++|+++|++|++++|+.+.. +..... .....++.++.+|+++.+++.++++++
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEEL---RALQPRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHH---HhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999876533 111111 112356889999999999999888764
Q ss_pred ---CCcEEEEcccccCch---hhccCCchhhhhhHHHHHHHHHHHHh---cCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR---YAMQNPHSYVHSNIAGLVTLLEACKS---ANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~l~~~~~~---~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++.+..+++|+.++.++.+.+.+ .+ .++||++||...+. +
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~------------~ 146 (258)
T PRK08628 80 KFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKAS-RGAIVNISSKTALT------------G 146 (258)
T ss_pred hcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhcc-CcEEEEECCHHhcc------------C
Confidence 689999999964321 12244567899999999998888753 22 24899999976542 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
..+...|+.||.+.+.+++.++.+ .|++++.|+||.+++|..... .........+.+..+ . .
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~ 215 (258)
T PRK08628 147 QGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIP--L---------G 215 (258)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcCC--c---------c
Confidence 235678999999999999999865 489999999999999732110 000011111111111 0 0
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHH
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPK 349 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~e 349 (421)
..++.++|+|++++.++........|..+.+.++. ..+++
T Consensus 216 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~-~~~~~ 255 (258)
T PRK08628 216 HRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGY-VHLDR 255 (258)
T ss_pred ccCCCHHHHHHHHHHHhChhhccccCceEEecCCc-ccccc
Confidence 13678899999999999876555667888886553 44443
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=185.87 Aligned_cols=228 Identities=14% Similarity=0.154 Sum_probs=163.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||.++++.|+++|++|++++|+ +..+...+.. . ....++.++++|++|.+++.++++++
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~-~--~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLI-E--KEGRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHH-H--hcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999986 2211111111 1 12356889999999999999888865
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||..... ...++++..+++|+.++.++++++. +.+. ++||++||...+..
T Consensus 88 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 156 (258)
T PRK06935 88 EFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGS-GKIINIASMLSFQG---------- 156 (258)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCC-eEEEEECCHHhccC----------
Confidence 689999999975421 1233556789999999877777664 3332 49999999876531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
......|+.+|.+.+.+++.++++ .|+++++|+||.+.++..............+.+..+ ..-
T Consensus 157 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 222 (258)
T PRK06935 157 --GKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRIP------------AGR 222 (258)
T ss_pred --CCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhcCC------------CCC
Confidence 133568999999999999999887 489999999999987742210000011111111111 123
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+..++|++.+++.++........|.++.+.++.
T Consensus 223 ~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg~ 255 (258)
T PRK06935 223 WGEPDDLMGAAVFLASRASDYVNGHILAVDGGW 255 (258)
T ss_pred CCCHHHHHHHHHHHcChhhcCCCCCEEEECCCe
Confidence 677899999999988766556778888887653
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=186.59 Aligned_cols=229 Identities=17% Similarity=0.140 Sum_probs=165.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+.......... ....++.++++|++|.+++.++++.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE---AAGGRAHAIAADLADPASVQRFFDAAAA 80 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999886433222211111 12346899999999999999888763
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ...++.+..+++|+.++.++++++.+.. ..++||++||...+.
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------ 148 (250)
T PRK12939 81 ALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALW------------ 148 (250)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc------------
Confidence 689999999985431 1223445678899999999988875321 123999999976542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+......|+.+|.+.+.+++.++.+ .++++++++||.+.++....... ..+........ ....+
T Consensus 149 ~~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~------------~~~~~ 215 (250)
T PRK12939 149 GAPKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA-DERHAYYLKGR------------ALERL 215 (250)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC-hHHHHHHHhcC------------CCCCC
Confidence 1234567999999999999998866 48999999999998774321110 01222222221 12347
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
++++|+|++++.++........|+.+++.++.
T Consensus 216 ~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~ 247 (250)
T PRK12939 216 QVPDDVAGAVLFLLSDAARFVTGQLLPVNGGF 247 (250)
T ss_pred CCHHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 88999999999999876445678999988764
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=187.18 Aligned_cols=233 Identities=15% Similarity=0.100 Sum_probs=159.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|+++||||+|+||.++++.|+++|++|++++|+.+..+....... ....++.++++|++|++++.++++.+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS---KDGGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 6799999999999999999999999999999986543222221111 12356888999999999999888765
Q ss_pred CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||..... ...++.+..+++|+.++..+++++.+ .+..++||++||...+. ..
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~ 146 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV------------GN 146 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc------------CC
Confidence 589999999975321 12234467899999998877777643 23234899999976432 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHc--CCCeEE-EecCCCCcceee
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ--GKPITV-YRGKNHVDLARD 310 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~ 310 (421)
+....|+.+|.+.+.+++.++.+ .|+++++|+||.+.+|... .+...... +.+... ....-..-...-
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (256)
T PRK08643 147 PELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMF------DIAHQVGENAGKPDEWGMEQFAKDITLGR 220 (256)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhh------HHHhhhccccCCCchHHHHHHhccCCCCC
Confidence 34578999999999999998876 4899999999999887321 11000000 000000 000000000112
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+..++|+|.++..++........|.++.+.++.
T Consensus 221 ~~~~~~va~~~~~L~~~~~~~~~G~~i~vdgg~ 253 (256)
T PRK08643 221 LSEPEDVANCVSFLAGPDSDYITGQTIIVDGGM 253 (256)
T ss_pred CcCHHHHHHHHHHHhCccccCccCcEEEeCCCe
Confidence 567899999999999776556788888887653
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=185.29 Aligned_cols=228 Identities=15% Similarity=0.122 Sum_probs=163.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
.++|+++||||+|+||+++++.|+++|++|+++.|+.+........ .......++.++.+|++|.+++.++++++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVA--EIEAAGGRAIAVQADVADAAAVTRLFDAAETA 80 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH--HHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999998887754321111111 11112357899999999999999998864
Q ss_pred --CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
++|+||||||.... ....++.+..+++|+.++.++++++.+.. ..++||++||...+. +.+
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------~~~ 148 (245)
T PRK12937 81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL------------PLP 148 (245)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC------------CCC
Confidence 68999999997542 11233456789999999999998886542 124899999876532 224
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 238 PASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
+...|+.+|.+.+.+++.++.++ |+++++++||.+.++..... ........+....+.. -+.++
T Consensus 149 ~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~ 215 (245)
T PRK12937 149 GYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG-KSAEQIDQLAGLAPLE------------RLGTP 215 (245)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc-CCHHHHHHHHhcCCCC------------CCCCH
Confidence 56789999999999999987763 79999999999887632111 1112333333332211 24578
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+|++++++.++........|..+++.++
T Consensus 216 ~d~a~~~~~l~~~~~~~~~g~~~~~~~g 243 (245)
T PRK12937 216 EEIAAAVAFLAGPDGAWVNGQVLRVNGG 243 (245)
T ss_pred HHHHHHHHHHcCccccCccccEEEeCCC
Confidence 9999999999976655567888888754
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=184.77 Aligned_cols=225 Identities=18% Similarity=0.157 Sum_probs=164.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||.++++.|+++|++|++++|+.+. .... .......+.++.+|++|.+++.+++++.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~-----~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 85 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDV-----AEVA-AQLLGGNAKGLVCDVSDSQSVEAAVAAVIS 85 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHH-HHhhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999985431 1111 1122356779999999999999888764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++.+..+++|+.|+.++++++.+ .+ .++||++||.....
T Consensus 86 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~----------- 153 (255)
T PRK06841 86 AFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAG-GGKIVNLASQAGVV----------- 153 (255)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC-CceEEEEcchhhcc-----------
Confidence 689999999975421 12234456899999999999998754 23 34999999976431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
.......|+.+|.+.+.+++.++++ .|++++.|+||.+..+....... ........+..+ ...
T Consensus 154 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~------------~~~ 219 (255)
T PRK06841 154 -ALERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWA-GEKGERAKKLIP------------AGR 219 (255)
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccc-hhHHHHHHhcCC------------CCC
Confidence 1134567999999999999998877 48999999999998874321100 011111111111 224
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+.+++|+|++++.++........|.++.+.++.
T Consensus 220 ~~~~~~va~~~~~l~~~~~~~~~G~~i~~dgg~ 252 (255)
T PRK06841 220 FAYPEEIAAAALFLASDAAAMITGENLVIDGGY 252 (255)
T ss_pred CcCHHHHHHHHHHHcCccccCccCCEEEECCCc
Confidence 789999999999999876556778999887764
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-23 Score=193.40 Aligned_cols=190 Identities=21% Similarity=0.138 Sum_probs=147.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
...+++++|||||+|||.++|++|+++|++|++.+|+.++.+++.+.... ......+.++++|++|.++++++.+.+
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~-~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQK-GKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999988766666555544 345678899999999999999998776
Q ss_pred ---CCcEEEEcccccCchh--hccCCchhhhhhHHHHHHHHHH----HHhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY--AMQNPHSYVHSNIAGLVTLLEA----CKSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~--~~~~~~~~~~~N~~g~~~l~~~----~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|++|||||++..+. +.+..+..+.+|+.|+..|.+. ++++.. .|||++||........-..++.+...
T Consensus 111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RIV~vsS~~~~~~~~~~~l~~~~~~ 189 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRIVNVSSILGGGKIDLKDLSGEKAK 189 (314)
T ss_pred cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCEEEEcCccccCccchhhccchhcc
Confidence 6899999999987654 4567899999999996555554 566654 49999999876111111112111111
Q ss_pred -CCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCC
Q 043169 236 -DQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 236 -~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~ 278 (421)
......|+.||.+...++.+++++. ||.++.++||.+.++.-.
T Consensus 190 ~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~ 235 (314)
T KOG1208|consen 190 LYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLS 235 (314)
T ss_pred CccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCccccccee
Confidence 1233459999999999999999885 799999999999987433
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=186.13 Aligned_cols=228 Identities=15% Similarity=0.129 Sum_probs=161.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+|+||||+|+||.+++++|+++|++|++++|+.+..+...+.. .....++.++++|++|.++++++++..
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAI---VAAGGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998653222211111 112345788999999999998888764
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||.... ....++.+..+++|+.++.++++++ ++.+. ++||++||...+.
T Consensus 82 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~---------- 150 (252)
T PRK07035 82 RHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGG-GSIVNVASVNGVS---------- 150 (252)
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-cEEEEECchhhcC----------
Confidence 58999999996421 1223345578999999988888776 33333 4999999975432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.++...|+.||.+.+.+++.++.++ |+++++|+||.+..+.......-..+........+ ..
T Consensus 151 --~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 216 (252)
T PRK07035 151 --PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIP------------LR 216 (252)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCC------------CC
Confidence 22456789999999999999998774 89999999999977632211000122222222211 11
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.+..++|+|++++.++........|.++.+.++
T Consensus 217 ~~~~~~~va~~~~~l~~~~~~~~~g~~~~~dgg 249 (252)
T PRK07035 217 RHAEPSEMAGAVLYLASDASSYTTGECLNVDGG 249 (252)
T ss_pred CcCCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 256789999999999887655567888887654
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=187.19 Aligned_cols=230 Identities=15% Similarity=0.122 Sum_probs=164.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+|+||.++++.|+++|++|++++|+.++.+...... .....++.++++|++|.++++++++..
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i---~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHL---EALGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH---HhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999643222111111 112346788999999999998777653
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ...++++..+++|+.++.++++++.+. ...++||++||...+.....
T Consensus 87 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~-------- 158 (259)
T PRK08213 87 FGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP-------- 158 (259)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc--------
Confidence 589999999974321 123344578899999999999987554 12349999999765432110
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
...+...|+.+|++.+.+++.+++++ |+++++++||.+.++.... .++.+.+.+..+.++.. +
T Consensus 159 ~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~--~~~~~~~~~~~~~~~~~------------~ 224 (259)
T PRK08213 159 EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRG--TLERLGEDLLAHTPLGR------------L 224 (259)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhh--hhHHHHHHHHhcCCCCC------------C
Confidence 01245789999999999999998764 7999999999987763221 23344444444433222 3
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
...+|+++++..++........|..+++.++
T Consensus 225 ~~~~~va~~~~~l~~~~~~~~~G~~~~~~~~ 255 (259)
T PRK08213 225 GDDEDLKGAALLLASDASKHITGQILAVDGG 255 (259)
T ss_pred cCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 4579999999888876645567888888765
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=180.39 Aligned_cols=204 Identities=18% Similarity=0.126 Sum_probs=159.1
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.+.+|+.||||||++|+|+.+|.+++++|.++++.|.+.+..++..++.+.. ..++.+.||++|.+++.+..+++
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~----g~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI----GEAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc----CceeEEEecCCCHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999888777776665543 37999999999999998888765
Q ss_pred ----CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
.+|++|||||++.... +.+..+.++++|+.|+.+..++. .+.+ .++||.++|++.+-
T Consensus 110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS~aG~~---------- 178 (300)
T KOG1201|consen 110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIASVAGLF---------- 178 (300)
T ss_pred HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehhhhccc----------
Confidence 5899999999986532 23344578999999976666655 4444 34999999977541
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH------hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI------YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~------~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
......+|+.||.++..+.+.+..+ .||+++.++|+.+-.. +.++. . .-.
T Consensus 179 --g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tg--------------mf~~~-~-------~~~ 234 (300)
T KOG1201|consen 179 --GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTG--------------MFDGA-T-------PFP 234 (300)
T ss_pred --CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecccc--------------ccCCC-C-------CCc
Confidence 2345688999999999999888766 3799999999987643 11221 0 112
Q ss_pred ceeecccHHHHHHHHHHhhhcC
Q 043169 307 LARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
...+.+.++.+|+.++.++..+
T Consensus 235 ~l~P~L~p~~va~~Iv~ai~~n 256 (300)
T KOG1201|consen 235 TLAPLLEPEYVAKRIVEAILTN 256 (300)
T ss_pred cccCCCCHHHHHHHHHHHHHcC
Confidence 3556889999999999998876
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=186.30 Aligned_cols=235 Identities=15% Similarity=0.087 Sum_probs=160.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+++||||+|+||.++++.|+++|++|++++++.....+..+...... ....++.++++|++|.+++.++++.+
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999998888775543333222222111 12346889999999999999988764
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||.... ....++++..+++|+.++.++++++.+... .+++++++|+.+.. +.
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~------------~~ 153 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA------------FT 153 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc------------cC
Confidence 68999999997532 223345667899999999999998865321 23677664332211 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
+....|+.||++.+.+++.++++. |+++++++||.+.++...+... ..... ...... . ........+.+
T Consensus 154 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~-~~~~~-~~~~~~--~----~~~~~~~~~~~ 225 (257)
T PRK12744 154 PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEG-AEAVA-YHKTAA--A----LSPFSKTGLTD 225 (257)
T ss_pred CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccc-cchhh-cccccc--c----ccccccCCCCC
Confidence 235789999999999999999874 7999999999998763221110 00000 000000 0 01111124789
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
++|+|.++..+++.. ....|+++++.++.
T Consensus 226 ~~dva~~~~~l~~~~-~~~~g~~~~~~gg~ 254 (257)
T PRK12744 226 IEDIVPFIRFLVTDG-WWITGQTILINGGY 254 (257)
T ss_pred HHHHHHHHHHhhccc-ceeecceEeecCCc
Confidence 999999999999853 34568899988764
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=183.76 Aligned_cols=226 Identities=14% Similarity=0.110 Sum_probs=162.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+++||||+|+||+++++.|+++|++|++.+++.. ......... ...++.++++|++|++++.++++++
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~---~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE---DAAEALADE--LGDRAIALQADVTDREQVQAMFATATE 76 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHHHH--hCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999998766332 111111111 1246889999999999999988764
Q ss_pred ---C-CcEEEEcccccCc----------hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCC
Q 043169 165 ---A-FTHVMHLAAQAGV----------RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNEN 226 (421)
Q Consensus 165 ---~-~d~vi~~Ag~~~~----------~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~ 226 (421)
+ +|+||||||.... ..+.++....+++|+.++.++++++.+ .+. ++||++||.....
T Consensus 77 ~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~iss~~~~~---- 151 (253)
T PRK08642 77 HFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGF-GRIINIGTNLFQN---- 151 (253)
T ss_pred HhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC-eEEEEECCccccC----
Confidence 2 8999999986311 112233456799999999999998853 332 4999999965321
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCC
Q 043169 227 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 227 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
+..+...|+.||.+.+.+++.++++ .|++++.|+||.+..+...... .......+....+
T Consensus 152 --------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~-~~~~~~~~~~~~~-------- 214 (253)
T PRK08642 152 --------PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAAT-PDEVFDLIAATTP-------- 214 (253)
T ss_pred --------CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccC-CHHHHHHHHhcCC--------
Confidence 2245678999999999999999887 4799999999999875322111 1122222222111
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+.+++|+|++++.++........|..+.+.++.
T Consensus 215 ----~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg~ 250 (253)
T PRK08642 215 ----LRKVTTPQEFADAVLFFASPWARAVTGQNLVVDGGL 250 (253)
T ss_pred ----cCCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCCe
Confidence 123788999999999999876557788999887753
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=187.74 Aligned_cols=217 Identities=18% Similarity=0.173 Sum_probs=152.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
++|+++||||+|+||++++++|+++|++|++++|+.+.. ......++.++.+|++|.+++.++++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l---------~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKM---------EDLASLGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH---------HHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999854211 1112246889999999999999888754
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHH----HHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTL----LEACKSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l----~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++++..+++|+.|+..+ ++.+++.+. ++||++||...+. +
T Consensus 73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS~~~~~------------~ 139 (273)
T PRK06182 73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISSMGGKI------------Y 139 (273)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcchhhcC------------C
Confidence 689999999986432 13345677899999995444 445566654 3999999976431 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC----------ChHHH----HHHHHHcCCCeEE
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD----------MAYFS----FTRNILQGKPITV 298 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~----------~~~~~----~~~~~~~~~~~~~ 298 (421)
.+....|+.+|.+.+.+++.++.+ +|+++++++||.+.++..... ..... +...+..
T Consensus 140 ~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 213 (273)
T PRK06182 140 TPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRS------ 213 (273)
T ss_pred CCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHH------
Confidence 123467999999999999888754 589999999999998743110 00000 0001110
Q ss_pred EecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 299 YRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 299 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
......+.+++|+|++++.++.... ....|+++.+
T Consensus 214 ------~~~~~~~~~~~~vA~~i~~~~~~~~---~~~~~~~g~~ 248 (273)
T PRK06182 214 ------TYGSGRLSDPSVIADAISKAVTARR---PKTRYAVGFG 248 (273)
T ss_pred ------hhccccCCCHHHHHHHHHHHHhCCC---CCceeecCcc
Confidence 0112346789999999999987541 2356766543
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=184.79 Aligned_cols=224 Identities=12% Similarity=0.127 Sum_probs=162.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++++++||||+|+||.++++.|+++|++|++++|+.++.+....... ....++.++++|++|.+++.++++..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECG---ALGTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999986533222211111 12356888999999999988888764
Q ss_pred --CCcEEEEcccccCch-------------hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCC
Q 043169 165 --AFTHVMHLAAQAGVR-------------YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNE 225 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~-------------~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~ 225 (421)
++|+||||||..... .+.++...++++|+.|+..+.+.+. +....++||++||...|+.
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~-- 157 (253)
T PRK08217 80 FGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN-- 157 (253)
T ss_pred cCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC--
Confidence 589999999964321 1223345678899999887776543 3222248999999876641
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecC
Q 043169 226 NVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGK 302 (421)
Q Consensus 226 ~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
.+...|+.+|.+.+.+++.++++ .|+++++++||.+.++.... ..+.+...+....+
T Consensus 158 -----------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~--~~~~~~~~~~~~~~------- 217 (253)
T PRK08217 158 -----------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAA--MKPEALERLEKMIP------- 217 (253)
T ss_pred -----------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccc--cCHHHHHHHHhcCC-------
Confidence 34578999999999999998865 58999999999998874432 11233333333222
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+.+++|+|+++..++... ...|++|++.++-
T Consensus 218 -----~~~~~~~~~~a~~~~~l~~~~--~~~g~~~~~~gg~ 251 (253)
T PRK08217 218 -----VGRLGEPEEIAHTVRFIIEND--YVTGRVLEIDGGL 251 (253)
T ss_pred -----cCCCcCHHHHHHHHHHHHcCC--CcCCcEEEeCCCc
Confidence 123668899999999998653 4678999998753
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=184.82 Aligned_cols=228 Identities=13% Similarity=0.086 Sum_probs=164.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||++++++|+++|++|++++|+.+..+....... ....++.++.+|++|.+++.++++++
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR---AAGGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999996532222111111 12346889999999999998888764
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ...++++..+++|+.++.++.+.+.+ .+. ++||++||...+.
T Consensus 86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~ss~~~~~------------ 152 (256)
T PRK06124 86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGY-GRIIAITSIAGQV------------ 152 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEeechhcc------------
Confidence 579999999975431 22344567899999999888876643 443 4999999976532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
.......|+.+|.+.+.+++.++.+ .|+++++|+||.+.++..........+...+....+ ...+
T Consensus 153 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~ 220 (256)
T PRK06124 153 ARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRTP------------LGRW 220 (256)
T ss_pred CCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcCC------------CCCC
Confidence 1234578999999999999988776 389999999999998843211101112222222111 1237
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
++++|++++++.++..+.....|+.+.+.++.
T Consensus 221 ~~~~~~a~~~~~l~~~~~~~~~G~~i~~dgg~ 252 (256)
T PRK06124 221 GRPEEIAGAAVFLASPAASYVNGHVLAVDGGY 252 (256)
T ss_pred CCHHHHHHHHHHHcCcccCCcCCCEEEECCCc
Confidence 88999999999999876555667777776543
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-23 Score=194.75 Aligned_cols=188 Identities=14% Similarity=0.051 Sum_probs=141.9
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.+++++|+++||||+||||.+++++|+++|++|++++|+.++.++...+... .....++.++++|++|.++++++++.+
T Consensus 9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~-~~~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRT-AVPDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999976544443333322 122346889999999999999988764
Q ss_pred -----CCcEEEEcccccCch---hhccCCchhhhhhHHHHHHHHHHHHh---cCCCCeEEEEcccccc-CCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR---YAMQNPHSYVHSNIAGLVTLLEACKS---ANPQPSIVWASSSSVY-GLNENVPFSEA 232 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~l~~~~~~---~~~~~riV~~SS~~v~-g~~~~~~~~e~ 232 (421)
++|+||||||..... .+.++.+..+++|+.|+..+++.+.. .+ .+|||++||...+ +.....++.++
T Consensus 88 ~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~-~~riv~vsS~~~~~~~~~~~~~~~~ 166 (313)
T PRK05854 88 RAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG-RARVTSQSSIAARRGAINWDDLNWE 166 (313)
T ss_pred HHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC-CCCeEEEechhhcCCCcCccccccc
Confidence 589999999986532 24456778899999998877776642 22 2499999997654 32222223322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGP 275 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~ 275 (421)
.. ..+...|+.||++.+.++++++++ .||++++++||.|..+
T Consensus 167 ~~-~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~ 213 (313)
T PRK05854 167 RS-YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213 (313)
T ss_pred cc-CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence 22 245678999999999999999864 3799999999999765
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=186.24 Aligned_cols=228 Identities=14% Similarity=0.078 Sum_probs=162.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+|+||.++++.|+++|++|++++|+.+..+....... ....++.++.+|++|++++.++++.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIR---AAGRRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996532222111111 12346889999999999998888764
Q ss_pred --CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||.... ..+.++++..+++|+.++.++++++.+. ...++||++||.....
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~------------ 152 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL------------ 152 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC------------
Confidence 68999999997432 1233456678999999999999998641 2234899999965421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
+..+...|+.+|.+.+.+++.++.+. +++++.|+||.+.++....-..-..+...+....+ .....
T Consensus 153 ~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 220 (263)
T PRK07814 153 AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKATP------------LRRLG 220 (263)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCC------------CCCCc
Confidence 12456789999999999999998874 58999999999876522110000112112211111 11245
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.++|+|++++.++........|..+.+.++
T Consensus 221 ~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 250 (263)
T PRK07814 221 DPEDIAAAAVYLASPAGSYLTGKTLEVDGG 250 (263)
T ss_pred CHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 789999999999876544566788877654
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-22 Score=184.15 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=160.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.+++|+++||||+|+||.++++.|+++|++|++++|+.... ....... .....++.++.+|++|.+++.++++..
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~---~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~ 80 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEE---ANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAV 80 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHH---HHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999999988854211 1111111 112356788999999999998888754
Q ss_pred ----CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHH----HHhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEA----CKSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~----~~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||...... ..++++..+++|+.++..+++. +++.+..++||++||...+.
T Consensus 81 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~---------- 150 (261)
T PRK08936 81 KEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI---------- 150 (261)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC----------
Confidence 6899999999754321 2234556799999887665554 45554445999999975431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.++...|+.+|.+.+.+++.++.++ ||++++|+||.+.+|.......-+.....+....+ ..
T Consensus 151 --~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 216 (261)
T PRK08936 151 --PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMIP------------MG 216 (261)
T ss_pred --CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCC------------CC
Confidence 22456789999999999998887664 89999999999988743211111112222222211 11
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
-+..++|+++++..++........|..+.+.++.
T Consensus 217 ~~~~~~~va~~~~~l~s~~~~~~~G~~i~~d~g~ 250 (261)
T PRK08936 217 YIGKPEEIAAVAAWLASSEASYVTGITLFADGGM 250 (261)
T ss_pred CCcCHHHHHHHHHHHcCcccCCccCcEEEECCCc
Confidence 2667899999999998876556677777776553
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=185.18 Aligned_cols=250 Identities=21% Similarity=0.232 Sum_probs=172.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHH--------HhhcCCceEEEEcccC------CHH
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARK--------ALLNNHGVFVIEGDIN------DAK 155 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~v~~~~~Dl~------d~~ 155 (421)
++||+||||||+|.+++.+|+.+- .+|++++|-.+.. .+..+... +.....+++++.+|+. +..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E-~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~ 79 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDE-AALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER 79 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHH-HHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence 479999999999999999999874 6999999955422 12222221 1234578999999998 556
Q ss_pred HHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCC----CCC
Q 043169 156 LLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVP----FSE 231 (421)
Q Consensus 156 ~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~----~~e 231 (421)
..+++.+.+ |.|||||+..+ ....+......|+.||..+++.|...+.+ .+.|+||.+++....... +++
T Consensus 80 ~~~~La~~v--D~I~H~gA~Vn---~v~pYs~L~~~NVlGT~evlrLa~~gk~K-p~~yVSsisv~~~~~~~~~~~~~~~ 153 (382)
T COG3320 80 TWQELAENV--DLIIHNAALVN---HVFPYSELRGANVLGTAEVLRLAATGKPK-PLHYVSSISVGETEYYSNFTVDFDE 153 (382)
T ss_pred HHHHHhhhc--ceEEecchhhc---ccCcHHHhcCcchHhHHHHHHHHhcCCCc-eeEEEeeeeeccccccCCCcccccc
Confidence 788888877 99999999754 34566788899999999999999988764 899999999976443322 222
Q ss_pred CCC----CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCC
Q 043169 232 ADR----TDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 232 ~~~----~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
.++ .....++|+.||+.+|.++++...+ |++++|+|||+|-|+...+. ..+..+...+++-...+
T Consensus 154 ~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P------ 226 (382)
T COG3320 154 ISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAP------ 226 (382)
T ss_pred ccccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCC------
Confidence 121 1134588999999999999999987 99999999999999876332 23345555555433332
Q ss_pred CCcceeecccHHHHHH-----------HHHHhhhcCCCCCCceEEE-ecCCCccCHHHHHHHHHH
Q 043169 304 HVDLARDFTYIDDIVK-----------GCLGSLDTSAGPAPYRIFN-LGNTSPVTVPKLVNILER 356 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~-----------a~~~~l~~~~~~~~~~~~~-i~~~~~~t~~el~~~l~~ 356 (421)
+....++.+.++++++ ++..+...+ ......|+ ..-|..+...++.+.+.+
T Consensus 227 ~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~--~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 227 DSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHS--DIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred CcccchhhCccceeeEEeehhhhhHHHHHHHhccCc--cchhhheecccCCCccchhHHHHhHhh
Confidence 1222333343333333 333333222 22234444 333667889999888877
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=186.49 Aligned_cols=229 Identities=12% Similarity=0.065 Sum_probs=157.4
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh--hcCCceEEEEcccCCHHHHHHHhhc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL--LNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
..+++|+++||||+++||++++++|+++|++|++++|+... ......... ....++.++.+|++|+++++++++.
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVE---EANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 34789999999999999999999999999999988764321 111111111 1234688999999999999988876
Q ss_pred c-----CCcEEEEcccccCc-------h---hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCC
Q 043169 164 V-----AFTHVMHLAAQAGV-------R---YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLN 224 (421)
Q Consensus 164 ~-----~~d~vi~~Ag~~~~-------~---~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~ 224 (421)
+ ++|+||||||.... . ...++....+++|+.+...+.+.+. +.+ .++||++||...+.
T Consensus 81 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~-- 157 (260)
T PRK08416 81 IDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVG-GGSIISLSSTGNLV-- 157 (260)
T ss_pred HHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccC-CEEEEEEecccccc--
Confidence 4 68999999986421 1 1123345678889888776666553 333 24999999975421
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEec
Q 043169 225 ENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRG 301 (421)
Q Consensus 225 ~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (421)
+.+....|+.||.+.+.+++.++.++ ||++++|+||.+-.+-...-..............+
T Consensus 158 ----------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~------ 221 (260)
T PRK08416 158 ----------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSP------ 221 (260)
T ss_pred ----------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCC------
Confidence 12345689999999999999999874 89999999999876521100000111111222111
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
..-+..++|+|.+++.++........|+.+.+.++
T Consensus 222 ------~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdgg 256 (260)
T PRK08416 222 ------LNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDGG 256 (260)
T ss_pred ------CCCCCCHHHHHHHHHHHcChhhhcccCcEEEEcCC
Confidence 11256789999999999876545567888888654
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=187.09 Aligned_cols=228 Identities=14% Similarity=0.156 Sum_probs=162.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+..+...+... ....++.++++|++|.+++.++++..
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIK---AAGGEALAVKADVLDKESLEQARQQILE 83 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999996432221111111 11346889999999999998887753
Q ss_pred ---CCcEEEEcccccCch-------------------hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccc
Q 043169 165 ---AFTHVMHLAAQAGVR-------------------YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSS 218 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~-------------------~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~ 218 (421)
++|+||||||...+. ...++++..+++|+.++..+++++ ++.+ .++||++||.
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~ 162 (278)
T PRK08277 84 DFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRK-GGNIINISSM 162 (278)
T ss_pred HcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEccc
Confidence 689999999964321 112345578899999988766655 3333 2499999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC-----CChHHHHHHHH
Q 043169 219 SVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRP-----DMAYFSFTRNI 290 (421)
Q Consensus 219 ~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~-----~~~~~~~~~~~ 290 (421)
..+. +..+...|+.||.+.+.+++.++.++ |+++++|+||.|.++.... ..........+
T Consensus 163 ~~~~------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 230 (278)
T PRK08277 163 NAFT------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKI 230 (278)
T ss_pred hhcC------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHH
Confidence 8763 22446789999999999999998875 7999999999999874221 00001111111
Q ss_pred HcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhc-CCCCCCceEEEecCC
Q 043169 291 LQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT-SAGPAPYRIFNLGNT 342 (421)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~-~~~~~~~~~~~i~~~ 342 (421)
....+ ..-+..++|+|++++.++.. ......|..+.+.++
T Consensus 231 ~~~~p------------~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG 271 (278)
T PRK08277 231 LAHTP------------MGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGG 271 (278)
T ss_pred hccCC------------ccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCC
Confidence 11111 12356789999999999887 555667888888765
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=184.49 Aligned_cols=227 Identities=12% Similarity=0.122 Sum_probs=161.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|+++||||+|+||.++++.|+++|++|++++|+.+..+....... ....++.++++|++|+++++++++++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIE---QFPGQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999999996532222111111 11357889999999999999888765
Q ss_pred CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||.... ....++++.++++|+.|+.++++++.+ .+..++||++||...+. +.
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~ 145 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD------------AG 145 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc------------CC
Confidence 68999999986432 123344567899999999999998843 22234899999976432 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCCCCC-hHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVYGPWGRPDM-AYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
.....|+.+|.+.+.+++.++.+ +|+++++|+||.+.++...... ......+.+.+..+. .-+
T Consensus 146 ~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 213 (252)
T PRK07677 146 PGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPL------------GRL 213 (252)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCCC------------CCC
Confidence 34467999999999999988776 3899999999999854221110 011222333332211 125
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..++|+++++..++........|..+.+.++.
T Consensus 214 ~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg~ 245 (252)
T PRK07677 214 GTPEEIAGLAYFLLSDEAAYINGTCITMDGGQ 245 (252)
T ss_pred CCHHHHHHHHHHHcCccccccCCCEEEECCCe
Confidence 67899999999988765445678888887653
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=185.93 Aligned_cols=228 Identities=14% Similarity=0.091 Sum_probs=159.4
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++|++|||||++ +||.+++++|+++|++|++.+|+... ....+..... . ....++++|++|.++++++++.+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~-~~~~~~~~~~-~--g~~~~~~~Dv~d~~~v~~~~~~~~ 80 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL-GKRVKPLAES-L--GSDFVLPCDVEDIASVDAVFEALE 80 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH-HHHHHHHHHh-c--CCceEEeCCCCCHHHHHHHHHHHH
Confidence 5789999999997 99999999999999999999885321 1111111111 1 22357899999999999888764
Q ss_pred ----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||.... ..+.++++..+++|+.++.++++++...-. .++||++||.....
T Consensus 81 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~--------- 151 (271)
T PRK06505 81 KKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR--------- 151 (271)
T ss_pred HHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc---------
Confidence 68999999997531 123445667899999999888887753211 24899999975421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
..+....|+.||.+.+.+++.++.+ +||+|+.|.||.|..+-...............+..+.
T Consensus 152 ---~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p~------------ 216 (271)
T PRK06505 152 ---VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSPL------------ 216 (271)
T ss_pred ---cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCCc------------
Confidence 1234568999999999999999887 4899999999999876321100000111111111111
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|++++.++........|..+.+.++.
T Consensus 217 ~r~~~peeva~~~~fL~s~~~~~itG~~i~vdgG~ 251 (271)
T PRK06505 217 RRTVTIDEVGGSALYLLSDLSSGVTGEIHFVDSGY 251 (271)
T ss_pred cccCCHHHHHHHHHHHhCccccccCceEEeecCCc
Confidence 12457899999999999865556678888887664
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-22 Score=182.65 Aligned_cols=228 Identities=12% Similarity=0.087 Sum_probs=158.3
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++|+++||||++ +||.++++.|+++|++|++.+|+. +..+..+.... ....+.++.+|++|+++++++++.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~ 79 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAA---QLGSDIVLPCDVAEDASIDAMFAELG 79 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHh---ccCCceEeecCCCCHHHHHHHHHHHH
Confidence 6789999999986 999999999999999999988852 11122221111 1234678899999999999988764
Q ss_pred ----CCcEEEEcccccCch---------hhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR---------YAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~---------~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|++|||||+.... .+.++++..+++|+.|...+.+++.... ..++||++||.+...
T Consensus 80 ~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~-------- 151 (262)
T PRK07984 80 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-------- 151 (262)
T ss_pred hhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC--------
Confidence 589999999975321 1223445678999999888888764311 124899999876421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+....|+.||.+.+.+++.++.+ +||++++|.||.+..+-.............+....+
T Consensus 152 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------ 215 (262)
T PRK07984 152 ----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP------------ 215 (262)
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcCC------------
Confidence 1234568999999999999999987 489999999999977521100001111121211111
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..-+..++|++.+++.++........|..+.+.++.
T Consensus 216 ~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgg~ 251 (262)
T PRK07984 216 IRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGF 251 (262)
T ss_pred CcCCCCHHHHHHHHHHHcCcccccccCcEEEECCCc
Confidence 112567899999999999876556678888887653
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-22 Score=182.01 Aligned_cols=226 Identities=12% Similarity=0.114 Sum_probs=161.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||.+++++|+++|++|++++++.. +....... .....+.++++|++|.+++.++++++
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVT---ALGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998876431 11111111 12346788999999999999988764
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ...++++..+++|+.++.++++++.. .+..++||++||...+..
T Consensus 83 ~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 151 (253)
T PRK08993 83 FGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQG----------- 151 (253)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccC-----------
Confidence 689999999975321 23345678899999999988887743 222348999999876632
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
......|+.+|.+.+.+++.++.+ +|++++.++||.+..+-...-.......+.+.+.-+ ..-+
T Consensus 152 -~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~~p------------~~r~ 218 (253)
T PRK08993 152 -GIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIP------------AGRW 218 (253)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhcCC------------CCCC
Confidence 123467999999999999998877 589999999999987632110000011111221111 0126
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
..++|+|++++.++........|..+.+.++
T Consensus 219 ~~p~eva~~~~~l~s~~~~~~~G~~~~~dgg 249 (253)
T PRK08993 219 GLPSDLMGPVVFLASSASDYINGYTIAVDGG 249 (253)
T ss_pred cCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 6789999999999987655667788777654
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=186.58 Aligned_cols=228 Identities=12% Similarity=0.039 Sum_probs=157.9
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++|+++||||+ ++||.++++.|+++|++|++.+|+.. ..+........ . ... .++++|++|.++++++++.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~-~-~~~-~~~~~Dv~d~~~v~~~~~~i~ 78 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQE-L-GSD-YVYELDVSKPEHFKSLAESLK 78 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHh-c-CCc-eEEEecCCCHHHHHHHHHHHH
Confidence 578999999997 79999999999999999999988632 11111211111 1 122 67899999999999888765
Q ss_pred ----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||.... ..+.++++..+++|+.|+..+.+++...-. .++||++||.+...
T Consensus 79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~--------- 149 (274)
T PRK08415 79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK--------- 149 (274)
T ss_pred HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc---------
Confidence 68999999997531 123345567899999998888887754221 24899999975421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.+....|+.||.+.+.+++.++.+ +||++++|.||.|..+...................+ .
T Consensus 150 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------l 214 (274)
T PRK08415 150 ---YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEINAP------------L 214 (274)
T ss_pred ---CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhhhhhhhCc------------h
Confidence 1233567999999999999999877 489999999999987521100000000000000001 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|.+++.++........|..+.+.++.
T Consensus 215 ~r~~~pedva~~v~fL~s~~~~~itG~~i~vdGG~ 249 (274)
T PRK08415 215 KKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVDAGY 249 (274)
T ss_pred hccCCHHHHHHHHHHHhhhhhhcccccEEEEcCcc
Confidence 12567899999999999865456678888887664
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=179.48 Aligned_cols=223 Identities=12% Similarity=0.040 Sum_probs=159.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-C
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-A 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~ 165 (421)
.+++|+||||||+|+||+++++.|+++|++|++++++.. +..++... ..++.++.+|++|.+++.++++.. +
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~---~~~~~l~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSK---DAAERLAQ----ETGATAVQTDSADRDAVIDVVRKSGA 75 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCH---HHHHHHHH----HhCCeEEecCCCCHHHHHHHHHHhCC
Confidence 367899999999999999999999999999988876432 11111111 124678899999999998888764 5
Q ss_pred CcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhc-CCCCeEEEEccccccCCCCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSA-NPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240 (421)
Q Consensus 166 ~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~-~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~ 240 (421)
+|+||||||.... ....++++..+++|+.|+.++++.+.+. ...++||++||..... .+.++..
T Consensus 76 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~ 144 (237)
T PRK12742 76 LDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR-----------MPVAGMA 144 (237)
T ss_pred CcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc-----------CCCCCCc
Confidence 7999999997532 1223456788999999999888766543 1124999999965411 1224567
Q ss_pred hHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHH
Q 043169 241 LYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 317 (421)
.|+.+|++.+.+++.++.+ .|+++++|+||.+..+....... ....+....+ ...+..++|+
T Consensus 145 ~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~---~~~~~~~~~~------------~~~~~~p~~~ 209 (237)
T PRK12742 145 AYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGP---MKDMMHSFMA------------IKRHGRPEEV 209 (237)
T ss_pred chHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccH---HHHHHHhcCC------------CCCCCCHHHH
Confidence 8999999999999988876 47999999999998764322111 1111111111 1125678999
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCC
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
++++..++........|..+.+.++
T Consensus 210 a~~~~~l~s~~~~~~~G~~~~~dgg 234 (237)
T PRK12742 210 AGMVAWLAGPEASFVTGAMHTIDGA 234 (237)
T ss_pred HHHHHHHcCcccCcccCCEEEeCCC
Confidence 9999999887655667888887654
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-22 Score=183.19 Aligned_cols=230 Identities=12% Similarity=0.072 Sum_probs=160.1
Q ss_pred CCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++|+++||||+ ++||.+++++|+++|++|++++|+... .+..++.... ....++.++++|++|.++++++++.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~-~~~~~~~~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERL-EKEVRELADT-LEGQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccc-hHHHHHHHHH-cCCCceEEEecCCCCHHHHHHHHHHH
Confidence 3678999999997 899999999999999999999885322 2222222222 12356889999999999999888754
Q ss_pred -----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|++|||||.... +.+.+++...+++|+.+...+++++.+.-. .++||++||....-
T Consensus 82 ~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~-------- 153 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER-------- 153 (257)
T ss_pred HHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc--------
Confidence 58999999997531 112233456789999998888877654321 24999999976421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+....|+.||.+.+.+++.++.+ +||+++.|+||.+.++..............+....+
T Consensus 154 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------ 217 (257)
T PRK08594 154 ----VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEERAP------------ 217 (257)
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhcCC------------
Confidence 1234568999999999999999876 489999999999987621100000011111111111
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
..-+..++|+|++++.++........|..+.+.++
T Consensus 218 ~~r~~~p~~va~~~~~l~s~~~~~~tG~~~~~dgg 252 (257)
T PRK08594 218 LRRTTTQEEVGDTAAFLFSDLSRGVTGENIHVDSG 252 (257)
T ss_pred ccccCCHHHHHHHHHHHcCcccccccceEEEECCc
Confidence 11256789999999999987655667888887654
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=183.97 Aligned_cols=229 Identities=15% Similarity=0.105 Sum_probs=165.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+..+...... .....++.++.+|++|.+++.++++.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALI---REAGGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH---HhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999654322222111 112356889999999999999888765
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||.... ....++++..+++|+.++..+++++ ++.+. ++||++||...+..
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~sS~~~~~~--------- 150 (253)
T PRK06172 81 AYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGG-GAIVNTASVAGLGA--------- 150 (253)
T ss_pred HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECchhhccC---------
Confidence 68999999997532 1234456678999999987776654 33332 49999999876542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC-hHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDM-AYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
......|+.+|.+.+.+++.++.++ |+++++++||.|-++...... ........+....+ .
T Consensus 151 ---~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~------------~ 215 (253)
T PRK06172 151 ---APKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHP------------V 215 (253)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCC------------C
Confidence 2346789999999999999998874 799999999999776322100 00111111111111 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+++.++.++........|+.+.+.++.
T Consensus 216 ~~~~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg~ 250 (253)
T PRK06172 216 GRIGKVEEVASAVLYLCSDGASFTTGHALMVDGGA 250 (253)
T ss_pred CCccCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 12567899999999999876556788888888764
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-22 Score=182.70 Aligned_cols=229 Identities=12% Similarity=0.072 Sum_probs=158.0
Q ss_pred CCCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGA--AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~--sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++|+++|||| +++||.+++++|+++|++|++..|+. +..+..++... .......+++|++|.++++++++.+
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAA---ELDSELVFRCDVASDDEINQVFADL 78 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHh---ccCCceEEECCCCCHHHHHHHHHHH
Confidence 468899999997 67999999999999999999987742 11111111111 1123467899999999999888764
Q ss_pred -----CCcEEEEcccccCch---------hhccCCchhhhhhHHHHHHHHHHHHhc--CCCCeEEEEccccccCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR---------YAMQNPHSYVHSNIAGLVTLLEACKSA--NPQPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~---------~~~~~~~~~~~~N~~g~~~l~~~~~~~--~~~~riV~~SS~~v~g~~~~~~ 228 (421)
++|++|||||+.... ...++++..+++|+.+...+.+.+... ...++||++||...+.
T Consensus 79 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~------ 152 (261)
T PRK08690 79 GKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR------ 152 (261)
T ss_pred HHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc------
Confidence 689999999986321 112234567899999988887765421 1124899999976531
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.+....|+.||.+.+.+++.++.+ +||+++.|.||.|-.+-.............+.+..+
T Consensus 153 ------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p---------- 216 (261)
T PRK08690 153 ------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNP---------- 216 (261)
T ss_pred ------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcCC----------
Confidence 1234578999999999999988765 589999999999987632110001112222222111
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..-+..++|+|++++.++........|.++.+.++.
T Consensus 217 --~~r~~~peevA~~v~~l~s~~~~~~tG~~i~vdgG~ 252 (261)
T PRK08690 217 --LRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGY 252 (261)
T ss_pred --CCCCCCHHHHHHHHHHHhCcccCCcceeEEEEcCCc
Confidence 112567899999999999876556778888887653
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-23 Score=195.64 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=136.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
..++|+|+||||+||||.++++.|+++|++|++++|+.++.+....... ....++.++.+|++|.++++++++.+
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELG---IPPDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---ccCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999996543222221111 12346889999999999999988763
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHh----cCC-CCeEEEEccccccCCCC--C--C
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANP-QPSIVWASSSSVYGLNE--N--V 227 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~-~~riV~~SS~~v~g~~~--~--~ 227 (421)
++|+||||||+... ..+.++++..+++|+.|+.++++++.+ .+. .+|||++||...+.... . .
T Consensus 80 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~ 159 (322)
T PRK07453 80 LGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPI 159 (322)
T ss_pred hCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCC
Confidence 58999999997542 123445678899999999988887753 221 24999999977643110 0 0
Q ss_pred --CCCC-----------------CCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCC
Q 043169 228 --PFSE-----------------ADRTDQPASLYAATKKAGEEIAHTYNHIY----GLSITGLRFFTVYGP 275 (421)
Q Consensus 228 --~~~e-----------------~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~~vrp~~v~G~ 275 (421)
+.+. +..+..+...|+.||++++.+++++++++ |+++++++||+|++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t 230 (322)
T PRK07453 160 PAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADT 230 (322)
T ss_pred CCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCC
Confidence 0000 01123456889999999999999988774 799999999999864
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-22 Score=183.03 Aligned_cols=226 Identities=12% Similarity=0.024 Sum_probs=160.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|+|+||||+|+||.++++.|+++|++|+++.++......... ........++.++.+|++|+++++++++++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETA--EEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHH--HHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999999999988764431111111 111112357889999999999998888764
Q ss_pred CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||..... ...++++..+++|+.++.++++++.+. +..++||++||.... .+.
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~------------~~~ 147 (256)
T PRK12743 80 RIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH------------TPL 147 (256)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc------------CCC
Confidence 689999999986431 123445678999999999999887542 222489999997532 122
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
.+...|+.+|.+.+.+++.++.+ +|++++.|+||.+.+|...... ...........+ . ..+.+
T Consensus 148 ~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~--~~~~~~~~~~~~--~----------~~~~~ 213 (256)
T PRK12743 148 PGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD--SDVKPDSRPGIP--L----------GRPGD 213 (256)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC--hHHHHHHHhcCC--C----------CCCCC
Confidence 45678999999999999998876 4899999999999987432111 111111111111 0 12457
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
++|++++++.++........|.++.+.++.
T Consensus 214 ~~dva~~~~~l~~~~~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 214 THEIASLVAWLCSEGASYTTGQSLIVDGGF 243 (256)
T ss_pred HHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 899999999988765445678888887764
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=184.18 Aligned_cols=228 Identities=16% Similarity=0.116 Sum_probs=158.1
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++|+++||||++ +||.++++.|+++|++|++.+|+. ..++..+...... ....++++|++|+++++++++.+
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~---g~~~~~~~Dv~~~~~v~~~~~~~~ 81 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEI---GCNFVSELDVTNPKSISNLFDDIK 81 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhc---CCceEEEccCCCHHHHHHHHHHHH
Confidence 5789999999997 899999999999999999988752 1111122221111 22346789999999999888764
Q ss_pred ----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||.... +...++++..+++|+.+...+++.+.... ..++||++||.....
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~--------- 152 (260)
T PRK06603 82 EKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK--------- 152 (260)
T ss_pred HHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc---------
Confidence 58999999997531 11234456789999999988888764321 124999999965421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.+....|+.||++.+.+++.++.+ +||++++|.||.+-.+-.............+....+ .
T Consensus 153 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------~ 217 (260)
T PRK06603 153 ---VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAP------------L 217 (260)
T ss_pred ---CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCC------------c
Confidence 1234567999999999999999876 489999999999977621100000111122222111 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|++++.++........|..+.+.++-
T Consensus 218 ~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgG~ 252 (260)
T PRK06603 218 KRNTTQEDVGGAAVYLFSELSKGVTGEIHYVDCGY 252 (260)
T ss_pred CCCCCHHHHHHHHHHHhCcccccCcceEEEeCCcc
Confidence 12567899999999999876556678888887653
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-22 Score=196.97 Aligned_cols=238 Identities=13% Similarity=0.065 Sum_probs=163.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh------cCCceEEEEcccCCHHHHHHH
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL------NNHGVFVIEGDINDAKLLAKL 160 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~v~~~~~Dl~d~~~~~~~ 160 (421)
..+||+||||||+|+||++++++|+++|++|++++|+.++............. ...++.++.+|++|.+++.++
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 35789999999999999999999999999999999966433222111111000 123588999999999999999
Q ss_pred hhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCC
Q 043169 161 FDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240 (421)
Q Consensus 161 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~ 240 (421)
+.++ |+||||||.... ...+....+++|+.|+.++++++++.+++ |||++||.+++... .... ......
T Consensus 157 Lggi--DiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VSSiga~~~g----~p~~--~~~sk~ 225 (576)
T PLN03209 157 LGNA--SVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVTSLGTNKVG----FPAA--ILNLFW 225 (576)
T ss_pred hcCC--CEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEccchhcccC----cccc--chhhHH
Confidence 8876 999999997532 12245567899999999999999998865 99999998763110 0000 112335
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHH
Q 043169 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 320 (421)
.|...|..+|..+.. .|+++++||||.++++..... ....+.... ......-.+..+|+|++
T Consensus 226 ~~~~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~-----------~t~~v~~~~---~d~~~gr~isreDVA~v 287 (576)
T PLN03209 226 GVLCWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYK-----------ETHNLTLSE---EDTLFGGQVSNLQVAEL 287 (576)
T ss_pred HHHHHHHHHHHHHHH----cCCCEEEEECCeecCCccccc-----------cccceeecc---ccccCCCccCHHHHHHH
Confidence 577778888776653 699999999999998743311 001111110 11111235889999999
Q ss_pred HHHhhhcCCCCCCceEEEecCCCc---cCHHHHHHHH
Q 043169 321 CLGSLDTSAGPAPYRIFNLGNTSP---VTVPKLVNIL 354 (421)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~i~~~~~---~t~~el~~~l 354 (421)
++.++.++. ...+.+|.+.++.. ..+.++++.+
T Consensus 288 VvfLasd~~-as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 288 MACMAKNRR-LSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHcCch-hccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 999988652 24578998888653 4455555444
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=186.15 Aligned_cols=189 Identities=16% Similarity=0.038 Sum_probs=135.9
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++++|+|+||||+||||.+++++|+++|++|++++|+.+..+....... .......+.++.+|++|.++++++++++
T Consensus 11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~-~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 11 IPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARIT-AATPGADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred cccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 345789999999999999999999999999999999996543322222221 1112356889999999999999888764
Q ss_pred -----CCcEEEEcccccCch--hhccCCchhhhhhHHH----HHHHHHHHHhcCCCCeEEEEcccccc--CCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR--YAMQNPHSYVHSNIAG----LVTLLEACKSANPQPSIVWASSSSVY--GLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g----~~~l~~~~~~~~~~~riV~~SS~~v~--g~~~~~~~~e 231 (421)
++|+||||||..... .+.++.+..+++|+.| +..+++.+++.+. ++||++||...+ +.....+...
T Consensus 90 ~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~-~~iV~vSS~~~~~~~~~~~~~~~~ 168 (306)
T PRK06197 90 RAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPG-SRVVTVSSGGHRIRAAIHFDDLQW 168 (306)
T ss_pred HhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCC-CEEEEECCHHHhccCCCCccccCc
Confidence 589999999986432 2345567889999999 5555555565543 499999998654 2211111111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEE--EEeccccCCC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITG--LRFFTVYGPW 276 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~--vrp~~v~G~~ 276 (421)
+. ...+...|+.||++.+.++++++++. |+++++ ++||.|.++-
T Consensus 169 ~~-~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 169 ER-RYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred cc-CCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 11 22456789999999999999998774 666654 4799998763
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-22 Score=182.58 Aligned_cols=228 Identities=12% Similarity=0.063 Sum_probs=159.9
Q ss_pred CCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++|+++||||+ ++||.+++++|+++|++|++.+|+.+. .+...+...+. ..+.++++|++|.++++++++.+
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~-~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~ 82 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA-RPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARI 82 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh-HHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHH
Confidence 3688999999998 499999999999999999999986431 11122221111 23568899999999999888765
Q ss_pred -----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|++|||||.... ..+.++++..+++|+.++.++++++...-. .++||++||.....
T Consensus 83 ~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~-------- 154 (258)
T PRK07533 83 AEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK-------- 154 (258)
T ss_pred HHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc--------
Confidence 68999999997532 123345678899999999888887743211 23899999865421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+....|+.||.+.+.+++.++.+ +||++++|+||.+.++-.............+.+..+
T Consensus 155 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------ 218 (258)
T PRK07533 155 ----VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERAP------------ 218 (258)
T ss_pred ----CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCC------------
Confidence 1134568999999999999999876 489999999999977532110001112222222111
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
..-+..++|+|.+++.++........|+.+.+.++
T Consensus 219 ~~r~~~p~dva~~~~~L~s~~~~~itG~~i~vdgg 253 (258)
T PRK07533 219 LRRLVDIDDVGAVAAFLASDAARRLTGNTLYIDGG 253 (258)
T ss_pred cCCCCCHHHHHHHHHHHhChhhccccCcEEeeCCc
Confidence 11256789999999999876545667888877654
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=183.09 Aligned_cols=233 Identities=13% Similarity=0.081 Sum_probs=162.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+++||||+|+||.+++++|+++|++|++++|+.++.+........ .....++.++.+|++|.+++.++++.+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLRE-KFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-hCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999976543332222211 112246888999999999998888764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...+++...+++|+.+...+++.+ ++.+. ++||++||...+.
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~----------- 151 (265)
T PRK07062 84 RFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAA-ASIVCVNSLLALQ----------- 151 (265)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC-cEEEEeccccccC-----------
Confidence 589999999975321 123345678899999877776665 33332 4999999987542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC--------ChHHHHHHHHHcCCCeEEEecC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD--------MAYFSFTRNILQGKPITVYRGK 302 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
+.+....|+.+|.+.+.+++.++.+ .|+++++|+||.|..+..... ..+......+.....++
T Consensus 152 -~~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 225 (265)
T PRK07062 152 -PEPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIP----- 225 (265)
T ss_pred -CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCC-----
Confidence 1134578999999999999988876 489999999999987632110 00111111111111111
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..-+..++|+|++++.++........|.++.+.++.
T Consensus 226 -----~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgg~ 261 (265)
T PRK07062 226 -----LGRLGRPDEAARALFFLASPLSSYTTGSHIDVSGGF 261 (265)
T ss_pred -----cCCCCCHHHHHHHHHHHhCchhcccccceEEEcCce
Confidence 112567899999999988765456778888887653
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=179.20 Aligned_cols=225 Identities=15% Similarity=0.102 Sum_probs=162.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
|+++||||+|+||+++++.|+++|++|++++|+.. +..............++.++.+|++|.+++.++++.+ +
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 58999999999999999999999999999999753 1111111111112356899999999999999888764 5
Q ss_pred CcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|+||||||.... ....++++.++++|+.++.++++++ ++.+. ++||++||...+.. ..
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss~~~~~~------------~~ 147 (245)
T PRK12824 81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGY-GRIINISSVNGLKG------------QF 147 (245)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-eEEEEECChhhccC------------CC
Confidence 8999999997532 1223445678999999988886554 54443 49999999876531 13
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
....|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ......+....+ ...+..+
T Consensus 148 ~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~~~------------~~~~~~~ 213 (245)
T PRK12824 148 GQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMG--PEVLQSIVNQIP------------MKRLGTP 213 (245)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC--HHHHHHHHhcCC------------CCCCCCH
Confidence 4567999999999999988765 4899999999999887432211 122222222221 1235568
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+|+++++..++........|+.+++.++..
T Consensus 214 ~~va~~~~~l~~~~~~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 214 EEIAAAVAFLVSEAAGFITGETISINGGLY 243 (245)
T ss_pred HHHHHHHHHHcCccccCccCcEEEECCCee
Confidence 999999998886654456789999988754
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=179.60 Aligned_cols=217 Identities=18% Similarity=0.178 Sum_probs=158.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-C
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-A 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~ 165 (421)
++++|+++||||+|+||.++++.|+++|++|++++|+.... ...++.++.+|++++ +.++++.. +
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~------------~~~~~~~~~~D~~~~--~~~~~~~~~~ 67 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD------------LSGNFHFLQLDLSDD--LEPLFDWVPS 67 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc------------cCCcEEEEECChHHH--HHHHHHhhCC
Confidence 36789999999999999999999999999999999854311 124688999999997 55555544 5
Q ss_pred CcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 166 ~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
+|+||||||.... ....++++..+++|+.++.++++++.. .+ .++||++||...+. ..
T Consensus 68 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~------------~~ 134 (235)
T PRK06550 68 VDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERK-SGIIINMCSIASFV------------AG 134 (235)
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhcc------------CC
Confidence 7999999996421 223345667899999999999998753 33 24899999976542 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
.....|+.+|.+.+.+++.++.++ |+++++++||.+.++..........+...+....+ ...+..
T Consensus 135 ~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 202 (235)
T PRK06550 135 GGGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARETP------------IKRWAE 202 (235)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccCC------------cCCCCC
Confidence 345679999999999999988774 89999999999988754322111122222222221 123677
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.+|+|++++.++........|.++.+.++
T Consensus 203 ~~~~a~~~~~l~s~~~~~~~g~~~~~~gg 231 (235)
T PRK06550 203 PEEVAELTLFLASGKADYMQGTIVPIDGG 231 (235)
T ss_pred HHHHHHHHHHHcChhhccCCCcEEEECCc
Confidence 89999999999976545567788887665
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=180.09 Aligned_cols=225 Identities=16% Similarity=0.144 Sum_probs=161.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||+++++.|+++|++|+++.|+........... ......++.++.+|++|.+++.++++..
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAE--IGALGGKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHH--HHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999988887543211111111 1112357889999999999999888754
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEcccc-ccCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSS-VYGLNENVPFSEAD 233 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~-v~g~~~~~~~~e~~ 233 (421)
++|+|||+||..... ...++++..+++|+.++.++++++.+. +. ++||++||.. .++
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~iss~~~~~~----------- 148 (248)
T PRK05557 81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRS-GRIINISSVVGLMG----------- 148 (248)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-eEEEEEcccccCcC-----------
Confidence 679999999975432 122344567889999999999888643 32 3899999964 333
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
......|+.+|.+.+.+++.++++ .++++++++||.+.++.... ....+........+ ...
T Consensus 149 --~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~--~~~~~~~~~~~~~~------------~~~ 212 (248)
T PRK05557 149 --NPGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDA--LPEDVKEAILAQIP------------LGR 212 (248)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccc--cChHHHHHHHhcCC------------CCC
Confidence 134577999999999999888765 48999999999987653221 11223333332221 123
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+.+++|+++++..++........|+.|++.++
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~ 244 (248)
T PRK05557 213 LGQPEEIASAVAFLASDEAAYITGQTLHVNGG 244 (248)
T ss_pred CcCHHHHHHHHHHHcCcccCCccccEEEecCC
Confidence 67899999999988876444567899999865
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=181.89 Aligned_cols=227 Identities=16% Similarity=0.132 Sum_probs=162.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||.+++++|+++|++|++++|+.+..+....... ....++.++++|++|.++++++++++
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYR---ELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999886543222211111 12346889999999999999988763
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccc-cCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSV-YGLNENVPFSEAD 233 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v-~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++++..+++|+.|+..+++++. +.+ .++||++||... ++
T Consensus 85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~----------- 152 (265)
T PRK07097 85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKG-HGKIINICSMMSELG----------- 152 (265)
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCccccCC-----------
Confidence 589999999986532 2334556789999999887777764 333 349999999643 22
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCh------HHHHHHHHHcCCCeEEEecCCC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMA------YFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
..+...|+.+|.+.+.+++.++++. ||+++.|+||.+.++....... ...+...+....+
T Consensus 153 --~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 221 (265)
T PRK07097 153 --RETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTP--------- 221 (265)
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCC---------
Confidence 2346789999999999999998874 8999999999998874321000 0001111111111
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+..++|+|.+++.++........|..+.+.++.
T Consensus 222 ---~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~ 257 (265)
T PRK07097 222 ---AARWGDPEDLAGPAVFLASDASNFVNGHILYVDGGI 257 (265)
T ss_pred ---ccCCcCHHHHHHHHHHHhCcccCCCCCCEEEECCCc
Confidence 112567899999999999875445677888777654
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=181.67 Aligned_cols=228 Identities=13% Similarity=0.058 Sum_probs=159.4
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCC--ChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 88 SGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYY--DPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 88 ~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
+++|+++||||+ ++||.+++++|+++|++|++.+|+.+.. ++...+... ....+.++++|++|+++++++++.
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~v~~~~~~ 80 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTE---PLNPSLFLPCDVQDDAQIEETFET 80 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHh---ccCcceEeecCcCCHHHHHHHHHH
Confidence 678999999986 8999999999999999999887754321 111111111 113467899999999999988876
Q ss_pred c-----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCC
Q 043169 164 V-----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPF 229 (421)
Q Consensus 164 ~-----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~ 229 (421)
+ ++|++|||||.... ..+.++++..+++|+.++..+++++.+.- ..++||++||.....
T Consensus 81 ~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~------- 153 (258)
T PRK07370 81 IKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR------- 153 (258)
T ss_pred HHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc-------
Confidence 5 68999999997531 11234567889999999888888764321 124999999975421
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 230 SEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 230 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
+.+....|+.||.+.+.+++.++.++ ||++++|.||.|-.+-.............+....+
T Consensus 154 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p----------- 217 (258)
T PRK07370 154 -----AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAP----------- 217 (258)
T ss_pred -----CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhcCC-----------
Confidence 12345789999999999999999874 79999999999987622100000111111111111
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
..-+..++|++.++..++........|+++.+.++
T Consensus 218 -~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vdgg 252 (258)
T PRK07370 218 -LRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDAG 252 (258)
T ss_pred -cCcCCCHHHHHHHHHHHhChhhccccCcEEEECCc
Confidence 11356789999999999986655667888887654
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-22 Score=184.52 Aligned_cols=165 Identities=18% Similarity=0.129 Sum_probs=129.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
.+|+|+||||+|+||.+++++|+++|++|++++|+.+.. ......++.++.+|++|.++++++++.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~---------~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 73 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDV---------AALEAEGLEAFQLDYAEPESIAALVAQVLELS 73 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH---------HHHHHCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 467999999999999999999999999999999954321 1112246889999999999998888754
Q ss_pred --CCcEEEEcccccCchh----hccCCchhhhhhHHH----HHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAG----LVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g----~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||...... ..++.+..+++|+.| +..+++.+++.+. ++||++||...+.
T Consensus 74 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~-g~iv~isS~~~~~------------ 140 (277)
T PRK05993 74 GGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQ-GRIVQCSSILGLV------------ 140 (277)
T ss_pred CCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCC-CEEEEECChhhcC------------
Confidence 5899999999754321 223345689999999 5556666666664 3999999976542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGP 275 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~ 275 (421)
+..+...|+.||++.+.+++.++.+ +|+++++|+||.+.++
T Consensus 141 ~~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 141 PMKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 2245678999999999999988755 5899999999999876
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=181.42 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=164.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+++||||+|+||.++++.|+++|++ |++++|+.+......... ......+.++.+|++|++++.++++..
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAEL---EALGAKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHH---HhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999 999998543221111111 112346788999999999999888764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++.+..+++|+.++.++++++.+ .+..++||++||...++.
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~---------- 150 (260)
T PRK06198 81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGG---------- 150 (260)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC----------
Confidence 589999999975421 12233456799999999999887743 222348999999887642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC-----CChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRP-----DMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
......|+.+|.+.|.+++.++.++ +++++.++||+++++.... ......++.......
T Consensus 151 --~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~----------- 217 (260)
T PRK06198 151 --QPFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQ----------- 217 (260)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccC-----------
Confidence 1335789999999999999988764 6999999999999874321 000111222211111
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
....+++++|++++++.++........|+++.+.++.
T Consensus 218 -~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~~~ 254 (260)
T PRK06198 218 -PFGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQSV 254 (260)
T ss_pred -CccCCcCHHHHHHHHHHHcChhhCCccCceEeECCcc
Confidence 1224678999999999998766555678888887654
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=184.22 Aligned_cols=229 Identities=15% Similarity=0.104 Sum_probs=159.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC-----CChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHH
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY-----YDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKL 160 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~ 160 (421)
.+++|+++||||+++||.++++.|+++|++|++++++... ............ ....++.++.+|++|.+++.++
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL 82 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence 3678999999999999999999999999999999876410 111111111111 1234678899999999999888
Q ss_pred hhcc-----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cC-----CCCeEEEEccccccC
Q 043169 161 FDAV-----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----AN-----PQPSIVWASSSSVYG 222 (421)
Q Consensus 161 ~~~~-----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~-----~~~riV~~SS~~v~g 222 (421)
++.+ ++|+||||||+... ....++++..+++|+.|+.++++++.. .. ..++||++||...+.
T Consensus 83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~ 162 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ 162 (286)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence 8764 68999999998542 123345678899999999888887642 11 124899999976431
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEE
Q 043169 223 LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVY 299 (421)
Q Consensus 223 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (421)
+......|+.||.+.+.+++.++.+ +||+++.|+|| +..+-. ...........+
T Consensus 163 ------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~------~~~~~~~~~~~~---- 219 (286)
T PRK07791 163 ------------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMT------ETVFAEMMAKPE---- 219 (286)
T ss_pred ------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcc------hhhHHHHHhcCc----
Confidence 1234578999999999999998876 58999999998 433211 111111111110
Q ss_pred ecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 300 RGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 300 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.....+..++|+|.+++.++........|+.+.+.++..
T Consensus 220 ------~~~~~~~~pedva~~~~~L~s~~~~~itG~~i~vdgG~~ 258 (286)
T PRK07791 220 ------EGEFDAMAPENVSPLVVWLGSAESRDVTGKVFEVEGGKI 258 (286)
T ss_pred ------ccccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEcCCce
Confidence 011125678999999999987654567788888876653
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=179.47 Aligned_cols=229 Identities=16% Similarity=0.116 Sum_probs=161.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+ ........ .....++.++.+|++|.+++.++++.+
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~---~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 78 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADEL---CGRGHRCTAVVADVRDPASVAAAIKRAKE 78 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHH---HHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999998542 11111111 112346789999999999999988764
Q ss_pred ---CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||...... ..++.+..+++|+.++.++++++.+ .+ .++||++||.....
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~----------- 146 (263)
T PRK08226 79 KEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARK-DGRIVMMSSVTGDM----------- 146 (263)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEECcHHhcc-----------
Confidence 6899999999754321 2233456799999999998888653 33 24899999965310
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC------CChHHHHHHHHHcCCCeEEEecCCC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRP------DMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
.+......|+.+|.+.+.+++.++.++ |++++.|+||.+.++-... ......+...+.++.+
T Consensus 147 ~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p--------- 217 (263)
T PRK08226 147 VADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIP--------- 217 (263)
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCC---------
Confidence 112345789999999999999998764 7999999999998872110 0001122333333222
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+..++|+|++++.++........|.++.+.++.
T Consensus 218 ---~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~dgg~ 253 (263)
T PRK08226 218 ---LRRLADPLEVGELAAFLASDESSYLTGTQNVIDGGS 253 (263)
T ss_pred ---CCCCCCHHHHHHHHHHHcCchhcCCcCceEeECCCc
Confidence 112567899999999888654445677888777653
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=182.94 Aligned_cols=232 Identities=14% Similarity=0.133 Sum_probs=161.4
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++++|+++||||+|+||.+++++|+++|++|++++|+.+.......... ....++.++.+|++|.+++.++++++
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQ---QAGPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---HhCCceEEEECCCCCHHHHHHHHHHH
Confidence 345789999999999999999999999999999999996432211111111 11245788999999999999988775
Q ss_pred -----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhc--CCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSA--NPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~--~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ....+++...+++|+.|+.++++++.+. ...++||++||...+.
T Consensus 81 ~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~----------- 149 (264)
T PRK07576 81 ADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV----------- 149 (264)
T ss_pred HHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc-----------
Confidence 58999999986432 1123345678899999999999887542 1124999999976532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChH-HHHHHHHHcCCCeEEEecCCCCccee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAY-FSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.+....|+.+|.+.+.+++.++.+ .|+++++++||.+.+........- ......+... . ...
T Consensus 150 -~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~--~----------~~~ 216 (264)
T PRK07576 150 -PMPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQS--V----------PLK 216 (264)
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhc--C----------CCC
Confidence 1234678999999999999998876 479999999999875321100000 0011111111 0 112
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+..++|+|++++.++........|..+.+.++.
T Consensus 217 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~~~gg~ 250 (264)
T PRK07576 217 RNGTKQDIANAALFLASDMASYITGVVLPVDGGW 250 (264)
T ss_pred CCCCHHHHHHHHHHHcChhhcCccCCEEEECCCc
Confidence 3567899999999999865445567777777653
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=188.80 Aligned_cols=218 Identities=18% Similarity=0.132 Sum_probs=155.1
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|+|+||||+|+||.++++.|+++|++|++++|+.+..+....+.. ....++.++.+|++|.++++++++.+
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~---~~g~~~~~v~~Dv~d~~~v~~~~~~~~ 80 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR---AAGGEALAVVADVADAEAVQAAADRAE 80 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---HcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999996543222211111 12356889999999999999888754
Q ss_pred ----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|++|||||.... ....++.+..+++|+.|+.++++.+ ++.+. ++||++||...+..
T Consensus 81 ~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~-g~iV~isS~~~~~~--------- 150 (334)
T PRK07109 81 EELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDR-GAIIQVGSALAYRS--------- 150 (334)
T ss_pred HHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEeCChhhccC---------
Confidence 68999999997532 1233445678999988876655554 44443 49999999887641
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
.+....|+.+|.+.+.+++.++.+. +|++++|+||.+.+|... . ........ ...
T Consensus 151 ---~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~------~-~~~~~~~~----------~~~ 210 (334)
T PRK07109 151 ---IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFD------W-ARSRLPVE----------PQP 210 (334)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhh------h-hhhhcccc----------ccC
Confidence 2345789999999999998887652 699999999999876211 1 11111110 011
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN 341 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~ 341 (421)
...+..++|+|++++.++..+ .+.+.++.
T Consensus 211 ~~~~~~pe~vA~~i~~~~~~~-----~~~~~vg~ 239 (334)
T PRK07109 211 VPPIYQPEVVADAILYAAEHP-----RRELWVGG 239 (334)
T ss_pred CCCCCCHHHHHHHHHHHHhCC-----CcEEEeCc
Confidence 224678999999999999865 24455654
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=180.72 Aligned_cols=225 Identities=15% Similarity=0.092 Sum_probs=160.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||.+++++|+++|++|++++|+.+.. +..... ...++.++++|++|.+++.++++.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKL----ASLRQR--FGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHH--hCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999864321 111111 1346788999999999998888764
Q ss_pred --CCcEEEEcccccCc--h---hhcc----CCchhhhhhHHHHHHHHHHHHhcC--CCCeEEEEccccccCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV--R---YAMQ----NPHSYVHSNIAGLVTLLEACKSAN--PQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~--~---~~~~----~~~~~~~~N~~g~~~l~~~~~~~~--~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||+... . ...+ .++..+++|+.++..+++++.+.- ..++||++||...+.
T Consensus 78 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------- 148 (263)
T PRK06200 78 FGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY--------- 148 (263)
T ss_pred cCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC---------
Confidence 68999999997532 1 1111 145678999999888888875321 124899999987653
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCC---------hHHHHHHHHHcCCCeEEEe
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDM---------AYFSFTRNILQGKPITVYR 300 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 300 (421)
+......|+.||.+.+.+++.++.+. +|++++|.||.+..+-..... ..+.....+....
T Consensus 149 ---~~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 219 (263)
T PRK06200 149 ---PGGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAIT------ 219 (263)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcCC------
Confidence 12345679999999999999998874 599999999999876321100 0001111111111
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcC-CCCCCceEEEecCC
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTS-AGPAPYRIFNLGNT 342 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~i~~~ 342 (421)
...-+..++|+|++++.++... .....|.++.+.++
T Consensus 220 ------p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG 256 (263)
T PRK06200 220 ------PLQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGG 256 (263)
T ss_pred ------CCCCCCCHHHHhhhhhheecccccCcccceEEEEcCc
Confidence 1123677899999999998765 55678888888765
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=207.76 Aligned_cols=238 Identities=17% Similarity=0.132 Sum_probs=169.3
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
..+.+|+|+||||+|+||.++++.|+++|++|++++|+.+..+.. ........++.++.+|++|.+++.++++.+
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~----~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAA----AAELGGPDRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHH----HHHHhccCcEEEEEecCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999965322111 111111147889999999999999888764
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+..++||++||...+.
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~---------- 563 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVN---------- 563 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccC----------
Confidence 689999999975432 1234456789999999999977764 433324999999976542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecccc-CCCCCCCChHHHHHHHHHcCCCeE----EEecCCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVY-GPWGRPDMAYFSFTRNILQGKPIT----VYRGKNH 304 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 304 (421)
+.+....|+.+|.+.+.+++.++.++ ||++++|+|+.|| ++........ .......+.... .+ ..
T Consensus 564 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~--~~~~~~~g~~~~~~~~~~---~~ 636 (681)
T PRK08324 564 --PGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWI--EARAAAYGLSEEELEEFY---RA 636 (681)
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhh--hhhhhhccCChHHHHHHH---Hh
Confidence 12346789999999999999998774 6999999999998 5532211110 001111111110 11 23
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+...+.+++++|+|++++.++........|.+|++.++..
T Consensus 637 ~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG~~ 676 (681)
T PRK08324 637 RNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDGGNA 676 (681)
T ss_pred cCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECCCch
Confidence 4456679999999999999885433356789999998764
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=179.42 Aligned_cols=228 Identities=12% Similarity=0.055 Sum_probs=158.2
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGA--AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~--sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++|+++|||| +++||.+++++|+++|++|++.+|... ..+..+..... . ....++++|++|+++++++++.+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~-~--~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAE-F--GSDLVFPCDVASDEQIDALFASLG 79 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHh-c--CCcceeeccCCCHHHHHHHHHHHH
Confidence 67899999996 679999999999999999998876321 11111111111 1 22357899999999999988764
Q ss_pred ----CCcEEEEcccccCch---------hhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR---------YAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~---------~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|++|||||..... .+.++++..+++|+.++..+++++...- ..++||++||....-
T Consensus 80 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~-------- 151 (260)
T PRK06997 80 QHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER-------- 151 (260)
T ss_pred HHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc--------
Confidence 689999999985321 1233456789999999988888875432 124899999976421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+....|+.||.+.+.+++.++.+ +||+++.|.||.|-.+-.............+....+
T Consensus 152 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------ 215 (260)
T PRK06997 152 ----VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNAP------------ 215 (260)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhcCc------------
Confidence 1234567999999999999999887 489999999999977521110000111111111111
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..-+..++|++++++.++........|.++.+.++.
T Consensus 216 ~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg~ 251 (260)
T PRK06997 216 LRRNVTIEEVGNVAAFLLSDLASGVTGEITHVDSGF 251 (260)
T ss_pred ccccCCHHHHHHHHHHHhCccccCcceeEEEEcCCh
Confidence 112567899999999999876556788888887654
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=175.85 Aligned_cols=215 Identities=18% Similarity=0.180 Sum_probs=156.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
++|+++||||+|+||.+++++|+++|++|++++|+.+.. ....++.+|++|.+++.++++.+
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 67 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD--------------FPGELFACDLADIEQTAATLAQINEIH 67 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc--------------cCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 568999999999999999999999999999999965420 11257899999999988877643
Q ss_pred CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||...... ..+++...+++|+.++.++.+++ ++.+. ++||++||...|+.
T Consensus 68 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~------------- 133 (234)
T PRK07577 68 PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQ-GRIVNICSRAIFGA------------- 133 (234)
T ss_pred CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEccccccCC-------------
Confidence 6799999999864421 23345578999999987776665 44554 49999999876641
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-hHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM-AYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.....|+.+|.+.+.+++.++.+ +|+++++++||.+.++...... ..........+..+ ...+.
T Consensus 134 ~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 201 (234)
T PRK07577 134 LDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIP------------MRRLG 201 (234)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcCC------------CCCCc
Confidence 23578999999999999988765 4899999999999887422110 00111111222111 11244
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.++|+|++++.++..+.....|..+.+.++.
T Consensus 202 ~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~~ 232 (234)
T PRK07577 202 TPEEVAAAIAFLLSDDAGFITGQVLGVDGGG 232 (234)
T ss_pred CHHHHHHHHHHHhCcccCCccceEEEecCCc
Confidence 6899999999999876445678888887654
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=173.40 Aligned_cols=239 Identities=17% Similarity=0.192 Sum_probs=190.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+.+|-.+-|.|||||+|+.++.+|++.|-+|++--|-.+..- ...+. ...-.++.++.-|+.|+++++++++..
T Consensus 58 S~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~---r~lkv-mGdLGQvl~~~fd~~DedSIr~vvk~s-- 131 (391)
T KOG2865|consen 58 SVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDP---RHLKV-MGDLGQVLFMKFDLRDEDSIRAVVKHS-- 131 (391)
T ss_pred cccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccch---hheee-cccccceeeeccCCCCHHHHHHHHHhC--
Confidence 357788889999999999999999999999999988543221 11111 112367899999999999999999998
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK 246 (421)
.+|||+.|-- .+...-.+.++|+.+...+.+.|++.|+. |+|++|+...- ....+-|-.+|
T Consensus 132 NVVINLIGrd----~eTknf~f~Dvn~~~aerlAricke~GVe-rfIhvS~Lgan--------------v~s~Sr~LrsK 192 (391)
T KOG2865|consen 132 NVVINLIGRD----YETKNFSFEDVNVHIAERLARICKEAGVE-RFIHVSCLGAN--------------VKSPSRMLRSK 192 (391)
T ss_pred cEEEEeeccc----cccCCcccccccchHHHHHHHHHHhhChh-heeehhhcccc--------------ccChHHHHHhh
Confidence 9999999852 22334467789999999999999999987 99999997631 13346799999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
.++|..+++.-- ..+|+||..|||..++ ++..+.....+-+.++++. ...+..-..++|-|+|.+|+.++.
T Consensus 193 ~~gE~aVrdafP----eAtIirPa~iyG~eDr---fln~ya~~~rk~~~~pL~~--~GekT~K~PVyV~DVaa~IvnAvk 263 (391)
T KOG2865|consen 193 AAGEEAVRDAFP----EATIIRPADIYGTEDR---FLNYYASFWRKFGFLPLIG--KGEKTVKQPVYVVDVAAAIVNAVK 263 (391)
T ss_pred hhhHHHHHhhCC----cceeechhhhcccchh---HHHHHHHHHHhcCceeeec--CCcceeeccEEEehHHHHHHHhcc
Confidence 999999988543 3589999999997554 4555555555567777774 233566778999999999999999
Q ss_pred cCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCc
Q 043169 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVK 361 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~ 361 (421)
++ ...|++|...++.-+...|+++.+-+....-
T Consensus 264 Dp--~s~Gktye~vGP~~yql~eLvd~my~~~~~~ 296 (391)
T KOG2865|consen 264 DP--DSMGKTYEFVGPDRYQLSELVDIMYDMAREW 296 (391)
T ss_pred Cc--cccCceeeecCCchhhHHHHHHHHHHHHhhc
Confidence 98 6789999999999999999999998877653
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=184.32 Aligned_cols=198 Identities=17% Similarity=0.070 Sum_probs=147.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||.+++++|+++|++|++++|+.+..+ ..... . ..+.++.+|++|++++.++++.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~----~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAK----ETAAE-L--GLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHHH-h--ccceEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998543211 11111 1 25788999999999988888764
Q ss_pred --CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|++|||||...... ..++.+..+++|+.|+.++++.+. +.+. ++||++||...+.
T Consensus 76 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------------ 142 (273)
T PRK07825 76 LGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGR-GHVVNVASLAGKI------------ 142 (273)
T ss_pred cCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEEcCccccC------------
Confidence 5799999999864321 222345689999999888777663 4443 4999999987542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
..+....|+.||.+.+.+++.++.+ .|+++++|+||.+.++... +.. ......+
T Consensus 143 ~~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~--------------~~~---------~~~~~~~ 199 (273)
T PRK07825 143 PVPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA--------------GTG---------GAKGFKN 199 (273)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc--------------ccc---------cccCCCC
Confidence 2245678999999999888888766 4899999999988665211 100 0112247
Q ss_pred ccHHHHHHHHHHhhhcC
Q 043169 312 TYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~ 328 (421)
+.++|+|++++.++.++
T Consensus 200 ~~~~~va~~~~~~l~~~ 216 (273)
T PRK07825 200 VEPEDVAAAIVGTVAKP 216 (273)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 88999999999999876
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=181.12 Aligned_cols=228 Identities=10% Similarity=0.039 Sum_probs=159.2
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++|+++||||+ ++||.++++.|+++|++|++.+|+.. ..+..++...+. ..+..+++|++|+++++++++.+
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~ 83 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAEL---GAFVAGHCDVTDEASIDAVFETLE 83 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHhc---CCceEEecCCCCHHHHHHHHHHHH
Confidence 578999999997 89999999999999999998887421 111112221111 23567899999999999988764
Q ss_pred ----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||+... ..+.++++..+++|+.++..+++++.+.-. .++||++||.+...
T Consensus 84 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~--------- 154 (272)
T PRK08159 84 KKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK--------- 154 (272)
T ss_pred HhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc---------
Confidence 58999999997531 123345677899999999999988754321 24999999865421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.+....|+.||.+.+.+++.++.+ +||++++|.||.+..+-....... .......... .+ .
T Consensus 155 ---~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~-~~~~~~~~~~-~p----------~ 219 (272)
T PRK08159 155 ---VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDF-RYILKWNEYN-AP----------L 219 (272)
T ss_pred ---CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcc-hHHHHHHHhC-Cc----------c
Confidence 1234577999999999999999887 479999999999976421100000 0011111100 11 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|++++.++........|..+.+.++.
T Consensus 220 ~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 220 RRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSGY 254 (272)
T ss_pred cccCCHHHHHHHHHHHhCccccCccceEEEECCCc
Confidence 12567899999999999866556778888888764
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=178.57 Aligned_cols=228 Identities=17% Similarity=0.106 Sum_probs=157.3
Q ss_pred CCCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGA--AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~--sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.+++|+++|||| +++||.+++++|+++|++|++++|+.. .+..+..... . ...+.++++|++|+++++++++.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~--~~~~~~~~~~-~-~~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRA--LRLTERIAKR-L-PEPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccc--hhHHHHHHHh-c-CCCCcEEeCCCCCHHHHHHHHHHH
Confidence 367899999999 899999999999999999999988531 1111222111 1 236778999999999999888754
Q ss_pred -----CCcEEEEcccccCc-----hh---hccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV-----RY---AMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~-----~~---~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|++|||||+... .. ..++.+..+++|+.++.++++++...-. .++||++|+....
T Consensus 80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~--------- 150 (256)
T PRK07889 80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV--------- 150 (256)
T ss_pred HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc---------
Confidence 68999999998632 11 2233456799999998888887753211 2389998865321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
..+.+..|+.||.+.+.+++.++.+ +||++++|+||.+..+-.............+.+..+.
T Consensus 151 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----------- 215 (256)
T PRK07889 151 ----AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPL----------- 215 (256)
T ss_pred ----cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCcc-----------
Confidence 1134567999999999999999877 4899999999999876321100001111111111111
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.+.+..++|+|++++.++........|.++.+.++
T Consensus 216 ~~~~~~p~evA~~v~~l~s~~~~~~tG~~i~vdgg 250 (256)
T PRK07889 216 GWDVKDPTPVARAVVALLSDWFPATTGEIVHVDGG 250 (256)
T ss_pred ccccCCHHHHHHHHHHHhCcccccccceEEEEcCc
Confidence 01256789999999999987655567888877654
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-21 Score=176.07 Aligned_cols=225 Identities=16% Similarity=0.100 Sum_probs=158.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
++|+++||||+|+||++++++|+++|++|++..+..... ..+...........+.++.+|++|.+++.++++++
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPR--RVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEV 79 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHH--HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999998865432111 11111111112346778899999999998888754
Q ss_pred -CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||.... ....++++..+++|+.++..+++++ ++.+. ++||++||..... .
T Consensus 80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~------------~ 146 (246)
T PRK12938 80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGW-GRIINISSVNGQK------------G 146 (246)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEEechhccC------------C
Confidence 57999999998542 2234456778999999977766665 34443 4999999975421 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
......|+.+|.+.+.+++.++++ .|+++++|+||.+.+|.... ..+..+..+....+ ...+.
T Consensus 147 ~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~--~~~~~~~~~~~~~~------------~~~~~ 212 (246)
T PRK12938 147 QFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA--IRPDVLEKIVATIP------------VRRLG 212 (246)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhh--cChHHHHHHHhcCC------------ccCCc
Confidence 234678999999999999888765 48999999999998874321 11223333322221 12255
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.++|++.+++.++........|..+.+.++
T Consensus 213 ~~~~v~~~~~~l~~~~~~~~~g~~~~~~~g 242 (246)
T PRK12938 213 SPDEIGSIVAWLASEESGFSTGADFSLNGG 242 (246)
T ss_pred CHHHHHHHHHHHcCcccCCccCcEEEECCc
Confidence 689999999998876655667888888765
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=180.15 Aligned_cols=198 Identities=16% Similarity=0.135 Sum_probs=145.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|+|+||||+|+||.++++.|+++|++|++++|+.+.. ...........++.++.+|++|.+++.++++.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDAL----QAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999999864321 111111111127889999999999998888764
Q ss_pred CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHH----HHhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEA----CKSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~----~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++++..+++|+.|+.+++++ +++.+. ++||++||...+. +
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~-~~iv~isS~~~~~------------~ 144 (257)
T PRK07024 78 LPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARR-GTLVGIASVAGVR------------G 144 (257)
T ss_pred CCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCC-CEEEEEechhhcC------------C
Confidence 479999999975421 12234567899999998887774 445553 4999999976531 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.+....|+.||.+.+.+++.++.+ +|+++++++||.+.++.... .. + . ...++
T Consensus 145 ~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~--------------~~---~---~----~~~~~ 200 (257)
T PRK07024 145 LPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH--------------NP---Y---P----MPFLM 200 (257)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc--------------CC---C---C----CCCcc
Confidence 234567999999999999998754 58999999999998872211 00 0 0 00135
Q ss_pred cHHHHHHHHHHhhhcC
Q 043169 313 YIDDIVKGCLGSLDTS 328 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~ 328 (421)
.++|+|+.++.++...
T Consensus 201 ~~~~~a~~~~~~l~~~ 216 (257)
T PRK07024 201 DADRFAARAARAIARG 216 (257)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 7899999999999765
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=178.54 Aligned_cols=229 Identities=15% Similarity=0.095 Sum_probs=163.0
Q ss_pred CCCCEEEEEcCCC-hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAG-FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+++||||+| +||.++++.|+++|++|++.+|+.+..+......... ....++.++++|+++++++.++++.+
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAE-LGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-cCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 5689999999997 8999999999999999999988654332222211111 12246889999999999999888764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...+++...+++|+.++..+++++.+ .+..++||++||...+.
T Consensus 94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~----------- 162 (262)
T PRK07831 94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR----------- 162 (262)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC-----------
Confidence 689999999975321 12344567889999999888887643 22134899999865431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+..+...|+.+|.+.+.+++.++.+ +|+++++|+||.+..|...... .......+....+. .-
T Consensus 163 -~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~-~~~~~~~~~~~~~~------------~r 228 (262)
T PRK07831 163 -AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT-SAELLDELAAREAF------------GR 228 (262)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc-CHHHHHHHHhcCCC------------CC
Confidence 1235678999999999999999877 5899999999999987432110 11222333332221 12
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+..++|+|++++.++........|+++.+.++
T Consensus 229 ~~~p~~va~~~~~l~s~~~~~itG~~i~v~~~ 260 (262)
T PRK07831 229 AAEPWEVANVIAFLASDYSSYLTGEVVSVSSQ 260 (262)
T ss_pred CcCHHHHHHHHHHHcCchhcCcCCceEEeCCC
Confidence 55679999999999887655667888877653
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-21 Score=176.26 Aligned_cols=226 Identities=15% Similarity=0.061 Sum_probs=159.4
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCC-------ChhHHHHHHHh-hcCCceEEEEcccCCHHHH
Q 043169 88 SGGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFNNYY-------DPSLKKARKAL-LNNHGVFVIEGDINDAKLL 157 (421)
Q Consensus 88 ~~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~~~~-------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~ 157 (421)
+++|+||||||+| +||.+++++|+++|++|++++|+.... +.......... ....++.++.+|++|.+++
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 5789999999995 899999999999999999999873211 01100011111 1234689999999999999
Q ss_pred HHHhhcc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc---CCCCeEEEEccccccCCCC
Q 043169 158 AKLFDAV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA---NPQPSIVWASSSSVYGLNE 225 (421)
Q Consensus 158 ~~~~~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~---~~~~riV~~SS~~v~g~~~ 225 (421)
.++++.+ ++|+||||||..... ...++++..+++|+.|+.++++++.+. ...++||++||...++
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~--- 159 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG--- 159 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC---
Confidence 8888764 589999999975321 122345677999999999999988543 1224999999987653
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecC
Q 043169 226 NVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGK 302 (421)
Q Consensus 226 ~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
+......|+.+|.+.+.+++.++.+ .|++++.++||.+..+.... .....+....+
T Consensus 160 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~-----~~~~~~~~~~~------- 218 (256)
T PRK12748 160 ---------PMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE-----ELKHHLVPKFP------- 218 (256)
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh-----hHHHhhhccCC-------
Confidence 1234578999999999999998776 48999999999887763221 11111111110
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
...+..++|+|+++..++........|.++++.++
T Consensus 219 -----~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 253 (256)
T PRK12748 219 -----QGRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGG 253 (256)
T ss_pred -----CCCCcCHHHHHHHHHHHhCcccccccCCEEEecCC
Confidence 01134579999999988876544566889988765
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=179.43 Aligned_cols=209 Identities=17% Similarity=0.083 Sum_probs=149.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
|+|+||||+|+||++++++|+++|++|++++|+.+..+....... ....++.++++|++|.+++.++++.+ +
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 77 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLR---EAGGDGFYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999986543222222111 12356889999999999998888753 5
Q ss_pred CcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|+||||||...... ..++.+..+++|+.++.++.+.+ ++.+. ++||++||...+. +..
T Consensus 78 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~vsS~~~~~------------~~~ 144 (270)
T PRK05650 78 IDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKS-GRIVNIASMAGLM------------QGP 144 (270)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC-CEEEEECChhhcC------------CCC
Confidence 899999999864321 22334567899999877766654 45553 4999999987653 223
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-hHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM-AYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
....|+.+|++.+.+++.++.+ .|+++++++||.+.++...... ..+.....+.. .....+++
T Consensus 145 ~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 211 (270)
T PRK05650 145 AMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGK-------------LLEKSPIT 211 (270)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHH-------------HhhcCCCC
Confidence 4678999999999999998877 4899999999999887432110 00111110000 00113578
Q ss_pred HHHHHHHHHHhhhcC
Q 043169 314 IDDIVKGCLGSLDTS 328 (421)
Q Consensus 314 v~Dva~a~~~~l~~~ 328 (421)
++|+|++++.+++..
T Consensus 212 ~~~vA~~i~~~l~~~ 226 (270)
T PRK05650 212 AADIADYIYQQVAKG 226 (270)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999999865
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=181.16 Aligned_cols=221 Identities=15% Similarity=0.108 Sum_probs=160.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||.++++.|+++|++|++++++.+... ..++.++.+|++|+++++++++..
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~------------~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ------------HENYQFVPTDVSSAEEVNHTVAEIIEK 74 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998654321 236788999999999999888764
Q ss_pred --CCcEEEEcccccCch-------------hhccCCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccccCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR-------------YAMQNPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSVYGLNEN 226 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~-------------~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v~g~~~~ 226 (421)
++|+||||||..... ...++++..+++|+.++.++++++.+.. ..++||++||...+.
T Consensus 75 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---- 150 (266)
T PRK06171 75 FGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE---- 150 (266)
T ss_pred cCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC----
Confidence 689999999975321 1233455689999999999998886431 124899999986542
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEecccc-CCCCCCCC----------hHHHHHHHHHc
Q 043169 227 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVY-GPWGRPDM----------AYFSFTRNILQ 292 (421)
Q Consensus 227 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~-G~~~~~~~----------~~~~~~~~~~~ 292 (421)
.......|+.+|.+.+.+++.++.+ +|+++++|+||.+. .+...... ....+...+.+
T Consensus 151 --------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (266)
T PRK06171 151 --------GSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYTK 222 (266)
T ss_pred --------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhcc
Confidence 1234578999999999999999876 48999999999985 22111000 00111111111
Q ss_pred CCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 293 GKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.... ...-+..++|+|.++..++........|.++++.++
T Consensus 223 ~~~~----------p~~r~~~~~eva~~~~fl~s~~~~~itG~~i~vdgg 262 (266)
T PRK06171 223 TSTI----------PLGRSGKLSEVADLVCYLLSDRASYITGVTTNIAGG 262 (266)
T ss_pred cccc----------cCCCCCCHHHhhhheeeeeccccccceeeEEEecCc
Confidence 0011 112356789999999999987655677888888765
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=187.53 Aligned_cols=210 Identities=16% Similarity=0.147 Sum_probs=153.2
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|+|+||||+|+||.+++++|+++|++|++++|+.+..++..+... ....++.++.+|++|.++++++++.+
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~---~~g~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECR---ALGAEVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999996543322222111 12356788999999999999888653
Q ss_pred ----CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|++|||||...... ..++.+..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 80 ~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~-g~iV~isS~~~~~---------- 148 (330)
T PRK06139 80 SFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGH-GIFINMISLGGFA---------- 148 (330)
T ss_pred HhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCC-CEEEEEcChhhcC----------
Confidence 6899999999754321 22344578999999988877776 34432 4999999987652
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.+....|+.||.+.+.+++.++.+ .||+++.|+||.+.+|...... .. .+.. ....
T Consensus 149 --~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~-------~~-~~~~---------~~~~ 209 (330)
T PRK06139 149 --AQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGA-------NY-TGRR---------LTPP 209 (330)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccc-------cc-cccc---------ccCC
Confidence 1234578999999999999888876 2799999999999988432110 00 0000 0112
Q ss_pred eecccHHHHHHHHHHhhhcC
Q 043169 309 RDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~ 328 (421)
..+.+++|+|++++.+++.+
T Consensus 210 ~~~~~pe~vA~~il~~~~~~ 229 (330)
T PRK06139 210 PPVYDPRRVAKAVVRLADRP 229 (330)
T ss_pred CCCCCHHHHHHHHHHHHhCC
Confidence 23678999999999999876
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=180.71 Aligned_cols=210 Identities=18% Similarity=0.138 Sum_probs=151.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+++||||||+|+||.++++.|+++|++|++++|+....+...... .....++.++.+|++|.+++.++++.+
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l---~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQEL---ADHGGEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999999998643222111111 112346889999999999999888765
Q ss_pred CCcEEEEcccccCchh-----hccCCchhhhhhHHHHHHHHHHHHh---cCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVRY-----AMQNPHSYVHSNIAGLVTLLEACKS---ANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~-----~~~~~~~~~~~N~~g~~~l~~~~~~---~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||...... ..+++...+++|+.++.++++.+.+ .+ .++||++||...+. +.
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~iv~~sS~~~~~------------~~ 144 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKAS-RGQIVVVSSLAGLT------------GV 144 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCEEEEEecccccC------------CC
Confidence 6899999999754321 1222456799999999999998853 22 24899999987653 12
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
.+...|+.+|.+.+.+++.++.+ .++++++++||.+.++.... ... ..+.+... .+.....+++
T Consensus 145 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~------~~~--~~~~~~~~-----~~~~~~~~~~ 211 (263)
T PRK06181 145 PTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR------ALD--GDGKPLGK-----SPMQESKIMS 211 (263)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh------hcc--cccccccc-----ccccccCCCC
Confidence 34678999999999999888765 48999999999998763221 000 01111110 1122237899
Q ss_pred HHHHHHHHHHhhhcC
Q 043169 314 IDDIVKGCLGSLDTS 328 (421)
Q Consensus 314 v~Dva~a~~~~l~~~ 328 (421)
++|+|++++.+++..
T Consensus 212 ~~dva~~i~~~~~~~ 226 (263)
T PRK06181 212 AEECAEAILPAIARR 226 (263)
T ss_pred HHHHHHHHHHHhhCC
Confidence 999999999999754
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=182.45 Aligned_cols=224 Identities=17% Similarity=0.110 Sum_probs=155.9
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.++++|+++||||+|+||.+++++|+++|++|++.+++.... .+...... ....++.++.+|++|.+++.++++.+
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~---~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~ 84 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALD---ASDVLDEIRAAGAKAVAVAGDISQRATADELVATA 84 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhH---HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 347899999999999999999999999999999998753211 11111111 12356889999999999998888753
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc--------C--CCCeEEEEccccccCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA--------N--PQPSIVWASSSSVYGLNEN 226 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~--------~--~~~riV~~SS~~v~g~~~~ 226 (421)
++|+||||||..... .+.+++...+++|+.|+.++++++... + ..++||++||...+.
T Consensus 85 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 160 (306)
T PRK07792 85 VGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLV---- 160 (306)
T ss_pred HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccccc----
Confidence 689999999986532 234456678999999999999876421 0 124899999976542
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCC
Q 043169 227 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 227 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
.......|+.+|.+.+.+++.++.+ +||++++|.||. ..+ .. ..+...... ..
T Consensus 161 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~-~t~-~~---------~~~~~~~~~-~~---- 216 (306)
T PRK07792 161 --------GPVGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA-RTA-MT---------ADVFGDAPD-VE---- 216 (306)
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC-CCc-hh---------hhhccccch-hh----
Confidence 1134567999999999999998876 589999999973 211 10 011110000 00
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
......+.++|++.++..++........|++|.+.++
T Consensus 217 --~~~~~~~~pe~va~~v~~L~s~~~~~~tG~~~~v~gg 253 (306)
T PRK07792 217 --AGGIDPLSPEHVVPLVQFLASPAAAEVNGQVFIVYGP 253 (306)
T ss_pred --hhccCCCCHHHHHHHHHHHcCccccCCCCCEEEEcCC
Confidence 0112345799999999988876544566778877654
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=177.42 Aligned_cols=220 Identities=17% Similarity=0.119 Sum_probs=159.2
Q ss_pred EEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-CCcEEEEc
Q 043169 94 LVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-AFTHVMHL 172 (421)
Q Consensus 94 lITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d~vi~~ 172 (421)
+||||+|+||++++++|+++|++|++++|+.+..+ ..........+++++.+|++|.+++.++++.. ++|+||||
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLA----AAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 59999999999999999999999999999643211 11111112356889999999999999999876 57999999
Q ss_pred ccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 043169 173 AAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 173 Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
||..... ...++.+..+++|+.++.+++++....+. ++||++||...+. +.++...|+.+|.+
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-g~iv~~ss~~~~~------------~~~~~~~Y~~sK~a 143 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPG-GSLTFVSGFAAVR------------PSASGVLQGAINAA 143 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCC-eEEEEECchhhcC------------CCCcchHHHHHHHH
Confidence 9975431 12345667899999999999996655443 4999999988763 22456789999999
Q ss_pred HHHHHHHHHHHh-CCcEEEEEeccccCCCCCC--CChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhh
Q 043169 249 GEEIAHTYNHIY-GLSITGLRFFTVYGPWGRP--DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325 (421)
Q Consensus 249 ~e~~~~~~~~~~-gi~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 325 (421)
.+.+++.++.+. ++++++++||.+.++.... ......+........+. ..+..++|+|++++.++
T Consensus 144 ~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~dva~~~~~l~ 211 (230)
T PRK07041 144 LEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPA------------RRVGQPEDVANAILFLA 211 (230)
T ss_pred HHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCC------------CCCcCHHHHHHHHHHHh
Confidence 999999998774 6999999999987652110 00001122222221110 12456899999999999
Q ss_pred hcCCCCCCceEEEecCCCc
Q 043169 326 DTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~ 344 (421)
... ...|+.|++.++.+
T Consensus 212 ~~~--~~~G~~~~v~gg~~ 228 (230)
T PRK07041 212 ANG--FTTGSTVLVDGGHA 228 (230)
T ss_pred cCC--CcCCcEEEeCCCee
Confidence 754 46689999988764
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-21 Score=175.07 Aligned_cols=225 Identities=16% Similarity=0.123 Sum_probs=153.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEe-CCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLD-NFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
++++||||+|+||.+++++|+++|++|+++. |+.+...+. .........++.++++|++|++++.++++.+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 78 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEV---VNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDE 78 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHH---HHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 5899999999999999999999999998754 432211111 1111112346888999999999999988865
Q ss_pred CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHHhc------CCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACKSA------NPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~~------~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++.+..+++|+.++.++++++.+. +..++||++||...+...
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~--------- 149 (247)
T PRK09730 79 PLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA--------- 149 (247)
T ss_pred CCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC---------
Confidence 579999999975321 122334578999999998887766432 112479999997643210
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+ .....|+.+|.+.+.+++.++.+ .|++++++|||.+++|....... +.....+....+.. -
T Consensus 150 -~-~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~ 214 (247)
T PRK09730 150 -P-GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGE-PGRVDRVKSNIPMQ------------R 214 (247)
T ss_pred -C-CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCC-HHHHHHHHhcCCCC------------C
Confidence 1 12346999999999999988765 48999999999999985332111 22222232222211 1
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
..+++|+|++++.++........|..|.+.++
T Consensus 215 ~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g~ 246 (247)
T PRK09730 215 GGQPEEVAQAIVWLLSDKASYVTGSFIDLAGG 246 (247)
T ss_pred CcCHHHHHHHHHhhcChhhcCccCcEEecCCC
Confidence 23689999999998876544466778877654
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=176.10 Aligned_cols=188 Identities=14% Similarity=0.114 Sum_probs=140.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
..+|.|+||||.++.|..+|++|.++|+.|++.|..++..+. .......++...++.|++++++++++.+-+
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~-----L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~ 101 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAES-----LRGETKSPRLRTLQLDVTKPESVKEAAQWVKKH 101 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHH-----HhhhhcCCcceeEeeccCCHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999954332211 111122688999999999999999888654
Q ss_pred ----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHH----HHHHHhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTL----LEACKSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l----~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
..-.||||||+... ....++++..+++|+.|+..+ +..++++. +|||++||...-
T Consensus 102 l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar--GRvVnvsS~~GR---------- 169 (322)
T KOG1610|consen 102 LGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR--GRVVNVSSVLGR---------- 169 (322)
T ss_pred cccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc--CeEEEecccccC----------
Confidence 46779999997543 224567788999999995554 44556665 399999997641
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKP 295 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~ 295 (421)
.+.+...+|+.||++.|.+..+++++ +||+|.+|.||..-.+-.+ ...+...++.+....+
T Consensus 170 --~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~-~~~~~~~~~~~w~~l~ 233 (322)
T KOG1610|consen 170 --VALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN-PEKLEKRMKEIWERLP 233 (322)
T ss_pred --ccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC-hHHHHHHHHHHHhcCC
Confidence 23345789999999999999999988 6999999999943333222 2334455555655554
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=178.51 Aligned_cols=220 Identities=16% Similarity=0.181 Sum_probs=154.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChh---HHHHHHH-hhcCCceEEEEcccCCHHHHHHHhh
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPS---LKKARKA-LLNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
++++|+++||||+|+||.++++.|+++|++|++++|+.+..... ....... .....++.++.+|++|.+++.++++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 36789999999999999999999999999999999976543211 1111111 1123468899999999999999887
Q ss_pred cc-----CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHhc---CCCCeEEEEccccccCCCCCCCCC
Q 043169 163 AV-----AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKSA---NPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 163 ~~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~---~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
.. ++|+||||||...... ..++.+..+++|+.++.++++++... ...++||++||......
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------- 155 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP------- 155 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc-------
Confidence 65 7899999999754321 22345678999999999999988532 11238999998643210
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecc-ccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFT-VYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~-v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
....+...|+.||.+.+.+++.++.++ |++++.|.||. +-.+ +.+.+..+. .
T Consensus 156 ---~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~----------~~~~~~~~~-----------~ 211 (273)
T PRK08278 156 ---KWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATA----------AVRNLLGGD-----------E 211 (273)
T ss_pred ---cccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccH----------HHHhccccc-----------c
Confidence 001456789999999999999998774 89999999984 4332 111111111 0
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEE
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIF 337 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~ 337 (421)
....+..++|+|++++.++........|..+
T Consensus 212 ~~~~~~~p~~va~~~~~l~~~~~~~~~G~~~ 242 (273)
T PRK08278 212 AMRRSRTPEIMADAAYEILSRPAREFTGNFL 242 (273)
T ss_pred cccccCCHHHHHHHHHHHhcCccccceeEEE
Confidence 1123567899999999999876444445433
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=182.67 Aligned_cols=216 Identities=17% Similarity=0.165 Sum_probs=153.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+|+||||+|+||.++++.|+++|++|++++|+.+.. ............+..+.+|++|.+++.++++++
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l----~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAEL----AALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVE 81 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999864322 111111112345667789999999999888764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC--CCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN--PQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++.+..+++|+.|+.++++++.... ..++||++||...+. .
T Consensus 82 ~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~------------~ 149 (296)
T PRK05872 82 RFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA------------A 149 (296)
T ss_pred HcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC------------C
Confidence 689999999985431 1233456789999999999998875321 124899999987653 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.+....|+.||.+.+.+++.++.+ .|+++++++||.+.++..............+....+.. ...++
T Consensus 150 ~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~p----------~~~~~ 219 (296)
T PRK05872 150 APGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPWP----------LRRTT 219 (296)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCCCc----------ccCCC
Confidence 234578999999999999988765 58999999999998763221100001111122111111 12356
Q ss_pred cHHHHHHHHHHhhhcC
Q 043169 313 YIDDIVKGCLGSLDTS 328 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~ 328 (421)
.++|+|++++.++...
T Consensus 220 ~~~~va~~i~~~~~~~ 235 (296)
T PRK05872 220 SVEKCAAAFVDGIERR 235 (296)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 7999999999999765
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-21 Score=174.66 Aligned_cols=224 Identities=11% Similarity=0.025 Sum_probs=157.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++++++||||+|+||+++++.|+++|+.|++.+|+.+.. ...... ...++.++.+|++|.+++.++++++
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~----~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKL----EALAAE--LGERVKIFPANLSDRDEVKALGQKAEA 76 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHH----HHHHHH--hCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999998887743211 111111 1346889999999999999887653
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++++..+++|+.++.++++++.+ .+. ++||++||...+..
T Consensus 77 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~---------- 145 (245)
T PRK12936 77 DLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRY-GRIINITSVVGVTG---------- 145 (245)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC-CEEEEECCHHhCcC----------
Confidence 589999999975421 12345667899999999988887642 333 48999999654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
.+....|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ........... ....
T Consensus 146 --~~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~--~~~~~~~~~~~------------~~~~ 209 (245)
T PRK12936 146 --NPGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLN--DKQKEAIMGAI------------PMKR 209 (245)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccC--hHHHHHHhcCC------------CCCC
Confidence 123467999999999888887765 4899999999988765322110 11111111111 1122
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+.+++|++++++.++........|+.+++.++.
T Consensus 210 ~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK12936 210 MGTGAEVASAVAYLASSEAAYVTGQTIHVNGGM 242 (245)
T ss_pred CcCHHHHHHHHHHHcCccccCcCCCEEEECCCc
Confidence 567899999999888665334578899988764
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=179.97 Aligned_cols=227 Identities=12% Similarity=0.066 Sum_probs=161.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+|+||||+|+||+++++.|+++|++|++++|+.+..+...... .....++.++.+|+++.+++.+++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEI---EAEGGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999654322211111 112346889999999999999988764
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cC-------CCCeEEEEccccccCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----AN-------PQPSIVWASSSSVYGLNENV 227 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~-------~~~riV~~SS~~v~g~~~~~ 227 (421)
++|+||||||..... ...++++.++++|+.++.++++++.. .. ..+++|++||...+.
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~----- 158 (258)
T PRK06949 84 AGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR----- 158 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC-----
Confidence 579999999975321 12344667899999999988887642 21 124899999987652
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 228 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
+.....+|+.+|.+.+.+++.++.+ .|+++++|+||.|++|....... ......+.+.-+
T Consensus 159 -------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~-~~~~~~~~~~~~--------- 221 (258)
T PRK06949 159 -------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWE-TEQGQKLVSMLP--------- 221 (258)
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccC-hHHHHHHHhcCC---------
Confidence 1234578999999999999998876 48999999999999885331110 011111111111
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
...+...+|+++++..++........|....+.++
T Consensus 222 ---~~~~~~p~~~~~~~~~l~~~~~~~~~G~~i~~dgg 256 (258)
T PRK06949 222 ---RKRVGKPEDLDGLLLLLAADESQFINGAIISADDG 256 (258)
T ss_pred ---CCCCcCHHHHHHHHHHHhChhhcCCCCcEEEeCCC
Confidence 11355679999999999886655567777766554
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=170.40 Aligned_cols=183 Identities=26% Similarity=0.341 Sum_probs=141.9
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEEc
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHL 172 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~~ 172 (421)
|+|+||||++|+.++++|+++|++|++++|+.++. .. ..+++++.+|+.|++++.++++++ |+|||+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~---------~~--~~~~~~~~~d~~d~~~~~~al~~~--d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKA---------ED--SPGVEIIQGDLFDPDSVKAALKGA--DAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGH---------HH--CTTEEEEESCTTCHHHHHHHHTTS--SEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhc---------cc--ccccccceeeehhhhhhhhhhhhc--chhhhh
Confidence 79999999999999999999999999999965311 11 689999999999999999999987 999999
Q ss_pred ccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 043169 173 AAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEI 252 (421)
Q Consensus 173 Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~ 252 (421)
+|.... +...+.++++++++++++ ++|++||..+|+........... .....|...|..+|.+
T Consensus 68 ~~~~~~-------------~~~~~~~~~~a~~~~~~~-~~v~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~e~~ 130 (183)
T PF13460_consen 68 AGPPPK-------------DVDAAKNIIEAAKKAGVK-RVVYLSSAGVYRDPPGLFSDEDK---PIFPEYARDKREAEEA 130 (183)
T ss_dssp CHSTTT-------------HHHHHHHHHHHHHHTTSS-EEEEEEETTGTTTCTSEEEGGTC---GGGHHHHHHHHHHHHH
T ss_pred hhhhcc-------------cccccccccccccccccc-cceeeeccccCCCCCcccccccc---cchhhhHHHHHHHHHH
Confidence 975321 277789999999999976 99999999998743322111111 1125688889888877
Q ss_pred HHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhc
Q 043169 253 AHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327 (421)
Q Consensus 253 ~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 327 (421)
+++ .+++++++||+.+||+... ...+.. ..+....++|+++|+|++++.++++
T Consensus 131 ~~~----~~~~~~ivrp~~~~~~~~~----------------~~~~~~--~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 131 LRE----SGLNWTIVRPGWIYGNPSR----------------SYRLIK--EGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp HHH----STSEEEEEEESEEEBTTSS----------------SEEEES--STSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred HHh----cCCCEEEEECcEeEeCCCc----------------ceeEEe--ccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 743 5999999999999998432 122221 1344566999999999999999864
|
... |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-21 Score=176.10 Aligned_cols=205 Identities=12% Similarity=0.077 Sum_probs=149.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
++|+++||||+|+||.+++++|+++|++|++++|+.+..+...... .....++.++.+|++|.+++.++++.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAEL---RSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999999999999999653221111111 112357889999999999988888753
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++.+..+++|+.++.++++.+ ++.+. ++||++||...++.
T Consensus 82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~------------ 148 (241)
T PRK07454 82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGG-GLIINVSSIAARNA------------ 148 (241)
T ss_pred CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC-cEEEEEccHHhCcC------------
Confidence 589999999975321 123345678999999988877776 33433 49999999887642
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
......|+.+|.+.+.+++.++++ .|+++++|+||.+-+|...... ..... .....+
T Consensus 149 ~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~-------------~~~~~-------~~~~~~ 208 (241)
T PRK07454 149 FPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTET-------------VQADF-------DRSAML 208 (241)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccccc-------------ccccc-------ccccCC
Confidence 234578999999999999888755 4899999999999876322110 00000 011357
Q ss_pred cHHHHHHHHHHhhhcCC
Q 043169 313 YIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~ 329 (421)
.++|+|++++.++..+.
T Consensus 209 ~~~~va~~~~~l~~~~~ 225 (241)
T PRK07454 209 SPEQVAQTILHLAQLPP 225 (241)
T ss_pred CHHHHHHHHHHHHcCCc
Confidence 89999999999998763
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=174.79 Aligned_cols=226 Identities=15% Similarity=0.079 Sum_probs=157.7
Q ss_pred CCCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCC------Chh-HHHHHHH-hhcCCceEEEEcccCCHHH
Q 043169 87 RSGGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFNNYY------DPS-LKKARKA-LLNNHGVFVIEGDINDAKL 156 (421)
Q Consensus 87 ~~~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~~~~------~~~-~~~~~~~-~~~~~~v~~~~~Dl~d~~~ 156 (421)
++++|+++||||+| +||.+++++|+++|++|++.+|..... +.. ....... .....++.++++|++|.++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 47899999999994 999999999999999999987542111 011 1111111 1123468889999999999
Q ss_pred HHHHhhcc-----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCC
Q 043169 157 LAKLFDAV-----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGL 223 (421)
Q Consensus 157 ~~~~~~~~-----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~ 223 (421)
+.++++.. ++|+||||||.... ..+.++.+..+++|+.+...+.+++ ++.+ .++||++||.....
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~- 160 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKS-GGRIINMTSGQFQG- 160 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEEcccccCC-
Confidence 99888764 48999999997532 1233345678999999987776554 3333 24999999976532
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEe
Q 043169 224 NENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300 (421)
Q Consensus 224 ~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (421)
+.++...|+.+|.+.+.+++.++.+ +||+++.|+||.+-++.... .+...+....+
T Consensus 161 -----------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~-----~~~~~~~~~~~----- 219 (256)
T PRK12859 161 -----------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE-----EIKQGLLPMFP----- 219 (256)
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH-----HHHHHHHhcCC-----
Confidence 2245688999999999999998876 58999999999987763221 11111111111
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
...+..++|+|++++.++........|+++.+.++
T Consensus 220 -------~~~~~~~~d~a~~~~~l~s~~~~~~~G~~i~~dgg 254 (256)
T PRK12859 220 -------FGRIGEPKDAARLIKFLASEEAEWITGQIIHSEGG 254 (256)
T ss_pred -------CCCCcCHHHHHHHHHHHhCccccCccCcEEEeCCC
Confidence 11245689999999998876544567777777654
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=197.56 Aligned_cols=227 Identities=15% Similarity=0.097 Sum_probs=165.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
...+|++|||||+|+||.++++.|+++|++|++++|+.+.. +..... ...++..+.+|++|++++.++++.+
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 339 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGA----KKLAEA--LGDEHLSVQADITDEAAVESAFAQIQA 339 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHH--hCCceeEEEccCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999854322 111111 1345778999999999999888764
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||.... ..+.++++.++++|+.|+.++++++.... ..++||++||...+. +
T Consensus 340 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~ 407 (520)
T PRK06484 340 RWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL------------A 407 (520)
T ss_pred HcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC------------C
Confidence 58999999997532 12334567889999999999999876542 124999999987642 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC-hHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDM-AYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
.++...|+.+|++.+.+++.++.++ ||++++|+||.|.++...... .-......+.+..+ ..-+
T Consensus 408 ~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 475 (520)
T PRK06484 408 LPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIP------------LGRL 475 (520)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCC------------CCCC
Confidence 2456789999999999999998774 899999999999887321100 00011112222111 1125
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..++|+|++++.++........|+.+.+.++.
T Consensus 476 ~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg~ 507 (520)
T PRK06484 476 GDPEEVAEAIAFLASPAASYVNGATLTVDGGW 507 (520)
T ss_pred cCHHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 67899999999998765556778888887653
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-21 Score=174.44 Aligned_cols=216 Identities=13% Similarity=0.108 Sum_probs=154.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|++|||||+|+||.+++++|+++|++|++++|+.+.. .... ...++.++.+|++|.+++.++++..
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 73 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPA---IDGL-----RQAGAQCIQADFSTNAGIMAFIDELKQHTD 73 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhH---HHHH-----HHcCCEEEEcCCCCHHHHHHHHHHHHhhCC
Confidence 47899999999999999999999999999999965421 1111 1134788999999999998888765
Q ss_pred CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cC-CCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----AN-PQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|++|||||..... ...++.+..+++|+.++..+.+.+.+ .+ ..++||++||..... .
T Consensus 74 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~------------~ 141 (236)
T PRK06483 74 GLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK------------G 141 (236)
T ss_pred CccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc------------C
Confidence 489999999975322 12345667899999998877776643 22 124899999865421 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
......|+.||.+.+.+++.++.++ ++++++|+||.+..+..... ..........+.. -+..
T Consensus 142 ~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~~----~~~~~~~~~~~~~------------~~~~ 205 (236)
T PRK06483 142 SDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDDA----AYRQKALAKSLLK------------IEPG 205 (236)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCCH----HHHHHHhccCccc------------cCCC
Confidence 2345789999999999999999885 59999999999854322111 1112222222211 1345
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
++|+|+++..++... ...|.++.+.++.
T Consensus 206 ~~~va~~~~~l~~~~--~~~G~~i~vdgg~ 233 (236)
T PRK06483 206 EEEIIDLVDYLLTSC--YVTGRSLPVDGGR 233 (236)
T ss_pred HHHHHHHHHHHhcCC--CcCCcEEEeCccc
Confidence 799999999999743 6778888887654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=178.51 Aligned_cols=225 Identities=17% Similarity=0.167 Sum_probs=155.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
|+++||||+|+||++++++|+++|++|++++|+.+..+...... ....++.++++|++|.++++++++.+ +
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l----~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL----KEYGEVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH----HhcCCceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 57999999999999999999999999999998654322221111 11246889999999999999888754 6
Q ss_pred CcEEEEcccccCch------hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVR------YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
+|+||||||..... ...++....+.+|+.++..+...+ .+....++||++||..... +
T Consensus 77 id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~------------~ 144 (259)
T PRK08340 77 IDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE------------P 144 (259)
T ss_pred CCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC------------C
Confidence 89999999974311 112233456788888765554433 3222234999999987642 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC---------hHHH-HHHHHHcCCCeEEEecC
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDM---------AYFS-FTRNILQGKPITVYRGK 302 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~ 302 (421)
.++...|+.+|.+.+.+++.++.++ ||+++.|.||.+-.|...... .... ....+....+
T Consensus 145 ~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------- 217 (259)
T PRK08340 145 MPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTP------- 217 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCC-------
Confidence 2346789999999999999999874 799999999998876322100 0000 0111111111
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..-+..++|+|++++.++........|.+..+.++.
T Consensus 218 -----~~r~~~p~dva~~~~fL~s~~~~~itG~~i~vdgg~ 253 (259)
T PRK08340 218 -----LKRTGRWEELGSLIAFLLSENAEYMLGSTIVFDGAM 253 (259)
T ss_pred -----ccCCCCHHHHHHHHHHHcCcccccccCceEeecCCc
Confidence 112567899999999999876566778888887664
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=176.24 Aligned_cols=205 Identities=17% Similarity=0.147 Sum_probs=151.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++++++||||+|+||.+++++|+++|++|++++|+.+..+...... .....++.++.+|++|++++.++++.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEV---EAYGVKVVIATADVSDYEEVTAAIEQLKN 80 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HHhCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999654322211111 112347889999999999999988754
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+. +++|++||...+.
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~ss~~~~~----------- 148 (239)
T PRK07666 81 ELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQS-GDIINISSTAGQK----------- 148 (239)
T ss_pred HcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-cEEEEEcchhhcc-----------
Confidence 679999999975432 12234467899999999999888753 333 4899999976542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
...+...|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ...+ . ...
T Consensus 149 -~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~~--------~~~~----------~---~~~ 206 (239)
T PRK07666 149 -GAAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDLG--------LTDG----------N---PDK 206 (239)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhcc--------cccc----------C---CCC
Confidence 1234567999999999999888765 5899999999999887322100 0000 1 123
Q ss_pred cccHHHHHHHHHHhhhcC
Q 043169 311 FTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~ 328 (421)
++.++|+|++++.++..+
T Consensus 207 ~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 207 VMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 578999999999999876
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-21 Score=176.29 Aligned_cols=226 Identities=15% Similarity=0.113 Sum_probs=153.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|+|+||||+|+||+++++.|+++|++|++++++......... ........++.++++|++|.+++.++++..
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETA--DAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFG 79 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH--HHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 3689999999999999999999999999887653321111111 111112347889999999999998888754
Q ss_pred CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHHhc----C--CCCeEEEEccccc-cCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACKSA----N--PQPSIVWASSSSV-YGLNENVPFSEA 232 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~--~~~riV~~SS~~v-~g~~~~~~~~e~ 232 (421)
++|+||||||..... ...++.+..+++|+.++..+++.+.+. + ..++||++||... ++.
T Consensus 80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~--------- 150 (248)
T PRK06947 80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS--------- 150 (248)
T ss_pred CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC---------
Confidence 589999999975331 123344567999999998887654321 1 1237999999754 321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+ .....|+.||.+.+.+++.++++. |+++++++||.+.+|....... +..........+ ..
T Consensus 151 --~-~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~~~------------~~ 214 (248)
T PRK06947 151 --P-NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQ-PGRAARLGAQTP------------LG 214 (248)
T ss_pred --C-CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCC-HHHHHHHhhcCC------------CC
Confidence 1 123579999999999999988774 8999999999999874221111 111111111111 01
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
-...++|++++++.++........|..+.+.++
T Consensus 215 ~~~~~e~va~~~~~l~~~~~~~~~G~~~~~~gg 247 (248)
T PRK06947 215 RAGEADEVAETIVWLLSDAASYVTGALLDVGGG 247 (248)
T ss_pred CCcCHHHHHHHHHHHcCccccCcCCceEeeCCC
Confidence 135689999999999887654567777777653
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-21 Score=176.05 Aligned_cols=200 Identities=18% Similarity=0.124 Sum_probs=144.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCC-CChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNY-YDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+|+|+||||+|+||++++++|+++| ++|++++|+.+. .+...++... ....+++++++|++|.+++.++++.+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~--~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA--AGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh--cCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 56899999999999999999999995 999999997764 2222222211 12237899999999999877766543
Q ss_pred --CCcEEEEcccccCchh-hccCC---chhhhhhHHHHHH----HHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVRY-AMQNP---HSYVHSNIAGLVT----LLEACKSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~-~~~~~---~~~~~~N~~g~~~----l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|++|||+|...... ...+. ...+++|+.++.. +++++++.+. ++||++||...+.
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS~~g~~------------ 151 (253)
T PRK07904 85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSSVAGER------------ 151 (253)
T ss_pred cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEechhhcC------------
Confidence 6899999999864321 11121 2468999999766 5556666654 4999999976432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+..+...|+.||++...+++.++.+ +|+++++++||.+..+-.. .... ....
T Consensus 152 ~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~-------------~~~~------------~~~~ 206 (253)
T PRK07904 152 VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSA-------------HAKE------------APLT 206 (253)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhc-------------cCCC------------CCCC
Confidence 1134567999999999888887655 5899999999999876211 0000 0124
Q ss_pred ccHHHHHHHHHHhhhcC
Q 043169 312 TYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~ 328 (421)
+.++|+|+.++.+++++
T Consensus 207 ~~~~~~A~~i~~~~~~~ 223 (253)
T PRK07904 207 VDKEDVAKLAVTAVAKG 223 (253)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 67899999999999876
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=177.39 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=153.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC-CCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN-NYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
+++||||+|+||.++++.|+++|++|++++|+. +..+...+.. ........+.++++|++|.+++.++++.+ +
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEI-NAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG 79 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH-HhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 379999999999999999999999999999863 2111111111 11111223556889999999998888764 5
Q ss_pred CcEEEEcccccCch----hhccCCchhhhhhHH----HHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVR----YAMQNPHSYVHSNIA----GLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~----g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|+||||||..... ...++....+++|+. ++..+++++++.+. ++||++||...+.. ..
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss~~~~~~------------~~ 146 (251)
T PRK07069 80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISSVAAFKA------------EP 146 (251)
T ss_pred ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecChhhccC------------CC
Confidence 79999999976432 122344567889998 56777777776664 49999999876542 23
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCC---hHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 238 PASLYAATKKAGEEIAHTYNHIY-----GLSITGLRFFTVYGPWGRPDM---AYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~vrp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
....|+.+|.+.+.+++.++.+. +++++.++||.+.+|...... ........+.++.+ ..
T Consensus 147 ~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 214 (251)
T PRK07069 147 DYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVP------------LG 214 (251)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCC------------CC
Confidence 45679999999999999888763 489999999999987432100 00011111222111 12
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.+.+++|+|++++.++........|..+.+.++
T Consensus 215 ~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~~g 247 (251)
T PRK07069 215 RLGEPDDVAHAVLYLASDESRFVTGAELVIDGG 247 (251)
T ss_pred CCcCHHHHHHHHHHHcCccccCccCCEEEECCC
Confidence 356789999999998876544556777766554
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-21 Score=181.06 Aligned_cols=205 Identities=17% Similarity=0.183 Sum_probs=149.7
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
..+++|+|+||||+|+||.++++.|+++|++|++++|+.+..+...+... .....+.++.+|++|.+++.++++.+
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~---~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 112 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRIT---RAGGDAMAVPCDLSDLDAVDALVADVE 112 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999996543222211111 11345789999999999999988743
Q ss_pred ----CCcEEEEcccccCchhh------ccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVRYA------MQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~~~------~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||....... ..+.+..+++|+.|+.++++++. +.+. ++||++||.+++..
T Consensus 113 ~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~------- 184 (293)
T PRK05866 113 KRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGD-GHIINVATWGVLSE------- 184 (293)
T ss_pred HHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEECChhhcCC-------
Confidence 67999999997643211 12345689999999888877653 4443 49999999766531
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
..+....|+.||++.+.+++.++.+ +|+++++++||.|-++.... .... .
T Consensus 185 ----~~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~----------------~~~~----~--- 237 (293)
T PRK05866 185 ----ASPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP----------------TKAY----D--- 237 (293)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc----------------cccc----c---
Confidence 1133578999999999999998876 48999999999887762211 0000 0
Q ss_pred eeecccHHHHHHHHHHhhhcC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~ 328 (421)
....+.++++|+.++.++++.
T Consensus 238 ~~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 238 GLPALTADEAAEWMVTAARTR 258 (293)
T ss_pred CCCCCCHHHHHHHHHHHHhcC
Confidence 112467899999999999865
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=176.33 Aligned_cols=206 Identities=15% Similarity=0.120 Sum_probs=145.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
|+|+||||+|+||.++++.|+++|++|++++|+.+.. ..... ....++.++.+|++|.+++.++++.. +
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~----~~~~~--~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 74 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERL----QELKD--ELGDNLYIAQLDVRNRAAIEEMLASLPAEWRN 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHH--HhccceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 6799999999999999999999999999999954321 11111 11346889999999999998888753 5
Q ss_pred CcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 166 ~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
+|+||||||.... ..+.++++..+++|+.|+..+++.+ ++.+. ++||++||...+. +.
T Consensus 75 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~------------~~ 141 (248)
T PRK10538 75 IDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNH-GHIINIGSTAGSW------------PY 141 (248)
T ss_pred CCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECCcccCC------------CC
Confidence 8999999997421 1233455678999999976666665 44443 4999999976531 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
.+...|+.+|.+.+.+++.++.+. |+++++++||.+.|+.......... ..... ..+ . ...++.
T Consensus 142 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~-~~~~~-----~~~----~---~~~~~~ 208 (248)
T PRK10538 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGD-DGKAE-----KTY----Q---NTVALT 208 (248)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCc-HHHHH-----hhc----c---ccCCCC
Confidence 346789999999999999998773 7999999999998653211000000 00000 000 0 113568
Q ss_pred HHHHHHHHHHhhhcC
Q 043169 314 IDDIVKGCLGSLDTS 328 (421)
Q Consensus 314 v~Dva~a~~~~l~~~ 328 (421)
++|+|++++.++..+
T Consensus 209 ~~dvA~~~~~l~~~~ 223 (248)
T PRK10538 209 PEDVSEAVWWVATLP 223 (248)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998766
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-21 Score=175.73 Aligned_cols=221 Identities=17% Similarity=0.125 Sum_probs=155.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+|+||||+|+||.+++++|+++|++|++++|+.... +..... -...++++|++|.++++++++.+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~----~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAG----KAAADE----VGGLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHHH----cCCcEEEeeCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999854311 111111 12368899999999999988864
Q ss_pred --CCcEEEEcccccCch------hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEcccc-ccCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR------YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSS-VYGLNENVPFSE 231 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~-v~g~~~~~~~~e 231 (421)
++|+||||||...+. ...++.+..+++|+.|+.++++.+. +.+. ++||++||.. +++.
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-g~iv~~sS~~~~~g~-------- 147 (255)
T PRK06057 77 YGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGK-GSIINTASFVAVMGS-------- 147 (255)
T ss_pred cCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCC-cEEEEEcchhhccCC--------
Confidence 689999999975321 1223356789999999887777653 3432 4899999854 4431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC--hHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM--AYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
..+...|+.+|++.+.+++.++.+ .|+++++++||.+.+|...... ......+.+. .+.
T Consensus 148 ----~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~-----~~~------- 211 (255)
T PRK06057 148 ----ATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRLV-----HVP------- 211 (255)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHh-----cCC-------
Confidence 123567999999998888877654 3899999999999987432110 0001111010 010
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
...+..++|+++++..++........|..+.+.++
T Consensus 212 -~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~~g 246 (255)
T PRK06057 212 -MGRFAEPEEIAAAVAFLASDDASFITASTFLVDGG 246 (255)
T ss_pred -CCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 12478899999999988876555566788888664
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-21 Score=197.97 Aligned_cols=242 Identities=17% Similarity=0.154 Sum_probs=162.8
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+..+.+|+||||||+|+||++++++|+++|++|++++|+.+..+....... .......+..+++|++|.+++.++++++
T Consensus 409 ~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~-~~~~~~~~~~v~~Dvtd~~~v~~a~~~i 487 (676)
T TIGR02632 409 EKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEIN-GQFGAGRAVALKMDVTDEQAVKAAFADV 487 (676)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH-hhcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 344679999999999999999999999999999999996532221111111 1112235778999999999999998865
Q ss_pred -----CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||...... ..+++...+++|+.+..++.+.+ ++.+..++||++||...+.
T Consensus 488 ~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~--------- 558 (676)
T TIGR02632 488 ALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY--------- 558 (676)
T ss_pred HHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC---------
Confidence 6899999999754221 22344567899999977766544 3444334899999965431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEecccc-CCCCCCCChHHHHHHHHHcCCCe----EEEecCC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVY-GPWGRPDMAYFSFTRNILQGKPI----TVYRGKN 303 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~-G~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 303 (421)
+......|+.||.+.+.+++.++.+ .||++++|+||.|+ |.+.......... ....+... ..+ .
T Consensus 559 ---~~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~---~ 630 (676)
T TIGR02632 559 ---AGKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREER--AAAYGIPADELEEHY---A 630 (676)
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhh--hhcccCChHHHHHHH---H
Confidence 1234578999999999999999877 47999999999987 3221111000000 00000000 000 0
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.......+++++|+|++++.++........|.++++.+|..
T Consensus 631 ~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 631 KRTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGGVP 671 (676)
T ss_pred hcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCch
Confidence 11223346889999999999887554456789999987653
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=176.01 Aligned_cols=224 Identities=16% Similarity=0.110 Sum_probs=151.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh--hcCCceEEEEcccCCHHHHH----HHhhc-
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL--LNNHGVFVIEGDINDAKLLA----KLFDA- 163 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~----~~~~~- 163 (421)
++++||||+|+||.+++++|+++|++|++++|+... .......+. .....+.++.+|++|.+++. ++++.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~ 78 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAA---AASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDAC 78 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHH---HHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHH
Confidence 479999999999999999999999999998764321 111111111 11235678999999987553 33332
Q ss_pred ---c-CCcEEEEcccccCchhh----cc-----------CCchhhhhhHHHHHHHHHHHHhcC---------CCCeEEEE
Q 043169 164 ---V-AFTHVMHLAAQAGVRYA----MQ-----------NPHSYVHSNIAGLVTLLEACKSAN---------PQPSIVWA 215 (421)
Q Consensus 164 ---~-~~d~vi~~Ag~~~~~~~----~~-----------~~~~~~~~N~~g~~~l~~~~~~~~---------~~~riV~~ 215 (421)
. ++|+||||||....... .. +....+++|+.++..+++++.+.. ...+||++
T Consensus 79 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~ 158 (267)
T TIGR02685 79 FRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNL 158 (267)
T ss_pred HHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEe
Confidence 1 58999999997532111 11 134679999999999988764321 12368888
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHc
Q 043169 216 SSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ 292 (421)
Q Consensus 216 SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~ 292 (421)
||..... +.++..+|+.||.+.+.+++.++.+ .|+++++|+||.+..|.... .........
T Consensus 159 ~s~~~~~------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~----~~~~~~~~~ 222 (267)
T TIGR02685 159 CDAMTDQ------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP----FEVQEDYRR 222 (267)
T ss_pred hhhhccC------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc----hhHHHHHHH
Confidence 8865421 2245678999999999999999877 58999999999987663321 111222222
Q ss_pred CCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 293 GKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..+.. ..+..++|++++++.++........|..+.+.++..
T Consensus 223 ~~~~~-----------~~~~~~~~va~~~~~l~~~~~~~~~G~~~~v~gg~~ 263 (267)
T TIGR02685 223 KVPLG-----------QREASAEQIADVVIFLVSPKAKYITGTCIKVDGGLS 263 (267)
T ss_pred hCCCC-----------cCCCCHHHHHHHHHHHhCcccCCcccceEEECCcee
Confidence 11110 124578999999999998765566788888876643
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=174.13 Aligned_cols=192 Identities=18% Similarity=0.115 Sum_probs=147.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.+.+++|+||||+|+||+++++.|+++|+ +|++++|+.+..++ ...++.++.+|++|.+++.++++..
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----------LGPRVVPLQLDVTDPASVAAAAEAAS 72 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----------cCCceEEEEecCCCHHHHHHHHHhcC
Confidence 36789999999999999999999999999 99999986532111 2357899999999999999999876
Q ss_pred CCcEEEEcccccC-c----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAG-V----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ~~d~vi~~Ag~~~-~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+|||+||... . ....+++...+++|+.++.++++++. +.+. ++||++||...+. +
T Consensus 73 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~~sS~~~~~------------~ 139 (238)
T PRK08264 73 DVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGG-GAIVNVLSVLSWV------------N 139 (238)
T ss_pred CCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcChhhcc------------C
Confidence 4799999999832 1 11234456789999999999998864 3343 4899999987653 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
..+...|+.+|.+.+.+++.++++. |+++++++||.+.++-... . .+ ..+
T Consensus 140 ~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~--------------~---------~~----~~~ 192 (238)
T PRK08264 140 FPNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAG--------------L---------DA----PKA 192 (238)
T ss_pred CCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccccccc--------------C---------Cc----CCC
Confidence 2356789999999999999988763 8999999999998762110 0 00 145
Q ss_pred cHHHHHHHHHHhhhcC
Q 043169 313 YIDDIVKGCLGSLDTS 328 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~ 328 (421)
..+|++++++..+...
T Consensus 193 ~~~~~a~~~~~~~~~~ 208 (238)
T PRK08264 193 SPADVARQILDALEAG 208 (238)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 6688888888777755
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=170.80 Aligned_cols=220 Identities=15% Similarity=0.139 Sum_probs=157.7
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----CCc
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----AFT 167 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~~d 167 (421)
|+|||++|+||+++++.|+++|++|++++|+.......... .......++.++.+|++|.+++++++++. ++|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVE--ELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPID 78 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHH--HHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999865211111111 11112245889999999999999988764 589
Q ss_pred EEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEcccc-ccCCCCCCCCCCCCCCCCC
Q 043169 168 HVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSS-VYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 168 ~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~-v~g~~~~~~~~e~~~~~~~ 238 (421)
+|||+||.... ....++++..+++|+.++.++++.+.+ .+ .++||++||.. ++|. ..
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~g~-------------~~ 144 (239)
T TIGR01830 79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQR-SGRIINISSVVGLMGN-------------AG 144 (239)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEECCccccCCC-------------CC
Confidence 99999998542 122345667899999999999998864 33 34999999964 4431 34
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
...|+.+|.+.+.+++.++++ .|+++++++||.+.++.... ....+...+....+ ..-+.+++
T Consensus 145 ~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~--~~~~~~~~~~~~~~------------~~~~~~~~ 210 (239)
T TIGR01830 145 QANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK--LSEKVKKKILSQIP------------LGRFGTPE 210 (239)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh--cChHHHHHHHhcCC------------cCCCcCHH
Confidence 577999999999999988765 48999999999987753221 11122222322221 11256789
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
|++++++.++........|++||+.++
T Consensus 211 ~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 211 EVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 999999998866544567889999764
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=173.35 Aligned_cols=225 Identities=16% Similarity=0.104 Sum_probs=161.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL-DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+.+|+++||||+|+||.++++.|+++|++|+++ +|+.+..+....... ....++.++.+|++|++++.++++..
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIK---EEGGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999999999999998 775432211111111 12356889999999999998888754
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+|||+||..... ...++.+..+++|+.++.++++.+.. .+. ++||++||...+..
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~~sS~~~~~~---------- 148 (247)
T PRK05565 80 KFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKS-GVIVNISSIWGLIG---------- 148 (247)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECCHhhccC----------
Confidence 679999999986321 12334567899999998888887753 332 38999999765421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
......|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ......+.... ....
T Consensus 149 --~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~--~~~~~~~~~~~------------~~~~ 212 (247)
T PRK05565 149 --ASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFS--EEDKEGLAEEI------------PLGR 212 (247)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccC--hHHHHHHHhcC------------CCCC
Confidence 133567999999999998888766 3899999999999776432211 11111111100 0123
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+..++|++++++.++........|+.+++.++
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 244 (247)
T PRK05565 213 LGKPEEIAKVVLFLASDDASYITGQIITVDGG 244 (247)
T ss_pred CCCHHHHHHHHHHHcCCccCCccCcEEEecCC
Confidence 56889999999999987655677888888765
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-21 Score=173.34 Aligned_cols=217 Identities=17% Similarity=0.112 Sum_probs=155.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+.+++|+||||+|+||++++++|+++|++|++++|+.+... ..........++.++.+|++|.+++.+++++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~----~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELE----EAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHH----HHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998643211 11111111257889999999999999888754
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC--CCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN--PQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+|||+||..... ...++.+..+++|+.++.++++++.+.. ..++||++||...+. +.
T Consensus 80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------~~ 147 (237)
T PRK07326 80 FGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN------------FF 147 (237)
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc------------CC
Confidence 679999999975431 1233455789999999999888875421 124899999976542 12
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
.....|+.+|++.+.+++.+..+ .|+++++++||.+.++...... .. .....+.
T Consensus 148 ~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~-----------~~------------~~~~~~~ 204 (237)
T PRK07326 148 AGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTP-----------SE------------KDAWKIQ 204 (237)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccccc-----------ch------------hhhccCC
Confidence 34577999999999999888654 4899999999999876322100 00 0001367
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
++|++++++.++..+. ........+..+.+
T Consensus 205 ~~d~a~~~~~~l~~~~-~~~~~~~~~~~~~~ 234 (237)
T PRK07326 205 PEDIAQLVLDLLKMPP-RTLPSKIEVRPSRP 234 (237)
T ss_pred HHHHHHHHHHHHhCCc-cccccceEEecCCC
Confidence 8999999999998773 34455555555444
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=173.50 Aligned_cols=214 Identities=14% Similarity=0.086 Sum_probs=149.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC--HHHHHHHhhc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND--AKLLAKLFDA- 163 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~- 163 (421)
.+++|+++||||+|+||.++++.|+++|++|++++|+.+..+........ .....+.++.+|+++ .+++.++++.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~i 80 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVE--AGHPEPFAIRFDLMSAEEKEFEQFAATI 80 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHH--cCCCCcceEEeeecccchHHHHHHHHHH
Confidence 46789999999999999999999999999999999976432222111111 122356788999975 4455554432
Q ss_pred -----cCCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCC
Q 043169 164 -----VAFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPF 229 (421)
Q Consensus 164 -----~~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~ 229 (421)
-++|+||||||.... ....+++...+++|+.|+.++++++.+ .+ .+++|++||....
T Consensus 81 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~ss~~~~-------- 151 (239)
T PRK08703 81 AEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSP-DASVIFVGESHGE-------- 151 (239)
T ss_pred HHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC-CCEEEEEeccccc--------
Confidence 157999999997532 112334456799999998888887743 33 3499999996542
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 230 SEADRTDQPASLYAATKKAGEEIAHTYNHIY----GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 230 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
.+......|+.||++.+.+++.++.+. ++++++|+||.|++|..... ..+
T Consensus 152 ----~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~----------~~~------------ 205 (239)
T PRK08703 152 ----TPKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKS----------HPG------------ 205 (239)
T ss_pred ----cCCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcccccc----------CCC------------
Confidence 122345689999999999999998874 59999999999999832210 000
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEE
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIF 337 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~ 337 (421)
.....+...+|++.+++.++........|++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 237 (239)
T PRK08703 206 EAKSERKSYGDVLPAFVWWASAESKGRSGEIV 237 (239)
T ss_pred CCccccCCHHHHHHHHHHHhCccccCcCCeEe
Confidence 01113457899999999999865445556654
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=174.89 Aligned_cols=229 Identities=13% Similarity=0.020 Sum_probs=160.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-CC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-AF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 166 (421)
+++|+++||||+|+||.++++.|+++|++|++++|+.+..+....... .....++.++.+|++|.+++.++++.. ++
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLR--AAHGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--hhcCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 578999999999999999999999999999999996542222111111 111346889999999999999998865 68
Q ss_pred cEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 167 THVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 167 d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
|++|||||.... ....++++..+++|+.+..++++++ ++.+ .++||++||.... .+...
T Consensus 83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss~~~~------------~~~~~ 149 (259)
T PRK06125 83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIGAAGE------------NPDAD 149 (259)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecCcccc------------CCCCC
Confidence 999999997532 1233455678999999988888876 3333 2389999986542 12234
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC--------ChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 239 ASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD--------MAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
...|+.+|.+.+.+++.++.+ .|++++.|+||.+.+|..... ..-....+.+...- .
T Consensus 150 ~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 217 (259)
T PRK06125 150 YICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGL------------P 217 (259)
T ss_pred chHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccC------------C
Confidence 567999999999999998865 489999999999987621100 00000011111100 0
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..-+..++|+|++++.++........|..+.+.++.
T Consensus 218 ~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~vdgg~ 253 (259)
T PRK06125 218 LGRPATPEEVADLVAFLASPRSGYTSGTVVTVDGGI 253 (259)
T ss_pred cCCCcCHHHHHHHHHHHcCchhccccCceEEecCCe
Confidence 113568899999999998765555678888887663
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-21 Score=176.48 Aligned_cols=231 Identities=14% Similarity=0.056 Sum_probs=156.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
|+++||||+|+||.+++++|+++|++|++++|+.+..+... ........++.++.+|++|++++.++++.. +
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~---~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETA---KEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---HHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999998642111111 111112346889999999999998887664 5
Q ss_pred CcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|+||||||.... ....++.+..+++|+.++..+++++. +.+..++||++||..... ..+
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~~ 145 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHE------------GNP 145 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcC------------CCC
Confidence 7999999998543 12234456789999999887777664 333335999999965431 113
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEe---cCCCCcceeec
Q 043169 238 PASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR---GKNHVDLARDF 311 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 311 (421)
....|+.+|.+.+.+++.++.+. |+++++++||.+.++... .+.....+........ ..........+
T Consensus 146 ~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (254)
T TIGR02415 146 ILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWE------EIDEETSEIAGKPIGEGFEEFSSEIALGRP 219 (254)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhh------hhhhhhhhcccCchHHHHHHHHhhCCCCCC
Confidence 46789999999999999988774 799999999998766311 1110000000000000 00000011237
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
..++|+++++..++........|..+.+.++
T Consensus 220 ~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 250 (254)
T TIGR02415 220 SEPEDVAGLVSFLASEDSDYITGQSILVDGG 250 (254)
T ss_pred CCHHHHHHHHHhhcccccCCccCcEEEecCC
Confidence 7889999999999987755556777766654
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-21 Score=179.48 Aligned_cols=164 Identities=20% Similarity=0.240 Sum_probs=132.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
++++|+||||+|+||++++++|+++|++|++++|+.+..+ ...++.++++|++|+++++++++.+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA-----------PIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-----------ccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 5678999999999999999999999999999999643221 1246889999999999999998875
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++.+..+++|+.|+.++++++ ++.+. ++||++||...+. +
T Consensus 72 g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~------------~ 138 (270)
T PRK06179 72 GRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGS-GRIINISSVLGFL------------P 138 (270)
T ss_pred CCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEECCccccC------------C
Confidence 689999999986432 123345678999999988888875 45554 4999999976543 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPW 276 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~ 276 (421)
.+....|+.+|.+.+.+++.++.+ +|+++++++||.+.++.
T Consensus 139 ~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~ 182 (270)
T PRK06179 139 APYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNF 182 (270)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCccccc
Confidence 234578999999999999998765 59999999999998874
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=175.21 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=157.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||.+++++|+++|++|++++|+.+.. +.... ....++.++++|++|.+++.++++.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGL----QELEA--AHGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHh--hcCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999854321 11111 11346888999999999988888764
Q ss_pred --CCcEEEEcccccCc--h---hhc----cCCchhhhhhHHHHHHHHHHHHhcC--CCCeEEEEccccccCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV--R---YAM----QNPHSYVHSNIAGLVTLLEACKSAN--PQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~--~---~~~----~~~~~~~~~N~~g~~~l~~~~~~~~--~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||.... . ... ++++..+++|+.++.++++++.+.. ..+++|++||...+.
T Consensus 77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~--------- 147 (262)
T TIGR03325 77 FGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY--------- 147 (262)
T ss_pred hCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec---------
Confidence 68999999997421 1 011 2355789999999999999885431 124788888865431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCh-H-H----HH-HHHHHcCCCeEEEecC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMA-Y-F----SF-TRNILQGKPITVYRGK 302 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~-~-~----~~-~~~~~~~~~~~~~~~~ 302 (421)
+......|+.||.+.+.+++.++.++ +++++.|.||.+..+-...... . . .+ .....+.. .
T Consensus 148 ---~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 217 (262)
T TIGR03325 148 ---PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSV-L------ 217 (262)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhhc-C------
Confidence 12345679999999999999999885 3999999999998763221000 0 0 00 01111110 0
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcC-CCCCCceEEEecCC
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTS-AGPAPYRIFNLGNT 342 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~i~~~ 342 (421)
...-+..++|+|++++.++... .....|.++.+.++
T Consensus 218 ----p~~r~~~p~eva~~~~~l~s~~~~~~~tG~~i~vdgg 254 (262)
T TIGR03325 218 ----PIGRMPDAEEYTGAYVFFATRGDTVPATGAVLNYDGG 254 (262)
T ss_pred ----CCCCCCChHHhhhheeeeecCCCcccccceEEEecCC
Confidence 1123567899999999988753 23457888888765
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=176.11 Aligned_cols=234 Identities=17% Similarity=0.127 Sum_probs=156.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----C
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----A 165 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----~ 165 (421)
+|+++|||+ |+||+++++.|+ +|++|++++|+.+..+...+... ....++.++++|++|.+++.++++.. +
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~ 76 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLR---EAGFDVSTQEVDVSSRESVKALAATAQTLGP 76 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence 478999998 799999999996 89999999996543222211111 11346888999999999999888753 5
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCC---C--C---CCCCCCC--
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNE---N--V---PFSEADR-- 234 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~---~--~---~~~e~~~-- 234 (421)
+|+||||||... ...+++.++++|+.|+.++++++.+.- ..+++|++||........ . . .++.++.
T Consensus 77 id~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (275)
T PRK06940 77 VTGLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLS 153 (275)
T ss_pred CCEEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccccc
Confidence 899999999753 235677899999999999999885431 113677788765432110 0 0 0000000
Q ss_pred -----C---CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC--ChHHHHHHHHHcCCCeEEEec
Q 043169 235 -----T---DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD--MAYFSFTRNILQGKPITVYRG 301 (421)
Q Consensus 235 -----~---~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 301 (421)
+ ..+...|+.||++.+.+++.++.+ +||++++|+||.+.++-.... .........+....+
T Consensus 154 ~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p------ 227 (275)
T PRK06940 154 LPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSP------ 227 (275)
T ss_pred cccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCC------
Confidence 0 023568999999999999988876 489999999999988732110 000011112221111
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..-+..++|+|++++.++........|.++.+.++.
T Consensus 228 ------~~r~~~peeia~~~~fL~s~~~~~itG~~i~vdgg~ 263 (275)
T PRK06940 228 ------AGRPGTPDEIAALAEFLMGPRGSFITGSDFLVDGGA 263 (275)
T ss_pred ------cccCCCHHHHHHHHHHHcCcccCcccCceEEEcCCe
Confidence 112677899999999998765556778888887653
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-21 Score=160.27 Aligned_cols=224 Identities=16% Similarity=0.081 Sum_probs=169.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+..|.++||||+++||+++++.|+++|++|.+.+++....++.. .......+...+.||+++..+++..+++.
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata----~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~ 87 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATA----GDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKS 87 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHH----hhcCCCCccceeeeccCcHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999998665222221 11222256678899999999988877765
Q ss_pred --CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhc----CCC-CeEEEEccccc-cCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSA----NPQ-PSIVWASSSSV-YGLNENVPFSEA 232 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~-~riV~~SS~~v-~g~~~~~~~~e~ 232 (421)
.|++||||||+... .+..+++...+.+|+.|+..+.+++.+. +.. .+||++||.-. .|
T Consensus 88 ~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiG---------- 157 (256)
T KOG1200|consen 88 LGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIG---------- 157 (256)
T ss_pred cCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccc----------
Confidence 79999999999643 4567788899999999999999987543 111 28999999642 22
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
....+.|+++|.....+.+..+++ .+|+++++.||+|-.|-.. ...+.+...+...-|..-+
T Consensus 158 ---N~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~--~mp~~v~~ki~~~iPmgr~---------- 222 (256)
T KOG1200|consen 158 ---NFGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTE--AMPPKVLDKILGMIPMGRL---------- 222 (256)
T ss_pred ---cccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhh--hcCHHHHHHHHccCCcccc----------
Confidence 234678999998877666666655 4899999999999987221 1234667777776665443
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
-..+|+|..++.+....++...|..+.++++
T Consensus 223 --G~~EevA~~V~fLAS~~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 223 --GEAEEVANLVLFLASDASSYITGTTLEVTGG 253 (256)
T ss_pred --CCHHHHHHHHHHHhccccccccceeEEEecc
Confidence 3469999999998877667778888888765
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=173.67 Aligned_cols=236 Identities=16% Similarity=0.124 Sum_probs=167.6
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.++.+|++|||||+.+||+++|++|++.|++|++.+|+++..+..............++..+.+|+++.+.++++++..
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 3479999999999999999999999999999999999877655554443333333567999999999988777666442
Q ss_pred -----CCcEEEEcccccCc-----hhhccCCchhhhhhHHH-HHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAG-LVTLLEACK----SANPQPSIVWASSSSVYGLNENVPF 229 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g-~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~ 229 (421)
++|++|||||.... +.+.+.++..+++|+.| ...+.+++. +.+ ...|+++||...+..
T Consensus 84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~-gg~I~~~ss~~~~~~------ 156 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSK-GGSIVNISSVAGVGP------ 156 (270)
T ss_pred HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcC-CceEEEEeccccccC------
Confidence 68999999998753 23455677899999996 555555553 333 238999998765421
Q ss_pred CCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC---ChHHHHHHHHHcCCCeEEEecC
Q 043169 230 SEADRTDQPA-SLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD---MAYFSFTRNILQGKPITVYRGK 302 (421)
Q Consensus 230 ~e~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
..+. ..|+.+|.+.+.+++.++.+ +|+++++|-||.|.++-.... .....+.+.......+
T Consensus 157 ------~~~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~------ 224 (270)
T KOG0725|consen 157 ------GPGSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAV------ 224 (270)
T ss_pred ------CCCCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhcccccc------
Confidence 1122 78999999999999999877 589999999999998741100 0011121110001111
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..--+..++|++.++..++....+...|+.+.+.++..
T Consensus 225 ----p~gr~g~~~eva~~~~fla~~~asyitG~~i~vdgG~~ 262 (270)
T KOG0725|consen 225 ----PLGRVGTPEEVAEAAAFLASDDASYITGQTIIVDGGFT 262 (270)
T ss_pred ----ccCCccCHHHHHHhHHhhcCcccccccCCEEEEeCCEE
Confidence 12236678999999999887764467777877776543
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-20 Score=171.46 Aligned_cols=195 Identities=16% Similarity=0.129 Sum_probs=145.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--CCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--AFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d~ 168 (421)
++++||||+|+||.+++++|+++|++|++++|+.+. .+.... ...++.++.+|++|.+++++++++. .+|+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~----~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~ 74 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSV----LDELHT---QSANIFTLAFDVTDHPGTKAALSQLPFIPEL 74 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHH----HHHHHH---hcCCCeEEEeeCCCHHHHHHHHHhcccCCCE
Confidence 689999999999999999999999999999995421 111111 1246889999999999999999875 4799
Q ss_pred EEEcccccCc-h---hhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHH
Q 043169 169 VMHLAAQAGV-R---YAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 169 vi~~Ag~~~~-~---~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
+|||||.... . ...++.+.++++|+.|+.++++++.... ..++||++||....- +.+....|+
T Consensus 75 ~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~------------~~~~~~~Y~ 142 (240)
T PRK06101 75 WIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL------------ALPRAEAYG 142 (240)
T ss_pred EEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc------------CCCCCchhh
Confidence 9999986432 1 1222345689999999999999987531 123899999865321 123456899
Q ss_pred HHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHH
Q 043169 244 ATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 320 (421)
.+|.+.+.+++.++.+ .|+++++++||.+++|...... .. . ...+.++|+|+.
T Consensus 143 asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~--------------~~------~----~~~~~~~~~a~~ 198 (240)
T PRK06101 143 ASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNT--------------FA------M----PMIITVEQASQE 198 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCC--------------CC------C----CcccCHHHHHHH
Confidence 9999999999988854 5899999999999987332110 00 0 013678999999
Q ss_pred HHHhhhcC
Q 043169 321 CLGSLDTS 328 (421)
Q Consensus 321 ~~~~l~~~ 328 (421)
++..++..
T Consensus 199 i~~~i~~~ 206 (240)
T PRK06101 199 IRAQLARG 206 (240)
T ss_pred HHHHHhcC
Confidence 99999875
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=174.27 Aligned_cols=201 Identities=14% Similarity=0.103 Sum_probs=147.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|+++||||+|+||.+++++|+++|++|++++|+.+..+....... ......++.++++|++|.+++.++++++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELL-ARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH-hhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999996543222111111 1112457899999999999998888764
Q ss_pred CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||+..... ..+..+..+++|+.++.++++++. +.+. ++||++||...... ..
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~-----------~~ 148 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGS-GHLVLISSVSAVRG-----------LP 148 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEeccccccC-----------CC
Confidence 5899999999864321 122345678999999888888764 4443 38999999654321 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
.+...|+.||.+.+.+++.++.++ |+++++++||++.++.... .+. ....+.
T Consensus 149 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~------------~~~-------------~~~~~~ 203 (248)
T PRK08251 149 GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK------------AKS-------------TPFMVD 203 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc------------ccc-------------CCccCC
Confidence 235789999999999999888763 7999999999998762110 000 112567
Q ss_pred HHHHHHHHHHhhhcC
Q 043169 314 IDDIVKGCLGSLDTS 328 (421)
Q Consensus 314 v~Dva~a~~~~l~~~ 328 (421)
.+|.|++++.+++.+
T Consensus 204 ~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 204 TETGVKALVKAIEKE 218 (248)
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999999865
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=173.60 Aligned_cols=200 Identities=15% Similarity=0.073 Sum_probs=147.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--CCc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--AFT 167 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d 167 (421)
+|+|+||||+|+||.+++++|+++|++|++++|+.+..+....... .....++.++++|++|.++++++++++ ++|
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLR--ARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH--HhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 4789999999999999999999999999999996543222111111 112357899999999999999988765 579
Q ss_pred EEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCCCCCCC
Q 043169 168 HVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADRTDQPA 239 (421)
Q Consensus 168 ~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~ 239 (421)
+||||||..... ...+++...+++|+.++.++++++.+ .+. ++||++||..... .....
T Consensus 79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~------------~~~~~ 145 (243)
T PRK07102 79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGS-GTIVGISSVAGDR------------GRASN 145 (243)
T ss_pred EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC-CEEEEEecccccC------------CCCCC
Confidence 999999975432 12233446789999999999888753 333 4899999975321 11334
Q ss_pred ChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHH
Q 043169 240 SLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDD 316 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 316 (421)
..|+.+|.+.+.+++.++.+ .|+++++++||.+.++.... .. .. ..-...++|
T Consensus 146 ~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~--------------~~--~~--------~~~~~~~~~ 201 (243)
T PRK07102 146 YVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAG--------------LK--LP--------GPLTAQPEE 201 (243)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhc--------------cC--CC--------ccccCCHHH
Confidence 67999999999999998765 48999999999999862110 00 00 012467899
Q ss_pred HHHHHHHhhhcC
Q 043169 317 IVKGCLGSLDTS 328 (421)
Q Consensus 317 va~a~~~~l~~~ 328 (421)
+|++++.+++.+
T Consensus 202 ~a~~i~~~~~~~ 213 (243)
T PRK07102 202 VAKDIFRAIEKG 213 (243)
T ss_pred HHHHHHHHHhCC
Confidence 999999999865
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=169.04 Aligned_cols=208 Identities=16% Similarity=0.143 Sum_probs=147.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-CCcE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-AFTH 168 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d~ 168 (421)
+|++|||||+|+||+++++.|+++ ++|++++|+.+. ...... ...+++++++|++|.+++.++++.+ ++|+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~----~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 74 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAER----LDELAA---ELPGATPFPVDLTDPEAIAAAVEQLGRLDV 74 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHH----HHHHHH---HhccceEEecCCCCHHHHHHHHHhcCCCCE
Confidence 578999999999999999999999 999999995421 111111 1136889999999999999999865 5799
Q ss_pred EEEcccccCchh----hccCCchhhhhhHHHHH----HHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCC
Q 043169 169 VMHLAAQAGVRY----AMQNPHSYVHSNIAGLV----TLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240 (421)
Q Consensus 169 vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~----~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~ 240 (421)
|||+||...... ..++....+++|+.+.. ++++++++.+ +++|++||...++. ..+..
T Consensus 75 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~v~~ss~~~~~~------------~~~~~ 140 (227)
T PRK08219 75 LVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH--GHVVFINSGAGLRA------------NPGWG 140 (227)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEcchHhcCc------------CCCCc
Confidence 999999854321 12234456889999844 4444445544 38999999876531 23457
Q ss_pred hHHHHHHHHHHHHHHHHHHh-C-CcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHH
Q 043169 241 LYAATKKAGEEIAHTYNHIY-G-LSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV 318 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~~-g-i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 318 (421)
.|+.+|.+.+.+++.++.+. + +++..++||.+.++... . ...... .......+++++|+|
T Consensus 141 ~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~------~----~~~~~~--------~~~~~~~~~~~~dva 202 (227)
T PRK08219 141 SYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQR------G----LVAQEG--------GEYDPERYLRPETVA 202 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhh------h----hhhhhc--------cccCCCCCCCHHHHH
Confidence 89999999999999887652 5 89999999987765211 1 111110 001123589999999
Q ss_pred HHHHHhhhcCCCCCCceEEEec
Q 043169 319 KGCLGSLDTSAGPAPYRIFNLG 340 (421)
Q Consensus 319 ~a~~~~l~~~~~~~~~~~~~i~ 340 (421)
++++.+++.+ ..+.++++.
T Consensus 203 ~~~~~~l~~~---~~~~~~~~~ 221 (227)
T PRK08219 203 KAVRFAVDAP---PDAHITEVV 221 (227)
T ss_pred HHHHHHHcCC---CCCccceEE
Confidence 9999999876 245666664
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-20 Score=167.67 Aligned_cols=223 Identities=14% Similarity=0.087 Sum_probs=156.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHH-HHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKAR-KALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
|++|||||+|+||.+++++|+++|++|+++.|... ....... .......++.++.+|++|++++.+++++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNE---ERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELG 77 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999988321 1111111 11112357889999999999998888654
Q ss_pred CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||.... ....++++..+++|+.++..+++.+ ++.+. ++||++||..... ..
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~iss~~~~~------------~~ 144 (242)
T TIGR01829 78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGW-GRIINISSVNGQK------------GQ 144 (242)
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhcC------------CC
Confidence 58999999997542 1223445677899999977765554 44553 4999999965431 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
.....|+.+|.+.+.+++.++++ .|+++++++||.+.++.... ....+...+....+.. .+..
T Consensus 145 ~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~--~~~~~~~~~~~~~~~~------------~~~~ 210 (242)
T TIGR01829 145 FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMA--MREDVLNSIVAQIPVG------------RLGR 210 (242)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccc--cchHHHHHHHhcCCCC------------CCcC
Confidence 34567999999999999888765 48999999999999874331 1122333333322211 2445
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
++|+++++..++..+.....|+.+.+.++.
T Consensus 211 ~~~~a~~~~~l~~~~~~~~~G~~~~~~gg~ 240 (242)
T TIGR01829 211 PEEIAAAVAFLASEEAGYITGATLSINGGL 240 (242)
T ss_pred HHHHHHHHHHHcCchhcCccCCEEEecCCc
Confidence 799999998887765445678888888763
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-20 Score=176.58 Aligned_cols=233 Identities=10% Similarity=0.025 Sum_probs=151.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
.+|+++||||+++||.++++.|+++| ++|++++|+.+..++..... ......+.++.+|++|.++++++++.+
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l---~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 78 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSL---GMPKDSYTIMHLDLGSLDSVRQFVQQFRES 78 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh---cCCCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999 99999998654322211111 112346788999999999998888764
Q ss_pred --CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHH----hcC-CCCeEEEEccccccCCCC----CCC
Q 043169 165 --AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACK----SAN-PQPSIVWASSSSVYGLNE----NVP 228 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~-~~~riV~~SS~~v~g~~~----~~~ 228 (421)
++|++|||||+.... .+.++.+..+++|+.|+..+++++. +.+ ..++||++||...+.... ..+
T Consensus 79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~ 158 (314)
T TIGR01289 79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPK 158 (314)
T ss_pred CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCc
Confidence 589999999975321 1234556789999999877766653 332 124999999987653210 000
Q ss_pred --CCC---------------CCCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEEecccc-CCCCCCCCh-HHH
Q 043169 229 --FSE---------------ADRTDQPASLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVY-GPWGRPDMA-YFS 285 (421)
Q Consensus 229 --~~e---------------~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~-G~~~~~~~~-~~~ 285 (421)
+.+ +..+..+...|+.||++...++++++++ .|+++++|+||.|. .+-...... ...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~ 238 (314)
T TIGR01289 159 ANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRT 238 (314)
T ss_pred ccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHH
Confidence 000 0111235578999999999999988765 37999999999995 332211111 111
Q ss_pred HHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEE
Q 043169 286 FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIF 337 (421)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~ 337 (421)
+...+.... . ..+..+++.|+.++.++........|..|
T Consensus 239 ~~~~~~~~~---~----------~~~~~~~~~a~~l~~~~~~~~~~~~g~~~ 277 (314)
T TIGR01289 239 LFPPFQKYI---T----------KGYVSEEEAGERLAQVVSDPKLKKSGVYW 277 (314)
T ss_pred HHHHHHHHH---h----------ccccchhhhhhhhHHhhcCcccCCCceee
Confidence 111110000 0 01456899999999888765332334444
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=170.34 Aligned_cols=203 Identities=14% Similarity=0.096 Sum_probs=150.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--CCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--AFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d~ 168 (421)
|+++||||+|+||+++++.|+++|++|++++|+.++. .... ...++.++++|++|.++++++++.+ ++|+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~----~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~ 72 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDL----EVAA----KELDVDAIVCDNTDPASLEEARGLFPHHLDT 72 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHH----HhccCcEEecCCCCHHHHHHHHHHHhhcCcE
Confidence 4799999999999999999999999999999854211 1111 1124678899999999999988764 5799
Q ss_pred EEEcccccC----c---hh--hccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 169 VMHLAAQAG----V---RY--AMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 169 vi~~Ag~~~----~---~~--~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
+|||||... + .. ..++++..+++|+.++.++++++.+.- ..++||++||... ..
T Consensus 73 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~----------------~~ 136 (223)
T PRK05884 73 IVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP----------------PA 136 (223)
T ss_pred EEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC----------------CC
Confidence 999998521 1 01 234567889999999999999875421 1249999998641 23
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
...|+.||++.+.+++.++.+ +|++++.|.||.+..+.. ... ... +...++
T Consensus 137 ~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~----------~~~-~~~---------------p~~~~~ 190 (223)
T PRK05884 137 GSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGY----------DGL-SRT---------------PPPVAA 190 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhh----------hhc-cCC---------------CCCCHH
Confidence 467999999999999999876 489999999999876511 000 000 112679
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
|+++++..++........|+++.+.++.
T Consensus 191 ~ia~~~~~l~s~~~~~v~G~~i~vdgg~ 218 (223)
T PRK05884 191 EIARLALFLTTPAARHITGQTLHVSHGA 218 (223)
T ss_pred HHHHHHHHHcCchhhccCCcEEEeCCCe
Confidence 9999999998876556778888887654
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=173.65 Aligned_cols=233 Identities=10% Similarity=0.004 Sum_probs=156.6
Q ss_pred ccCCCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh------hcC----CceEEEEccc-
Q 043169 85 IHRSGGMSVLVTGA--AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL------LNN----HGVFVIEGDI- 151 (421)
Q Consensus 85 ~~~~~~k~vlITG~--sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~------~~~----~~v~~~~~Dl- 151 (421)
+.+++||++||||| +++||.++++.|+++|++|++ +|+.+..+.......... ... ....++.+|+
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 82 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV 82 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence 34589999999999 899999999999999999998 666555443332222110 011 1246788898
Q ss_pred -CC------------------HHHHHHHhhcc-----CCcEEEEcccccC----c--hhhccCCchhhhhhHHHHHHHHH
Q 043169 152 -ND------------------AKLLAKLFDAV-----AFTHVMHLAAQAG----V--RYAMQNPHSYVHSNIAGLVTLLE 201 (421)
Q Consensus 152 -~d------------------~~~~~~~~~~~-----~~d~vi~~Ag~~~----~--~~~~~~~~~~~~~N~~g~~~l~~ 201 (421)
++ .++++++++.+ ++|+||||||... + ..+.++++..+++|+.++..+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~ 162 (303)
T PLN02730 83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQ 162 (303)
T ss_pred cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence 33 33677777654 5899999997532 1 23445677899999999888888
Q ss_pred HHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCC
Q 043169 202 ACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVYGP 275 (421)
Q Consensus 202 ~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~G~ 275 (421)
++...-. .++||++||..... ..+.. ..|+.||.+.+.+++.++.+ +||+++.|.||.+..+
T Consensus 163 ~~~p~m~~~G~II~isS~a~~~------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~ 230 (303)
T PLN02730 163 HFGPIMNPGGASISLTYIASER------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSR 230 (303)
T ss_pred HHHHHHhcCCEEEEEechhhcC------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCc
Confidence 7754311 14999999976431 11223 47999999999999999876 3799999999999876
Q ss_pred CCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 276 WGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
-..................+ ..-+..++|++.+++.++........|+.+.+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~p------------l~r~~~peevA~~~~fLaS~~a~~itG~~l~vdGG 285 (303)
T PLN02730 231 AAKAIGFIDDMIEYSYANAP------------LQKELTADEVGNAAAFLASPLASAITGATIYVDNG 285 (303)
T ss_pred hhhcccccHHHHHHHHhcCC------------CCCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 32210000111111111111 01246789999999999986555667888877655
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-20 Score=167.80 Aligned_cols=219 Identities=14% Similarity=0.082 Sum_probs=154.7
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc-----CC
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV-----AF 166 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~~ 166 (421)
|+||||+|+||.++++.|+++|++|++++|+.+.. ....... .....++.++.+|++|.+++.++++.. ++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 77 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSD---AESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAY 77 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHH---HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999998754311 1111111 112356899999999999998887653 57
Q ss_pred cEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH-----hcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 167 THVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK-----SANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 167 d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~-----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
|++|||||.... ....++++.++++|+.++.++++++. +.+ .++||++||...+. +.+
T Consensus 78 ~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~vsS~~~~~------------~~~ 144 (239)
T TIGR01831 78 YGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQ-GGRIITLASVSGVM------------GNR 144 (239)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeEEEEEcchhhcc------------CCC
Confidence 999999997532 12344567789999999999988752 223 24899999965431 113
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
....|+.+|.+.+.+++.++.+ .|++++.++||.+.++.... .........+.-+. .-+...
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---~~~~~~~~~~~~~~------------~~~~~~ 209 (239)
T TIGR01831 145 GQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAE---VEHDLDEALKTVPM------------NRMGQP 209 (239)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchh---hhHHHHHHHhcCCC------------CCCCCH
Confidence 4568999999999999988766 48999999999998874321 11111222221111 124567
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+|++++++.++........|....+.++
T Consensus 210 ~~va~~~~~l~~~~~~~~~g~~~~~~gg 237 (239)
T TIGR01831 210 AEVASLAGFLMSDGASYVTRQVISVNGG 237 (239)
T ss_pred HHHHHHHHHHcCchhcCccCCEEEecCC
Confidence 9999999999987655566777666654
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-20 Score=171.89 Aligned_cols=204 Identities=15% Similarity=0.128 Sum_probs=146.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|++|||||+|+||.+++++|+++|++|++++|+.+.. ...... ....++.++++|++|.+++.++++.+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~----~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGL----AALAAE-LGAGNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHH----HHHHHH-hcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 36899999999999999999999999999999854321 111111 12357899999999999999887753
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccc-cCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSV-YGLNENVPFSEADR 234 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v-~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... .+.++.+..+++|+.++.++++++.+ .+ .++||++||... ++
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~------------ 142 (260)
T PRK08267 76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATP-GARVINTSSASAIYG------------ 142 (260)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEeCchhhCcC------------
Confidence 579999999986432 12344567899999999999888743 33 248999999754 33
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
......|+.||.+.+.+++.++.+ .|+++++++||.+.++....... ........ .....
T Consensus 143 -~~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~--~~~~~~~~--------------~~~~~ 205 (260)
T PRK08267 143 -QPGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSN--EVDAGSTK--------------RLGVR 205 (260)
T ss_pred -CCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccc--hhhhhhHh--------------hccCC
Confidence 133567999999999999998865 48999999999987653221000 00000000 01113
Q ss_pred ccHHHHHHHHHHhhhcC
Q 043169 312 TYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~ 328 (421)
+.++|+|++++.+++..
T Consensus 206 ~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 206 LTPEDVAEAVWAAVQHP 222 (260)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 56799999999998654
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-20 Score=171.31 Aligned_cols=203 Identities=22% Similarity=0.157 Sum_probs=144.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc------
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV------ 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~------ 164 (421)
|+|+||||+|+||.++++.|+++|++|++++|+.++.+ .....++.++.+|++|.+++.++++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 73 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVA---------RMNSLGFTGILLDLDDPESVERAADEVIALTDN 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhH---------HHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999998543211 111235788999999999888777653
Q ss_pred CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHH----HHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTL----LEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l----~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|.+|||||..... ...++++..+++|+.|+.++ ++.+++.+.. +||++||...+. ..
T Consensus 74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~iv~~ss~~~~~------------~~ 140 (256)
T PRK08017 74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEG-RIVMTSSVMGLI------------ST 140 (256)
T ss_pred CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCC-EEEEEcCccccc------------CC
Confidence 479999999975321 12334557899999998776 5555566543 899999975431 12
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCC-CeEEEecCCCCcceeecc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGK-PITVYRGKNHVDLARDFT 312 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 312 (421)
.....|+.+|.+.|.+.+.++.+ .|+++++++||.+.++... .+.... ..... ..+...+.++
T Consensus 141 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~----------~~~~~~~~~~~~---~~~~~~~~~~ 207 (256)
T PRK08017 141 PGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTD----------NVNQTQSDKPVE---NPGIAARFTL 207 (256)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhh----------cccchhhccchh---hhHHHhhcCC
Confidence 34578999999999988876543 5899999999887654211 111111 01111 1122345689
Q ss_pred cHHHHHHHHHHhhhcC
Q 043169 313 YIDDIVKGCLGSLDTS 328 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~ 328 (421)
+++|+++++..+++++
T Consensus 208 ~~~d~a~~~~~~~~~~ 223 (256)
T PRK08017 208 GPEAVVPKLRHALESP 223 (256)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 9999999999999876
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-20 Score=175.65 Aligned_cols=202 Identities=13% Similarity=0.133 Sum_probs=143.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC--HHHHHHHhh---c
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND--AKLLAKLFD---A 163 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~---~ 163 (421)
.|+.++||||+|+||.+++++|+++|++|++++|+.++.+...++... .....++..+.+|+++ .+.++++.+ .
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~-~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQS-KYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH-HCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999976544333222221 1123467888999985 344444433 3
Q ss_pred cCCcEEEEcccccCc------hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 164 VAFTHVMHLAAQAGV------RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
.++|++|||||.... +...++.+..+++|+.|+.++++++. +.+ .++||++||...+..
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS~a~~~~---------- 199 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGAIINIGSGAAIVI---------- 199 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CcEEEEEechhhccC----------
Confidence 456799999998632 11233445789999999888888764 333 349999999876420
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+..+....|+.||.+.+.+++.++.+. ||++++++||.|-++-.. . ... ...
T Consensus 200 ~~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~-----------~-~~~-------------~~~ 254 (320)
T PLN02780 200 PSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS-----------I-RRS-------------SFL 254 (320)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccc-----------c-cCC-------------CCC
Confidence 011335789999999999999998874 899999999999776211 0 000 011
Q ss_pred cccHHHHHHHHHHhhhc
Q 043169 311 FTYIDDIVKGCLGSLDT 327 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~ 327 (421)
...++++|+.++..+..
T Consensus 255 ~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 255 VPSSDGYARAALRWVGY 271 (320)
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 34689999999999853
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-20 Score=170.78 Aligned_cols=205 Identities=13% Similarity=0.070 Sum_probs=148.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++++++||||+|+||.+++++|+++|++|++++|+.+..+. .........++.++.+|++|.+++.++++..
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEA----LAARLPYPGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH----HHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999996432221 1111112357889999999999988887654
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++.+..+++|+.|+.++++.+.+ .+ .++||++||...+. .
T Consensus 79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~------------~ 145 (263)
T PRK09072 79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQP-SAMVVNVGSTFGSI------------G 145 (263)
T ss_pred CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEecChhhCc------------C
Confidence 579999999975421 12234457889999999999988753 22 23899998865431 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
......|+.+|.+.+.+++.++.+ .|++++++.||.+.++-... . ... .. ........
T Consensus 146 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~----------~-~~~---~~-----~~~~~~~~ 206 (263)
T PRK09072 146 YPGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSE----------A-VQA---LN-----RALGNAMD 206 (263)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhh----------h-ccc---cc-----ccccCCCC
Confidence 134577999999999999988876 47999999999887652110 0 000 00 00011356
Q ss_pred cHHHHHHHHHHhhhcC
Q 043169 313 YIDDIVKGCLGSLDTS 328 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~ 328 (421)
.++|+|++++.+++..
T Consensus 207 ~~~~va~~i~~~~~~~ 222 (263)
T PRK09072 207 DPEDVAAAVLQAIEKE 222 (263)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 7899999999999876
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=167.89 Aligned_cols=219 Identities=15% Similarity=0.142 Sum_probs=149.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc------
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV------ 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~------ 164 (421)
|+++||||+|+||++++++|+++|++|++++|+.++ ...... .....++.++++|++|.++++++++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~---~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENK---ELTKLA--EQYNSNLTFHSLDLQDVHELETNFNEILSSIQE 76 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchH---HHHHHH--hccCCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence 689999999999999999999999999999986421 111111 112356889999999999999888764
Q ss_pred -C--CcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 -A--FTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 -~--~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
. ..++|||||...+ ..+.+++...+++|+.++..+++.+. +.+..++||++||...+.
T Consensus 77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---------- 146 (251)
T PRK06924 77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN---------- 146 (251)
T ss_pred ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC----------
Confidence 1 2289999997543 22334456788999999776666553 323234899999976542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCC-----CChHHHHHHHHHcCCCeEEEecC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGRP-----DMAYFSFTRNILQGKPITVYRGK 302 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
+.++...|+.+|.+.+.+++.++.+ .|++++.|+||.+-++.... .... .....+....+
T Consensus 147 --~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~------- 216 (251)
T PRK06924 147 --PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDF-TNLDRFITLKE------- 216 (251)
T ss_pred --CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccc-hHHHHHHHHhh-------
Confidence 2345678999999999999988765 37999999999887652110 0000 00111111000
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEec
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLG 340 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~ 340 (421)
..-+..++|+|++++.++... ....|..+.+.
T Consensus 217 -----~~~~~~~~dva~~~~~l~~~~-~~~~G~~~~v~ 248 (251)
T PRK06924 217 -----EGKLLSPEYVAKALRNLLETE-DFPNGEVIDID 248 (251)
T ss_pred -----cCCcCCHHHHHHHHHHHHhcc-cCCCCCEeehh
Confidence 012578899999999999864 34556666553
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=170.06 Aligned_cols=211 Identities=17% Similarity=0.127 Sum_probs=145.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
|+++||||+|+||.++++.|+++|++|++++|+.+..+...+... ......+.++.+|++|++++.++++.+ +
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADAR--ALGGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999986532221111111 111223566899999999988888764 5
Q ss_pred CcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|+||||||.... ....++++..+++|+.|+.++++++.. .+..++||++||...+. ..+
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------~~~ 146 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV------------ALP 146 (272)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC------------CCC
Confidence 7999999997532 123344567899999999999998742 22224999999975431 123
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCh-----HHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMA-----YFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
....|+.+|.+.+.+++.++.+ +|+++++++||.+.++....... .......... ....
T Consensus 147 ~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 213 (272)
T PRK07832 147 WHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVD-------------RFRG 213 (272)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHH-------------hccc
Confidence 4567999999999888888754 58999999999999874221000 0000000000 0011
Q ss_pred ecccHHHHHHHHHHhhhcC
Q 043169 310 DFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~ 328 (421)
..+.++|+|++++.+++.+
T Consensus 214 ~~~~~~~vA~~~~~~~~~~ 232 (272)
T PRK07832 214 HAVTPEKAAEKILAGVEKN 232 (272)
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 2478999999999999754
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-20 Score=172.34 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=127.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
|+++||||+|+||.++++.|+++|++|++++|+.+. . ......++.++.+|++|.+++.++++.+ +
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~----~-----~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 72 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAED----V-----EALAAAGFTAVQLDVNDGAALARLAEELEAEHGG 72 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHH----H-----HHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999985421 1 1111235788999999999999888765 6
Q ss_pred CcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh---cCCCCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS---ANPQPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~---~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
+|+||||||..... ...++.+..+++|+.|+.++++++.. .+ .++||++||...+. ..+.
T Consensus 73 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~------------~~~~ 139 (274)
T PRK05693 73 LDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRS-RGLVVNIGSVSGVL------------VTPF 139 (274)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc-CCEEEEECCccccC------------CCCC
Confidence 89999999975321 12344567899999999888888743 22 24899999966432 1134
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 043169 239 ASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGP 275 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~ 275 (421)
...|+.+|.+.+.+++.++.+ +|+++++++||.|.++
T Consensus 140 ~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~ 179 (274)
T PRK05693 140 AGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQ 179 (274)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccc
Confidence 578999999999999988766 5899999999999876
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-20 Score=169.73 Aligned_cols=216 Identities=15% Similarity=0.138 Sum_probs=143.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+|++|||||+|+||+++++.|+++|++|++++|+.+.. ...... .....++.++.+|++|.+++.+++.. ++|+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~id~ 76 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQV----TALRAEAARRGLALRVEKLDLTDAIDRAQAAEW-DVDV 76 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC-CCCE
Confidence 46899999999999999999999999999999864321 111111 11234688999999999999988763 5799
Q ss_pred EEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCC
Q 043169 169 VMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240 (421)
Q Consensus 169 vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~ 240 (421)
||||||..... ...++.+..+++|+.++.++.+.+ ++.+. ++||++||...+. ..+...
T Consensus 77 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS~~~~~------------~~~~~~ 143 (257)
T PRK09291 77 LLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSSMAGLI------------TGPFTG 143 (257)
T ss_pred EEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcChhhcc------------CCCCcc
Confidence 99999975432 122334567889999977666544 45554 4999999975432 113457
Q ss_pred hHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHH
Q 043169 241 LYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 317 (421)
.|+.||.+.|.+++.++.+ .|+++++|+||.+..+... . ....+ ..........+.. .+......+...+|+
T Consensus 144 ~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~-~-~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 218 (257)
T PRK09291 144 AYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFND-T-MAETP-KRWYDPARNFTDP--EDLAFPLEQFDPQEM 218 (257)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchh-h-hhhhh-hhhcchhhHHHhh--hhhhccccCCCHHHH
Confidence 8999999999999888765 5899999999987543211 0 00000 0000000000000 011222345788888
Q ss_pred HHHHHHhhhcC
Q 043169 318 VKGCLGSLDTS 328 (421)
Q Consensus 318 a~a~~~~l~~~ 328 (421)
++.++.++..+
T Consensus 219 ~~~~~~~l~~~ 229 (257)
T PRK09291 219 IDAMVEVIPAD 229 (257)
T ss_pred HHHHHHHhcCC
Confidence 88888887654
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=161.64 Aligned_cols=191 Identities=18% Similarity=0.199 Sum_probs=144.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-CCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-AFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d~v 169 (421)
|+++||||+|+||.++++.|+++ ++|++++|+.. .+++|++|.++++++++.. ++|+|
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~id~l 59 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG--------------------DVQVDITDPASIRALFEKVGKVDAV 59 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC--------------------ceEecCCChHHHHHHHHhcCCCCEE
Confidence 57999999999999999999999 99999998431 4689999999999999876 78999
Q ss_pred EEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHH
Q 043169 170 MHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAA 244 (421)
Q Consensus 170 i~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~ 244 (421)
|||||..... ...+++...+++|+.++.++++++.+.. ..++||++||..... +.+....|+.
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~------------~~~~~~~Y~~ 127 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE------------PIPGGASAAT 127 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC------------CCCCchHHHH
Confidence 9999975321 2234566789999999999999876431 123899999866431 2245678999
Q ss_pred HHHHHHHHHHHHHHH--hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHH
Q 043169 245 TKKAGEEIAHTYNHI--YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL 322 (421)
Q Consensus 245 sK~~~e~~~~~~~~~--~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 322 (421)
+|.+.+.+++.++.+ .|++++.|+||.+-.+... . +. .+. + ..++.++|+|++++
T Consensus 128 sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~~-------~------~~---~~~--~-----~~~~~~~~~a~~~~ 184 (199)
T PRK07578 128 VNGALEGFVKAAALELPRGIRINVVSPTVLTESLEK-------Y------GP---FFP--G-----FEPVPAARVALAYV 184 (199)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchhh-------h------hh---cCC--C-----CCCCCHHHHHHHHH
Confidence 999999999998876 5899999999988554110 0 00 000 0 13678999999999
Q ss_pred HhhhcCCCCCCceEEEec
Q 043169 323 GSLDTSAGPAPYRIFNLG 340 (421)
Q Consensus 323 ~~l~~~~~~~~~~~~~i~ 340 (421)
.+++.. ..|++|+++
T Consensus 185 ~~~~~~---~~g~~~~~~ 199 (199)
T PRK07578 185 RSVEGA---QTGEVYKVG 199 (199)
T ss_pred HHhccc---eeeEEeccC
Confidence 998754 557777653
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=168.49 Aligned_cols=179 Identities=11% Similarity=0.082 Sum_probs=129.4
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC------ChhHHHHHHHh-hcCCceEEEEcccCCHHHHH
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY------DPSLKKARKAL-LNNHGVFVIEGDINDAKLLA 158 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~ 158 (421)
..+++|+++||||+++||.++++.|+++|++|++++|+.... .+......... .....+.++++|++|+++++
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~ 83 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVR 83 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 347899999999999999999999999999999999975322 11111111111 11235778999999999999
Q ss_pred HHhhcc-----CCcEEEEcc-cccC-----ch---hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccc
Q 043169 159 KLFDAV-----AFTHVMHLA-AQAG-----VR---YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSV 220 (421)
Q Consensus 159 ~~~~~~-----~~d~vi~~A-g~~~-----~~---~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v 220 (421)
++++.+ ++|++|||| |... .+ ...++....+++|+.++..+++++.. .+ .++||++||...
T Consensus 84 ~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~-~g~IV~isS~~~ 162 (305)
T PRK08303 84 ALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRP-GGLVVEITDGTA 162 (305)
T ss_pred HHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCC-CcEEEEECCccc
Confidence 888764 689999999 7421 11 11233456789999998887777643 22 249999999643
Q ss_pred -cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 043169 221 -YGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGP 275 (421)
Q Consensus 221 -~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~ 275 (421)
++. ........|+.||.+...+++.++.+. ||++++|.||.|-.+
T Consensus 163 ~~~~----------~~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 163 EYNA----------THYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred cccC----------cCCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 211 011234679999999999999988774 799999999998765
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=165.81 Aligned_cols=214 Identities=18% Similarity=0.174 Sum_probs=149.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC--CHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN--DAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d~~~~~~~~~~~- 164 (421)
+++|+|+||||+|+||.+++++|+++|++|++++|+.+..+....... .....++.++.+|++ +.+++.++++.+
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIE--AAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH--hcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999996532222111111 112345777888886 677766665543
Q ss_pred ----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||.... ....++++..+++|+.|+.++++++. +.+. ++||++||.....
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~-~~iv~~ss~~~~~--------- 157 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPA-ASLVFTSSSVGRQ--------- 157 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC-CEEEEEccHhhcC---------
Confidence 58999999997543 11223456789999999888888774 3443 4999999976432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.......|+.||.+.+.+++.++.+. |+++++++||.+-++-... ..... +.
T Consensus 158 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~----------~~~~~---------~~--- 212 (247)
T PRK08945 158 ---GRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRAS----------AFPGE---------DP--- 212 (247)
T ss_pred ---CCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhh----------hcCcc---------cc---
Confidence 11345679999999999999988764 7999999999887652110 00000 00
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEE
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFN 338 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~ 338 (421)
..+..++|++..++.++........|+++-
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 242 (247)
T PRK08945 213 QKLKTPEDIMPLYLYLMGDDSRRKNGQSFD 242 (247)
T ss_pred cCCCCHHHHHHHHHHHhCccccccCCeEEe
Confidence 125678999999999887654445555543
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=163.04 Aligned_cols=220 Identities=16% Similarity=0.137 Sum_probs=154.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+|+||||+|+||.++++.|+++|++|++++|+.+.. ...........++.++++|++|.+++.+++++.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKL----KRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999964321 111111112246889999999999998888764
Q ss_pred --CCcEEEEcccccCch--hhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccc-cCCCCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR--YAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSV-YGLNENVPFSEADRTDQP 238 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v-~g~~~~~~~~e~~~~~~~ 238 (421)
.+|.+||++|..... ...++.+..+++|+.++..+++.+.+.- ..+++|++||... ++ +..+
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~~~~ 146 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK------------ASPD 146 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc------------CCCC
Confidence 369999999864321 1123445678999999888888765421 1138999998754 21 1234
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
...|+.+|.+.+.+++.++.+. |+++++++||+++++-... . ..... . . . ...++..+
T Consensus 147 ~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~-~----~~~~~---~---~-----~---~~~~~~~~ 207 (238)
T PRK05786 147 QLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPE-R----NWKKL---R---K-----L---GDDMAPPE 207 (238)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCch-h----hhhhh---c---c-----c---cCCCCCHH
Confidence 5679999999999999888764 8999999999999873211 0 00000 0 0 0 11256789
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
|++++++.++........|..+.+.++
T Consensus 208 ~va~~~~~~~~~~~~~~~g~~~~~~~~ 234 (238)
T PRK05786 208 DFAKVIIWLLTDEADWVDGVVIPVDGG 234 (238)
T ss_pred HHHHHHHHHhcccccCccCCEEEECCc
Confidence 999999999976543456777777543
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=166.04 Aligned_cols=198 Identities=16% Similarity=0.150 Sum_probs=140.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
|+++||||+++||.+++++|+ +|++|++++|+.++.++..+.... .....+.++++|++|.++++++++.. +
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 77 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQ--RGATSVHVLSFDAQDLDTHRELVKQTQELAGE 77 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHh--ccCCceEEEEcccCCHHHHHHHHHHHHHhcCC
Confidence 679999999999999999998 599999999976543332222211 11234789999999999998887664 6
Q ss_pred CcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|++|||||...... ...+....+++|+.+...+++.+ .+.+..++||++||...+- +.+
T Consensus 78 id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~~ 145 (246)
T PRK05599 78 ISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR------------ARR 145 (246)
T ss_pred CCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc------------CCc
Confidence 899999999864321 11122356778888876655443 4433234999999976531 123
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
....|+.||.+.+.+++.++.+ .||+++.+.||.|.++-.. ...+. + -...+
T Consensus 146 ~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~-------------~~~~~--------~----~~~~p 200 (246)
T PRK05599 146 ANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTT-------------GMKPA--------P----MSVYP 200 (246)
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhc-------------CCCCC--------C----CCCCH
Confidence 4578999999999999999887 4799999999999875211 00000 0 01468
Q ss_pred HHHHHHHHHhhhcC
Q 043169 315 DDIVKGCLGSLDTS 328 (421)
Q Consensus 315 ~Dva~a~~~~l~~~ 328 (421)
+|+|++++.++...
T Consensus 201 e~~a~~~~~~~~~~ 214 (246)
T PRK05599 201 RDVAAAVVSAITSS 214 (246)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999876
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=184.30 Aligned_cols=224 Identities=14% Similarity=0.086 Sum_probs=156.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
.++|+++||||+++||.++++.|+++|++|++++|+.+..+. .... ...++.++++|++|+++++++++.+
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~----~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARE----RADS--LGPDHHALAMDVSDEAQIREGFEQLHRE 76 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHH--hCCceeEEEeccCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999986542221 1111 1346778999999999999988764
Q ss_pred --CCcEEEEcccccCc------hhhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV------RYAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||...+ ....++++..+++|+.++..+++++.+. +..++||++||.....
T Consensus 77 ~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~---------- 146 (520)
T PRK06484 77 FGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV---------- 146 (520)
T ss_pred hCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCC----------
Confidence 68999999997421 2234456789999999999888887543 2223899999976542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHH-HHHHHcCCCeEEEecCCCCcce
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSF-TRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.+....|+.+|.+.+.+++.++.+ .|+++++|+||.|.++....-...... ...+....+ .
T Consensus 147 --~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~ 212 (520)
T PRK06484 147 --ALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSRIP------------L 212 (520)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhcCC------------C
Confidence 1234578999999999999998877 489999999999877632110000000 000110000 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN 341 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~ 341 (421)
..+..++|++++++.++........|.++.+.+
T Consensus 213 ~~~~~~~~va~~v~~l~~~~~~~~~G~~~~~~g 245 (520)
T PRK06484 213 GRLGRPEEIAEAVFFLASDQASYITGSTLVVDG 245 (520)
T ss_pred CCCcCHHHHHHHHHHHhCccccCccCceEEecC
Confidence 125678999999999887653444555555543
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=164.56 Aligned_cols=165 Identities=21% Similarity=0.137 Sum_probs=127.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc-------
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA------- 163 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~------- 163 (421)
|+++||||+|+||.+++++|+++|++|++++|+.+.. . ......++.++++|++|.+++++++++
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~------~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 73 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS------L--AAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFV 73 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh------h--hhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999865421 1 111234688999999999999886644
Q ss_pred --cCCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccccCCCCCCCCCCCC
Q 043169 164 --VAFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 164 --~~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
.++|++|||||..... ...++++..+++|+.|+..+++.+.+.. ..++||++||...+.
T Consensus 74 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------- 142 (243)
T PRK07023 74 DGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN----------- 142 (243)
T ss_pred cCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC-----------
Confidence 2579999999975431 1233456789999999777776664321 124999999987653
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH--hCCcEEEEEeccccCC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI--YGLSITGLRFFTVYGP 275 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~--~gi~~~~vrp~~v~G~ 275 (421)
+..+...|+.+|.+.|.+++.++.+ .|+++++|+||.+-++
T Consensus 143 -~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 143 -AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 2245678999999999999998865 5899999999998665
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=166.65 Aligned_cols=212 Identities=15% Similarity=0.090 Sum_probs=144.6
Q ss_pred EEEEEcCCChhHHHHHHHHHH----CCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 92 SVLVTGAAGFVGTHVSLALKK----RGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
.++||||+++||.+++++|++ .|++|++++|+.+..+........ .....++.++.+|++|.++++++++.+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~-~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGA-ERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHh-cCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 799999999975543332222211 112346889999999999998888654
Q ss_pred ------CCcEEEEcccccCch---h----hccCCchhhhhhHHHHHHHHHHHHh----c-CCCCeEEEEccccccCCCCC
Q 043169 165 ------AFTHVMHLAAQAGVR---Y----AMQNPHSYVHSNIAGLVTLLEACKS----A-NPQPSIVWASSSSVYGLNEN 226 (421)
Q Consensus 165 ------~~d~vi~~Ag~~~~~---~----~~~~~~~~~~~N~~g~~~l~~~~~~----~-~~~~riV~~SS~~v~g~~~~ 226 (421)
..|+||||||..... . ..++.+..+++|+.|+..+++.+.+ . +..++||++||...+.
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~---- 156 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ---- 156 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC----
Confidence 136999999975321 1 1234467899999998777776633 2 2224899999976542
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC---CChHHHHHHHHHcCCCeEEEe
Q 043169 227 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP---DMAYFSFTRNILQGKPITVYR 300 (421)
Q Consensus 227 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~ 300 (421)
+.+....|+.||.+.+.+++.++.+ .|+++++++||.|-++.... ...-+.....+....+
T Consensus 157 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~----- 223 (256)
T TIGR01500 157 --------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELKA----- 223 (256)
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHHh-----
Confidence 2234578999999999999999877 47999999999997652110 0000000011111100
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
..-+..++|+|.+++.++++.
T Consensus 224 -------~~~~~~p~eva~~~~~l~~~~ 244 (256)
T TIGR01500 224 -------KGKLVDPKVSAQKLLSLLEKD 244 (256)
T ss_pred -------cCCCCCHHHHHHHHHHHHhcC
Confidence 112567899999999999643
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-20 Score=152.80 Aligned_cols=225 Identities=20% Similarity=0.225 Sum_probs=169.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-CC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-AF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 166 (421)
+.|+.|++||+.-+||+++++.|++.|++|+.+.|++... ...-.....-+..+.+|+.+.+.+.+.+..+ .+
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L------~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pi 78 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANL------LSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPI 78 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHH------HHHHhhCCcceeeeEecccHHHHHHHhhcccCch
Confidence 6899999999999999999999999999999999954321 1111223344889999999999998888776 67
Q ss_pred cEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 167 THVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 167 d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
|.++||||+... ..++++.+..|++|+.+..++.+.+. ..++++.||++||.+.. .+...
T Consensus 79 dgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~------------R~~~n 146 (245)
T KOG1207|consen 79 DGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI------------RPLDN 146 (245)
T ss_pred hhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc------------cccCC
Confidence 999999998632 34677888999999999888888743 34556689999997652 23355
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
.+.|+.+|.+...+.+.++-+. +|++..+.|..|...-+..++.-+.--+.++..-|+ --|..++
T Consensus 147 HtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K~k~mL~riPl------------~rFaEV~ 214 (245)
T KOG1207|consen 147 HTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRIPL------------KRFAEVD 214 (245)
T ss_pred ceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchhccchhhhCch------------hhhhHHH
Confidence 6889999999999999999885 599999999999875332222112222223333222 1378899
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.++.|++.+|...++-..|....+.+|
T Consensus 215 eVVnA~lfLLSd~ssmttGstlpveGG 241 (245)
T KOG1207|consen 215 EVVNAVLFLLSDNSSMTTGSTLPVEGG 241 (245)
T ss_pred HHHhhheeeeecCcCcccCceeeecCC
Confidence 999999999988766666777766554
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=188.33 Aligned_cols=175 Identities=19% Similarity=0.153 Sum_probs=136.4
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
...+++++|||||+|+||++++++|+++|++|++++|+.+..++...... ....++.++.+|++|++++.++++.+
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 387 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIR---AAGAVAHAYRVDVSDADAMEAFAEWVR 387 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999996533222211111 12346889999999999999988765
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||+.... .+.++.+..+++|+.|+.++++++. +.+..++||++||.+.|..
T Consensus 388 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--------- 458 (582)
T PRK05855 388 AEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAP--------- 458 (582)
T ss_pred HhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC---------
Confidence 589999999986432 2334566789999999988888763 3332349999999887742
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGP 275 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~ 275 (421)
......|+.||.+.+.+++.++.+ +||++++|+||.|-++
T Consensus 459 ---~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 459 ---SRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 235678999999999999998876 4899999999999775
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=154.89 Aligned_cols=225 Identities=17% Similarity=0.132 Sum_probs=158.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
..||.+++|||.|+||..++++|+++|..+.+++-+.+..+. ....+...+...+.|+++|+++..+++++++++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a--~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~ 80 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEA--IAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT 80 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHH--HHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHH
Confidence 579999999999999999999999999988777665554211 112223346678999999999999999999886
Q ss_pred --CCcEEEEcccccCchhhccCCchhhhhhHHH----HHHHHHHHHhc--CCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAG----LVTLLEACKSA--NPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g----~~~l~~~~~~~--~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
.+|++||+||+.. +.+.+.++.+|+.| |...+++..+. |..+-||++||..... |.
T Consensus 81 fg~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~------------P~ 144 (261)
T KOG4169|consen 81 FGTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLD------------PM 144 (261)
T ss_pred hCceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccC------------cc
Confidence 7899999999975 57889999999888 55556655432 3445899999976542 32
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCChHHHHHHHHHc-CCCeEEEecCCCCcceee
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ-GKPITVYRGKNHVDLARD 310 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 310 (421)
+....|++||+..-.|.++++.. .|+++..++||.+-.. ++..+.+ +.....-..--+.=.+..
T Consensus 145 p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~----------l~~~~~~~~~~~e~~~~~~~~l~~~~ 214 (261)
T KOG4169|consen 145 PVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTD----------LAENIDASGGYLEYSDSIKEALERAP 214 (261)
T ss_pred ccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHH----------HHHHHHhcCCcccccHHHHHHHHHcc
Confidence 44567999999999999987643 5999999999976542 2222211 111000000000000111
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
-....+|++.++.+++.+ .+|.+|-+..+.
T Consensus 215 ~q~~~~~a~~~v~aiE~~---~NGaiw~v~~g~ 244 (261)
T KOG4169|consen 215 KQSPACCAINIVNAIEYP---KNGAIWKVDSGS 244 (261)
T ss_pred cCCHHHHHHHHHHHHhhc---cCCcEEEEecCc
Confidence 234588999999999875 567888887764
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=186.64 Aligned_cols=203 Identities=17% Similarity=0.152 Sum_probs=151.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+++||||+|+||.++++.|+++|++|++++|+.+..++...... ....++.++.+|++|.++++++++.+
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 444 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIR---AKGGTAHAYTCDLTDSAAVDHTVKDILA 444 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999996543222211111 12356889999999999999988764
Q ss_pred ---CCcEEEEcccccCchh---h---ccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY---A---MQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~---~---~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||...... . .++++..+++|+.|+.++++++ ++.+. ++||++||.+.+..
T Consensus 445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~-------- 515 (657)
T PRK07201 445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRF-GHVVNVSSIGVQTN-------- 515 (657)
T ss_pred hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CEEEEECChhhcCC--------
Confidence 6899999999753211 1 1345678999999988887765 34443 49999999887642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.+....|+.||.+.+.+++.++.+ .|+++++|+||.|.++-..+.. .+ ..
T Consensus 516 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~----------------~~-------~~ 568 (657)
T PRK07201 516 ----APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTK----------------RY-------NN 568 (657)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCccc----------------cc-------cC
Confidence 234578999999999999998876 4899999999999887322110 00 01
Q ss_pred eecccHHHHHHHHHHhhhcC
Q 043169 309 RDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~ 328 (421)
...+.++++|+.++..+...
T Consensus 569 ~~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 569 VPTISPEEAADMVVRAIVEK 588 (657)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 12567899999999987654
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-19 Score=161.35 Aligned_cols=171 Identities=13% Similarity=0.136 Sum_probs=127.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+++||||+++||.+++++|+++|++|+++.|+.+..++..+.... ....+..+.+|++|+++++++++.+
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSA---LTDNVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCCeEEEEccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999966543333222211 1345778899999999998887643
Q ss_pred ----CCcEEEEcccccCch--h---hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR--Y---AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~--~---~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||..... . ..++....+++|+.+...+++.+ ++.+..++||++||...+
T Consensus 79 ~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~---------- 148 (227)
T PRK08862 79 QFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH---------- 148 (227)
T ss_pred HhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC----------
Confidence 689999999853221 1 12233456778888876665544 333323499999996432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGP 275 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~ 275 (421)
.....|+.+|.+.+.+++.++.+ +|++++.|.||.+-.+
T Consensus 149 -----~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 -----QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 23567999999999999999876 4899999999998876
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=157.27 Aligned_cols=202 Identities=19% Similarity=0.137 Sum_probs=147.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---CCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---AFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---~~d 167 (421)
|+++||||+|+||++++++|+++|++|++++|+.+.. +. ....++.++.+|++|.++++++++.. ++|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~----~~-----~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAAL----AA-----LQALGAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHH----HH-----HHhccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 6899999999999999999999999999999864321 11 11234678999999999998876544 589
Q ss_pred EEEEcccccCch------hhccCCchhhhhhHHHHHHHHHHHHhc--CCCCeEEEEcccc-ccCCCCCCCCCCCCCCCCC
Q 043169 168 HVMHLAAQAGVR------YAMQNPHSYVHSNIAGLVTLLEACKSA--NPQPSIVWASSSS-VYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 168 ~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~l~~~~~~~--~~~~riV~~SS~~-v~g~~~~~~~~e~~~~~~~ 238 (421)
+||||||..... .+.++++..+++|+.++.++++++.+. ...+++|++||.. .++.. +..+
T Consensus 73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~----------~~~~ 142 (222)
T PRK06953 73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA----------TGTT 142 (222)
T ss_pred EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc----------cCCC
Confidence 999999986321 134456788999999999999988642 1123899999864 44321 1112
Q ss_pred CChHHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHIY-GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~-gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 317 (421)
...|+.+|.+.+.+++.++.++ +++++.++||.+..+... . ...+..++.
T Consensus 143 ~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~-------------~----------------~~~~~~~~~ 193 (222)
T PRK06953 143 GWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG-------------A----------------QAALDPAQS 193 (222)
T ss_pred ccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC-------------C----------------CCCCCHHHH
Confidence 2469999999999999988765 799999999999876221 0 013456888
Q ss_pred HHHHHHhhhcCCCCCCceEEEec
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLG 340 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~ 340 (421)
+..+..++........+..|...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~ 216 (222)
T PRK06953 194 VAGMRRVIAQATRRDNGRFFQYD 216 (222)
T ss_pred HHHHHHHHHhcCcccCceEEeeC
Confidence 99998887765444445555443
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-19 Score=175.91 Aligned_cols=224 Identities=20% Similarity=0.145 Sum_probs=156.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++++++||||+|+||.++++.|+++|++|+++++... .+...... ...+..++.+|++|.++++++++.+
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~--~~~l~~~~----~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA--GEALAAVA----NRVGGTALALDITAPDAPARIAEHLAER 281 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc--HHHHHHHH----HHcCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999987422 11111111 1123568899999999998888754
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCC---CCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANP---QPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~---~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++++..+++|+.|+.++.+++..... .++||++||...+. .
T Consensus 282 ~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~------------g 349 (450)
T PRK08261 282 HGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIA------------G 349 (450)
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC------------C
Confidence 589999999976431 23344567899999999999999865321 24899999976532 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
......|+.+|.+.+.+++.++.+ .|++++++.||.+-.+-... ++......... ... .....
T Consensus 350 ~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~---~~~~~~~~~~~--~~~---------l~~~~ 415 (450)
T PRK08261 350 NRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA---IPFATREAGRR--MNS---------LQQGG 415 (450)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc---cchhHHHHHhh--cCC---------cCCCC
Confidence 234578999999999998888765 48999999999986542110 01111111110 000 11123
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..+|+|++++.++........|+++.++++.
T Consensus 416 ~p~dva~~~~~l~s~~~~~itG~~i~v~g~~ 446 (450)
T PRK08261 416 LPVDVAETIAWLASPASGGVTGNVVRVCGQS 446 (450)
T ss_pred CHHHHHHHHHHHhChhhcCCCCCEEEECCCc
Confidence 4689999999998765556678888887643
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=168.37 Aligned_cols=230 Identities=13% Similarity=0.056 Sum_probs=145.6
Q ss_pred EEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----CCc
Q 043169 94 LVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----AFT 167 (421)
Q Consensus 94 lITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~~d 167 (421)
+||||+++||.+++++|+++| ++|++.+|+.+..+...... ......+.++.+|++|.++++++++.+ ++|
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l---~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 77 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSA---GMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLD 77 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh---cCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCC
Confidence 599999999999999999999 99999998653222111111 012346788999999999998888754 589
Q ss_pred EEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCC-CCeEEEEccccccCCC-----CC-CCCC-
Q 043169 168 HVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANP-QPSIVWASSSSVYGLN-----EN-VPFS- 230 (421)
Q Consensus 168 ~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~-~~riV~~SS~~v~g~~-----~~-~~~~- 230 (421)
+||||||+... ..+.++.+..+++|+.|+.++++++ ++.+. .++||++||...+-.. .. ..+.
T Consensus 78 ~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~ 157 (308)
T PLN00015 78 VLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 157 (308)
T ss_pred EEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhh
Confidence 99999998532 1233456688999999987776665 33321 2499999997654110 00 0000
Q ss_pred ---------CC-------CCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCC-CCCChHHHHHHH
Q 043169 231 ---------EA-------DRTDQPASLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVYGPWG-RPDMAYFSFTRN 289 (421)
Q Consensus 231 ---------e~-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~G~~~-~~~~~~~~~~~~ 289 (421)
+. .....+...|+.||++.+.++++++++ .||++++++||.|..... ............
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~~~~~ 237 (308)
T PLN00015 158 LRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFP 237 (308)
T ss_pred hhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccHHHHHHHH
Confidence 00 011134577999999988888888776 379999999999954322 111111000000
Q ss_pred HHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEE
Q 043169 290 ILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFN 338 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~ 338 (421)
.....+ ...+..+++.|+.++.++........|..|.
T Consensus 238 ~~~~~~------------~~~~~~pe~~a~~~~~l~~~~~~~~~G~~~~ 274 (308)
T PLN00015 238 PFQKYI------------TKGYVSEEEAGKRLAQVVSDPSLTKSGVYWS 274 (308)
T ss_pred HHHHHH------------hcccccHHHhhhhhhhhccccccCCCccccc
Confidence 000000 0014568999999998877653333444443
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-19 Score=160.87 Aligned_cols=227 Identities=22% Similarity=0.193 Sum_probs=159.0
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEEc
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHL 172 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~~ 172 (421)
|+|+||+|.+|+++++.|++.+++|.++.|+.+ ......+...+++++.+|+.|.+++.++++++ |.||++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~-------~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~--d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS-------SDRAQQLQALGAEVVEADYDDPESLVAALKGV--DAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH-------HHHHHHHHHTTTEEEES-TT-HHHHHHHHTTC--SEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc-------hhhhhhhhcccceEeecccCCHHHHHHHHcCC--ceEEee
Confidence 799999999999999999999999999999651 11222233467889999999999999999998 999998
Q ss_pred ccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 043169 173 AAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEI 252 (421)
Q Consensus 173 Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~ 252 (421)
-+... ..-.....+++++|++.|++ +||+.|....+... . ...|....-..|...|.+
T Consensus 72 ~~~~~------------~~~~~~~~~li~Aa~~agVk-~~v~ss~~~~~~~~--------~-~~~p~~~~~~~k~~ie~~ 129 (233)
T PF05368_consen 72 TPPSH------------PSELEQQKNLIDAAKAAGVK-HFVPSSFGADYDES--------S-GSEPEIPHFDQKAEIEEY 129 (233)
T ss_dssp SSCSC------------CCHHHHHHHHHHHHHHHT-S-EEEESEESSGTTTT--------T-TSTTHHHHHHHHHHHHHH
T ss_pred cCcch------------hhhhhhhhhHHHhhhccccc-eEEEEEeccccccc--------c-cccccchhhhhhhhhhhh
Confidence 87542 23355678999999999975 99865544443100 0 112233444678888877
Q ss_pred HHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHH--HHHcCC-CeEEEecCCCCcceeecc-cHHHHHHHHHHhhhcC
Q 043169 253 AHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTR--NILQGK-PITVYRGKNHVDLARDFT-YIDDIVKGCLGSLDTS 328 (421)
Q Consensus 253 ~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~i-~v~Dva~a~~~~l~~~ 328 (421)
+++ .++++++||||..+..... .+.. ...... .+.++ ++++....++ +.+|+++++..++..+
T Consensus 130 l~~----~~i~~t~i~~g~f~e~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Dvg~~va~il~~p 196 (233)
T PF05368_consen 130 LRE----SGIPYTIIRPGFFMENLLP------PFAPVVDIKKSKDVVTLP---GPGNQKAVPVTDTRDVGRAVAAILLDP 196 (233)
T ss_dssp HHH----CTSEBEEEEE-EEHHHHHT------TTHHTTCSCCTSSEEEEE---TTSTSEEEEEEHHHHHHHHHHHHHHSG
T ss_pred hhh----ccccceeccccchhhhhhh------hhcccccccccceEEEEc---cCCCccccccccHHHHHHHHHHHHcCh
Confidence 766 4999999999987643110 0011 011111 23343 4556556664 9999999999999987
Q ss_pred CCCCCceEEEecCCCccCHHHHHHHHHHHhCCcccc
Q 043169 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKK 364 (421)
Q Consensus 329 ~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~ 364 (421)
.....+..+.+++ +.+|++|+++.+++.+|++.++
T Consensus 197 ~~~~~~~~~~~~~-~~~t~~eia~~~s~~~G~~v~y 231 (233)
T PF05368_consen 197 EKHNNGKTIFLAG-ETLTYNEIAAILSKVLGKKVKY 231 (233)
T ss_dssp GGTTEEEEEEEGG-GEEEHHHHHHHHHHHHTSEEEE
T ss_pred HHhcCCEEEEeCC-CCCCHHHHHHHHHHHHCCccEE
Confidence 3322578888875 7799999999999999997654
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=156.38 Aligned_cols=168 Identities=18% Similarity=0.116 Sum_probs=127.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---CCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---AFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---~~d 167 (421)
|+|+||||+|+||++++++|+++|++|++++|+.+..+. .. ...++.++.+|++|.++++++++.+ ++|
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~----~~----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTA----LQ----ALPGVHIEKLDMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHH----HH----hccccceEEcCCCCHHHHHHHHHHhhcCCCC
Confidence 689999999999999999999999999999997653211 11 1236788899999999998888764 689
Q ss_pred EEEEcccccCch------hhccCCchhhhhhHHHHHHHHHHHHhcC--CCCeEEEEccccccCCCCCCCCCCCCCCCCCC
Q 043169 168 HVMHLAAQAGVR------YAMQNPHSYVHSNIAGLVTLLEACKSAN--PQPSIVWASSSSVYGLNENVPFSEADRTDQPA 239 (421)
Q Consensus 168 ~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~ 239 (421)
+||||||..... ...++....+++|+.++..+++++.+.. ..++++++||.... ... .+....
T Consensus 74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~--~~~-------~~~~~~ 144 (225)
T PRK08177 74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGS--VEL-------PDGGEM 144 (225)
T ss_pred EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccc--ccc-------CCCCCc
Confidence 999999985321 1233455788999999999988875431 11388888885322 110 111234
Q ss_pred ChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 043169 240 SLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGP 275 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~ 275 (421)
..|+.+|.+.+.+++.++++ .|++++.++||.+-.+
T Consensus 145 ~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 145 PLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence 57999999999999999876 4799999999999876
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=160.85 Aligned_cols=232 Identities=10% Similarity=-0.006 Sum_probs=145.1
Q ss_pred CCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCC---------CCCCh--hH-----H-----HHHHHhhcCCc
Q 043169 87 RSGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFN---------NYYDP--SL-----K-----KARKALLNNHG 143 (421)
Q Consensus 87 ~~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~--~~-----~-----~~~~~~~~~~~ 143 (421)
.++||+++|||++ .+||.++|+.|+++|++|++.++.. +.... .. . +.......-..
T Consensus 5 ~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~ 84 (299)
T PRK06300 5 DLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDT 84 (299)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCC
Confidence 4789999999995 9999999999999999999976531 00000 00 0 00000000011
Q ss_pred eEEEEcccCC--------HHHHHHHhhcc-----CCcEEEEcccccC---c---hhhccCCchhhhhhHHHHHHHHHHHH
Q 043169 144 VFVIEGDIND--------AKLLAKLFDAV-----AFTHVMHLAAQAG---V---RYAMQNPHSYVHSNIAGLVTLLEACK 204 (421)
Q Consensus 144 v~~~~~Dl~d--------~~~~~~~~~~~-----~~d~vi~~Ag~~~---~---~~~~~~~~~~~~~N~~g~~~l~~~~~ 204 (421)
.+-+.+|+.+ .++++++++.+ ++|++|||||... . ..+.++++..+++|+.|..++++++.
T Consensus 85 ~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~ 164 (299)
T PRK06300 85 PEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFG 164 (299)
T ss_pred CEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2222233322 13455555443 6899999998642 1 22345667889999999999988875
Q ss_pred hcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCC
Q 043169 205 SANP-QPSIVWASSSSVYGLNENVPFSEADRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 205 ~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~G~~~~ 278 (421)
+.-. .++||++||....- ..+.. ..|+.||.+.+.+++.++.+ +||+++.|.||.+..+-..
T Consensus 165 p~m~~~G~ii~iss~~~~~------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~ 232 (299)
T PRK06300 165 PIMNPGGSTISLTYLASMR------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGK 232 (299)
T ss_pred HHhhcCCeEEEEeehhhcC------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhh
Confidence 4321 23899998865421 11222 37999999999999999876 3899999999999876321
Q ss_pred CCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 279 PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.-..............+ ..-+..++|++.+++.++........|+++.+.++
T Consensus 233 ~~~~~~~~~~~~~~~~p------------~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG 284 (299)
T PRK06300 233 AIGFIERMVDYYQDWAP------------LPEPMEAEQVGAAAAFLVSPLASAITGETLYVDHG 284 (299)
T ss_pred cccccHHHHHHHHhcCC------------CCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 10000111111111111 11245789999999999876545677888888665
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-18 Score=155.11 Aligned_cols=208 Identities=13% Similarity=0.054 Sum_probs=145.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-CCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-AFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d 167 (421)
|+|+||||+|+||++++++|+++| ..|+...|+.... ....++.++++|++|.++++++.+.. ++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~~Dls~~~~~~~~~~~~~~id 69 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-----------FQHDNVQWHALDVTDEAEIKQLSEQFTQLD 69 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-----------cccCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 589999999999999999999986 5565555533210 12357889999999999988877655 679
Q ss_pred EEEEcccccCch-----h-----hccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 168 HVMHLAAQAGVR-----Y-----AMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 168 ~vi~~Ag~~~~~-----~-----~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
+||||||..... . ..+.....+++|+.++..+++.+.+ .+. ++++++||... ....
T Consensus 70 ~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~-~~i~~iss~~~--~~~~------- 139 (235)
T PRK09009 70 WLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSES-AKFAVISAKVG--SISD------- 139 (235)
T ss_pred EEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCC-ceEEEEeeccc--cccc-------
Confidence 999999986421 0 1122346789999998877777643 222 38999987431 1000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
....+...|+.+|++.+.+++.++.+ .+++++.|.||.+.++.... +.... ..
T Consensus 140 ~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~----------~~~~~------------~~ 197 (235)
T PRK09009 140 NRLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP----------FQQNV------------PK 197 (235)
T ss_pred CCCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc----------hhhcc------------cc
Confidence 01134568999999999999999866 37999999999998763221 00101 01
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN 341 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~ 341 (421)
..+..++|+|++++.++........|..+.+.+
T Consensus 198 ~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g 230 (235)
T PRK09009 198 GKLFTPEYVAQCLLGIIANATPAQSGSFLAYDG 230 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCChhhCCcEEeeCC
Confidence 125688999999999998764445566665543
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-18 Score=156.28 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=130.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+++|+++||||+|+||++++++|+++|++|++++|+.... .. .. ......++.+|++|.+++.+.+.. +|
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~---~~---~~--~~~~~~~~~~D~~~~~~~~~~~~~--iD 81 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINN---SE---SN--DESPNEWIKWECGKEESLDKQLAS--LD 81 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhh---hh---hh--ccCCCeEEEeeCCCHHHHHHhcCC--CC
Confidence 5789999999999999999999999999999999865211 11 01 111236789999999999887765 59
Q ss_pred EEEEcccccCc-hhhccCCchhhhhhHHHHHHHHHHHHhcC------CCCeEEEEccccccCCCCCCCCCCCCCCCCCCC
Q 043169 168 HVMHLAAQAGV-RYAMQNPHSYVHSNIAGLVTLLEACKSAN------PQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240 (421)
Q Consensus 168 ~vi~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~~------~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~ 240 (421)
++|||||.... ..+.++++..+++|+.|+.++++++.+.. ..+.++..||.+.+. + ....
T Consensus 82 ilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~------------~-~~~~ 148 (245)
T PRK12367 82 VLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ------------P-ALSP 148 (245)
T ss_pred EEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC------------C-CCCc
Confidence 99999997432 22345677889999999999999874321 111344444543321 1 2345
Q ss_pred hHHHHHHHHHHHH---HHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 241 LYAATKKAGEEIA---HTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 241 ~Y~~sK~~~e~~~---~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
.|+.||.+.+.+. +++..+ .++.+..+.||.+..+-. + ...+.+
T Consensus 149 ~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~-----------------~-------------~~~~~~ 198 (245)
T PRK12367 149 SYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELN-----------------P-------------IGIMSA 198 (245)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccC-----------------c-------------cCCCCH
Confidence 6999999975433 333322 478888888877643310 0 014568
Q ss_pred HHHHHHHHHhhhcC
Q 043169 315 DDIVKGCLGSLDTS 328 (421)
Q Consensus 315 ~Dva~a~~~~l~~~ 328 (421)
+|+|+.++.++.+.
T Consensus 199 ~~vA~~i~~~~~~~ 212 (245)
T PRK12367 199 DFVAKQILDQANLG 212 (245)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999766
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=143.49 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=131.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
..|.+||||||++|||.++++++.+.|.+|++..|++++.++ .....+.+....||+.|.++.+++++..
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e-------~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~ 75 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAE-------AKAENPEIHTEVCDVADRDSRRELVEWLKKE 75 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHH-------HHhcCcchheeeecccchhhHHHHHHHHHhh
Confidence 578999999999999999999999999999999996543222 2234478889999999999888777654
Q ss_pred --CCcEEEEcccccCc------hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV------RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
.+++||||||+... +...++.+..+.+|+.++..|..+.. +.. ..-||++||.-.|-
T Consensus 76 ~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~-~a~IInVSSGLafv---------- 144 (245)
T COG3967 76 YPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQP-EATIINVSSGLAFV---------- 144 (245)
T ss_pred CCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CceEEEeccccccC----------
Confidence 58999999999743 22233445678999999877777663 333 34899999987663
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGP 275 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~ 275 (421)
|....-.|+.+|++...+...++++ .++.|.=+-|+.|-.+
T Consensus 145 --Pm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 145 --PMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred --cccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 2233456999999999998888866 4799999999998875
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-18 Score=155.47 Aligned_cols=210 Identities=16% Similarity=0.122 Sum_probs=159.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
.+|+||||+.+||..++.++..+|++|.++.|+.++..++.++...... -..|.+..+|+.|.+++...+++. .
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~-~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQ-VEDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhc-cceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 6899999999999999999999999999999988777666655433321 123779999999999999999887 6
Q ss_pred CcEEEEcccccCchhh----ccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVRYA----MQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|.+|||||..-+... ....+..+++|..|+.++++++... ...++|+.+||.... .+..
T Consensus 113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~------------~~i~ 180 (331)
T KOG1210|consen 113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAM------------LGIY 180 (331)
T ss_pred cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhh------------cCcc
Confidence 8999999999765433 2334568999999999999987433 212389999996542 1235
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC-CChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP-DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
..+.|+.+|.+...++.+++++ +|++++..-|+.+-.|+... +...|...+ +..+ .-+.+.
T Consensus 181 GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~tkP~~t~---------ii~g------~ss~~~ 245 (331)
T KOG1210|consen 181 GYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERENKTKPEETK---------IIEG------GSSVIK 245 (331)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccccccCchhee---------eecC------CCCCcC
Confidence 6899999999999999999988 58999999999999986542 222222222 2111 113467
Q ss_pred HHHHHHHHHHhhhcC
Q 043169 314 IDDIVKGCLGSLDTS 328 (421)
Q Consensus 314 v~Dva~a~~~~l~~~ 328 (421)
.+++|.+++.-+.+.
T Consensus 246 ~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 246 CEEMAKAIVKGMKRG 260 (331)
T ss_pred HHHHHHHHHhHHhhc
Confidence 799999999877765
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-19 Score=150.06 Aligned_cols=167 Identities=17% Similarity=0.132 Sum_probs=130.2
Q ss_pred CCCEEEEEcCC-ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 89 GGMSVLVTGAA-GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 89 ~~k~vlITG~s-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+.|.||||||+ ||||.++++++.++|+.|++..|+-+..+. .....++...++|+++++++.++..++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~--------L~~~~gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQ--------LAIQFGLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhh--------HHHhhCCeeEEeccCChHHHHHHHHHHhhC
Confidence 56889999976 789999999999999999999996543222 112357899999999999988877654
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhc--CCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSA--NPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~--~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|++|||||.... +....+.+.++++|+.|..++.+++... ..++.||++.|..+|- +
T Consensus 78 ~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v------------p 145 (289)
T KOG1209|consen 78 PDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV------------P 145 (289)
T ss_pred CCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe------------c
Confidence 58999999998532 2233345689999999988888776421 1234999999988763 3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGP 275 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~ 275 (421)
.+..+.|.+||++...+++.++-+ +|++|+.+-+|.|-..
T Consensus 146 fpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~ 188 (289)
T KOG1209|consen 146 FPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATD 188 (289)
T ss_pred cchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceecc
Confidence 345688999999999999988755 6999999999988654
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=159.36 Aligned_cols=218 Identities=17% Similarity=0.166 Sum_probs=156.2
Q ss_pred cCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc------CCcE
Q 043169 97 GAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV------AFTH 168 (421)
Q Consensus 97 G~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~------~~d~ 168 (421)
|++ ++||.+++++|+++|++|++.+|+.+..+........+ .+..++.+|++|.++++++++.+ ++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKE----YGAEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHH----TTSEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHH----cCCceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 666 99999999999999999999999765332223322222 23447999999999999888663 6899
Q ss_pred EEEcccccCc-----h---hhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCCCC
Q 043169 169 VMHLAAQAGV-----R---YAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQPA 239 (421)
Q Consensus 169 vi~~Ag~~~~-----~---~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~ 239 (421)
+|||||.... + ...+++...+++|+.+...+++++.+.. ..++||++||..... +.+..
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~------------~~~~~ 144 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR------------PMPGY 144 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS------------BSTTT
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc------------cCccc
Confidence 9999998654 1 1234456789999999888888774321 013899999986532 22455
Q ss_pred ChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 240 SLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
..|+.+|.+.+.+++.++.+ +||++++|.||.+..+..........+.....+.-|+ .-+..++
T Consensus 145 ~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl------------~r~~~~~ 212 (241)
T PF13561_consen 145 SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPL------------GRLGTPE 212 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTT------------SSHBEHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhcc------------CCCcCHH
Confidence 68999999999999988765 4899999999999876211000112333333333332 1255789
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
|+|.+++.++........|+++.+.+|
T Consensus 213 evA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 213 EVANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp HHHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred HHHHHHHHHhCccccCccCCeEEECCC
Confidence 999999999987766788999998765
|
... |
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=159.88 Aligned_cols=190 Identities=17% Similarity=0.124 Sum_probs=131.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
++++|+|+||||+|+||++++++|+++|++|++++|+.+.. ..... .....+..+.+|++|.+++.+.+.++
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l----~~~~~--~~~~~v~~v~~Dvsd~~~v~~~l~~I-- 246 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKI----TLEIN--GEDLPVKTLHWQVGQEAALAELLEKV-- 246 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHh--hcCCCeEEEEeeCCCHHHHHHHhCCC--
Confidence 46789999999999999999999999999999999854321 11111 11234678899999999999888755
Q ss_pred cEEEEcccccCc-hhhccCCchhhhhhHHHHHHHHHHHHh----cCC---CCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 167 THVMHLAAQAGV-RYAMQNPHSYVHSNIAGLVTLLEACKS----ANP---QPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 167 d~vi~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~---~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
|++|||||.... ..+.++.+..+++|+.|+.++++++.+ .+. ...+|++|++.. .+ ..
T Consensus 247 DiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-------------~~-~~ 312 (406)
T PRK07424 247 DILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-------------NP-AF 312 (406)
T ss_pred CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-------------cC-CC
Confidence 999999997532 223345678899999999999998743 221 124566654321 11 22
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV 318 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 318 (421)
...|+.||.+.+.+..-.+.+.++.+..+.||.+..+ . . + ...+.++|+|
T Consensus 313 ~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~-----~-----------~-~-------------~~~~spe~vA 362 (406)
T PRK07424 313 SPLYELSKRALGDLVTLRRLDAPCVVRKLILGPFKSN-----L-----------N-P-------------IGVMSADWVA 362 (406)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCcCC-----C-----------C-c-------------CCCCCHHHHH
Confidence 3569999999998864333334666666666543221 0 0 0 0136789999
Q ss_pred HHHHHhhhcC
Q 043169 319 KGCLGSLDTS 328 (421)
Q Consensus 319 ~a~~~~l~~~ 328 (421)
+.++.+++.+
T Consensus 363 ~~il~~i~~~ 372 (406)
T PRK07424 363 KQILKLAKRD 372 (406)
T ss_pred HHHHHHHHCC
Confidence 9999999876
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=160.00 Aligned_cols=262 Identities=19% Similarity=0.171 Sum_probs=180.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC---CcEEEEeCCCCCCChhHHHHHH-------Hhh-----cCCceEEEEcccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG---DGVVGLDNFNNYYDPSLKKARK-------ALL-----NNHGVFVIEGDIN 152 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~-------~~~-----~~~~v~~~~~Dl~ 152 (421)
.++|+|+|||||||+|+-+++.|++.- -+++++.|.+..-+...+-... ... .-.++..+.+|++
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 689999999999999999999999874 3788888866544332211111 001 1257888999998
Q ss_pred CH------HHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC---C
Q 043169 153 DA------KLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG---L 223 (421)
Q Consensus 153 d~------~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g---~ 223 (421)
++ +.++...+++ |+|||+||-... .+..+....+|+.||.++++.|++....+-+|++|++.+.- .
T Consensus 90 ~~~LGis~~D~~~l~~eV--~ivih~AAtvrF---de~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~ 164 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEV--NIVIHSAATVRF---DEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGH 164 (467)
T ss_pred CcccCCChHHHHHHHhcC--CEEEEeeeeecc---chhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccc
Confidence 54 4555566655 999999997543 24456788999999999999999887666999999987641 1
Q ss_pred CCCCCCCCCC-----------------------C--CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 224 NENVPFSEAD-----------------------R--TDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 224 ~~~~~~~e~~-----------------------~--~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
..+.++.+.. + .....+.|.-+|+.+|..+.+.++ +++++|+||+.|......
T Consensus 165 i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~st~~E 242 (467)
T KOG1221|consen 165 IEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIITSTYKE 242 (467)
T ss_pred ccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCceeccccC
Confidence 1111111110 0 011246799999999999988765 799999999999886543
Q ss_pred CCC-------hHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC--CCC-CCceEEEecCCC--ccC
Q 043169 279 PDM-------AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS--AGP-APYRIFNLGNTS--PVT 346 (421)
Q Consensus 279 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~--~~~-~~~~~~~i~~~~--~~t 346 (421)
+-. ....++-.+-+|.--.+. .+.+...+++.+|.|+.+++.+...- ... ....+||+++++ +++
T Consensus 243 P~pGWidn~~gp~g~i~g~gkGvlr~~~---~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t 319 (467)
T KOG1221|consen 243 PFPGWIDNLNGPDGVIIGYGKGVLRCFL---VDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVT 319 (467)
T ss_pred CCCCccccCCCCceEEEEeccceEEEEE---EccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCccc
Confidence 211 111122222233322333 46788999999999999998765321 111 235699999965 699
Q ss_pred HHHHHHHHHHHhC
Q 043169 347 VPKLVNILERHLK 359 (421)
Q Consensus 347 ~~el~~~l~~~~g 359 (421)
+.++.+.......
T Consensus 320 ~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 320 WGDFIELALRYFE 332 (467)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988875
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=142.15 Aligned_cols=168 Identities=20% Similarity=0.170 Sum_probs=126.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
++++||||+|+||.+++++|+++|+ .|+++.|+....+..............++.++.+|+++.+++.++++..
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999996 6888888665433222111111122356788999999999988887664
Q ss_pred CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccc-cCCCCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV-YGLNENVPFSEADRTDQPA 239 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v-~g~~~~~~~~e~~~~~~~~ 239 (421)
++|.|||+||..... ...++++..+++|+.++.++++++++.+.. ++|++||... ++ ....
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~ii~~ss~~~~~~-------------~~~~ 146 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLD-FFVLFSSVAGVLG-------------NPGQ 146 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcc-eEEEEccHHHhcC-------------CCCc
Confidence 479999999975431 123445678999999999999999877654 8999998654 32 1345
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEecccc
Q 043169 240 SLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVY 273 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~ 273 (421)
..|+.+|.+.+.+++.+.+ .|++++.+.||.+-
T Consensus 147 ~~y~~sk~~~~~~~~~~~~-~~~~~~~~~~g~~~ 179 (180)
T smart00822 147 ANYAAANAFLDALAAHRRA-RGLPATSINWGAWA 179 (180)
T ss_pred hhhHHHHHHHHHHHHHHHh-cCCceEEEeecccc
Confidence 7799999999999976654 68999999998764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-18 Score=145.67 Aligned_cols=154 Identities=21% Similarity=0.201 Sum_probs=118.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
|+|+||||+|+||.+++++|+++|. .|+++.|+. ..+........ .....++.++++|+++.++++++++.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~--~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSE--DSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSC--HHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999965 677777750 00111111111 123478999999999999999988775
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPA 239 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~ 239 (421)
++|+||||||..... ...++.+..+++|+.+...+.+++...+ .++||++||.... .+.+..
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~g~iv~~sS~~~~------------~~~~~~ 145 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQG-GGKIVNISSIAGV------------RGSPGM 145 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHT-TEEEEEEEEGGGT------------SSSTTB
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehheecc-ccceEEecchhhc------------cCCCCC
Confidence 689999999997632 1234456889999999999999988744 4599999998764 123456
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 043169 240 SLYAATKKAGEEIAHTYNHI 259 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~ 259 (421)
..|+.+|.+.+.+++.++++
T Consensus 146 ~~Y~askaal~~~~~~la~e 165 (167)
T PF00106_consen 146 SAYSASKAALRGLTQSLAAE 165 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999886
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-17 Score=149.56 Aligned_cols=173 Identities=22% Similarity=0.208 Sum_probs=130.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC-ChhHHHHHHHhhcC-CceEEEEcccCC-HHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY-DPSLKKARKALLNN-HGVFVIEGDIND-AKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~-~~v~~~~~Dl~d-~~~~~~~~~~~ 164 (421)
+++|+|+||||+++||.++++.|+++|++|+++.++.... ......... ... ..+.+..+|+++ .++++.+++..
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~~~ 80 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVAAA 80 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999998866542 111111111 111 367888899998 99888877665
Q ss_pred -----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|++|||||.... ....++.+..+++|+.|...+.+++.....+++||++||.... .
T Consensus 81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~----------- 148 (251)
T COG1028 81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-G----------- 148 (251)
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-C-----------
Confidence 48999999998642 2233556789999999988888855433222399999998753 1
Q ss_pred CCCC-CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 043169 235 TDQP-ASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGP 275 (421)
Q Consensus 235 ~~~~-~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~ 275 (421)
..+ ...|+.||.+.+.+++.++.+ +||+++.|.||.+-.+
T Consensus 149 -~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~ 192 (251)
T COG1028 149 -GPPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP 192 (251)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence 122 478999999999999999865 5899999999966544
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=135.78 Aligned_cols=209 Identities=18% Similarity=0.107 Sum_probs=145.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEe-CCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLD-NFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
.|.|+||||+.|||-.|+++|++. |-+|++.. |+.+.. .++........++++++++|+++.+++.++++++
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a---~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~i 79 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA---ATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKI 79 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh---hHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhh
Confidence 456999999999999999999987 66666654 434432 2233333345789999999999999999888775
Q ss_pred ----CCcEEEEcccccCchhhccC-----CchhhhhhHHHHHHHHHHH----HhcCC----------CCeEEEEcccccc
Q 043169 165 ----AFTHVMHLAAQAGVRYAMQN-----PHSYVHSNIAGLVTLLEAC----KSANP----------QPSIVWASSSSVY 221 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~~~~~~-----~~~~~~~N~~g~~~l~~~~----~~~~~----------~~riV~~SS~~v~ 221 (421)
.++++|||||+...-.+... ....+++|..|+..+.+.+ ++... ...||++||.+.-
T Consensus 80 Vg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s 159 (249)
T KOG1611|consen 80 VGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS 159 (249)
T ss_pred cccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc
Confidence 58999999999754322222 3367999999966666554 33321 1178989986531
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEE
Q 043169 222 GLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITV 298 (421)
Q Consensus 222 g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 298 (421)
.. .....+..+|..||.+...+++++.-+ .++-++.++||+|-..-.. .
T Consensus 160 --~~-------~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg---------------~---- 211 (249)
T KOG1611|consen 160 --IG-------GFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGG---------------K---- 211 (249)
T ss_pred --cC-------CCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCC---------------C----
Confidence 10 112356789999999999999998865 4799999999999764111 0
Q ss_pred EecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEe
Q 043169 299 YRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNL 339 (421)
Q Consensus 299 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i 339 (421)
-.-+.+++-+..++..+.+-....+|.-||-
T Consensus 212 ----------~a~ltveeSts~l~~~i~kL~~~hnG~ffn~ 242 (249)
T KOG1611|consen 212 ----------KAALTVEESTSKLLASINKLKNEHNGGFFNR 242 (249)
T ss_pred ----------CcccchhhhHHHHHHHHHhcCcccCcceEcc
Confidence 0134567777777777766544455665554
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=146.22 Aligned_cols=207 Identities=15% Similarity=0.047 Sum_probs=142.9
Q ss_pred HHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--CCcEEEEcccccCchhhcc
Q 043169 106 VSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--AFTHVMHLAAQAGVRYAMQ 183 (421)
Q Consensus 106 l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d~vi~~Ag~~~~~~~~~ 183 (421)
++++|+++|++|++++|+.+..+ ...++++|++|.++++++++.. ++|+||||||... ..
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~--------------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~ 62 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT--------------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TA 62 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh--------------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CC
Confidence 47899999999999999654210 1346789999999999999875 6899999999753 24
Q ss_pred CCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCC---------------CCCCCCCChHHHHHH
Q 043169 184 NPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEA---------------DRTDQPASLYAATKK 247 (421)
Q Consensus 184 ~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~---------------~~~~~~~~~Y~~sK~ 247 (421)
+++..+++|+.++..+++++.+.- ..++||++||...|+.....+..+. ..+..+...|+.||.
T Consensus 63 ~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 142 (241)
T PRK12428 63 PVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKE 142 (241)
T ss_pred CHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHH
Confidence 577899999999999999986541 1249999999988753221111110 012345688999999
Q ss_pred HHHHHHHHHH-HH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHH
Q 043169 248 AGEEIAHTYN-HI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLG 323 (421)
Q Consensus 248 ~~e~~~~~~~-~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 323 (421)
+.+.+++.++ .+ +|+++++|+||.+.++-.... ....-........ . ...-+..++|+|++++.
T Consensus 143 a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~--~--------~~~~~~~pe~va~~~~~ 210 (241)
T PRK12428 143 ALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDF--RSMLGQERVDSDA--K--------RMGRPATADEQAAVLVF 210 (241)
T ss_pred HHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccc--hhhhhhHhhhhcc--c--------ccCCCCCHHHHHHHHHH
Confidence 9999999888 44 589999999999998732210 0000000000000 0 01125678999999999
Q ss_pred hhhcCCCCCCceEEEecCC
Q 043169 324 SLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 324 ~l~~~~~~~~~~~~~i~~~ 342 (421)
++........|....+.++
T Consensus 211 l~s~~~~~~~G~~i~vdgg 229 (241)
T PRK12428 211 LCSDAARWINGVNLPVDGG 229 (241)
T ss_pred HcChhhcCccCcEEEecCc
Confidence 8875544566777777654
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-14 Score=135.52 Aligned_cols=224 Identities=25% Similarity=0.238 Sum_probs=166.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+|+||||||++|++++++|+++|++|+++.|+.+. ..... .++.+...|+.++.++...+++. |.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~---------~~~~~-~~v~~~~~d~~~~~~l~~a~~G~--~~~~ 68 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEA---------AAALA-GGVEVVLGDLRDPKSLVAGAKGV--DGVL 68 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHH---------HHhhc-CCcEEEEeccCCHhHHHHHhccc--cEEE
Confidence 579999999999999999999999999999995431 12222 78999999999999999999998 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
++.+... . +. ...........+..+.+. .+.. +++.+|....- ......|..+|...|
T Consensus 69 ~i~~~~~-~----~~-~~~~~~~~~~~~~a~~a~-~~~~-~~~~~s~~~~~--------------~~~~~~~~~~~~~~e 126 (275)
T COG0702 69 LISGLLD-G----SD-AFRAVQVTAVVRAAEAAG-AGVK-HGVSLSVLGAD--------------AASPSALARAKAAVE 126 (275)
T ss_pred EEecccc-c----cc-chhHHHHHHHHHHHHHhc-CCce-EEEEeccCCCC--------------CCCccHHHHHHHHHH
Confidence 8887542 1 11 233344444444555444 2333 88888887641 134578999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCC
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
..+.+ .|+..+++|+..+|...... ........+.+.... +....+++..+|++.++...+..+
T Consensus 127 ~~l~~----sg~~~t~lr~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~i~~~d~a~~~~~~l~~~-- 190 (275)
T COG0702 127 AALRS----SGIPYTTLRRAAFYLGAGAA-----FIEAAEAAGLPVIPR-----GIGRLSPIAVDDVAEALAAALDAP-- 190 (275)
T ss_pred HHHHh----cCCCeEEEecCeeeeccchh-----HHHHHHhhCCceecC-----CCCceeeeEHHHHHHHHHHHhcCC--
Confidence 98887 58999999977766543321 122223333333322 233789999999999999999887
Q ss_pred CCCceEEEecCCCccCHHHHHHHHHHHhCCcccc
Q 043169 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKK 364 (421)
Q Consensus 331 ~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~ 364 (421)
...+++|.+++++..+..++++.+....|++...
T Consensus 191 ~~~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~ 224 (275)
T COG0702 191 ATAGRTYELAGPEALTLAELASGLDYTIGRPVGL 224 (275)
T ss_pred cccCcEEEccCCceecHHHHHHHHHHHhCCccee
Confidence 3678999999998999999999999999987654
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=131.09 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=160.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
.+|-..+||||.+++|...++.|+++|+.|.+++..+++.+...++ ...++.|...|++++++++.++...
T Consensus 7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vake------lg~~~vf~padvtsekdv~aala~ak~k 80 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKE------LGGKVVFTPADVTSEKDVRAALAKAKAK 80 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHH------hCCceEEeccccCcHHHHHHHHHHHHhh
Confidence 5788899999999999999999999999999999877665544332 2367899999999999999998765
Q ss_pred --CCcEEEEcccccCc----------hhhccCCchhhhhhHHHHHHHHHHHHh---------cCCCCeEEEEccccccCC
Q 043169 165 --AFTHVMHLAAQAGV----------RYAMQNPHSYVHSNIAGLVTLLEACKS---------ANPQPSIVWASSSSVYGL 223 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~----------~~~~~~~~~~~~~N~~g~~~l~~~~~~---------~~~~~riV~~SS~~v~g~ 223 (421)
+.|..+||||+... ....++.+..+++|+.||.|+++.... .|-.+-||++.|.+.|..
T Consensus 81 fgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdg 160 (260)
T KOG1199|consen 81 FGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDG 160 (260)
T ss_pred ccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecC
Confidence 79999999998532 123456778899999999999987521 122236888888887742
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEe
Q 043169 224 NENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300 (421)
Q Consensus 224 ~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (421)
. -....|+.||.+...+..-+++. .||+++.|.||..-.|--. .++.-.+.++... ++.+.
T Consensus 161 q------------~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tplls---slpekv~~fla~~-ipfps 224 (260)
T KOG1199|consen 161 Q------------TGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLS---SLPEKVKSFLAQL-IPFPS 224 (260)
T ss_pred c------------cchhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhh---hhhHHHHHHHHHh-CCCch
Confidence 2 34578999999887766666555 3899999999987666221 1233333343322 22211
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecC
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN 341 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~ 341 (421)
-+-|..+.+..+-.+++++ ..+|++.-+.+
T Consensus 225 ---------rlg~p~eyahlvqaiienp--~lngevir~dg 254 (260)
T KOG1199|consen 225 ---------RLGHPHEYAHLVQAIIENP--YLNGEVIRFDG 254 (260)
T ss_pred ---------hcCChHHHHHHHHHHHhCc--ccCCeEEEecc
Confidence 1456788888888888888 56677766643
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-16 Score=140.04 Aligned_cols=172 Identities=17% Similarity=0.155 Sum_probs=136.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH----HHHHHhhccC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK----LLAKLFDAVA 165 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~----~~~~~~~~~~ 165 (421)
|+=+.|||||.+||++.+++|+++|.+|+++.|+.++.+...+++..+.. ..++++..|.++.+ .+.+.+.+..
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~--vev~~i~~Dft~~~~~ye~i~~~l~~~~ 126 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK--VEVRIIAIDFTKGDEVYEKLLEKLAGLD 126 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC--cEEEEEEEecCCCchhHHHHHHHhcCCc
Confidence 45689999999999999999999999999999999888777766655543 67889999998654 4677777778
Q ss_pred CcEEEEcccccC--chhhcc----CCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAG--VRYAMQ----NPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 166 ~d~vi~~Ag~~~--~~~~~~----~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
+.++|||+|++. +....+ .....+.+|+.++..+.+...... .++-||++||.+.. .+.
T Consensus 127 VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~------------~p~ 194 (312)
T KOG1014|consen 127 VGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL------------IPT 194 (312)
T ss_pred eEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc------------ccC
Confidence 889999999976 222111 234678999999888877764332 23489999997643 233
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGP 275 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~ 275 (421)
+..+.|+.||...+.+..++.+|+ ||.+..+-|..|-++
T Consensus 195 p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTk 236 (312)
T KOG1014|consen 195 PLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATK 236 (312)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecc
Confidence 567899999999999999998884 899999999999876
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=115.13 Aligned_cols=208 Identities=17% Similarity=0.171 Sum_probs=145.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+|.|.||||-+|++|++++.+|||+|++++|+.++.. ..+++..++.|+.|++++.+.+.++ |+||
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~-----------~~~~~~i~q~Difd~~~~a~~l~g~--DaVI 67 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLA-----------ARQGVTILQKDIFDLTSLASDLAGH--DAVI 67 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcc-----------ccccceeecccccChhhhHhhhcCC--ceEE
Confidence 68999999999999999999999999999999654321 1167889999999999999999988 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC-CCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG-LNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g-~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
..-|...+ +... ........|++.++.+++. |++.+..++... .....-. +.+..|...|..++..+
T Consensus 68 sA~~~~~~-----~~~~---~~~k~~~~li~~l~~agv~-RllVVGGAGSL~id~g~rLv---D~p~fP~ey~~~A~~~a 135 (211)
T COG2910 68 SAFGAGAS-----DNDE---LHSKSIEALIEALKGAGVP-RLLVVGGAGSLEIDEGTRLV---DTPDFPAEYKPEALAQA 135 (211)
T ss_pred EeccCCCC-----ChhH---HHHHHHHHHHHHHhhcCCe-eEEEEcCccceEEcCCceee---cCCCCchhHHHHHHHHH
Confidence 98765421 1111 1122266788888988865 999888765432 2221111 12323445566666655
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
| ++..++.+..++|+.+-|...+-|+.+... +..|+...... ..--++|+..|.|.|++..++.+
T Consensus 136 e-~L~~Lr~~~~l~WTfvSPaa~f~PGerTg~--------yrlggD~ll~n-----~~G~SrIS~aDYAiA~lDe~E~~- 200 (211)
T COG2910 136 E-FLDSLRAEKSLDWTFVSPAAFFEPGERTGN--------YRLGGDQLLVN-----AKGESRISYADYAIAVLDELEKP- 200 (211)
T ss_pred H-HHHHHhhccCcceEEeCcHHhcCCccccCc--------eEeccceEEEc-----CCCceeeeHHHHHHHHHHHHhcc-
Confidence 5 566777776799999999999999766543 23333333332 12236889999999999999988
Q ss_pred CCCCceEEEe
Q 043169 330 GPAPYRIFNL 339 (421)
Q Consensus 330 ~~~~~~~~~i 339 (421)
....+.|-+
T Consensus 201 -~h~rqRftv 209 (211)
T COG2910 201 -QHIRQRFTV 209 (211)
T ss_pred -cccceeeee
Confidence 344555544
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=165.97 Aligned_cols=173 Identities=18% Similarity=0.152 Sum_probs=133.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCC---------C-hh---------------------------
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYY---------D-PS--------------------------- 130 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~---------~-~~--------------------------- 130 (421)
+++++|||||+++||.+++++|+++ |++|++++|+.... + ..
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 5899999999999999999999998 69999999972100 0 00
Q ss_pred ---HHHHH--HH--hhcCCceEEEEcccCCHHHHHHHhhcc----CCcEEEEcccccCc----hhhccCCchhhhhhHHH
Q 043169 131 ---LKKAR--KA--LLNNHGVFVIEGDINDAKLLAKLFDAV----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAG 195 (421)
Q Consensus 131 ---~~~~~--~~--~~~~~~v~~~~~Dl~d~~~~~~~~~~~----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g 195 (421)
..+.. .. ......+.++.+|++|.++++++++.+ ++|.||||||+... ..+.+++...+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 00000 00 112346889999999999999888765 58999999998643 23445667899999999
Q ss_pred HHHHHHHHHhcCCCCeEEEEccccc-cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEEecccc
Q 043169 196 LVTLLEACKSANPQPSIVWASSSSV-YGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRFFTVY 273 (421)
Q Consensus 196 ~~~l~~~~~~~~~~~riV~~SS~~v-~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~~vrp~~v~ 273 (421)
+.++++++.....+ +||++||... +| ......|+.+|.+...+++.++.++ ++++++|.||.+-
T Consensus 2156 ~~~Ll~al~~~~~~-~IV~~SSvag~~G-------------~~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wd 2221 (2582)
T TIGR02813 2156 LLSLLAALNAENIK-LLALFSSAAGFYG-------------NTGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWD 2221 (2582)
T ss_pred HHHHHHHHHHhCCC-eEEEEechhhcCC-------------CCCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeec
Confidence 99999999876644 8999999764 33 2345789999999999999988875 6999999999887
Q ss_pred CC
Q 043169 274 GP 275 (421)
Q Consensus 274 G~ 275 (421)
|+
T Consensus 2222 tg 2223 (2582)
T TIGR02813 2222 GG 2223 (2582)
T ss_pred CC
Confidence 65
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-14 Score=123.19 Aligned_cols=166 Identities=20% Similarity=0.209 Sum_probs=117.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
+++||||.|+||..+++.|+++|. +|+++.|+.............-......+.++++|++|++++.++++.+ +
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 689999999999999999999985 7999999732222222222222233568999999999999999999876 5
Q ss_pred CcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc-ccCCCCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS-VYGLNENVPFSEADRTDQPAS 240 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~-v~g~~~~~~~~e~~~~~~~~~ 240 (421)
++.|||+||..... .+.++....+..-+.|+.+|.+++...... .+|..||.. ++| .....
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~-~~i~~SSis~~~G-------------~~gq~ 147 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLD-FFILFSSISSLLG-------------GPGQS 147 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTS-EEEEEEEHHHHTT--------------TTBH
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCC-eEEEECChhHhcc-------------CcchH
Confidence 78899999986431 223344567888899999999999887765 899999965 454 24568
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccc
Q 043169 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v 272 (421)
.|+.+-...+.+++..++ .|.++.+|.-|..
T Consensus 148 ~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~W 178 (181)
T PF08659_consen 148 AYAAANAFLDALARQRRS-RGLPAVSINWGAW 178 (181)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTSEEEEEEE-EB
T ss_pred hHHHHHHHHHHHHHHHHh-CCCCEEEEEcccc
Confidence 899999999998887655 5899999886643
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.3e-14 Score=119.56 Aligned_cols=273 Identities=16% Similarity=0.116 Sum_probs=176.7
Q ss_pred CCCEEEEEcCCChhHHHHHH-----HHHHCC----CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH-HHH
Q 043169 89 GGMSVLVTGAAGFVGTHVSL-----ALKKRG----DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK-LLA 158 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~-----~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-~~~ 158 (421)
++++.++-+++|+|+..|.. ++-+.+ |.|.++.|...+ .++.+.+.|..-.- ++.
T Consensus 11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~---------------~ritw~el~~~Gip~sc~ 75 (315)
T KOG3019|consen 11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGK---------------ARITWPELDFPGIPISCV 75 (315)
T ss_pred ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCC---------------cccccchhcCCCCceehH
Confidence 45667889999999988876 444444 889999995532 23333333322100 111
Q ss_pred HHhhccCCcEEEEcccccCchhhccCCchhhhhhHHH-----HHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCC
Q 043169 159 KLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAG-----LVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 159 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g-----~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
+. . ..+.+|+... .+.+...++-|+.| |..|.++..++.- .+..|.+|..++|-......++|+
T Consensus 76 a~---v--na~g~n~l~P-----~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~ 145 (315)
T KOG3019|consen 76 AG---V--NAVGNNALLP-----IRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEK 145 (315)
T ss_pred HH---H--hhhhhhccCc-----hhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccc
Confidence 11 1 2333444321 12344455555555 7888888876643 347999999999988777788887
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHH--HHHcCCCeEEEecCCCCcceee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTR--NILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.. ...+..+.--+..|..++...+ .++++++|.|.|.|.+... +..++- ++-.|+++ |+|++.++
T Consensus 146 ~~~-qgfd~~srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gGGa---~~~M~lpF~~g~GGPl------GsG~Q~fp 213 (315)
T KOG3019|consen 146 IVH-QGFDILSRLCLEWEGAALKANK--DVRVALIRIGVVLGKGGGA---LAMMILPFQMGAGGPL------GSGQQWFP 213 (315)
T ss_pred ccc-CChHHHHHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCCcc---hhhhhhhhhhccCCcC------CCCCeeee
Confidence 765 4444444444445555544333 4999999999999986552 222221 22334443 78999999
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCC------C-CC-----Ccc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN------G-DV-----PFT 378 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~------~-~~-----~~~ 378 (421)
|||++|++..+..+|+++ .-.++.|-..+++++..|+++.+.+.++++. ++|.|.. + +. .--
T Consensus 214 WIHv~DL~~li~~ale~~---~v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~---~~pvP~fvvqA~fG~erA~~vLeGq 287 (315)
T KOG3019|consen 214 WIHVDDLVNLIYEALENP---SVKGVINGVAPNPVRNGEFCQQLGSALSRPS---WLPVPDFVVQALFGPERATVVLEGQ 287 (315)
T ss_pred eeehHHHHHHHHHHHhcC---CCCceecccCCCccchHHHHHHHHHHhCCCc---ccCCcHHHHHHHhCccceeEEeeCC
Confidence 999999999999999986 3357888888999999999999999999875 4444411 0 00 011
Q ss_pred cCChHHHHHHcCCCcCC-CHHHHHHHHH
Q 043169 379 HANISSAQKEFGYRPTT-DLQTGLKKFV 405 (421)
Q Consensus 379 ~~d~~ka~~~lG~~p~~-~l~e~l~~~~ 405 (421)
..-..|+ .++||+.+| .+.+++++.+
T Consensus 288 KV~Pqra-l~~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 288 KVLPQRA-LELGFEFKYPYVKDALRAIM 314 (315)
T ss_pred cccchhH-hhcCceeechHHHHHHHHHh
Confidence 1334555 459999887 5777777664
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-13 Score=116.68 Aligned_cols=182 Identities=13% Similarity=0.100 Sum_probs=130.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-----cEEEEeCCCCCCChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHHhhc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD-----GVVGLDNFNNYYDPSLKKARKALL-NNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
.|.+||||++++||-+|+.+|++... .+++.||+.++.++.-.....-.. ...++.++.+|+++..++.++.++
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~d 82 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKD 82 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHH
Confidence 37899999999999999999998753 578889988877666555443332 246799999999999999888877
Q ss_pred c-----CCcEEEEcccccCch-------------------------------hhccCCchhhhhhHHHHHHHHHHHHh--
Q 043169 164 V-----AFTHVMHLAAQAGVR-------------------------------YAMQNPHSYVHSNIAGLVTLLEACKS-- 205 (421)
Q Consensus 164 ~-----~~d~vi~~Ag~~~~~-------------------------------~~~~~~~~~~~~N~~g~~~l~~~~~~-- 205 (421)
+ ++|.|+-|||++..+ .+.++....++.||.|...++..+..
T Consensus 83 i~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll 162 (341)
T KOG1478|consen 83 IKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLL 162 (341)
T ss_pred HHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHh
Confidence 6 689999999986320 12233445799999998777765532
Q ss_pred -cCCCCeEEEEccccccCCCCCCCCCCCCC-CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 043169 206 -ANPQPSIVWASSSSVYGLNENVPFSEADR-TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGP 275 (421)
Q Consensus 206 -~~~~~riV~~SS~~v~g~~~~~~~~e~~~-~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~ 275 (421)
++..+.+|++||...- +..++-+|. ......+|..||.+...+--...+. .|+.-.++.||.....
T Consensus 163 ~~~~~~~lvwtSS~~a~----kk~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~ 233 (341)
T KOG1478|consen 163 CHSDNPQLVWTSSRMAR----KKNLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTN 233 (341)
T ss_pred hcCCCCeEEEEeecccc----cccCCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeecc
Confidence 1222389999997642 122222221 2245678999999998777666654 3688889999876543
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.5e-12 Score=120.08 Aligned_cols=215 Identities=22% Similarity=0.188 Sum_probs=131.6
Q ss_pred cccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH-HHHHHhh
Q 043169 84 QIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK-LLAKLFD 162 (421)
Q Consensus 84 ~~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-~~~~~~~ 162 (421)
...+.+.++|+|+||+|.+|+-+++.|.++|+.|.++.|+......... ..........+..|..... ......+
T Consensus 73 ~~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~----~~~~d~~~~~v~~~~~~~~d~~~~~~~ 148 (411)
T KOG1203|consen 73 NNNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG----VFFVDLGLQNVEADVVTAIDILKKLVE 148 (411)
T ss_pred CCCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc----ccccccccceeeeccccccchhhhhhh
Confidence 3344678899999999999999999999999999999996543322211 1112344555555555433 3333443
Q ss_pred ccC--CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCC
Q 043169 163 AVA--FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240 (421)
Q Consensus 163 ~~~--~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~ 240 (421)
.+. ..+++-++|-.... +|...-..+...|++|++++|+..|++ |+|++||+..-..... ........
T Consensus 149 ~~~~~~~~v~~~~ggrp~~---ed~~~p~~VD~~g~knlvdA~~~aGvk-~~vlv~si~~~~~~~~------~~~~~~~~ 218 (411)
T KOG1203|consen 149 AVPKGVVIVIKGAGGRPEE---EDIVTPEKVDYEGTKNLVDACKKAGVK-RVVLVGSIGGTKFNQP------PNILLLNG 218 (411)
T ss_pred hccccceeEEecccCCCCc---ccCCCcceecHHHHHHHHHHHHHhCCc-eEEEEEeecCcccCCC------chhhhhhh
Confidence 332 24555555543211 133455678899999999999999987 9999998765311110 00000023
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHH
Q 043169 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 320 (421)
.+..+|+.+|.+.++ .|++.++||||...-........ ...... ..+ ..+..--.+.-.|+|+.
T Consensus 219 ~~~~~k~~~e~~~~~----Sgl~ytiIR~g~~~~~~~~~~~~-------~~~~~~-~~~----~~~~~~~~i~r~~vael 282 (411)
T KOG1203|consen 219 LVLKAKLKAEKFLQD----SGLPYTIIRPGGLEQDTGGQREV-------VVDDEK-ELL----TVDGGAYSISRLDVAEL 282 (411)
T ss_pred hhhHHHHhHHHHHHh----cCCCcEEEeccccccCCCCccee-------cccCcc-ccc----cccccceeeehhhHHHH
Confidence 445777777777664 79999999999876542221100 001111 011 01111135667899999
Q ss_pred HHHhhhcC
Q 043169 321 CLGSLDTS 328 (421)
Q Consensus 321 ~~~~l~~~ 328 (421)
++.++...
T Consensus 283 ~~~all~~ 290 (411)
T KOG1203|consen 283 VAKALLNE 290 (411)
T ss_pred HHHHHhhh
Confidence 99998877
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.2e-13 Score=114.03 Aligned_cols=207 Identities=16% Similarity=0.144 Sum_probs=131.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEE--EEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVV--GLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~--~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.++.+||||+|-+||..++..+.+++.+.. +..|.....+. .+. ..........+|++....+.++++..
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~~~~----L~v--~~gd~~v~~~g~~~e~~~l~al~e~~r~ 78 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAELEG----LKV--AYGDDFVHVVGDITEEQLLGALREAPRK 78 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcccccccc----eEE--EecCCcceechHHHHHHHHHHHHhhhhh
Confidence 457789999999999999999988886543 33332211000 000 00012223445555555444444332
Q ss_pred ---CCcEEEEcccccCchh-------hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY-------AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~-------~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
+.|+||||||..++.. ..+.++.+++.|+.....|.+.+ ++..+.+-+|++||.+..
T Consensus 79 k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav--------- 149 (253)
T KOG1204|consen 79 KGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV--------- 149 (253)
T ss_pred cCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh---------
Confidence 5799999999876521 12335689999999977776655 344345689999997653
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH--hCCcEEEEEeccccCCCC---CCCC-hH---HHHHHHHHcCCCeEEEec
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI--YGLSITGLRFFTVYGPWG---RPDM-AY---FSFTRNILQGKPITVYRG 301 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~gi~~~~vrp~~v~G~~~---~~~~-~~---~~~~~~~~~~~~~~~~~~ 301 (421)
.|...+..|+.+|++-+.+++.++.+ .++++..++||.|-.+-+ +.+. .. -.+++.+.+..
T Consensus 150 ---~p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~~~------- 219 (253)
T KOG1204|consen 150 ---RPFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKESG------- 219 (253)
T ss_pred ---ccccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHhcC-------
Confidence 24467789999999999999999866 389999999999876521 1111 11 12333333322
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
..+...+.|+.+..+++..
T Consensus 220 --------~ll~~~~~a~~l~~L~e~~ 238 (253)
T KOG1204|consen 220 --------QLLDPQVTAKVLAKLLEKG 238 (253)
T ss_pred --------CcCChhhHHHHHHHHHHhc
Confidence 2455678888888877755
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=106.14 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+++||.++++.|+++|++|++++|+.+..+....... .....+.++.+|+++.++++++++.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEIT---NLGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999986542222111111 11345678899999999988877542
Q ss_pred --CCcEEEEcccccCchh--hccCCchhhhhhHHHHHHHHHHH----HhcC------CCCeEEEEccccc
Q 043169 165 --AFTHVMHLAAQAGVRY--AMQNPHSYVHSNIAGLVTLLEAC----KSAN------PQPSIVWASSSSV 220 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~--~~~~~~~~~~~N~~g~~~l~~~~----~~~~------~~~riV~~SS~~v 220 (421)
++|++|||||...... ........-.+|+.++....+.+ ++.+ ..+||-.+||.+.
T Consensus 91 ~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 91 FSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred cCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 6899999999864321 11111112244455433333333 2222 1248888888654
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-10 Score=100.14 Aligned_cols=230 Identities=12% Similarity=0.076 Sum_probs=148.1
Q ss_pred CCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.++||++||+|-. -.|+..|++.|.++|+++......+ +.+...++... ....-.+++||+++.+++.++|+.+
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~---~~~s~~v~~cDV~~d~~i~~~f~~i 78 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAE---ELGSDLVLPCDVTNDESIDALFATI 78 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHh---hccCCeEEecCCCCHHHHHHHHHHH
Confidence 3789999999954 5799999999999999998877633 22222222111 1123567999999999999999876
Q ss_pred -----CCcEEEEcccccCchhhccC--------CchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVRYAMQN--------PHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~~~~~~--------~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|.|||+-|.+.-..-..+ +...+++-......|.++++.-.. ...+|.+|-.+.
T Consensus 79 ~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs---------- 148 (259)
T COG0623 79 KKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGS---------- 148 (259)
T ss_pred HHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccc----------
Confidence 69999999998753222122 222333333444445555543211 126776664321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
...-+.++.-+.+|++.|.-++-++.+. ||||+.|--|.|-.--...-..+..+++.....-|+
T Consensus 149 --~r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl----------- 215 (259)
T COG0623 149 --ERVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPL----------- 215 (259)
T ss_pred --eeecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCc-----------
Confidence 0122456789999999999998888764 799999988776432111111233444443333332
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+--+.++||+...+.++..-.....|++.++.+|-.
T Consensus 216 -~r~vt~eeVG~tA~fLlSdLssgiTGei~yVD~G~~ 251 (259)
T COG0623 216 -RRNVTIEEVGNTAAFLLSDLSSGITGEIIYVDSGYH 251 (259)
T ss_pred -cCCCCHHHhhhhHHHHhcchhcccccceEEEcCCce
Confidence 223457899988888888766668899999987754
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=96.31 Aligned_cols=157 Identities=18% Similarity=0.119 Sum_probs=121.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
+++|.++|.||||-.|+.+.+++++.+ -+|+++.|++. .++ .....+.....|....++....+.+
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~-~d~---------at~k~v~q~~vDf~Kl~~~a~~~qg-- 83 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRREL-PDP---------ATDKVVAQVEVDFSKLSQLATNEQG-- 83 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccC-CCc---------cccceeeeEEechHHHHHHHhhhcC--
Confidence 688999999999999999999999998 48999998542 111 1234566777787776666666655
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+|+.+++-|-... ....+...++.+.-...+.+++++.|++ +|+.+||.+.- + ...-.|-..
T Consensus 84 ~dV~FcaLgTTRg---kaGadgfykvDhDyvl~~A~~AKe~Gck-~fvLvSS~GAd-------------~-sSrFlY~k~ 145 (238)
T KOG4039|consen 84 PDVLFCALGTTRG---KAGADGFYKVDHDYVLQLAQAAKEKGCK-TFVLVSSAGAD-------------P-SSRFLYMKM 145 (238)
T ss_pred CceEEEeeccccc---ccccCceEeechHHHHHHHHHHHhCCCe-EEEEEeccCCC-------------c-ccceeeeec
Confidence 4999999886432 2445677788888888899999999976 99999998751 1 345679999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWG 277 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~ 277 (421)
|-..|.-+.++.-+ +++|+|||.+.|.+.
T Consensus 146 KGEvE~~v~eL~F~---~~~i~RPG~ll~~R~ 174 (238)
T KOG4039|consen 146 KGEVERDVIELDFK---HIIILRPGPLLGERT 174 (238)
T ss_pred cchhhhhhhhcccc---EEEEecCcceecccc
Confidence 99999988887543 689999999999754
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=103.31 Aligned_cols=177 Identities=16% Similarity=0.034 Sum_probs=109.7
Q ss_pred CCCCEEEEEcCCChhHHH--HHHHHHHCCCcEEEEeCCCCCCChh--------HHHHH-HHhhcCCceEEEEcccCCHHH
Q 043169 88 SGGMSVLVTGAAGFVGTH--VSLALKKRGDGVVGLDNFNNYYDPS--------LKKAR-KALLNNHGVFVIEGDINDAKL 156 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~~~--------~~~~~-~~~~~~~~v~~~~~Dl~d~~~ 156 (421)
..+|++||||+++++|.+ +++.| +.|++|+++++..+..+.. ..... ........+..+.+|+++.++
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 457999999999999999 89999 9999999988643221110 00011 111112346788999999999
Q ss_pred HHHHhhcc-----CCcEEEEcccccCchh----------------hccC----------------C----chhhhhhHHH
Q 043169 157 LAKLFDAV-----AFTHVMHLAAQAGVRY----------------AMQN----------------P----HSYVHSNIAG 195 (421)
Q Consensus 157 ~~~~~~~~-----~~d~vi~~Ag~~~~~~----------------~~~~----------------~----~~~~~~N~~g 195 (421)
+.++++.+ ++|+||||+|...-.. .... + +....+.++|
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vMg 197 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVMG 197 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhhc
Confidence 98888765 6899999999752100 0000 0 0012334455
Q ss_pred HHHHH---HHHHhcCC---CCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEE
Q 043169 196 LVTLL---EACKSANP---QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITG 266 (421)
Q Consensus 196 ~~~l~---~~~~~~~~---~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~ 266 (421)
..... ++....++ ..++|-.|..+. .. ..+......-+.+|...|..++.++.+. |+++++
T Consensus 198 gedw~~Wi~al~~a~lla~g~~~va~TY~G~---~~-------t~p~Y~~g~mG~AKa~LE~~~r~La~~L~~~giran~ 267 (398)
T PRK13656 198 GEDWELWIDALDEAGVLAEGAKTVAYSYIGP---EL-------THPIYWDGTIGKAKKDLDRTALALNEKLAAKGGDAYV 267 (398)
T ss_pred cchHHHHHHHHHhcccccCCcEEEEEecCCc---ce-------eecccCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEE
Confidence 32221 22222221 127777776432 00 1111122467999999999999998774 799999
Q ss_pred EEeccccCC
Q 043169 267 LRFFTVYGP 275 (421)
Q Consensus 267 vrp~~v~G~ 275 (421)
+-.+.+-..
T Consensus 268 i~~g~~~T~ 276 (398)
T PRK13656 268 SVLKAVVTQ 276 (398)
T ss_pred EecCcccch
Confidence 998887764
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-10 Score=98.43 Aligned_cols=217 Identities=16% Similarity=0.090 Sum_probs=147.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMH 171 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~ 171 (421)
..++.|++||.|+++++.....|+.|.++.|++.+. ........+.++++|.-...-....... +..++-
T Consensus 54 ~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~--------~l~sw~~~vswh~gnsfssn~~k~~l~g--~t~v~e 123 (283)
T KOG4288|consen 54 WTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQ--------TLSSWPTYVSWHRGNSFSSNPNKLKLSG--PTFVYE 123 (283)
T ss_pred HHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcc--------hhhCCCcccchhhccccccCcchhhhcC--CcccHH
Confidence 468999999999999999999999999999875411 1111235677788887655544444443 377777
Q ss_pred cccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 043169 172 LAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE 251 (421)
Q Consensus 172 ~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~ 251 (421)
++|-. .+...+..+|-....+-.+++.+.|++ +|+|+|-.. ||. ++.-+ ..|-.+|.++|.
T Consensus 124 ~~ggf------gn~~~m~~ing~ani~a~kaa~~~gv~-~fvyISa~d-~~~----------~~~i~-rGY~~gKR~AE~ 184 (283)
T KOG4288|consen 124 MMGGF------GNIILMDRINGTANINAVKAAAKAGVP-RFVYISAHD-FGL----------PPLIP-RGYIEGKREAEA 184 (283)
T ss_pred HhcCc------cchHHHHHhccHhhHHHHHHHHHcCCc-eEEEEEhhh-cCC----------CCccc-hhhhccchHHHH
Confidence 77654 334556677878888899999999976 999999643 221 12122 479999999996
Q ss_pred HHHHHHHHhCCcEEEEEeccccCCCCCCCC-----hHHHHHHHHHcCCC-----eEEEecCCCCcceeecccHHHHHHHH
Q 043169 252 IAHTYNHIYGLSITGLRFFTVYGPWGRPDM-----AYFSFTRNILQGKP-----ITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 252 ~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
-+.. .++.+-+++|||.+||.+.-... .....+..+.+.-. +++ -+....+.+.++++|.+.
T Consensus 185 Ell~---~~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~-----lg~l~~ppvnve~VA~aa 256 (283)
T KOG4288|consen 185 ELLK---KFRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPL-----LGPLLAPPVNVESVALAA 256 (283)
T ss_pred HHHH---hcCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcc-----cccccCCCcCHHHHHHHH
Confidence 4443 45788999999999997432111 11122222332221 222 356778899999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHH
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILER 356 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~ 356 (421)
+.++.++. |- ..+++.|+.++-.+
T Consensus 257 l~ai~dp~-------f~----Gvv~i~eI~~~a~k 280 (283)
T KOG4288|consen 257 LKAIEDPD-------FK----GVVTIEEIKKAAHK 280 (283)
T ss_pred HHhccCCC-------cC----ceeeHHHHHHHHHH
Confidence 99999872 21 34777777766544
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.5e-10 Score=103.96 Aligned_cols=178 Identities=19% Similarity=0.130 Sum_probs=123.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
-.++++|.|+|+.|.||+.++..|+.++ .+++++|+ +..+...- ...... . .....+.+|+++..+.++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di--~~~~g~a~--Dl~~~~-~--~~~v~~~td~~~~~~~l~ga 77 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI--VGAPGVAA--DLSHID-T--PAKVTGYADGELWEKALRGA 77 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec--CCCccccc--chhhcC-c--CceEEEecCCCchHHHhCCC
Confidence 3677899999999999999999999665 68999998 22211111 111111 1 23344666655567788888
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCC--CCCCCCCCCCCCChH
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENV--PFSEADRTDQPASLY 242 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~--~~~e~~~~~~~~~~Y 242 (421)
|+||++||....+ ..+....+..|+..+.+++++++++++. ++|+++|..+-....-. ...+.. ..++...|
T Consensus 78 --DvVVitaG~~~~~--~~tR~dll~~N~~i~~~i~~~i~~~~~~-~iviv~SNPvdv~~~~~~~~~~~~s-g~p~~~vi 151 (321)
T PTZ00325 78 --DLVLICAGVPRKP--GMTRDDLFNTNAPIVRDLVAAVASSAPK-AIVGIVSNPVNSTVPIAAETLKKAG-VYDPRKLF 151 (321)
T ss_pred --CEEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCcHHHHHHHHHhhhhhcc-CCChhhee
Confidence 9999999974321 2345678999999999999999999976 89999996542211100 011111 12456678
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
|.+-+..-++-..+++..|+....|+ +.|+|...+
T Consensus 152 G~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 152 GVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred echhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence 77767778888888888999999998 889997555
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-08 Score=86.89 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=76.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
|+++||||+|++|. +++.|+++|++|++++|+.+. .+...........+.++.+|++|.+++.++++.+ +
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~----~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~ 75 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVK----LENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGP 75 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHH----HHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57999999976665 999999999999999985432 1111111112356888999999999999988765 4
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCC---CeEEEEcccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ---PSIVWASSSS 219 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~riV~~SS~~ 219 (421)
+|++|+.+ .+.++.++..+|++.++. -++|++=.+.
T Consensus 76 id~lv~~v------------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 76 FDLAVAWI------------------HSSAKDALSVVCRELDGSSETYRLFHVLGSA 114 (177)
T ss_pred CeEEEEec------------------cccchhhHHHHHHHHccCCCCceEEEEeCCc
Confidence 67777654 344678999999998852 1677775443
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.1e-09 Score=73.10 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=39.2
Q ss_pred HHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHh
Q 043169 354 LERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 354 l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~ 412 (421)
+++++|.+.++.+.+ .++++....++|++||+++|||+|+++|+|+|+++++|++++-
T Consensus 2 ~e~vtG~~i~~~~~~-rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np 59 (62)
T PF13950_consen 2 FEKVTGKKIPVEYAP-RRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNP 59 (62)
T ss_dssp HHHHHTS---EEEE----TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHST
T ss_pred cHHHHCCCCCceECC-CCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCc
Confidence 678899998887666 6899999999999999999999999999999999999998864
|
... |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-08 Score=93.67 Aligned_cols=174 Identities=20% Similarity=0.130 Sum_probs=118.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
..++|.|||++|.||+.++..|+.++ .+++++|++. .+... ...... .. .....++++.+++.+.++++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a--~Dl~~~-~~--~~~i~~~~~~~d~~~~l~~a-- 87 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVA--ADVSHI-NT--PAQVRGFLGDDQLGDALKGA-- 87 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeE--chhhhC-Cc--CceEEEEeCCCCHHHHcCCC--
Confidence 34699999999999999999999776 4799999865 11111 011111 11 12333544455577888888
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCC--CCCCCCCCCCCCCCCCChHHH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGL--NENVPFSEADRTDQPASLYAA 244 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~--~~~~~~~e~~~~~~~~~~Y~~ 244 (421)
|+|||+||....+ ..+....+..|+..+.++.+.++++++. ++|+++|--+=+. .....+... ...++...|+.
T Consensus 88 DiVVitAG~~~~~--g~~R~dll~~N~~i~~~i~~~i~~~~p~-aivivvSNPvD~~~~i~t~~~~~~-s~~p~~~viG~ 163 (323)
T PLN00106 88 DLVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEAVAKHCPN-ALVNIISNPVNSTVPIAAEVLKKA-GVYDPKKLFGV 163 (323)
T ss_pred CEEEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHHc-CCCCcceEEEE
Confidence 9999999985332 2345678999999999999999999976 7777777433100 000000011 12356678999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPW 276 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~ 276 (421)
+++..+++...++++.|+....|+ +.|+|..
T Consensus 164 ~~LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeH 194 (323)
T PLN00106 164 TTLDVVRANTFVAEKKGLDPADVD-VPVVGGH 194 (323)
T ss_pred ecchHHHHHHHHHHHhCCChhheE-EEEEEeC
Confidence 999999999999999999988884 5666654
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-08 Score=89.47 Aligned_cols=84 Identities=20% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCC----------------ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEccc
Q 043169 88 SGGMSVLVTGAA----------------GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151 (421)
Q Consensus 88 ~~~k~vlITG~s----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl 151 (421)
++||+||||+|. |++|++||++|+++|++|+++++......... .....+..+..|.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~-------~~~~~~~~V~s~~ 73 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDI-------NNQLELHPFEGII 73 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCccc-------CCceeEEEEecHH
Confidence 368999999886 99999999999999999999987432111100 0112344455644
Q ss_pred CCHHHHHHHhhccCCcEEEEcccccCc
Q 043169 152 NDAKLLAKLFDAVAFTHVMHLAAQAGV 178 (421)
Q Consensus 152 ~d~~~~~~~~~~~~~d~vi~~Ag~~~~ 178 (421)
...+.+.+++...++|+|||+|++...
T Consensus 74 d~~~~l~~~~~~~~~D~VIH~AAvsD~ 100 (229)
T PRK09620 74 DLQDKMKSIITHEKVDAVIMAAAGSDW 100 (229)
T ss_pred HHHHHHHHHhcccCCCEEEECccccce
Confidence 444677888876678999999999654
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-07 Score=91.48 Aligned_cols=98 Identities=31% Similarity=0.292 Sum_probs=76.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+|+|||.|| |+||+.++..|+++| .+|++++|+.++. .+.......+++.+++|+.|.+++.+++++. |+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~------~~i~~~~~~~v~~~~vD~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKC------ARIAELIGGKVEALQVDAADVDALVALIKDF--DL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHH------HHHHhhccccceeEEecccChHHHHHHHhcC--CE
Confidence 478999998 999999999999999 8999999964322 1222222348999999999999999999998 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|||++.... ...++++|.++|+ .+|-+|
T Consensus 72 VIn~~p~~~------------------~~~i~ka~i~~gv--~yvDts 99 (389)
T COG1748 72 VINAAPPFV------------------DLTILKACIKTGV--DYVDTS 99 (389)
T ss_pred EEEeCCchh------------------hHHHHHHHHHhCC--CEEEcc
Confidence 999997532 2367777777775 555554
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-07 Score=89.67 Aligned_cols=172 Identities=13% Similarity=0.089 Sum_probs=105.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-------CcEEEEeCCCCC--CChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHh
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG-------DGVVGLDNFNNY--YDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g-------~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
.+|+||||+|+||++++..|+..+ .+|++++++.+. .+... ..... . ......|+....++.+.+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~--~Dl~d---~-~~~~~~~~~~~~~~~~~l 76 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVV--MELQD---C-AFPLLKSVVATTDPEEAF 76 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccccee--eehhh---c-cccccCCceecCCHHHHh
Confidence 479999999999999999999854 589999985431 11100 00000 0 001122444445566778
Q ss_pred hccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEcccc---ccCCCCCCCCCCCCCCCC
Q 043169 162 DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSS---VYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 162 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~ 237 (421)
+++ |+|||+||.... ...+....++.|+.-...+.+.++++. ....+|.+|.-. .|- ..+.....+
T Consensus 77 ~~a--DiVI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~------~~k~~~~~~ 146 (325)
T cd01336 77 KDV--DVAILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALI------LLKYAPSIP 146 (325)
T ss_pred CCC--CEEEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHH------HHHHcCCCC
Confidence 877 999999998543 223457889999999999999888884 454666666511 010 000000001
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 238 PASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
+...=+.+.+..-++-..+++..++....++-..|+|....
T Consensus 147 ~~~ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~ 187 (325)
T cd01336 147 KENFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS 187 (325)
T ss_pred HHHEEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC
Confidence 11112234445556666677777888888887888886544
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.2e-07 Score=85.28 Aligned_cols=188 Identities=13% Similarity=0.143 Sum_probs=122.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCC--CChhHHHHHHHh-hcCCceEEEEcccCCHHHHHH
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD-------GVVGLDNFNNY--YDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAK 159 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~ 159 (421)
.++|.|+|++|.||+.++..|+.+|. +++++|+..+. .....-...... ....++.+. . .+ .+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~--~~----~~ 74 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-D--DP----NV 74 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-c--Cc----HH
Confidence 46899999999999999999998874 79999985432 222211111110 001122222 1 12 34
Q ss_pred HhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEcccc---ccCCCCCCCCCCCCCC
Q 043169 160 LFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSS---VYGLNENVPFSEADRT 235 (421)
Q Consensus 160 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~---v~g~~~~~~~~e~~~~ 235 (421)
.++++ |+||.+||.... ...+....+..|..-...+.+.+++++. ...+|.+|.-. .|-. ... ...
T Consensus 75 ~~~da--DivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~-----~k~-sg~ 144 (322)
T cd01338 75 AFKDA--DWALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA-----MKN-APD 144 (322)
T ss_pred HhCCC--CEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH-----HHH-cCC
Confidence 56666 999999997432 2234567899999999999999998884 65677776411 1100 000 001
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCe
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPI 296 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 296 (421)
.++...|+.+++..+++...+++.+|++...++..+|||+... ..++.+......|.++
T Consensus 145 ~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~--s~vp~~S~~~v~g~pl 203 (322)
T cd01338 145 IPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP--TQYPDFTNATIGGKPA 203 (322)
T ss_pred CChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc--cEEEehhhcEECCEeH
Confidence 2456789999999999999999999999999999999998743 3333333333444443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-07 Score=89.47 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=62.3
Q ss_pred cCCCCCEEEEEcC----------------CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEc
Q 043169 86 HRSGGMSVLVTGA----------------AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149 (421)
Q Consensus 86 ~~~~~k~vlITG~----------------sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~ 149 (421)
.+++||+|+|||| +|.+|.+++++|+++|++|++++++.+ .. ...+ +..+
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-----------~~~~--~~~~ 249 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-----------TPAG--VKRI 249 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-----------CCCC--cEEE
Confidence 4578999999999 788999999999999999999988542 10 0112 3467
Q ss_pred ccCCHHHHHHHhhcc--CCcEEEEcccccCc
Q 043169 150 DINDAKLLAKLFDAV--AFTHVMHLAAQAGV 178 (421)
Q Consensus 150 Dl~d~~~~~~~~~~~--~~d~vi~~Ag~~~~ 178 (421)
|+++.+++.+++.+. ++|++|||||+...
T Consensus 250 dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 250 DVESAQEMLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEccccccc
Confidence 999998888887653 57999999998653
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.5e-07 Score=81.52 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=48.5
Q ss_pred EEE-cCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC--HHHHHHHhhccCCcEEE
Q 043169 94 LVT-GAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND--AKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 94 lIT-G~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~~~~d~vi 170 (421)
.|| .+||++|.+|+++|+++|++|++++|..... .....++.++.++..+ .+.+.+.+.. .|+||
T Consensus 19 ~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~----------~~~~~~v~~i~v~s~~~m~~~l~~~~~~--~DivI 86 (229)
T PRK06732 19 GITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVK----------PEPHPNLSIIEIENVDDLLETLEPLVKD--HDVLI 86 (229)
T ss_pred eecCccchHHHHHHHHHHHhCCCEEEEEECccccc----------CCCCCCeEEEEEecHHHHHHHHHHHhcC--CCEEE
Confidence 444 4567899999999999999999998743210 0012456666654332 2345555554 49999
Q ss_pred EcccccC
Q 043169 171 HLAAQAG 177 (421)
Q Consensus 171 ~~Ag~~~ 177 (421)
||||+..
T Consensus 87 h~AAvsd 93 (229)
T PRK06732 87 HSMAVSD 93 (229)
T ss_pred eCCccCC
Confidence 9999865
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.6e-06 Score=82.84 Aligned_cols=76 Identities=29% Similarity=0.329 Sum_probs=56.3
Q ss_pred EEEEcCCChhHHHHHHHHHHCC-C-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 93 VLVTGAAGFVGTHVSLALKKRG-D-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+|.|| |++|+.+++.|++++ . +|++.+|+.++.+ .........++.++++|+.|.+++.++++++ |+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~--dvVi 72 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAE-----RLAEKLLGDRVEAVQVDVNDPESLAELLRGC--DVVI 72 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH-----HHHT--TTTTEEEEE--TTTHHHHHHHHTTS--SEEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHH-----HHHhhccccceeEEEEecCCHHHHHHHHhcC--CEEE
Confidence 789999 999999999999997 4 8999999542111 1111114578999999999999999999999 9999
Q ss_pred Eccccc
Q 043169 171 HLAAQA 176 (421)
Q Consensus 171 ~~Ag~~ 176 (421)
|++|..
T Consensus 73 n~~gp~ 78 (386)
T PF03435_consen 73 NCAGPF 78 (386)
T ss_dssp E-SSGG
T ss_pred ECCccc
Confidence 999874
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-06 Score=76.34 Aligned_cols=81 Identities=21% Similarity=0.191 Sum_probs=61.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+++++++|+||+|++|+.+++.|+++|++|+++.|+.++.+.. ........+.....+|..+.+++.++++++ |
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--d 99 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKA----ADSLRARFGEGVGAVETSDDAARAAAIKGA--D 99 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH----HHHHHhhcCCcEEEeeCCCHHHHHHHHhcC--C
Confidence 5789999999999999999999999999999999864322211 111111124556677899999999999887 9
Q ss_pred EEEEccc
Q 043169 168 HVMHLAA 174 (421)
Q Consensus 168 ~vi~~Ag 174 (421)
+||++..
T Consensus 100 iVi~at~ 106 (194)
T cd01078 100 VVFAAGA 106 (194)
T ss_pred EEEECCC
Confidence 9999664
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.8e-07 Score=79.81 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=50.1
Q ss_pred EEEc-CCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----CCc
Q 043169 94 LVTG-AAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----AFT 167 (421)
Q Consensus 94 lITG-~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~~d 167 (421)
.||. ++|+||.++|++|+++|++|+++++... . ... ....+|+.+.+++.++++.+ ++|
T Consensus 18 ~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~----------l---~~~--~~~~~Dv~d~~s~~~l~~~v~~~~g~iD 82 (227)
T TIGR02114 18 SITNHSTGHLGKIITETFLSAGHEVTLVTTKRA----------L---KPE--PHPNLSIREIETTKDLLITLKELVQEHD 82 (227)
T ss_pred eecCCcccHHHHHHHHHHHHCCCEEEEEcChhh----------c---ccc--cCCcceeecHHHHHHHHHHHHHHcCCCC
Confidence 4444 4789999999999999999999876211 0 000 01357999988888776543 579
Q ss_pred EEEEcccccC
Q 043169 168 HVMHLAAQAG 177 (421)
Q Consensus 168 ~vi~~Ag~~~ 177 (421)
++|||||+..
T Consensus 83 iLVnnAgv~d 92 (227)
T TIGR02114 83 ILIHSMAVSD 92 (227)
T ss_pred EEEECCEecc
Confidence 9999999754
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-06 Score=81.44 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=68.6
Q ss_pred EEEEEcCCChhHHHHHHHHHH----CCCcEEEEeCCCCCCChhHHHHHHHhhc--CCceEEEEcccCCHHHHHHHhhccC
Q 043169 92 SVLVTGAAGFVGTHVSLALKK----RGDGVVGLDNFNNYYDPSLKKARKALLN--NHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.++|.|||||-|..+++++.+ .|...-+..|+.++..+.++........ ...+ ++.+|.+|++++.+.++.+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~emak~~- 84 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMAKQA- 84 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHHhhh-
Confidence 589999999999999999999 6888999999888776666554443321 2334 8999999999999999998
Q ss_pred CcEEEEcccccC
Q 043169 166 FTHVMHLAAQAG 177 (421)
Q Consensus 166 ~d~vi~~Ag~~~ 177 (421)
.+|+||+|+..
T Consensus 85 -~vivN~vGPyR 95 (423)
T KOG2733|consen 85 -RVIVNCVGPYR 95 (423)
T ss_pred -EEEEeccccce
Confidence 99999999853
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-06 Score=79.63 Aligned_cols=85 Identities=15% Similarity=0.201 Sum_probs=60.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
..++|+++|+|+ |++|++++..|++.|++ |++++|+.+..+... ...... .....+.+..+|+.+.+++.+.++..
T Consensus 123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~-~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~ 200 (289)
T PRK12548 123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAE-QTAEKIKQEVPECIVNVYDLNDTEKLKAEIASS 200 (289)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHH-HHHHHHhhcCCCceeEEechhhhhHHHhhhccC
Confidence 357899999998 89999999999999986 999999652111111 111111 11234556678998888888888776
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
|+|||+-.+
T Consensus 201 --DilINaTp~ 209 (289)
T PRK12548 201 --DILVNATLV 209 (289)
T ss_pred --CEEEEeCCC
Confidence 999998644
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.7e-06 Score=75.01 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=71.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+|||+||||. |+.|++.|.++|++|++..++...... ....+...+..+..|.+++.+++++.++|+||
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~---------~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VI 70 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHL---------YPIHQALTVHTGALDPQELREFLKRHSIDILV 70 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccc---------ccccCCceEEECCCCHHHHHHHHHhcCCCEEE
Confidence 68999999999 999999999999999999885542211 11222334556677888899999998999999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~ 208 (421)
+.+.... ..-+.++.++|++.++
T Consensus 71 DAtHPfA---------------~~is~~a~~a~~~~~i 93 (256)
T TIGR00715 71 DATHPFA---------------AQITTNATAVCKELGI 93 (256)
T ss_pred EcCCHHH---------------HHHHHHHHHHHHHhCC
Confidence 9886532 2346789999999986
|
This enzyme was found to be a monomer by gel filtration. |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.9e-06 Score=80.40 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=74.2
Q ss_pred CCCCCEEEEEcC---------------CC-hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcc
Q 043169 87 RSGGMSVLVTGA---------------AG-FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150 (421)
Q Consensus 87 ~~~~k~vlITG~---------------sG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D 150 (421)
+++||+|+|||| |+ .+|.+++++|.++|++|+++.+..... .... ....|
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~------------~~~~--~~~~~ 247 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL------------TPPG--VKSIK 247 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC------------CCCC--cEEEE
Confidence 478999999999 44 599999999999999999988743210 1122 24579
Q ss_pred cCCHHHH-HHHhhcc--CCcEEEEcccccCchhh---ccC---CchhhhhhHHHHHHHHHHHHhcC
Q 043169 151 INDAKLL-AKLFDAV--AFTHVMHLAAQAGVRYA---MQN---PHSYVHSNIAGLVTLLEACKSAN 207 (421)
Q Consensus 151 l~d~~~~-~~~~~~~--~~d~vi~~Ag~~~~~~~---~~~---~~~~~~~N~~g~~~l~~~~~~~~ 207 (421)
+++.+++ +++++.. +.|++|||||+...... ... ....+..|+.-+..+++.+++..
T Consensus 248 v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 248 VSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred eccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 9988888 5555332 46999999999754211 111 12234567777888888877654
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=76.63 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=103.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCC--CCCChhHHHHHHHhhcCCceEEEEcccCCH--------
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD-------GVVGLDNFN--NYYDPSLKKARKALLNNHGVFVIEGDINDA-------- 154 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~-------~V~~~~r~~--~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-------- 154 (421)
+|.||||+|.||+.++..|+.+|. +++++|++. +.. +....|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~-----------------~g~~~Dl~d~~~~~~~~~ 64 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKAL-----------------EGVVMELQDCAFPLLKGV 64 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCcc-----------------ceeeeehhhhcccccCCc
Confidence 689999999999999999998762 489999865 222 1222233322
Q ss_pred ---HHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEcccc---ccCCCCCC
Q 043169 155 ---KLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSS---VYGLNENV 227 (421)
Q Consensus 155 ---~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~---v~g~~~~~ 227 (421)
....+.++++ |+|||+||.... ...+....+..|..-.+.+.+.+++.+ ....+|.+|--. .|-.
T Consensus 65 ~i~~~~~~~~~~a--DiVVitAG~~~~--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---- 136 (323)
T cd00704 65 VITTDPEEAFKDV--DVAILVGAFPRK--PGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA---- 136 (323)
T ss_pred EEecChHHHhCCC--CEEEEeCCCCCC--cCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----
Confidence 2345677777 999999997432 223456789999999999999999884 665677666411 1100
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 228 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
+..... .++...-+.+.+..-++-..+++..++....|+-..|+|..++
T Consensus 137 -~k~sg~-~p~~~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 185 (323)
T cd00704 137 -LKNAPN-LPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN 185 (323)
T ss_pred -HHHcCC-CCHHHEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecccC
Confidence 000000 0122223446666667777777777888777776678886544
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.7e-05 Score=73.93 Aligned_cols=172 Identities=18% Similarity=0.105 Sum_probs=101.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHH-C--CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKK-R--GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~-~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|+|.||+|.||++++..|.. . ++++++++++.. .+. ...+.........+.+ .+.+++.+.++++ |
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g----~alDl~~~~~~~~i~~--~~~~d~~~~l~~~--D 71 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPG----VAVDLSHIPTAVKIKG--FSGEDPTPALEGA--D 71 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Ccc----eehhhhcCCCCceEEE--eCCCCHHHHcCCC--C
Confidence 6899999999999999998855 2 467888888633 111 0001101011112222 1122334556666 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccc----cCCCCCCCCCCCCCCCCCCChHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV----YGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v----~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
+||.++|....+ ..+....+..|......+++.+++++.. ++|.+.|--+ |-... .-...... ++....+
T Consensus 72 iVIitaG~~~~~--~~~R~dll~~N~~i~~~ii~~i~~~~~~-~ivivvsNP~D~~t~~~~~-~~~~~sg~--p~~rvig 145 (312)
T PRK05086 72 VVLISAGVARKP--GMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIITNPVNTTVAIAAE-VLKKAGVY--DKNKLFG 145 (312)
T ss_pred EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchHHHHHHHHH-HHHHhcCC--CHHHEEe
Confidence 999999975421 2345678999999999999999999876 6776666322 10000 00000000 1111222
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 244 ATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
.+-+..-++...+++..|++..-|+ +.|+|...+
T Consensus 146 ~~~Lds~R~~~~ia~~l~~~~~~v~-~~v~GeHg~ 179 (312)
T PRK05086 146 VTTLDVIRSETFVAELKGKQPGEVE-VPVIGGHSG 179 (312)
T ss_pred eecHHHHHHHHHHHHHhCCChhheE-EEEEEecCC
Confidence 2224445666667777788888887 788887533
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.3e-05 Score=64.38 Aligned_cols=115 Identities=19% Similarity=0.207 Sum_probs=76.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcC-CceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNN-HGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|.|+|++|.+|++++..|...+ .++++++++.+..+............. ....+... ++ +.++++ |
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~---~~----~~~~~a--D 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSG---DY----EALKDA--D 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEES---SG----GGGTTE--S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccc---cc----cccccc--c
Confidence 589999999999999999999987 579999986542222111111111111 22333332 22 335556 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
+||..||.... ...+....++.|..-...+.+.+.+.+....++.+|
T Consensus 72 ivvitag~~~~--~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 72 IVVITAGVPRK--PGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp EEEETTSTSSS--TTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred EEEEecccccc--ccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 99999997432 223456788999999999999999988765666555
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=68.95 Aligned_cols=170 Identities=13% Similarity=0.103 Sum_probs=103.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+++|.|+|+ |.||+.++..|+.+|. +++++|++.+..+...............+.... .+. +.++++
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~---~~~----~~~~~a- 74 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA---GDY----SDCKDA- 74 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe---CCH----HHhCCC-
Confidence 56789999998 9999999999999985 799999976655443332222111112333332 232 235666
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLY 242 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y 242 (421)
|+||..||.... ...+....+..|..-...+++.+++.+....+|.+|--. .|-. ..... .++....
T Consensus 75 -divIitag~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~-----~k~sg--~p~~~vi 144 (315)
T PRK00066 75 -DLVVITAGAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT-----WKLSG--FPKERVI 144 (315)
T ss_pred -CEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH-----HHHhC--CCHHHEe
Confidence 999999997432 123456788999999999999999888766777766411 0000 00000 0111111
Q ss_pred HH-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 043169 243 AA-TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWG 277 (421)
Q Consensus 243 ~~-sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~ 277 (421)
+. +-+...++...+++..|++..-++. .|+|...
T Consensus 145 G~gt~LDs~R~~~~la~~l~v~~~~V~~-~viGeHG 179 (315)
T PRK00066 145 GSGTSLDSARFRYMLSEKLDVDPRSVHA-YIIGEHG 179 (315)
T ss_pred ecCchHHHHHHHHHHHHHhCCCcccEEE-EEEecCC
Confidence 22 2222344555566667888777776 4678643
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.7e-05 Score=71.12 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=103.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH---------
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD-------GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK--------- 155 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--------- 155 (421)
+|.|+|++|.||++++..|+.+|. +++++|+..+.. ..+....|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~---------------~a~g~~~Dl~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK---------------VLEGVVMELMDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc---------------ccceeEeehhcccchhcCceec
Confidence 489999999999999999998653 589999844321 1122233443332
Q ss_pred --HHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEcccc---ccCCCCCCCC
Q 043169 156 --LLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSS---VYGLNENVPF 229 (421)
Q Consensus 156 --~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~---v~g~~~~~~~ 229 (421)
...+.++++ |+||++||..... ..+....+..|+.-.+.+.+.+++++ ....+|.+|.-. .|-...
T Consensus 66 ~~~~~~~~~~a--DiVVitAG~~~~~--~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~---- 137 (324)
T TIGR01758 66 THDPAVAFTDV--DVAILVGAFPRKE--GMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSN---- 137 (324)
T ss_pred cCChHHHhCCC--CEEEEcCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHH----
Confidence 234566767 9999999975321 23457789999999999999999884 655677666411 110000
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 230 SEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 230 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
....+ ++...=+.+.+..-++-..+++..|+....|+-..|+|....
T Consensus 138 -~sg~~-~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 184 (324)
T TIGR01758 138 -YAPSI-PPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSS 184 (324)
T ss_pred -HcCCC-CcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCCC
Confidence 00001 111222234555566667777778999888888888887544
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00029 Score=67.61 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC------------------Chh--HHHHHHHhhcCCceEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY------------------DPS--LKKARKALLNNHGVFV 146 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~------------------~~~--~~~~~~~~~~~~~v~~ 146 (421)
+++++|+|.|+ |++|+++++.|++.|. +++++|++.-.. .++ ..+........-.++.
T Consensus 22 L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 22 IREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 67889999997 8999999999999997 788888864100 000 0111112223445667
Q ss_pred EEcccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 147 ~~~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
+..|++ .+.+.++++++ |+||.+.. |...-..+-++|.+.+. .+|+.+..+.+|
T Consensus 101 ~~~~~~-~~~~~~~~~~~--DlVid~~D-----------------~~~~r~~in~~~~~~~i--p~i~~~~~g~~G 154 (338)
T PRK12475 101 VVTDVT-VEELEELVKEV--DLIIDATD-----------------NFDTRLLINDLSQKYNI--PWIYGGCVGSYG 154 (338)
T ss_pred EeccCC-HHHHHHHhcCC--CEEEEcCC-----------------CHHHHHHHHHHHHHcCC--CEEEEEecccEE
Confidence 777775 45677888777 99998753 12222345677888875 678877766554
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.1e-05 Score=65.16 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=46.6
Q ss_pred CCCCEEEEEcC----------------CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEccc
Q 043169 88 SGGMSVLVTGA----------------AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151 (421)
Q Consensus 88 ~~~k~vlITG~----------------sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl 151 (421)
++||+||||+| ||-.|.+||+++..+|++|+.+....+ ...+.++..+. +
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~------------~~~p~~~~~i~--v 66 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS------------LPPPPGVKVIR--V 66 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE---
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc------------ccccccceEEE--e
Confidence 36788888886 588999999999999999999987421 01134666665 4
Q ss_pred CCHHHH----HHHhhccCCcEEEEcccccCc
Q 043169 152 NDAKLL----AKLFDAVAFTHVMHLAAQAGV 178 (421)
Q Consensus 152 ~d~~~~----~~~~~~~~~d~vi~~Ag~~~~ 178 (421)
.+.+++ .+.+.+. |++||+|++...
T Consensus 67 ~sa~em~~~~~~~~~~~--Di~I~aAAVsDf 95 (185)
T PF04127_consen 67 ESAEEMLEAVKELLPSA--DIIIMAAAVSDF 95 (185)
T ss_dssp SSHHHHHHHHHHHGGGG--SEEEE-SB--SE
T ss_pred cchhhhhhhhccccCcc--eeEEEecchhhe
Confidence 444443 4444445 999999999764
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00032 Score=67.32 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC------------------ChhH--HHHHHHhhcCCceEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY------------------DPSL--KKARKALLNNHGVFV 146 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~------------------~~~~--~~~~~~~~~~~~v~~ 146 (421)
++.++|+|.|+ |++|+++++.|++.|. ++.++|.+.-.. .++. .+........-.+..
T Consensus 22 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 22 LREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 67789999998 9999999999999997 899998853100 0000 111111123344666
Q ss_pred EEcccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 147 ~~~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
+..+++ .+.+.++++++ |+||.+.. |...-..+-++|.+.+. .+|+.++.+.||
T Consensus 101 ~~~~~~-~~~~~~~~~~~--DlVid~~D-----------------n~~~r~~ln~~~~~~~i--P~i~~~~~g~~G 154 (339)
T PRK07688 101 IVQDVT-AEELEELVTGV--DLIIDATD-----------------NFETRFIVNDAAQKYGI--PWIYGACVGSYG 154 (339)
T ss_pred EeccCC-HHHHHHHHcCC--CEEEEcCC-----------------CHHHHHHHHHHHHHhCC--CEEEEeeeeeee
Confidence 666775 45567777776 99998752 23334457788888875 688888766655
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.2e-05 Score=71.18 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=51.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHC-C-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKR-G-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.+++|+|+||||+|+||+.+++.|+++ | .+++++.|+.++. .....+ +..+|+. .+.+++.+.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl----~~La~e--------l~~~~i~---~l~~~l~~a 216 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERL----QELQAE--------LGGGKIL---SLEEALPEA 216 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHH----HHHHHH--------hccccHH---hHHHHHccC
Confidence 478999999999999999999999865 5 5888888853311 111111 1123443 355677766
Q ss_pred CCcEEEEccccc
Q 043169 165 AFTHVMHLAAQA 176 (421)
Q Consensus 165 ~~d~vi~~Ag~~ 176 (421)
|+|||+++..
T Consensus 217 --DiVv~~ts~~ 226 (340)
T PRK14982 217 --DIVVWVASMP 226 (340)
T ss_pred --CEEEECCcCC
Confidence 9999999864
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00059 Score=64.85 Aligned_cols=168 Identities=15% Similarity=0.140 Sum_probs=103.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALL-NNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
++|.|.|+ |++|+.++..|+..| ++|++++++.+..+........... ....+.+.. .+.+ .++++ |
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~----~l~~a--D 70 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYS----DCKDA--D 70 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHH----HhCCC--C
Confidence 47899996 999999999999999 5899999977654443332222111 112222322 2333 24556 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLYAA 244 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y~~ 244 (421)
+||+++|.... ...+....+..|..-...+.+.+++++....+|.+|.-. .|-.. ... ..++....+.
T Consensus 71 IVIitag~~~~--~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~-----~~~--g~p~~~v~g~ 141 (306)
T cd05291 71 IVVITAGAPQK--PGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQ-----KLS--GLPKNRVIGT 141 (306)
T ss_pred EEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHH-----HHh--CcCHHHEeec
Confidence 99999997432 223445788899999999999999988776777776511 11000 000 0011122222
Q ss_pred -HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 245 -TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 245 -sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
+-+...++...+++..|++...|+- .|+|....
T Consensus 142 gt~LDs~R~~~~la~~l~v~~~~v~~-~V~G~Hg~ 175 (306)
T cd05291 142 GTSLDTARLRRALAEKLNVDPRSVHA-YVLGEHGD 175 (306)
T ss_pred cchHHHHHHHHHHHHHHCCCcccceE-EEEecCCC
Confidence 3334455666666777888888875 78987543
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00039 Score=66.01 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=98.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCC--CCCChhHHHHHHHhhcCCceEEEEcccC-CHHHHHHHhhccC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFN--NYYDPSLKKARKALLNNHGVFVIEGDIN-DAKLLAKLFDAVA 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~--~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~~ 165 (421)
|+|.|+|++|.+|..++..|+..|. +|++++|.. +..+......... ........ ....+ |. +.++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~-~~~~~~~~-~i~~~~d~----~~l~~a- 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDA-LAAAGIDA-EIKISSDL----SDVAGS- 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhc-hhccCCCc-EEEECCCH----HHhCCC-
Confidence 6899999999999999999999986 499999944 2222222111111 11111111 11122 32 236666
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLY 242 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y 242 (421)
|+||-++|.... ...+....+..|..-...+.+.+.+.+....+|.+++.. .|-.... . ..++....
T Consensus 74 -DiViitag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~-----~--g~~~~~vi 143 (309)
T cd05294 74 -DIVIITAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKE-----S--GFDKNRVF 143 (309)
T ss_pred -CEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHh-----c--CCCHHHEe
Confidence 999999996421 112335678889999999999888887665777777632 1100000 0 01112222
Q ss_pred HH-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 243 AA-TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 243 ~~-sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
+. +-+...++...+++..++....|+ +.|+|...+
T Consensus 144 G~gt~LDs~R~~~~la~~l~v~~~~v~-~~viGeHg~ 179 (309)
T cd05294 144 GLGTHLDSLRFKVAIAKHFNVHISEVH-TRIIGEHGD 179 (309)
T ss_pred eccchHHHHHHHHHHHHHHCcChHHeE-EEEEecCCC
Confidence 22 233344555556666677766665 566676543
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00051 Score=65.42 Aligned_cols=172 Identities=13% Similarity=0.077 Sum_probs=106.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCC--CChhHHHHHHHh-hcCCceEEEEcccCCHHHHHH
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD-------GVVGLDNFNNY--YDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAK 159 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~ 159 (421)
..+|.|+|++|.+|++++..|+.+|. +++++|+..+. ............ ....++.+. . ...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~------~~~~ 75 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-T------DPEE 75 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-c------ChHH
Confidence 45899999999999999999998883 79999986422 322221111111 000122211 1 1234
Q ss_pred HhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEcccc---ccCCCCCCCCCCCCCC
Q 043169 160 LFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSS---VYGLNENVPFSEADRT 235 (421)
Q Consensus 160 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~---v~g~~~~~~~~e~~~~ 235 (421)
.++++ |+||.+||.... ...+....+..|..-.+.+.+.+++++. ...++.+|--. .|-. .+..+-
T Consensus 76 ~~~da--DvVVitAG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~------~k~s~g 145 (323)
T TIGR01759 76 AFKDV--DAALLVGAFPRK--PGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA------SKNAPD 145 (323)
T ss_pred HhCCC--CEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH------HHHcCC
Confidence 56666 999999997432 2245567899999999999999999886 54666665411 1100 000000
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
.++....+.+.+..-++-..+++..|+....++-..|+|....
T Consensus 146 ~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 188 (323)
T TIGR01759 146 IPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN 188 (323)
T ss_pred CCHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC
Confidence 1122233446666667777777878998888887788887554
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00026 Score=74.94 Aligned_cols=170 Identities=20% Similarity=0.166 Sum_probs=114.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
..|..+|+||-|+.|.+|++-|..+|++ +++..|+--+.-......+.-......|.+-..|++..+..+++++..
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl 1846 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKL 1846 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhc
Confidence 3578999999999999999999999986 555566543332222233332333445666677888888777777765
Q ss_pred -CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
.+--|+|+|.+... +.+.++++..-+.-+.||.+|=+..++.-. -.-||..||.+. | .-...
T Consensus 1847 ~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvsc-G-----------RGN~G 1914 (2376)
T KOG1202|consen 1847 GPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSC-G-----------RGNAG 1914 (2376)
T ss_pred ccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecc-c-----------CCCCc
Confidence 45679999987532 223445556667778888888887776543 237888888653 1 12345
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEecc
Q 043169 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~ 271 (421)
.+.|+-+-.++|+++..-+. .|++-+.|-=|.
T Consensus 1915 QtNYG~aNS~MERiceqRr~-~GfPG~AiQWGA 1946 (2376)
T KOG1202|consen 1915 QTNYGLANSAMERICEQRRH-EGFPGTAIQWGA 1946 (2376)
T ss_pred ccccchhhHHHHHHHHHhhh-cCCCcceeeeec
Confidence 68899999999998876444 466555554443
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0014 Score=65.45 Aligned_cols=173 Identities=16% Similarity=0.156 Sum_probs=109.2
Q ss_pred CCCCEEEEEcCC-ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-----cCCceEEEEcccCCHHHHHHHh
Q 043169 88 SGGMSVLVTGAA-GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL-----NNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 88 ~~~k~vlITG~s-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
-.++.++||||+ |.||..++..|+..|++|++..-+ .+..+.+.-+... ....+-++..++.+..+++.++
T Consensus 394 y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~---~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlI 470 (866)
T COG4982 394 YGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSR---LSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALI 470 (866)
T ss_pred cccceEEEecCCCcchHHHHHHHHHhCCcEEEEEccc---ccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHH
Confidence 468899999987 779999999999999999987542 2233322222111 2244678888998877777776
Q ss_pred hcc-------------------CCcEEEEcccccCc-hhhccCCch--hhhhhHHHHHHHHHHHHhcCCCC------eEE
Q 043169 162 DAV-------------------AFTHVMHLAAQAGV-RYAMQNPHS--YVHSNIAGLVTLLEACKSANPQP------SIV 213 (421)
Q Consensus 162 ~~~-------------------~~d~vi~~Ag~~~~-~~~~~~~~~--~~~~N~~g~~~l~~~~~~~~~~~------riV 213 (421)
+-+ .||.+|-.|++.-. ....-+++. .+++=+.....|+-.+++.+..+ ++|
T Consensus 471 ewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVV 550 (866)
T COG4982 471 EWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVV 550 (866)
T ss_pred HHhccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEE
Confidence 532 48889999987422 222233333 33333344455555555444321 455
Q ss_pred EEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCC
Q 043169 214 WASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY----GLSITGLRFFTVYGPW 276 (421)
Q Consensus 214 ~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~~vrp~~v~G~~ 276 (421)
.-.|-.. -..-....|+.+|++.+.++..+..+. -+.++--+.|++-|.+
T Consensus 551 LPgSPNr-------------G~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTG 604 (866)
T COG4982 551 LPGSPNR-------------GMFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTG 604 (866)
T ss_pred ecCCCCC-------------CccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecccc
Confidence 5444221 011234779999999999999988764 2566666777777764
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=58.94 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCC--------------hhHH----HHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYD--------------PSLK----KARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~--------------~~~~----~~~~~~~~~~~v~~~~ 148 (421)
+++++|+|.|+ |++|+++++.|+..|. +++++|.+.-..+ ..+. +......+.-.++.+.
T Consensus 19 l~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 19 LLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred hcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 67889999996 9999999999999996 7898887631100 0000 0111111223344444
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
.++. .+.+.++++++ |+||.+... ...-..+-++|++.+. .+|+.+..+.+|
T Consensus 98 ~~i~-~~~~~~~~~~~--D~Vi~~~d~-----------------~~~r~~l~~~~~~~~i--p~i~~~~~g~~G 149 (202)
T TIGR02356 98 ERVT-AENLELLINNV--DLVLDCTDN-----------------FATRYLINDACVALGT--PLISAAVVGFGG 149 (202)
T ss_pred hcCC-HHHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeccCeE
Confidence 4554 35667778777 999987532 2223456778888875 688877655544
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00057 Score=68.75 Aligned_cols=77 Identities=26% Similarity=0.311 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+++|+|+|+|+++ +|..+++.|+++|++|++.++.... ..... .......++.++.+|..+ +... ++|
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~---~~~~~-~~~l~~~~~~~~~~~~~~-----~~~~--~~d 70 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEED---QLKEA-LEELGELGIELVLGEYPE-----EFLE--GVD 70 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchH---HHHHH-HHHHHhcCCEEEeCCcch-----hHhh--cCC
Confidence 5789999999866 9999999999999999999885421 11111 112233467788888876 2233 359
Q ss_pred EEEEccccc
Q 043169 168 HVMHLAAQA 176 (421)
Q Consensus 168 ~vi~~Ag~~ 176 (421)
+||+++|..
T Consensus 71 ~vv~~~g~~ 79 (450)
T PRK14106 71 LVVVSPGVP 79 (450)
T ss_pred EEEECCCCC
Confidence 999999863
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.046 Score=45.60 Aligned_cols=207 Identities=14% Similarity=0.136 Sum_probs=116.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC--C-H----HHHHHHhh
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN--D-A----KLLAKLFD 162 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d-~----~~~~~~~~ 162 (421)
..+|+|-||-|-+|+++++.+.+++|-|.-++..++... ..-.++..|-+ . . +.+.+.+.
T Consensus 3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~A-------------d~sI~V~~~~swtEQe~~v~~~vg~sL~ 69 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA-------------DSSILVDGNKSWTEQEQSVLEQVGSSLQ 69 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc-------------cceEEecCCcchhHHHHHHHHHHHHhhc
Confidence 357999999999999999999999999988876443110 11122333322 1 1 22344455
Q ss_pred ccCCcEEEEcccccCch-h----hccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc-ccCCCCCCCCCCCCCCC
Q 043169 163 AVAFTHVMHLAAQAGVR-Y----AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS-VYGLNENVPFSEADRTD 236 (421)
Q Consensus 163 ~~~~d~vi~~Ag~~~~~-~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~-v~g~~~~~~~~e~~~~~ 236 (421)
+.+.|.|++.||-.... . ..++.+.+++-.+....--.+.+-++-..+-++.+..+. ..+ ..
T Consensus 70 gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~------------gT 137 (236)
T KOG4022|consen 70 GEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALG------------GT 137 (236)
T ss_pred ccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccC------------CC
Confidence 55889999999865321 1 112233444444443222222332221112344444322 221 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh-CC----cEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY-GL----SITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~-gi----~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+..-.|+.+|.+...+++.++.+. |+ -...|-|-.+-.|-.+..+ | + ...-+|
T Consensus 138 PgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwM-------------P--------~-ADfssW 195 (236)
T KOG4022|consen 138 PGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWM-------------P--------N-ADFSSW 195 (236)
T ss_pred CcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccccC-------------C--------C-CcccCc
Confidence 456789999999999999998663 33 3455556555555222111 0 0 112357
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+....+++-++.-.........|....|...+
T Consensus 196 TPL~fi~e~flkWtt~~~RPssGsLlqi~Ttn 227 (236)
T KOG4022|consen 196 TPLSFISEHFLKWTTETSRPSSGSLLQITTTN 227 (236)
T ss_pred ccHHHHHHHHHHHhccCCCCCCCceEEEEecC
Confidence 77788888777766544344556666665544
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0019 Score=53.34 Aligned_cols=110 Identities=23% Similarity=0.288 Sum_probs=71.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCC------C--C-C-----hh----HHHHHHHhhcCCceEEEEcc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNN------Y--Y-D-----PS----LKKARKALLNNHGVFVIEGD 150 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~------~--~-~-----~~----~~~~~~~~~~~~~v~~~~~D 150 (421)
.++|+|.|+ |++|+.+++.|++.|. +++++|.+.= + . . .. .+....+..+..++..+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 468999997 9999999999999997 6888876431 0 0 0 01 11112222234566777777
Q ss_pred cCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 151 l~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
+ +.+...++++++ |+||.+..- ......+.+.|++.+. .+|+.+..+.+|
T Consensus 81 ~-~~~~~~~~~~~~--d~vi~~~d~-----------------~~~~~~l~~~~~~~~~--p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 I-DEENIEELLKDY--DIVIDCVDS-----------------LAARLLLNEICREYGI--PFIDAGVNGFYG 130 (135)
T ss_dssp C-SHHHHHHHHHTS--SEEEEESSS-----------------HHHHHHHHHHHHHTT---EEEEEEEETTEE
T ss_pred c-ccccccccccCC--CEEEEecCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeecCEE
Confidence 7 556677888776 999987532 3334567778888885 788877665443
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0012 Score=65.07 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=109.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC-------CC--cEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHH
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKR-------GD--GVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLA 158 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~-------g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~ 158 (421)
+.-+|.|+|++|.||.+++-.|+.. |. ++++++++.+..+...-...... ....++.+.. .++
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~---~~y---- 171 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGI---DPY---- 171 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEec---CCH----
Confidence 4468999999999999999999988 64 78999998776654443322221 1112232222 233
Q ss_pred HHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHh-cCCCCeEEEEcccc---ccCCCCCCCCCCCCC
Q 043169 159 KLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKS-ANPQPSIVWASSSS---VYGLNENVPFSEADR 234 (421)
Q Consensus 159 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~-~~~~~riV~~SS~~---v~g~~~~~~~~e~~~ 234 (421)
+.++++ |+||-.||.... ...+..+.++.|..-...+.+.+++ ++....||.+|.-. .|-. +.....
T Consensus 172 e~~kda--DiVVitAG~prk--pG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~-----~k~sg~ 242 (444)
T PLN00112 172 EVFQDA--EWALLIGAKPRG--PGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC-----LKNAPN 242 (444)
T ss_pred HHhCcC--CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH-----HHHcCC
Confidence 446666 999999997432 2234567899999999999999998 57665777777521 0100 000000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
+ +....=+.+.+..-++-..++++.|+....|+-.+|+|...+
T Consensus 243 ~-~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd 285 (444)
T PLN00112 243 I-PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST 285 (444)
T ss_pred C-CcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC
Confidence 1 112222344555566667777778998888888888987554
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0013 Score=61.65 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=100.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|.|+|+ |+||+.++-.|+.++ .+++++++..+..+...-...........-..+.+| .+ .+.+++. |+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~----y~~~~~a--Di 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD----YEDLKGA--DI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC----hhhhcCC--CE
Confidence 57999999 999999999998876 489999997544433222211111111111222222 22 3345666 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc---cccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS---SVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~---~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
|+-.||...-+ -.+..+.++.|..-...+.+...+.+....|+.+|-- .+|-...... .+ .....-+.+
T Consensus 73 VvitAG~prKp--GmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~k~sg-----~p-~~rvig~gt 144 (313)
T COG0039 73 VVITAGVPRKP--GMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSG-----FP-KNRVIGSGT 144 (313)
T ss_pred EEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHHHhcC-----CC-ccceecccc
Confidence 99999974322 2344678899999999999999998876455555541 1111000000 11 112233456
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccc
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTV 272 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v 272 (421)
.+..-++-..+++.+++....++-..+
T Consensus 145 ~LDsaR~~~~lae~~~v~~~~V~~~Vi 171 (313)
T COG0039 145 VLDSARFRTFLAEKLGVSPKDVHAYVI 171 (313)
T ss_pred hHHHHHHHHHHHHHhCCChhHceeeEe
Confidence 677777777788888888777775444
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0017 Score=61.38 Aligned_cols=167 Identities=20% Similarity=0.134 Sum_probs=105.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|+|.|+|++|.+|++++..|+.+| .+++++|++ ..+...-. ..... ....+.... ..+++.+.++++ |+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alD--L~~~~-~~~~i~~~~--~~~~~y~~~~da--Di 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAAD--LSHIN-TPAKVTGYL--GPEELKKALKGA--DV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehH--hHhCC-CcceEEEec--CCCchHHhcCCC--CE
Confidence 589999999999999999999888 479999986 22221111 11111 112222110 112244567777 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc-------ccCCCCCCCCCCCCCCCCCCCh
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS-------VYGLNENVPFSEADRTDQPASL 241 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~-------v~g~~~~~~~~e~~~~~~~~~~ 241 (421)
||-+||.... ...+....++.|..-...+.+.+++.+....+|.+|--. .|.... .. ..++...
T Consensus 72 vvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~-----~s--~~p~~rv 142 (310)
T cd01337 72 VVIPAGVPRK--PGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKK-----AG--VYDPKRL 142 (310)
T ss_pred EEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHH-----hc--CCCHHHE
Confidence 9999997432 223456789999999999999999988776777777632 111000 00 0011122
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 043169 242 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPW 276 (421)
Q Consensus 242 Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~ 276 (421)
.+.+-+...++...+++..|+...-|+ +.|+|..
T Consensus 143 iG~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 143 FGVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred EeeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 333335556677777777888888887 8889976
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0019 Score=53.33 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
++++++|+|.|+ |++|+.++..|.+.|.+ |+++.|+.++. .... .......+.++.. .+ +.+.+.++
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra----~~l~-~~~~~~~~~~~~~--~~---~~~~~~~~- 76 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERA----EALA-EEFGGVNIEAIPL--ED---LEEALQEA- 76 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHH----HHHH-HHHTGCSEEEEEG--GG---HCHHHHTE-
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHH----HHHH-HHcCccccceeeH--HH---HHHHHhhC-
Confidence 478999999997 99999999999999986 99999954321 1111 1222334444433 33 33556666
Q ss_pred CcEEEEccccc
Q 043169 166 FTHVMHLAAQA 176 (421)
Q Consensus 166 ~d~vi~~Ag~~ 176 (421)
|+|||+.+..
T Consensus 77 -DivI~aT~~~ 86 (135)
T PF01488_consen 77 -DIVINATPSG 86 (135)
T ss_dssp -SEEEE-SSTT
T ss_pred -CeEEEecCCC
Confidence 9999997753
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0048 Score=55.73 Aligned_cols=74 Identities=27% Similarity=0.419 Sum_probs=57.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~v 169 (421)
|+++|.|+ |-+|..+|+.|.++|++|++++++.+.. ............+.+|-+|++.++++ +.++ |++
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~-------~~~~~~~~~~~~v~gd~t~~~~L~~agi~~a--D~v 70 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERV-------EEFLADELDTHVVIGDATDEDVLEEAGIDDA--DAV 70 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHH-------HHHhhhhcceEEEEecCCCHHHHHhcCCCcC--CEE
Confidence 67889997 9999999999999999999999854311 11111236788999999999999998 5666 998
Q ss_pred EEccc
Q 043169 170 MHLAA 174 (421)
Q Consensus 170 i~~Ag 174 (421)
|-.-|
T Consensus 71 va~t~ 75 (225)
T COG0569 71 VAATG 75 (225)
T ss_pred EEeeC
Confidence 87654
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0013 Score=61.04 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=57.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
...++|-||+||.|.-++++|+.+|.+-.+..|+..+. ....... .++.... ++-+++.+++.+... ++|
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl----~~l~~~L--G~~~~~~--p~~~p~~~~~~~~~~--~VV 75 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKL----DALRASL--GPEAAVF--PLGVPAALEAMASRT--QVV 75 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHH----HHHHHhc--Ccccccc--CCCCHHHHHHHHhcc--eEE
Confidence 35789999999999999999999999888888855322 2222221 2233333 344488999999888 999
Q ss_pred EEcccccC
Q 043169 170 MHLAAQAG 177 (421)
Q Consensus 170 i~~Ag~~~ 177 (421)
+||+|+..
T Consensus 76 lncvGPyt 83 (382)
T COG3268 76 LNCVGPYT 83 (382)
T ss_pred Eecccccc
Confidence 99999853
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0054 Score=59.06 Aligned_cols=168 Identities=11% Similarity=0.124 Sum_probs=100.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|.|+|+ |.||+.++..|+.+|. +++++|.+.+..+...-.............+... .|.+ .++++ |+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~--~dy~----~~~da--Di 108 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAS--TDYA----VTAGS--DL 108 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeC--CCHH----HhCCC--CE
Confidence 69999996 9999999999998874 7999999766544333222221111112222211 2322 36666 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChHHH-
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLYAA- 244 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y~~- 244 (421)
||-+||....+ ..+..+.+..|..-...+.+.+++++....+|.+|--. .|-. ..... .++....+.
T Consensus 109 VVitAG~~~k~--g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~-----~k~sg--~p~~rviG~g 179 (350)
T PLN02602 109 CIVTAGARQIP--GESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA-----WKLSG--FPANRVIGSG 179 (350)
T ss_pred EEECCCCCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH-----HHHhC--CCHHHEEeec
Confidence 99999975321 23445788889998999999999888776777777421 1100 00000 011111222
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWG 277 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~ 277 (421)
+-+...++...+++..|+...-|+.. |+|...
T Consensus 180 t~LDs~R~r~~lA~~l~v~~~~V~~~-ViGeHG 211 (350)
T PLN02602 180 TNLDSSRFRFLIADHLDVNAQDVQAY-IVGEHG 211 (350)
T ss_pred chHHHHHHHHHHHHHhCCCccceeee-EEecCC
Confidence 12233345555666678888877765 667644
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0044 Score=58.69 Aligned_cols=168 Identities=16% Similarity=0.156 Sum_probs=104.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHh-hc-CCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKAL-LN-NHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~-~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+|.|.|+ |.||+.+|..|+.+|. +++++|.+.+..+...-...... .. ...+.+... |. +.++++ |
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~y----~~~~~a--D 70 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---DY----DDCADA--D 70 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---CH----HHhCCC--C
Confidence 4789998 9999999999999884 79999987665544332222211 11 123444433 32 446666 9
Q ss_pred EEEEcccccCchhhccC-CchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChHH
Q 043169 168 HVMHLAAQAGVRYAMQN-PHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~-~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
+||-.||....+ .+.. ..+.+..|..-...+.+.+++++....+|.+|--. .|-... .... ++....+
T Consensus 71 ivvitaG~~~kp-g~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k-----~sg~--p~~rviG 142 (307)
T cd05290 71 IIVITAGPSIDP-GNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAAT-----EFDY--PANKVIG 142 (307)
T ss_pred EEEECCCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHH-----HhCc--Chhheec
Confidence 999999974321 1111 36788999999999999999998765666555421 110000 0000 1122223
Q ss_pred H-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 244 A-TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 244 ~-sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
. +-+...++-..+++..|+....|+-. |+|...+
T Consensus 143 ~gt~LDs~R~~~~la~~l~v~~~~V~~~-ViGeHGd 177 (307)
T cd05290 143 TGTMLDTARLRRIVADKYGVDPKNVTGY-VLGEHGS 177 (307)
T ss_pred ccchHHHHHHHHHHHHHhCCCcccEEEE-EEecCCC
Confidence 3 44556666777777788888888765 8887543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0038 Score=59.62 Aligned_cols=173 Identities=13% Similarity=0.087 Sum_probs=105.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCC--CChhHHHHHHHh-hcCCceEEEEcccCCHHHHH
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-------GVVGLDNFNNY--YDPSLKKARKAL-LNNHGVFVIEGDINDAKLLA 158 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~ 158 (421)
+.++|.|+|++|.+|+.++..|+..|. +++++|++.+. .+...-...... ....++.+.. ...
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-------~~y 75 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITD-------DPN 75 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEec-------ChH
Confidence 456899999999999999999998763 69999985432 222221111111 0111232221 123
Q ss_pred HHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEcccc---ccCCCCCCCCCCCCC
Q 043169 159 KLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSS---VYGLNENVPFSEADR 234 (421)
Q Consensus 159 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~---v~g~~~~~~~~e~~~ 234 (421)
+.++++ |+||-+||.... ...+..+.+..|..-.+.+.+.++++. ....+|.+|.-. .|-.. +..+
T Consensus 76 ~~~~da--DiVVitaG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~------k~s~ 145 (326)
T PRK05442 76 VAFKDA--DVALLVGARPRG--PGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAM------KNAP 145 (326)
T ss_pred HHhCCC--CEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHH------HHcC
Confidence 456666 999999997432 224566789999999999999998855 454677666411 11000 0000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
-.++....+.+-+..-++-..+++..++....|+--.|+|....
T Consensus 146 g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~ 189 (326)
T PRK05442 146 DLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA 189 (326)
T ss_pred CCCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC
Confidence 01122233445566667777777778888888876677886543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0051 Score=55.03 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC---CCCC----------hhHHH----HHHHhhcCCceEEEEc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN---NYYD----------PSLKK----ARKALLNNHGVFVIEG 149 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~---~~~~----------~~~~~----~~~~~~~~~~v~~~~~ 149 (421)
++..+|+|.|+ |++|+++++.|++.|. +++++|.+. +... ..+.+ ........-.++.+..
T Consensus 26 L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 26 LKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred HhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 67789999996 9999999999999996 588888862 1110 00000 1111122334555555
Q ss_pred ccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhc-CCCCeEEEEccccccC
Q 043169 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA-NPQPSIVWASSSSVYG 222 (421)
Q Consensus 150 Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~-~~~~riV~~SS~~v~g 222 (421)
.+++ +.+.++++++ |+||.+.- |...-..+.+.|.+. +. .+|+.+....|+
T Consensus 105 ~i~~-~~~~~~~~~~--DvVI~a~D-----------------~~~~r~~l~~~~~~~~~~--p~I~~~~~~~~~ 156 (212)
T PRK08644 105 KIDE-DNIEELFKDC--DIVVEAFD-----------------NAETKAMLVETVLEHPGK--KLVAASGMAGYG 156 (212)
T ss_pred ecCH-HHHHHHHcCC--CEEEECCC-----------------CHHHHHHHHHHHHHhCCC--CEEEeehhhccC
Confidence 5654 4566777766 99998742 223334566777777 64 678776655554
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.004 Score=56.53 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------Chh-----HHHH----HHHhhcCCceEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY----------DPS-----LKKA----RKALLNNHGVFVI 147 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----------~~~-----~~~~----~~~~~~~~~v~~~ 147 (421)
+++.+|+|.|+ |++|+++++.|+..|. +++++|.+.-.. +.. +... .....+.-.+..+
T Consensus 25 L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~ 103 (231)
T PRK08328 25 LKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF 103 (231)
T ss_pred HhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 67789999997 9999999999999995 677777543110 000 0000 1111223344445
Q ss_pred EcccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 148 ~~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
...+ +.+.+.++++++ |+||.+..- ...-..+-++|++.+. .+|+.++.+.+|
T Consensus 104 ~~~~-~~~~~~~~l~~~--D~Vid~~d~-----------------~~~r~~l~~~~~~~~i--p~i~g~~~g~~G 156 (231)
T PRK08328 104 VGRL-SEENIDEVLKGV--DVIVDCLDN-----------------FETRYLLDDYAHKKGI--PLVHGAVEGTYG 156 (231)
T ss_pred eccC-CHHHHHHHHhcC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEeeccCEE
Confidence 5555 345566777766 888877531 2222345567888885 688888776665
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0092 Score=55.65 Aligned_cols=167 Identities=11% Similarity=0.049 Sum_probs=97.0
Q ss_pred CCEEEEEcC-CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 90 GMSVLVTGA-AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 90 ~k~vlITG~-sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
...|+|.|. +-=+++.+|..|-++|+-|++.+.+.+ +....+......+..+..|..++.++...+..+
T Consensus 3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~e------d~~~ve~e~~~dI~~L~ld~~~~~~~~~~l~~f~~~L 76 (299)
T PF08643_consen 3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAE------DEKYVESEDRPDIRPLWLDDSDPSSIHASLSRFASLL 76 (299)
T ss_pred eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHH------HHHHHHhccCCCCCCcccCCCCCcchHHHHHHHHHHh
Confidence 357889995 789999999999999999999997442 111112222456888888886665544444332
Q ss_pred -C--------CcEEEEcccccCc-----------hhhccCCchhhhhhHHHHH----HHHHHHHhcC-CCCeEEEEcccc
Q 043169 165 -A--------FTHVMHLAAQAGV-----------RYAMQNPHSYVHSNIAGLV----TLLEACKSAN-PQPSIVWASSSS 219 (421)
Q Consensus 165 -~--------~d~vi~~Ag~~~~-----------~~~~~~~~~~~~~N~~g~~----~l~~~~~~~~-~~~riV~~SS~~ 219 (421)
+ ..+..++.|+.-. ....+.+..+++.|+.-.. .++..++... .+.++|.+.-.-
T Consensus 77 ~~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~Psi 156 (299)
T PF08643_consen 77 SRPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFNPSI 156 (299)
T ss_pred cCCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeCch
Confidence 1 1223344443211 1122334456777766644 4444445411 122555554322
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecccc
Q 043169 220 VYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVY 273 (421)
Q Consensus 220 v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~ 273 (421)
... ...+...+-.....+.+.+...++++. +++|+.++.|++-
T Consensus 157 ~ss-----------l~~PfhspE~~~~~al~~~~~~LrrEl~~~~I~V~~i~LG~l~ 202 (299)
T PF08643_consen 157 SSS-----------LNPPFHSPESIVSSALSSFFTSLRRELRPHNIDVTQIKLGNLD 202 (299)
T ss_pred hhc-----------cCCCccCHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeeeec
Confidence 211 011223455566667777777777764 5999999999864
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0032 Score=59.77 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=100.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|.|+|+ |.||+.++..|+..| .+++++|++.+..+.................+... .|++ .++++ |+
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~dy~----~~~~a--di 74 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KDYS----VTANS--KV 74 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CCHH----HhCCC--CE
Confidence 58999996 999999999999887 47999998765443332222111100111122221 2333 25666 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChHHH-
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLYAA- 244 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y~~- 244 (421)
||-+||.... ...+....+..|..-.+.+.+.+++.+....+|.+|.-. .|... ..... ++....+.
T Consensus 75 vvitaG~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~-----k~sg~--p~~~viG~g 145 (312)
T cd05293 75 VIVTAGARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAW-----KLSGL--PKHRVIGSG 145 (312)
T ss_pred EEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHH-----HHhCC--CHHHEEecC
Confidence 9999997532 123445788999999999999999998776777777521 01000 00000 11222333
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
+-+...++-..+++..|+...-++. .|+|....
T Consensus 146 t~Ld~~R~~~~la~~l~v~~~~v~~-~v~GeHG~ 178 (312)
T cd05293 146 CNLDSARFRYLIAERLGVAPSSVHG-WIIGEHGD 178 (312)
T ss_pred chHHHHHHHHHHHHHhCCChhhEEE-EEeecCCC
Confidence 2333445556666667887777765 45776543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0065 Score=55.43 Aligned_cols=112 Identities=21% Similarity=0.177 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCC----------hh----H----HHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYD----------PS----L----KKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----------~~----~----~~~~~~~~~~~~v~~~~ 148 (421)
+++.+|+|.|+ |++|+.+++.|++.|. +++++|.+.-... .. + .+...+..+.-+++.+.
T Consensus 22 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 22 LKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 57789999997 9999999999999995 6777776442110 00 0 01111112223344444
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
..++ .+.+.++++++ |+||.+.. |......+-++|.+.++ .+|+.++...+|
T Consensus 101 ~~i~-~~~~~~~~~~~--DlVvd~~D-----------------~~~~r~~ln~~~~~~~i--p~v~~~~~g~~G 152 (240)
T TIGR02355 101 AKLD-DAELAALIAEH--DIVVDCTD-----------------NVEVRNQLNRQCFAAKV--PLVSGAAIRMEG 152 (240)
T ss_pred ccCC-HHHHHHHhhcC--CEEEEcCC-----------------CHHHHHHHHHHHHHcCC--CEEEEEecccEe
Confidence 4443 34566777766 88888753 22223456678888885 688776655444
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0017 Score=63.34 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=64.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~ 166 (421)
+.|+|.|.||||++|.++++.|.++ +.+|..+.+..+..+.... ........|+.+.+.++.. ++++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~---------~~~~l~~~~~~~~~~~~~~~~~~~-- 105 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS---------VFPHLITQDLPNLVAVKDADFSDV-- 105 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh---------hCccccCccccceecCCHHHhcCC--
Confidence 5579999999999999999999999 6899998874332211100 0111222344333333322 4555
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
|+||.+.+. ..+..++..+ +.+. +||-.|+..-+.
T Consensus 106 DvVf~Alp~------------------~~s~~i~~~~-~~g~--~VIDlSs~fRl~ 140 (381)
T PLN02968 106 DAVFCCLPH------------------GTTQEIIKAL-PKDL--KIVDLSADFRLR 140 (381)
T ss_pred CEEEEcCCH------------------HHHHHHHHHH-hCCC--EEEEcCchhccC
Confidence 999987652 1355666665 3452 899999977654
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0044 Score=58.86 Aligned_cols=167 Identities=16% Similarity=0.164 Sum_probs=97.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|+|.|.|+ |.+|..++..|+.+| .+|++++++.+..+.................... .|.+ .++++ |+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d~~----~l~~a--Di 70 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GDYA----DCKGA--DV 70 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CCHH----HhCCC--CE
Confidence 57999998 999999999999999 5899999976544322211111111111222222 2332 36666 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChHHH-
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLYAA- 244 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y~~- 244 (421)
||.+++.... ...+....+..|..-...+.+.+++.+....++.++.-. .|-... .... ++....+.
T Consensus 71 Viita~~~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~-----~sg~--p~~~viG~g 141 (308)
T cd05292 71 VVITAGANQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYK-----LSGL--PPNRVIGSG 141 (308)
T ss_pred EEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHH-----HHCc--CHHHeeccc
Confidence 9999996421 123345677888888888999888887665666665411 000000 0000 11112222
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWG 277 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~ 277 (421)
+-+...++-..+++..+++...|+ +.|+|...
T Consensus 142 t~LDs~R~~~~la~~~~v~~~~v~-~~viGeHg 173 (308)
T cd05292 142 TVLDTARFRYLLGEHLGVDPRSVH-AYIIGEHG 173 (308)
T ss_pred chhhHHHHHHHHHHHhCCCcccee-ceeeccCC
Confidence 223334555566666788888886 55778654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0044 Score=59.20 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCce-EEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGV-FVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+.++|.|.|| |.+|+.++..|+..| .+|+++|++.+..+...-. ........+. ..+.+ -+|. + .++++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lD-l~~~~~~~~~~~~i~~-~~d~---~-~l~~A-- 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALD-LKHFSTLVGSNINILG-TNNY---E-DIKDS-- 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHH-HhhhccccCCCeEEEe-CCCH---H-HhCCC--
Confidence 5678999997 999999999999998 7899999977654422211 1111111111 11111 1232 3 45666
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||.+||.... ...+....+..|..-...+.+.+.+.+++..+|++|.
T Consensus 75 DiVVitag~~~~--~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 75 DVVVITAGVQRK--EEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999987432 1223456777888878888888888887656777765
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0052 Score=55.72 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC--------------CChhH----HHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNY--------------YDPSL----KKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~--------------~~~~~----~~~~~~~~~~~~v~~~~ 148 (421)
+++++|+|.|+ |++|+++++.|+..|. +++++|.+.-. ....+ .+...+..+..++..+.
T Consensus 19 L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 19 LKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 67789999996 9999999999999996 66666553310 00001 11111112234566666
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
.+++ .+.+.++++++ |+||.+... ...-..+-++|.+.+. .+|+.+..+.+|
T Consensus 98 ~~i~-~~~~~~~~~~~--DvVi~~~d~-----------------~~~r~~l~~~~~~~~i--p~i~~g~~g~~g 149 (228)
T cd00757 98 ERLD-AENAEELIAGY--DLVLDCTDN-----------------FATRYLINDACVKLGK--PLVSGAVLGFEG 149 (228)
T ss_pred ceeC-HHHHHHHHhCC--CEEEEcCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeccCEE
Confidence 6663 45677777776 999988642 1223457778888875 678776655443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=65.15 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=57.4
Q ss_pred cCCCCCEEEEEcC----------------CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEc
Q 043169 86 HRSGGMSVLVTGA----------------AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149 (421)
Q Consensus 86 ~~~~~k~vlITG~----------------sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~ 149 (421)
.+++||+||||+| ||-.|.+||+++..+|++|+++.-..+ .....+++++.
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~------------~~~p~~v~~i~- 318 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD------------LADPQGVKVIH- 318 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC------------CCCCCCceEEE-
Confidence 4589999999997 588999999999999999999874221 11234566654
Q ss_pred ccCCHHHHHHHhhc-cCCcEEEEcccccCc
Q 043169 150 DINDAKLLAKLFDA-VAFTHVMHLAAQAGV 178 (421)
Q Consensus 150 Dl~d~~~~~~~~~~-~~~d~vi~~Ag~~~~ 178 (421)
+.+.+++.+++.+ .+.|++|++|++...
T Consensus 319 -V~ta~eM~~av~~~~~~Di~I~aAAVaDy 347 (475)
T PRK13982 319 -VESARQMLAAVEAALPADIAIFAAAVADW 347 (475)
T ss_pred -ecCHHHHHHHHHhhCCCCEEEEeccccce
Confidence 4455555555533 346999999999765
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0032 Score=68.41 Aligned_cols=77 Identities=21% Similarity=0.196 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-Cc-------------EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG-DG-------------VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA 154 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~ 154 (421)
.+|+|+|.|+ |.||+.+++.|++.. ++ |.+.+++.+. ........+++..+..|++|.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~-------a~~la~~~~~~~~v~lDv~D~ 639 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKD-------AKETVEGIENAEAVQLDVSDS 639 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHH-------HHHHHHhcCCCceEEeecCCH
Confidence 4779999997 999999999998763 34 7777764321 111111123678899999999
Q ss_pred HHHHHHhhccCCcEEEEcccc
Q 043169 155 KLLAKLFDAVAFTHVMHLAAQ 175 (421)
Q Consensus 155 ~~~~~~~~~~~~d~vi~~Ag~ 175 (421)
+++.++++++ |+||++...
T Consensus 640 e~L~~~v~~~--DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVSQV--DVVISLLPA 658 (1042)
T ss_pred HHHHHhhcCC--CEEEECCCc
Confidence 9999998876 999999864
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0024 Score=60.44 Aligned_cols=168 Identities=17% Similarity=0.092 Sum_probs=99.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|.|+|++|.||++++..|+.++. +++++|++. ..... ....+.. ....+.... +.++..+.++++ |+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a--~DL~~~~-~~~~i~~~~--~~~~~~~~~~da--Div 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVA--ADLSHIP-TAASVKGFS--GEEGLENALKGA--DVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEE--chhhcCC-cCceEEEec--CCCchHHHcCCC--CEE
Confidence 478999999999999999998874 799999865 11111 1111111 112222101 112244567777 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc-c------cCCCCCCCCCCCCCCCCCCChH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS-V------YGLNENVPFSEADRTDQPASLY 242 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~-v------~g~~~~~~~~e~~~~~~~~~~Y 242 (421)
|-+||.... ...+....+..|..-...+.+.+++.++...||.+|--. + |-... .... ++....
T Consensus 72 vitaG~~~~--~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~-----~sg~--p~~rVi 142 (312)
T TIGR01772 72 VIPAGVPRK--PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKK-----KGVY--DPNKLF 142 (312)
T ss_pred EEeCCCCCC--CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHH-----hcCC--ChHHEE
Confidence 999997432 224456788999999999999999888776777777532 1 00000 0000 111122
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
+.+-+..-++-..+++..|+....+ -+.|+|...+
T Consensus 143 G~g~LDsaR~r~~la~~l~v~~~~v-~~~ViGeHg~ 177 (312)
T TIGR01772 143 GVTTLDIVRANTFVAELKGKDPMEV-NVPVIGGHSG 177 (312)
T ss_pred eeecchHHHHHHHHHHHhCCCHHHe-EEEEEEecCC
Confidence 2222455566666777777776665 4567776543
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.012 Score=52.01 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCC---CCCCChh------H----HH----HHHHhhcCCceEEEEc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNF---NNYYDPS------L----KK----ARKALLNNHGVFVIEG 149 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~---~~~~~~~------~----~~----~~~~~~~~~~v~~~~~ 149 (421)
++.++|+|.|+ |++|+.++..|++.|. +++++|.+ .+..... . .. ......+...+..+..
T Consensus 19 L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 19 LEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 67789999997 9999999999999998 69999987 2222110 1 00 1111112234555666
Q ss_pred ccCCHHHHHHHhhccCCcEEEEc
Q 043169 150 DINDAKLLAKLFDAVAFTHVMHL 172 (421)
Q Consensus 150 Dl~d~~~~~~~~~~~~~d~vi~~ 172 (421)
+++ .+.+.++++++ |+||.+
T Consensus 98 ~i~-~~~~~~~~~~~--DlVi~a 117 (200)
T TIGR02354 98 KIT-EENIDKFFKDA--DIVCEA 117 (200)
T ss_pred eCC-HhHHHHHhcCC--CEEEEC
Confidence 665 45677777776 999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.009 Score=54.75 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=70.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCCh----------h----H----HHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDP----------S----L----KKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~----------~----~----~~~~~~~~~~~~v~~~~ 148 (421)
+++++|+|.|+ |++|+++++.|+..|. +++++|.+.-.... . + .+...+..+..+++.+.
T Consensus 30 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 30 LKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred hcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 67889999998 9999999999999995 67777664311100 0 0 01111112234455566
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
..++ .+.+.++++++ |+||.+.. |...-..+-++|.+.+. .+|+.++...+|
T Consensus 109 ~~i~-~~~~~~~~~~~--DiVi~~~D-----------------~~~~r~~ln~~~~~~~i--p~v~~~~~g~~G 160 (245)
T PRK05690 109 ARLD-DDELAALIAGH--DLVLDCTD-----------------NVATRNQLNRACFAAKK--PLVSGAAIRMEG 160 (245)
T ss_pred ccCC-HHHHHHHHhcC--CEEEecCC-----------------CHHHHHHHHHHHHHhCC--EEEEeeeccCCc
Confidence 5554 44566777776 99998763 22223456677888875 677766544333
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0025 Score=59.17 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=78.0
Q ss_pred EEEEcCCChhHHHHHHHHHHCC----CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 93 VLVTGAAGFVGTHVSLALKKRG----DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|.|.|++|.+|..++..|+..| .+|+++|++.++.+.................+. .+ ++..+.++++ |+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~---~~--~d~~~~~~~a--Di 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS---IT--DDPYEAFKDA--DV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE---EC--CchHHHhCCC--CE
Confidence 4689999999999999999998 789999998766655443322221111011221 11 2245667777 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
||..+|....+ ..+.......|+.-...+.+.+++.+....+|.+|-
T Consensus 74 Vv~t~~~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN 120 (263)
T cd00650 74 VIITAGVGRKP--GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120 (263)
T ss_pred EEECCCCCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999874321 123345677888888999999988887657776653
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.003 Score=63.46 Aligned_cols=77 Identities=26% Similarity=0.240 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+++|+|+|||+++ +|.++++.|+++|++|++.++......+.... ....++.+..++.. ..+ +.. .+|
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~-----l~~~g~~~~~~~~~--~~~---~~~-~~d 70 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQE-----LLEEGIKVICGSHP--LEL---LDE-DFD 70 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHH-----HHhcCCEEEeCCCC--HHH---hcC-cCC
Confidence 5789999999965 99999999999999999998755322222111 12235555443322 111 222 259
Q ss_pred EEEEccccc
Q 043169 168 HVMHLAAQA 176 (421)
Q Consensus 168 ~vi~~Ag~~ 176 (421)
+||+++|+.
T Consensus 71 ~vV~s~gi~ 79 (447)
T PRK02472 71 LMVKNPGIP 79 (447)
T ss_pred EEEECCCCC
Confidence 999999975
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.01 Score=49.56 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=65.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC--------------ChhHH----HHHHHhhcCCceEEEEcccC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY--------------DPSLK----KARKALLNNHGVFVIEGDIN 152 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~--------------~~~~~----~~~~~~~~~~~v~~~~~Dl~ 152 (421)
+|+|.|+ |++|+++++.|++.|. ++.++|.+.-.. ...+. +......+.-.++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 4789997 9999999999999997 688887652110 00111 11111112334455555555
Q ss_pred CHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccccc
Q 043169 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVY 221 (421)
Q Consensus 153 d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~ 221 (421)
+.. ..+.++.+ |+||.+... ......+.++|++.+. .+|..++...+
T Consensus 80 ~~~-~~~~~~~~--diVi~~~d~-----------------~~~~~~l~~~~~~~~i--~~i~~~~~g~~ 126 (143)
T cd01483 80 EDN-LDDFLDGV--DLVIDAIDN-----------------IAVRRALNRACKELGI--PVIDAGGLGLG 126 (143)
T ss_pred hhh-HHHHhcCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEcCCCcE
Confidence 433 35556655 999987642 3334567788888885 67777776533
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0073 Score=53.43 Aligned_cols=113 Identities=17% Similarity=0.209 Sum_probs=70.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC---------C---hhH--------HHHHHHhhcCCceEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY---------D---PSL--------KKARKALLNNHGVFV 146 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~---------~---~~~--------~~~~~~~~~~~~v~~ 146 (421)
+++.+|+|.|+ |++|.++++.|+..|. +++++|.+.-.. . ... .+...+..+..+++.
T Consensus 17 L~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 17 LRSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred HhhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 56789999997 5599999999999996 588887653110 0 000 001111223344555
Q ss_pred EEcccCC-HHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 147 IEGDIND-AKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 147 ~~~Dl~d-~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
+..++.+ .+...++++++ |+||.+-. |......+-+.|++.+. .+|+.++.+.||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~--dvVi~~~d-----------------~~~~~~~ln~~c~~~~i--p~i~~~~~G~~G 151 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQKF--TLVIATEE-----------------NYERTAKVNDVCRKHHI--PFISCATYGLIG 151 (198)
T ss_pred EecccccchhhHHHHHhCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEEeecCEE
Confidence 5555542 44566677766 88886632 22233456688888886 788888877665
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0084 Score=60.28 Aligned_cols=121 Identities=15% Similarity=0.042 Sum_probs=71.5
Q ss_pred EEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEEccc
Q 043169 95 VTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAA 174 (421)
Q Consensus 95 ITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~~Ag 174 (421)
|+||+|++|.++++.|...|++|+...+...+. ......++.-+-.|.+..+...++
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~---------~~~~~~~~~~~~~d~~~~~~~~~l-------------- 99 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLTW---------AAGWGDRFGALVFDATGITDPADL-------------- 99 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecCcccccc---------ccCcCCcccEEEEECCCCCCHHHH--------------
Confidence 888899999999999999999999876522200 000111222222232221111110
Q ss_pred ccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 043169 175 QAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAH 254 (421)
Q Consensus 175 ~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~ 254 (421)
... .......++...+. ++||+++|.... .....|+.+|.+.+.+++
T Consensus 100 --------------~~~-~~~~~~~l~~l~~~---griv~i~s~~~~---------------~~~~~~~~akaal~gl~r 146 (450)
T PRK08261 100 --------------KAL-YEFFHPVLRSLAPC---GRVVVLGRPPEA---------------AADPAAAAAQRALEGFTR 146 (450)
T ss_pred --------------HHH-HHHHHHHHHhccCC---CEEEEEcccccc---------------CCchHHHHHHHHHHHHHH
Confidence 000 01122223322222 399999987542 112359999999999999
Q ss_pred HHHHHh--CCcEEEEEecc
Q 043169 255 TYNHIY--GLSITGLRFFT 271 (421)
Q Consensus 255 ~~~~~~--gi~~~~vrp~~ 271 (421)
.++++. ++++..+.|+.
T Consensus 147 sla~E~~~gi~v~~i~~~~ 165 (450)
T PRK08261 147 SLGKELRRGATAQLVYVAP 165 (450)
T ss_pred HHHHHhhcCCEEEEEecCC
Confidence 998874 78998898764
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.006 Score=49.34 Aligned_cols=98 Identities=17% Similarity=0.113 Sum_probs=55.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCC-CCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNN-YYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|.|.|++|++|+.+++.|+++- .+++.+..+.. ...... ...........+.+.. .+.+. +.++ |+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~---~~~~~----~~~~--Dvv 70 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS-EVFPHPKGFEDLSVED---ADPEE----LSDV--DVV 70 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH-HTTGGGTTTEEEBEEE---TSGHH----HTTE--SEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee-hhccccccccceeEee---cchhH----hhcC--CEE
Confidence 58999999999999999999964 56555544333 222221 1111110111222222 33333 2444 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
|.+.+. ..+..+.+.+.+.|. ++|=.|+..
T Consensus 71 f~a~~~------------------~~~~~~~~~~~~~g~--~ViD~s~~~ 100 (121)
T PF01118_consen 71 FLALPH------------------GASKELAPKLLKAGI--KVIDLSGDF 100 (121)
T ss_dssp EE-SCH------------------HHHHHHHHHHHHTTS--EEEESSSTT
T ss_pred EecCch------------------hHHHHHHHHHhhCCc--EEEeCCHHH
Confidence 998752 124556666777775 777777654
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0092 Score=56.97 Aligned_cols=121 Identities=14% Similarity=0.087 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhH-HHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSL-KKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+.++|.|.|+ |.+|..++..|+..|. +|+++|++++...... ..............+.. .+|. +.++++
T Consensus 4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d~----~~l~~a- 75 (321)
T PTZ00082 4 IKRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNNY----EDIAGS- 75 (321)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCCH----HHhCCC-
Confidence 45579999995 9999999999999995 8999999776542211 11111111111222321 1233 245667
Q ss_pred CcEEEEcccccCchhh---ccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 166 FTHVMHLAAQAGVRYA---MQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||.+||....+.. +-+....+..|+.-...+.+.+.+.++...+|.+|-
T Consensus 76 -DiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 76 -DVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred -CEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999997532111 003345677788888888888888886556777775
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0059 Score=59.78 Aligned_cols=110 Identities=20% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC-------------------CCCChhHHHHHHHhhcCCceEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN-------------------NYYDPSLKKARKALLNNHGVFVI 147 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~v~~~ 147 (421)
+++++|+|.|+ |++|+++++.|++.|. +++++|++. .+.+...+. ..+..+...+..+
T Consensus 133 l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~-l~~~np~v~v~~~ 210 (376)
T PRK08762 133 LLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQR-LAALNPDVQVEAV 210 (376)
T ss_pred HhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHH-HHHHCCCCEEEEE
Confidence 67789999986 9999999999999997 688888862 111111111 1111122334455
Q ss_pred EcccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccccc
Q 043169 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVY 221 (421)
Q Consensus 148 ~~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~ 221 (421)
...+.+ +.+.++++++ |+||++..- ...-..+-++|.+.++ .+|+.+..+.+
T Consensus 211 ~~~~~~-~~~~~~~~~~--D~Vv~~~d~-----------------~~~r~~ln~~~~~~~i--p~i~~~~~g~~ 262 (376)
T PRK08762 211 QERVTS-DNVEALLQDV--DVVVDGADN-----------------FPTRYLLNDACVKLGK--PLVYGAVFRFE 262 (376)
T ss_pred eccCCh-HHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeccCE
Confidence 544543 5567777776 999998632 1222346678888885 68887765433
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0088 Score=56.88 Aligned_cols=168 Identities=15% Similarity=0.107 Sum_probs=93.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALL-NNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|+|.|.|+ |.+|..++..|+..|. +|+++|++++.............. ......+. . -+|. +.++++ |+
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~-~~d~----~~~~~a--Di 73 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-G-TNDY----EDIAGS--DV 73 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-e-CCCH----HHHCCC--CE
Confidence 68999998 9999999999999875 999999966654222111111110 01111111 1 1232 235666 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChHHH-
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLYAA- 244 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y~~- 244 (421)
||.++|.... ...+....+.-|..-...+++.+.+......+|.+|... .|-... .. ..++....|.
T Consensus 74 Vii~~~~p~~--~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~-----~s--~~~~~~viG~g 144 (307)
T PRK06223 74 VVITAGVPRK--PGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALK-----ES--GFPKNRVIGMA 144 (307)
T ss_pred EEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHH-----Hh--CCCcccEEEeC
Confidence 9999986421 112233556778888888888888777654577666421 110000 00 0011222222
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWG 277 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~ 277 (421)
+-+..-++-..+++..++...-++ +.|+|...
T Consensus 145 t~lds~r~~~~la~~l~v~~~~v~-~~viGehg 176 (307)
T PRK06223 145 GVLDSARFRTFIAEELNVSVKDVT-AFVLGGHG 176 (307)
T ss_pred CCcHHHHHHHHHHHHhCcChhhCc-ccEEcCCC
Confidence 223334555666666777766665 55667643
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0047 Score=59.42 Aligned_cols=94 Identities=20% Similarity=0.142 Sum_probs=59.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCc---EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDG---VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+++|+|.||||++|.++++.|.++||. +..+.+..+..+... . .+......|+.+. .++++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-------~--~g~~i~v~d~~~~-----~~~~v-- 64 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-------F--KGKELKVEDLTTF-----DFSGV-- 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-------e--CCceeEEeeCCHH-----HHcCC--
Confidence 468999999999999999999998875 477766443222210 1 1123344455432 23444
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
|+||.++|.. -+..+.+.+.+.|. .||=.||..
T Consensus 65 DvVf~A~g~g------------------~s~~~~~~~~~~G~--~VIDlS~~~ 97 (334)
T PRK14874 65 DIALFSAGGS------------------VSKKYAPKAAAAGA--VVIDNSSAF 97 (334)
T ss_pred CEEEECCChH------------------HHHHHHHHHHhCCC--EEEECCchh
Confidence 9999888642 13445555556664 677777754
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=57.38 Aligned_cols=112 Identities=19% Similarity=0.057 Sum_probs=70.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC--------------ChhH----HHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY--------------DPSL----KKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~--------------~~~~----~~~~~~~~~~~~v~~~~ 148 (421)
+++.+|+|.|+ |++|+++++.|+..|. +++++|.+.=.. ...+ .+...+..+.-+++.+.
T Consensus 26 L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 26 LFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 67789999997 9999999999999995 677777754100 0000 11111122334455555
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
..++. +...++++++ |+||.+.. |...-..+-++|.+.++ .+|+.++.+.+|
T Consensus 105 ~~i~~-~~~~~~~~~~--DvVvd~~d-----------------~~~~r~~~n~~c~~~~i--p~v~~~~~g~~g 156 (355)
T PRK05597 105 RRLTW-SNALDELRDA--DVILDGSD-----------------NFDTRHLASWAAARLGI--PHVWASILGFDA 156 (355)
T ss_pred eecCH-HHHHHHHhCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEEEecCeE
Confidence 66653 4556677776 99998863 22223346677888885 688877654443
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0088 Score=56.63 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=96.6
Q ss_pred EEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 93 VLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|.|.|+ |.+|..++..|+..| .+++++|++.+..+.................+... .| .+.++++ |+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~----~~~l~~a--DiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD----YADAADA--DIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC----HHHhCCC--CEEE
Confidence 367886 899999999999998 68999999776544333222211111112222221 22 2356666 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChHHH-HH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLYAA-TK 246 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y~~-sK 246 (421)
.+||.... ...+....+..|+.-.+.+.+.+++++....+|.+|.-. .|... .... .++...++. +-
T Consensus 72 itag~p~~--~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~-----~~sg--~~~~kviG~gt~ 142 (300)
T cd00300 72 ITAGAPRK--PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQ-----KLSG--LPKNRVIGSGTL 142 (300)
T ss_pred EcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHH-----HHhC--cCHHHEEecCCc
Confidence 99997432 123456778889999999999999988776777776421 00000 0000 011112222 12
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWG 277 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~ 277 (421)
+...++...+++..|++..-++. .|+|...
T Consensus 143 lDs~r~~~~la~~l~v~~~~v~~-~viGeHg 172 (300)
T cd00300 143 LDSARFRSLLAEKLDVDPQSVHA-YVLGEHG 172 (300)
T ss_pred HHHHHHHHHHHHHhCCCcccEEE-EEEeccC
Confidence 22344555556667777777765 4667643
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.016 Score=46.26 Aligned_cols=71 Identities=31% Similarity=0.374 Sum_probs=51.1
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEEc
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHL 172 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~~ 172 (421)
|+|.|+ |-+|..+++.|.+.+.+|++++++.+ ........++.++.+|.+|++.++++--+ +.+.||-+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~---------~~~~~~~~~~~~i~gd~~~~~~l~~a~i~-~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPE---------RVEELREEGVEVIYGDATDPEVLERAGIE-KADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHH---------HHHHHHHTTSEEEES-TTSHHHHHHTTGG-CESEEEEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcH---------HHHHHHhcccccccccchhhhHHhhcCcc-ccCEEEEc
Confidence 578887 78999999999998789999998432 12222335688999999999998886432 44777765
Q ss_pred cc
Q 043169 173 AA 174 (421)
Q Consensus 173 Ag 174 (421)
..
T Consensus 70 ~~ 71 (116)
T PF02254_consen 70 TD 71 (116)
T ss_dssp SS
T ss_pred cC
Confidence 43
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.003 Score=62.40 Aligned_cols=173 Identities=13% Similarity=0.076 Sum_probs=101.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC---CC----cEEEEeCC--CCCCChhHHHHHHHhhc-CCceEEEEcccCCHHHH
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR---GD----GVVGLDNF--NNYYDPSLKKARKALLN-NHGVFVIEGDINDAKLL 157 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~---g~----~V~~~~r~--~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~ 157 (421)
.+.-+|+||||+|.||.+|+-.+++- |. .+++++.. .+..+...-+....... ...+.+.. | +
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~-~--~---- 193 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT-D--L---- 193 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE-C--C----
Confidence 34568999999999999999999874 42 35556652 22222211111111101 12333332 1 2
Q ss_pred HHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC--CCeEEEEccccc----cCCCCCCCCCC
Q 043169 158 AKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP--QPSIVWASSSSV----YGLNENVPFSE 231 (421)
Q Consensus 158 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~riV~~SS~~v----~g~~~~~~~~e 231 (421)
.+.++++ |+||-.||.... ...+....++.|..-.....+.+.+.+. . +|+.+.|--+ |-. ...
T Consensus 194 ~ea~~da--DvvIitag~prk--~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~-~VlVv~tNPvD~~t~i~-----~k~ 263 (452)
T cd05295 194 DVAFKDA--HVIVLLDDFLIK--EGEDLEGCIRSRVAICQLYGPLIEKNAKEDV-KVIVAGRTFLNLKTSIL-----IKY 263 (452)
T ss_pred HHHhCCC--CEEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEeCCcHHHHHHHH-----HHH
Confidence 4567777 999999997432 2234567889999999999999988876 5 5555554111 000 000
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
.+-.++....+.+.+...++...++++.|++...|+-..|+|....
T Consensus 264 -apgiP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~ 309 (452)
T cd05295 264 -APSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG 309 (452)
T ss_pred -cCCCCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC
Confidence 0001122333444445455666677778999889988889886544
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.013 Score=50.58 Aligned_cols=108 Identities=20% Similarity=0.215 Sum_probs=65.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC---CCCC----------hhHHH----HHHHhhcCCceEEEEcccCC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN---NYYD----------PSLKK----ARKALLNNHGVFVIEGDIND 153 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~---~~~~----------~~~~~----~~~~~~~~~~v~~~~~Dl~d 153 (421)
+|+|.|+ |++|+++++.|++.|. +++++|.+. +... ..+.+ ...+..+..++..+...+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 4789996 9999999999999997 599998865 1111 00111 11111223445555555544
Q ss_pred HHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhc-CCCCeEEEEccccccC
Q 043169 154 AKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA-NPQPSIVWASSSSVYG 222 (421)
Q Consensus 154 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~-~~~~riV~~SS~~v~g 222 (421)
+.+.++++++ |+||.+.. |...-..+.+.+.+. +. .+|+.+....|+
T Consensus 80 -~~~~~~l~~~--DlVi~~~d-----------------~~~~r~~i~~~~~~~~~i--p~i~~~~~~~~~ 127 (174)
T cd01487 80 -NNLEGLFGDC--DIVVEAFD-----------------NAETKAMLAESLLGNKNK--PVVCASGMAGFG 127 (174)
T ss_pred -hhHHHHhcCC--CEEEECCC-----------------CHHHHHHHHHHHHHHCCC--CEEEEehhhccC
Confidence 5567777776 99998742 122223466666665 54 677665554444
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0017 Score=54.89 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.++++++|+|+ |.+|..+++.|.+.| ++|++++|+.++.+. .... .... .+..+..+.+ +.++++
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~----~~~~-~~~~---~~~~~~~~~~---~~~~~~-- 82 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKA----LAER-FGEL---GIAIAYLDLE---ELLAEA-- 82 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHH----HHHH-Hhhc---ccceeecchh---hccccC--
Confidence 46789999997 999999999999996 789999885432211 1111 1111 1222344433 335555
Q ss_pred cEEEEccccc
Q 043169 167 THVMHLAAQA 176 (421)
Q Consensus 167 d~vi~~Ag~~ 176 (421)
|+||++....
T Consensus 83 Dvvi~~~~~~ 92 (155)
T cd01065 83 DLIINTTPVG 92 (155)
T ss_pred CEEEeCcCCC
Confidence 9999998653
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=54.91 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=67.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------Ch----hH----HHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY----------DP----SL----KKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----------~~----~~----~~~~~~~~~~~~v~~~~ 148 (421)
+++.+|+|.|+ |++|+.+++.|+..|. ++.++|.+.=.. .. .+ ++...+..+..+++.+.
T Consensus 25 L~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 25 LRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred HhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 67789999997 9999999999999995 677777643110 00 00 11111112334455555
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
..++. +.+.++++++ |+||.+.-. + ++..-..+-++|.+.++ .+|+.|...
T Consensus 104 ~~l~~-~n~~~ll~~~--DlVvD~~D~---------~------~~~~r~~ln~~c~~~~i--P~V~~~~~g 154 (287)
T PRK08223 104 EGIGK-ENADAFLDGV--DVYVDGLDF---------F------EFDARRLVFAACQQRGI--PALTAAPLG 154 (287)
T ss_pred cccCc-cCHHHHHhCC--CEEEECCCC---------C------cHHHHHHHHHHHHHcCC--CEEEEeccC
Confidence 55553 4456677766 888865311 0 12334567778888885 678776543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.004 Score=62.66 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=56.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHH-hhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL-NNHGVFVIEGDINDAKLLAKL-FDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~ 168 (421)
|+|+|.|+ |.+|.++++.|.++|++|++++++.+. .... ...++.++.+|.++.+.+.++ ++++ |.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~---------~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a--~~ 68 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEER---------LRRLQDRLDVRTVVGNGSSPDVLREAGAEDA--DL 68 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHH---------HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcC--CE
Confidence 57999998 999999999999999999999984421 1111 124688999999999988887 6655 88
Q ss_pred EEEccc
Q 043169 169 VMHLAA 174 (421)
Q Consensus 169 vi~~Ag 174 (421)
||-+..
T Consensus 69 vi~~~~ 74 (453)
T PRK09496 69 LIAVTD 74 (453)
T ss_pred EEEecC
Confidence 877653
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.015 Score=56.52 Aligned_cols=173 Identities=13% Similarity=0.090 Sum_probs=103.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-c----EEE----EeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHH
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-G----VVG----LDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLA 158 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~----V~~----~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~ 158 (421)
+.-+|.|+|++|.+|.+++-.|+..|. . |.+ ++++.+..+...-...... ....++.+.. .+ .
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~---~~----y 115 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGI---DP----Y 115 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEec---CC----H
Confidence 346899999999999999999998873 3 444 3665555443332222211 0111222222 22 2
Q ss_pred HHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEcccc---ccCCCCCCCCCCCCC
Q 043169 159 KLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSS---VYGLNENVPFSEADR 234 (421)
Q Consensus 159 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~---v~g~~~~~~~~e~~~ 234 (421)
+.++++ |+||-.||.... ...+....+..|..-.+.+.+.++++. ...++|.+|--. .|-.. .....
T Consensus 116 ~~~kda--DIVVitAG~prk--pg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~-----k~sg~ 186 (387)
T TIGR01757 116 EVFEDA--DWALLIGAKPRG--PGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAM-----KNAPN 186 (387)
T ss_pred HHhCCC--CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHH-----HHcCC
Confidence 446666 999999997432 223456788999999999999998854 554667666411 01000 00000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
+ +....=+.+.+..-++-..++++.++....|+-+.|+|...+
T Consensus 187 ~-~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd 229 (387)
T TIGR01757 187 I-PRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST 229 (387)
T ss_pred C-cccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC
Confidence 1 111112345566666777777778888888877888887544
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.014 Score=51.59 Aligned_cols=111 Identities=19% Similarity=0.193 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC---C-------hh----H----HHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY---D-------PS----L----KKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~---~-------~~----~----~~~~~~~~~~~~v~~~~ 148 (421)
+++++|+|.|+ |++|.++++.|+..|. +++++|.+.-.. . .. + .+...+..+...++.+.
T Consensus 19 L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 19 LRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 67789999996 6699999999999996 577877643110 0 00 0 01111122233445555
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
..+.+ ...++++++ |+||.+.. |...-..+-++|++.+. .+|+.++.+.+|
T Consensus 98 ~~~~~--~~~~~~~~~--dvVi~~~~-----------------~~~~~~~ln~~c~~~~i--p~i~~~~~G~~G 148 (197)
T cd01492 98 DDISE--KPEEFFSQF--DVVVATEL-----------------SRAELVKINELCRKLGV--KFYATGVHGLFG 148 (197)
T ss_pred cCccc--cHHHHHhCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEEecCCEE
Confidence 55542 234556655 88886532 12233456678888886 688888766655
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.018 Score=54.47 Aligned_cols=109 Identities=20% Similarity=0.241 Sum_probs=68.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC--------------ChhHH----HHHHHhhcCCceEEEEcccC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY--------------DPSLK----KARKALLNNHGVFVIEGDIN 152 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~--------------~~~~~----~~~~~~~~~~~v~~~~~Dl~ 152 (421)
+|+|.|+ |++|.++++.|+..|. ++.++|.+.-.. ...+. +...+....-.+..+..++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 4899997 9999999999999995 677777643110 00011 11111122345666777777
Q ss_pred CHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 153 d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
+.....++++++ |+||.+.- |...-..+-+.|.+.++ .+|...+.+.+|
T Consensus 80 ~~~~~~~f~~~~--DvVv~a~D-----------------n~~ar~~in~~c~~~~i--p~I~~gt~G~~G 128 (312)
T cd01489 80 DPDFNVEFFKQF--DLVFNALD-----------------NLAARRHVNKMCLAADV--PLIESGTTGFLG 128 (312)
T ss_pred CccchHHHHhcC--CEEEECCC-----------------CHHHHHHHHHHHHHCCC--CEEEEecCccee
Confidence 654445667766 88888642 23334456677888775 677777666554
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.03 Score=50.88 Aligned_cols=224 Identities=20% Similarity=0.126 Sum_probs=121.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc---EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDG---VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
..+-+|.|.||.|+||+.|...| +.... ..+.|..+...-. ..+.+-+-.-.....+-.+.+++++++.
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLl-K~np~Vs~LaLYDi~~~~GVa-------aDlSHI~T~s~V~g~~g~~~L~~al~~a 97 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLL-KLNPLVSELALYDIANTPGVA-------ADLSHINTNSSVVGFTGADGLENALKGA 97 (345)
T ss_pred cCcceEEEEecCCccCccHHHHH-hcCcccceeeeeecccCCccc-------ccccccCCCCceeccCChhHHHHHhcCC
Confidence 35678999999999999998665 45443 3333432211100 0001111111122334467899999998
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCC----CCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFS----EADRTDQPAS 240 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~----e~~~~~~~~~ 240 (421)
|+||--||+..-+ --..++.|++|-.-...|..++.+..+...+.++|-- |- ...|+- ...-..+|..
T Consensus 98 --dvVvIPAGVPRKP--GMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNP-VN---stVPIaaevlKk~G~ydpkk 169 (345)
T KOG1494|consen 98 --DVVVIPAGVPRKP--GMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNP-VN---STVPIAAEVLKKAGVYDPKK 169 (345)
T ss_pred --CEEEecCCCCCCC--CCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCc-cc---ccchHHHHHHHHcCCCCccc
Confidence 9999999984321 1223578999999999999999888766466666541 10 000100 0001224556
Q ss_pred hHHHHHHHHHHHHHHHHHHhC--------CcEEEEEeccccCC-------CCC-CCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 241 LYAATKKAGEEIAHTYNHIYG--------LSITGLRFFTVYGP-------WGR-PDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~~g--------i~~~~vrp~~v~G~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
.++.+.+..-+.-.-+++..+ ++|+-=+-|..+=| ... .+..+..++.++..++...+-...|.
T Consensus 170 lfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGa 249 (345)
T KOG1494|consen 170 LFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGA 249 (345)
T ss_pred eeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCC
Confidence 677777765544433333323 33332233322111 111 11245667777777777666555555
Q ss_pred CcceeecccHH-HHHHHHHHhhhc
Q 043169 305 VDLARDFTYID-DIVKGCLGSLDT 327 (421)
Q Consensus 305 ~~~~~~~i~v~-Dva~a~~~~l~~ 327 (421)
|..+.+.-|.. -.|.+++..+.-
T Consensus 250 GSATLSMAyAga~fa~s~lrgl~G 273 (345)
T KOG1494|consen 250 GSATLSMAYAGAKFADSLLRGLNG 273 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHhCC
Confidence 66666665543 344555555543
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0049 Score=52.83 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=46.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
++.+++|+|.|++..+|..+++.|.++|.+|+++.|+. +.+.+.+.++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------------------------~~l~~~l~~a-- 88 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------------------------KNLKEHTKQA-- 88 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------------------------hhHHHHHhhC--
Confidence 47899999999966789999999999999999988731 3455667767
Q ss_pred cEEEEcccc
Q 043169 167 THVMHLAAQ 175 (421)
Q Consensus 167 d~vi~~Ag~ 175 (421)
|+||.+.+.
T Consensus 89 DiVIsat~~ 97 (168)
T cd01080 89 DIVIVAVGK 97 (168)
T ss_pred CEEEEcCCC
Confidence 999998875
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.022 Score=52.60 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=27.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDN 122 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r 122 (421)
++|.|+|++|.+|+.+++.+.+. +.++++++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d 34 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVD 34 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 68999999999999999998875 688877654
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.034 Score=51.38 Aligned_cols=112 Identities=16% Similarity=0.236 Sum_probs=65.9
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCC----------Ch--------hHHHHHHHhhcCCceEE
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYY----------DP--------SLKKARKALLNNHGVFV 146 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~----------~~--------~~~~~~~~~~~~~~v~~ 146 (421)
..+++.+|+|.|+ |++|+++++.|++.| -+++++|.+.-.. .. ...+......+...+..
T Consensus 26 ~kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~ 104 (268)
T PRK15116 26 QLFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTV 104 (268)
T ss_pred HHhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEE
Confidence 3478889999997 999999999999999 5788887653110 01 00111111112223343
Q ss_pred EEcccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 147 ~~~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
+.. .-+++.+.+++.. ++|+||.+... +..-..|.++|++.+. .+|.+..++
T Consensus 105 i~~-~i~~e~~~~ll~~-~~D~VIdaiD~-----------------~~~k~~L~~~c~~~~i--p~I~~gGag 156 (268)
T PRK15116 105 VDD-FITPDNVAEYMSA-GFSYVIDAIDS-----------------VRPKAALIAYCRRNKI--PLVTTGGAG 156 (268)
T ss_pred Eec-ccChhhHHHHhcC-CCCEEEEcCCC-----------------HHHHHHHHHHHHHcCC--CEEEECCcc
Confidence 422 2245556666532 35888887642 2223457888888875 566554443
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.02 Score=55.74 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC---C-----------ChhHHHH----HHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNY---Y-----------DPSLKKA----RKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~---~-----------~~~~~~~----~~~~~~~~~v~~~~ 148 (421)
+++.+|+|.|+ |++|+++++.|+..|. +++++|.+.=. . ...+... .......-+++.+.
T Consensus 39 l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 39 LHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 67889999997 9999999999999995 78888875310 0 0001011 11112233455666
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccc
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 220 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v 220 (421)
..++ .+.+.++++++ |+||.+.- |+..-..+-++|.+.+. .+|+.+..+-
T Consensus 118 ~~i~-~~~~~~~~~~~--DlVid~~D-----------------n~~~r~~in~~~~~~~i--P~v~~~~~g~ 167 (370)
T PRK05600 118 ERLT-AENAVELLNGV--DLVLDGSD-----------------SFATKFLVADAAEITGT--PLVWGTVLRF 167 (370)
T ss_pred eecC-HHHHHHHHhCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEEEecC
Confidence 6664 45667778777 99998763 23333456677888875 5777765433
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.01 Score=56.20 Aligned_cols=116 Identities=19% Similarity=0.154 Sum_probs=72.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceE-EEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVF-VIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|+|.|.|+ |.+|..++..|+.+|. +|+++++.++..... .............. .+.. -+|.+ + ++++ |+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~-a~d~~~~~~~~~~~~~i~~-t~d~~---~-~~~a--Di 72 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGK-ALDMYEASPVGGFDTKVTG-TNNYA---D-TANS--DI 72 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHH-HHhhhhhhhccCCCcEEEe-cCCHH---H-hCCC--CE
Confidence 57899997 9999999999999886 899999855432211 11011111101110 1111 12333 2 4556 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
||-+||.... ...+....+..|..-...+++.+.+.+....||.+|.
T Consensus 73 VIitag~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 73 VVITAGLPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred EEEcCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999996421 1123345778899989999998888776656777665
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.022 Score=55.97 Aligned_cols=112 Identities=21% Similarity=0.120 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------Ch----hHHH----HHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY----------DP----SLKK----ARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----------~~----~~~~----~~~~~~~~~~v~~~~ 148 (421)
++..+|+|.|+ |++|+++++.|+..|. ++.++|.+.=.. +. .+.+ ...+..+.-++..+.
T Consensus 40 L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 118 (392)
T PRK07878 40 LKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHE 118 (392)
T ss_pred HhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEe
Confidence 57789999997 9999999999999996 677777543110 00 0000 111112223455555
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
..++. +...++++++ |+||.+.. |...-..+-++|.+.++ .+|+.+..+.+|
T Consensus 119 ~~i~~-~~~~~~~~~~--D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~--p~v~~~~~g~~G 170 (392)
T PRK07878 119 FRLDP-SNAVELFSQY--DLILDGTD-----------------NFATRYLVNDAAVLAGK--PYVWGSIYRFEG 170 (392)
T ss_pred ccCCh-hHHHHHHhcC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEEeccCEE
Confidence 55553 3456677766 88887652 23333446678888875 688887766555
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.025 Score=53.45 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH---HHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK---LLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 164 (421)
..+++++|+|++|.+|..+++.+.+.|.+|++++++.++ .+.. .. .++.. ..|..+.+ .+.+.....
T Consensus 143 ~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~----~~~~-~~----~g~~~-~~~~~~~~~~~~~~~~~~~~ 212 (325)
T cd08253 143 KAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEG----AELV-RQ----AGADA-VFNYRAEDLADRILAATAGQ 212 (325)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHH-HH----cCCCE-EEeCCCcCHHHHHHHHcCCC
Confidence 367899999999999999999999999999999884321 1111 11 12211 12333333 333333333
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
.+|++++++|.
T Consensus 213 ~~d~vi~~~~~ 223 (325)
T cd08253 213 GVDVIIEVLAN 223 (325)
T ss_pred ceEEEEECCch
Confidence 57999999863
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.011 Score=56.56 Aligned_cols=102 Identities=25% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
|.+|||+||+|++|...++.+.+.|+.|+++..+++ ......+.....-+.+..-|+ .+.++++..+..+|+|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~-----k~~~~~~lGAd~vi~y~~~~~--~~~v~~~t~g~gvDvv 215 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSE-----KLELLKELGADHVINYREEDF--VEQVRELTGGKGVDVV 215 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHH-----HHHHHHhcCCCEEEcCCcccH--HHHHHHHcCCCCceEE
Confidence 889999999999999999999999977666655321 111111111111122222221 2344555544457999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
+...|-.. ....++.++..| +++.+....
T Consensus 216 ~D~vG~~~------------------~~~~l~~l~~~G---~lv~ig~~~ 244 (326)
T COG0604 216 LDTVGGDT------------------FAASLAALAPGG---RLVSIGALS 244 (326)
T ss_pred EECCCHHH------------------HHHHHHHhccCC---EEEEEecCC
Confidence 99887421 123444455544 888777654
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.003 Score=59.14 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=34.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNN 125 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~ 125 (421)
.+++++|+|+|+ |++|++++..|++.| .+|++++|+.+
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~ 158 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVE 158 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 467899999997 999999999999999 78999999654
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=57.03 Aligned_cols=37 Identities=35% Similarity=0.412 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
..|.+|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3688999999999999999998888999999888743
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=55.62 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=49.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+++++|+|.|. |.+|+.+++.|...|.+|++.+|+.+. .. .. ...+...+ +.+.+.+.+++.
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~----~~--~~---~~~g~~~~-----~~~~l~~~l~~a-- 210 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSAD----LA--RI---TEMGLIPF-----PLNKLEEKVAEI-- 210 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHH----HH--HH---HHCCCeee-----cHHHHHHHhccC--
Confidence 578999999997 889999999999999999999985421 11 11 11122211 245566777776
Q ss_pred cEEEEcc
Q 043169 167 THVMHLA 173 (421)
Q Consensus 167 d~vi~~A 173 (421)
|+||++.
T Consensus 211 DiVint~ 217 (287)
T TIGR02853 211 DIVINTI 217 (287)
T ss_pred CEEEECC
Confidence 9999976
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.036 Score=50.25 Aligned_cols=109 Identities=15% Similarity=0.107 Sum_probs=66.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------ChhHHH--------HHHHhhcCCceEEEEcccC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY----------DPSLKK--------ARKALLNNHGVFVIEGDIN 152 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----------~~~~~~--------~~~~~~~~~~v~~~~~Dl~ 152 (421)
+|+|.|+ |++|.++++.|+..|. ++.++|.+.=.. +....+ ...+..+.-++..+..++.
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 4789985 9999999999999996 677777643110 001100 1111122344666777775
Q ss_pred CHHHH-HHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 153 DAKLL-AKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 153 d~~~~-~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
+.+.. .++++++ |+||.+.. |+..-..+-+.|.+.+. .+|..++.+.+|
T Consensus 80 ~~~~~~~~f~~~~--DvVi~a~D-----------------n~~aR~~ln~~c~~~~i--plI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQF--HIIVNALD-----------------NIIARRYVNGMLIFLIV--PLIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEcccCCce
Confidence 54332 3566665 88888642 34444567777888775 688777765554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.014 Score=47.45 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=55.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHH-CCCcEEEE-eCCCCCCC-hhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKK-RGDGVVGL-DNFNNYYD-PSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~-~g~~V~~~-~r~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|.|.|++|-+|+.+++.+.+ .|+++++. +|..+... ....... ..... .+.-.++++++++.. |
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~--~~~~~-------~~~v~~~l~~~~~~~--D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELA--GIGPL-------GVPVTDDLEELLEEA--D 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHC--TSST--------SSBEBS-HHHHTTH---S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhh--CcCCc-------ccccchhHHHhcccC--C
Confidence 5799999999999999999999 67886665 55331111 1111100 00011 111124566777774 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+||...- -..+...++.|.+++. .+|.-+|
T Consensus 70 VvIDfT~------------------p~~~~~~~~~~~~~g~--~~ViGTT 99 (124)
T PF01113_consen 70 VVIDFTN------------------PDAVYDNLEYALKHGV--PLVIGTT 99 (124)
T ss_dssp EEEEES-------------------HHHHHHHHHHHHHHT---EEEEE-S
T ss_pred EEEEcCC------------------hHHhHHHHHHHHhCCC--CEEEECC
Confidence 9998752 2345667888888875 5554333
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0032 Score=59.92 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=31.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY 127 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 127 (421)
|+|.|.| .|.+|..++..|+++|++|++.+++.+..
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~ 38 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAA 38 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHH
Confidence 5799999 69999999999999999999999976433
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.027 Score=53.86 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHh---hcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLF---DAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~---~~~ 164 (421)
..+.+++|+|+++.+|..+++.+...|++|++++++.++. ... .. .+.. ...|..+.+....+. ...
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~----~~~--~~---~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKL----ERA--KE---LGAD-YVIDYRKEDFVREVRELTGKR 234 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH----HHH--HH---cCCC-eEEecCChHHHHHHHHHhCCC
Confidence 3578999999999999999999999999999988744211 111 11 1111 123555544444333 233
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
.+|++++++|... ....++.++..| ++|.+++..
T Consensus 235 ~~d~~i~~~g~~~------------------~~~~~~~l~~~G---~~v~~~~~~ 268 (342)
T cd08266 235 GVDVVVEHVGAAT------------------WEKSLKSLARGG---RLVTCGATT 268 (342)
T ss_pred CCcEEEECCcHHH------------------HHHHHHHhhcCC---EEEEEecCC
Confidence 5799999987311 123444555444 899988754
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.038 Score=50.03 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC--------------ChhH----HHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY--------------DPSL----KKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~--------------~~~~----~~~~~~~~~~~~v~~~~ 148 (421)
+++.+|+|.|+ |++|+++++.|++.|. +++++|.+.-.. ...+ .+......+...++.+.
T Consensus 9 L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 9 LRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 57789999996 9999999999999995 777777643100 0000 00111111223444454
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
..++ .+...+++.. ++|+||.+.. |+..-..|.++|++.+. .+|...+.
T Consensus 88 ~~i~-~~~~~~l~~~-~~D~VvdaiD-----------------~~~~k~~L~~~c~~~~i--p~I~s~g~ 136 (231)
T cd00755 88 EFLT-PDNSEDLLGG-DPDFVVDAID-----------------SIRAKVALIAYCRKRKI--PVISSMGA 136 (231)
T ss_pred eecC-HhHHHHHhcC-CCCEEEEcCC-----------------CHHHHHHHHHHHHHhCC--CEEEEeCC
Confidence 4444 3445555532 3588888753 22334567788888875 56655443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.01 Score=56.95 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEE---EEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVV---GLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
++++|.|+||||++|..+++.|.++++.+. .+.. .+...+... ..+ ...++.+.+.. + ++++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s-~~~aG~~l~--------~~~---~~l~~~~~~~~-~-~~~v- 67 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLAS-SESAGHSVP--------FAG---KNLRVREVDSF-D-FSQV- 67 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEEC-cccCCCeec--------cCC---cceEEeeCChH-H-hcCC-
Confidence 347899999999999999999998876433 3332 221111110 111 12333332221 2 3555
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVY 221 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~ 221 (421)
|+|+.+++.. -+..+++.+.+.|. ++|=.||..-+
T Consensus 68 -D~vFla~p~~------------------~s~~~v~~~~~~G~--~VIDlS~~fR~ 102 (336)
T PRK05671 68 -QLAFFAAGAA------------------VSRSFAEKARAAGC--SVIDLSGALPS 102 (336)
T ss_pred -CEEEEcCCHH------------------HHHHHHHHHHHCCC--eEEECchhhcC
Confidence 9999877521 12347777777775 78888886643
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.028 Score=53.79 Aligned_cols=36 Identities=42% Similarity=0.555 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.|.+|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999999999999998888899999888743
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0077 Score=56.21 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
.++||+|+|.|++|.+|+.++..|+++|++|+++.|
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 478999999999889999999999999998888865
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.031 Score=52.77 Aligned_cols=164 Identities=13% Similarity=0.086 Sum_probs=99.7
Q ss_pred EEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHHhhccCCcEEEE
Q 043169 95 VTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALL-NNHGVFVIEGDINDAKLLAKLFDAVAFTHVMH 171 (421)
Q Consensus 95 ITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~ 171 (421)
|.|+ |.||++++..|+.++. +++++|++.+..+........... ....+.+.. .+. +.++++ |+||-
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~----~~~~da--DivVi 70 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS---GDY----SDCKDA--DLVVI 70 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec---CCH----HHHCCC--CEEEE
Confidence 3565 9999999999998874 799999976654443322222111 112233332 233 456666 99999
Q ss_pred cccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChHHH-HHH
Q 043169 172 LAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLYAA-TKK 247 (421)
Q Consensus 172 ~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y~~-sK~ 247 (421)
.||.... ...+....+..|..-...+.+.+++++....+|.+|.-. .|-... .. ..++....+. +.+
T Consensus 71 tag~~rk--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~~-----~s--g~p~~~viG~gt~L 141 (299)
T TIGR01771 71 TAGAPQK--PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWK-----LS--GFPKNRVIGSGTVL 141 (299)
T ss_pred CCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH-----Hh--CCCHHHEEeccchH
Confidence 9997432 123456789999999999999999888776777777521 110000 00 0011122233 344
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
...++...+++..|+...-++. .|+|....
T Consensus 142 Ds~R~~~~la~~l~v~~~~V~~-~v~GeHG~ 171 (299)
T TIGR01771 142 DTARLRYLLAEKLGVDPQSVHA-YIIGEHGD 171 (299)
T ss_pred HHHHHHHHHHHHhCcCcCeEEE-EEEecCCC
Confidence 4556666667777888888875 58887543
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.024 Score=54.05 Aligned_cols=36 Identities=39% Similarity=0.457 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+.+++|+||+|.+|..+++.+...|.+|++++++.
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~ 197 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP 197 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 577999999999999999999999999999988743
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.013 Score=53.99 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=57.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
...++|++.| ||-+|++++-++.+.|.+|+.+||..+.. .... --.-+..|+.|.+.++.+++..+||
T Consensus 10 ~~a~kvmLLG-SGELGKEvaIe~QRLG~eViAVDrY~~AP----AmqV-------Ahrs~Vi~MlD~~al~avv~rekPd 77 (394)
T COG0027 10 PQATKVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAP----AMQV-------AHRSYVIDMLDGDALRAVVEREKPD 77 (394)
T ss_pred CCCeEEEEec-CCccchHHHHHHHhcCCEEEEecCcCCCh----hhhh-------hhheeeeeccCHHHHHHHHHhhCCC
Confidence 3556789998 79999999999999999999999955421 1110 1123457999999999999999999
Q ss_pred EEEEcc
Q 043169 168 HVMHLA 173 (421)
Q Consensus 168 ~vi~~A 173 (421)
.||---
T Consensus 78 ~IVpEi 83 (394)
T COG0027 78 YIVPEI 83 (394)
T ss_pred eeeehh
Confidence 988643
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0046 Score=57.97 Aligned_cols=38 Identities=26% Similarity=0.156 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNN 125 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~ 125 (421)
..++++|+|.|+ |+.|++++..|++.|. +|++++|+.+
T Consensus 124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ 162 (284)
T PRK12549 124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPA 162 (284)
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 357899999997 9999999999999997 7999999654
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0013 Score=58.35 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
+++||+|+|+|. |.+|+++++.|.+.|++|++.+++
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 378999999997 799999999999999999988874
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.015 Score=56.65 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
..+++|+|.|+ |.+|...++.|.+.|.+|++++|+.++ .+..... . + ..+..+..+.+.+.+.++++ |
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~----~~~l~~~-~---g-~~v~~~~~~~~~l~~~l~~a--D 232 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDR----LRQLDAE-F---G-GRIHTRYSNAYEIEDAVKRA--D 232 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHH----HHHHHHh-c---C-ceeEeccCCHHHHHHHHccC--C
Confidence 35677999987 999999999999999999999984321 1111111 1 1 12334566778888888877 9
Q ss_pred EEEEcccc
Q 043169 168 HVMHLAAQ 175 (421)
Q Consensus 168 ~vi~~Ag~ 175 (421)
+||++++.
T Consensus 233 vVI~a~~~ 240 (370)
T TIGR00518 233 LLIGAVLI 240 (370)
T ss_pred EEEEcccc
Confidence 99998854
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.02 Score=55.12 Aligned_cols=78 Identities=26% Similarity=0.219 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhh--cc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFD--AV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~--~~ 164 (421)
..|+.|||.||+|++|++.++.+...|+ +|+..+. .+. .+.... +.. -...|..+++-+++..+ ..
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s-~e~-----~~l~k~-lGA----d~vvdy~~~~~~e~~kk~~~~ 224 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACS-KEK-----LELVKK-LGA----DEVVDYKDENVVELIKKYTGK 224 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcc-cch-----HHHHHH-cCC----cEeecCCCHHHHHHHHhhcCC
Confidence 4788999999999999999999988894 4554444 321 111111 111 12346777555555555 23
Q ss_pred CCcEEEEccccc
Q 043169 165 AFTHVMHLAAQA 176 (421)
Q Consensus 165 ~~d~vi~~Ag~~ 176 (421)
.+|+|+.|+|..
T Consensus 225 ~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 225 GVDVVLDCVGGS 236 (347)
T ss_pred CccEEEECCCCC
Confidence 679999999863
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0086 Score=52.05 Aligned_cols=73 Identities=23% Similarity=0.207 Sum_probs=48.2
Q ss_pred hcccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhh
Q 043169 83 AQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 83 ~~~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
.....+.|++|.|.|. |-||+++++.|..-|.+|++.+|+.. ..... ....+. ..+++++++
T Consensus 29 ~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~------~~~~~---~~~~~~--------~~~l~ell~ 90 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPK------PEEGA---DEFGVE--------YVSLDELLA 90 (178)
T ss_dssp TTBS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCH------HHHHH---HHTTEE--------ESSHHHHHH
T ss_pred CCccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCC------hhhhc---ccccce--------eeehhhhcc
Confidence 3445589999999995 99999999999999999999999542 11100 111111 123557777
Q ss_pred ccCCcEEEEcccc
Q 043169 163 AVAFTHVMHLAAQ 175 (421)
Q Consensus 163 ~~~~d~vi~~Ag~ 175 (421)
++ |+|+++...
T Consensus 91 ~a--Div~~~~pl 101 (178)
T PF02826_consen 91 QA--DIVSLHLPL 101 (178)
T ss_dssp H---SEEEE-SSS
T ss_pred hh--hhhhhhhcc
Confidence 77 999888754
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.045 Score=57.61 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCC---CCCC------hh--------HHHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFN---NYYD------PS--------LKKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~---~~~~------~~--------~~~~~~~~~~~~~v~~~~ 148 (421)
+++.+|+|.|+ | +|++++..|++.|. +++++|.+. +... .. .++........-+++.+.
T Consensus 105 L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 105 LGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 67889999999 7 99999999999994 788877643 1100 00 011111222344566777
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
..++ .+.+.++++++ |+||.+.- |+..=..+-++|.+.++ .+|+.++
T Consensus 183 ~~i~-~~n~~~~l~~~--DlVvD~~D-----------------~~~~R~~ln~~a~~~~i--P~i~~~~ 229 (722)
T PRK07877 183 DGLT-EDNVDAFLDGL--DVVVEECD-----------------SLDVKVLLREAARARRI--PVLMATS 229 (722)
T ss_pred ccCC-HHHHHHHhcCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEcC
Confidence 7776 67788888877 99999852 23333455677888875 5777665
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.021 Score=56.25 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH----HHHHHHhhcc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA----KLLAKLFDAV 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~----~~~~~~~~~~ 164 (421)
++|+|||||++..+|..+++.|.+.|++|++++....... . .... . .....+...-.|. +.+.+++++.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~----~-~s~~-~-d~~~~~p~p~~d~~~~~~~L~~i~~~~ 75 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLS----R-FSRA-V-DGFYTIPSPRWDPDAYIQALLSIVQRE 75 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHH----H-HHHh-h-hheEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999999999999987532111 0 0000 1 1122221122233 4556666676
Q ss_pred CCcEEEEccc
Q 043169 165 AFTHVMHLAA 174 (421)
Q Consensus 165 ~~d~vi~~Ag 174 (421)
++|+||-...
T Consensus 76 ~id~vIP~~e 85 (389)
T PRK06849 76 NIDLLIPTCE 85 (389)
T ss_pred CCCEEEECCh
Confidence 8899998765
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.021 Score=53.87 Aligned_cols=71 Identities=23% Similarity=0.203 Sum_probs=50.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+.+++|+|.|. |.+|..++..|.+.|++|++.+|+.+. .... ...+..++ +.+.+.+.+.++
T Consensus 149 ~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~------~~~~---~~~G~~~~-----~~~~l~~~l~~a-- 211 (296)
T PRK08306 149 TIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAH------LARI---TEMGLSPF-----HLSELAEEVGKI-- 211 (296)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHH------HHHH---HHcCCeee-----cHHHHHHHhCCC--
Confidence 357899999996 889999999999999999999985321 1111 11223322 234566777766
Q ss_pred cEEEEccc
Q 043169 167 THVMHLAA 174 (421)
Q Consensus 167 d~vi~~Ag 174 (421)
|+||+++.
T Consensus 212 DiVI~t~p 219 (296)
T PRK08306 212 DIIFNTIP 219 (296)
T ss_pred CEEEECCC
Confidence 99999763
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.084 Score=48.73 Aligned_cols=42 Identities=26% Similarity=0.259 Sum_probs=33.2
Q ss_pred hhcccCCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 043169 82 SAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN 124 (421)
Q Consensus 82 ~~~~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~ 124 (421)
...+..+++.-|+|.|+ |++|++++..|++.|. ++.+++-+.
T Consensus 66 ee~m~kl~~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 66 EEGMEKLTNSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred hhHHHHhcCcEEEEEec-CchhHHHHHHHHHhcCceEEEechhh
Confidence 33445578889999997 9999999999999996 566666533
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.022 Score=55.04 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=59.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEE-EcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVI-EGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|.|.||+|++|+++++.|.++ +.+++.++++.+..+...+. . +.+..+ ..++.+.+.. .+++ +|+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~----~---~~~~~~~~~~~~~~~~~--~~~~--vD~ 71 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDV----H---PHLRGLVDLVLEPLDPE--ILAG--ADV 71 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHh----C---cccccccCceeecCCHH--HhcC--CCE
Confidence 68999999999999999999987 67887776633221111110 0 111111 1223333222 2344 499
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccccc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVY 221 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~ 221 (421)
|+-+... .....+...+.+.|. +||=.|+..-+
T Consensus 72 Vf~alP~------------------~~~~~~v~~a~~aG~--~VID~S~~fR~ 104 (343)
T PRK00436 72 VFLALPH------------------GVSMDLAPQLLEAGV--KVIDLSADFRL 104 (343)
T ss_pred EEECCCc------------------HHHHHHHHHHHhCCC--EEEECCcccCC
Confidence 9887642 123456666666664 89988886544
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.05 Score=53.46 Aligned_cols=112 Identities=19% Similarity=0.088 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------Chh----H----HHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY----------DPS----L----KKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----------~~~----~----~~~~~~~~~~~~v~~~~ 148 (421)
++..+|+|.|+ |++|.++++.|+..|. +++++|.+.=.. ... + .+...+..+.-+++.+.
T Consensus 36 L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~ 114 (390)
T PRK07411 36 LKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE 114 (390)
T ss_pred HhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence 57789999997 9999999999999996 566666543110 000 0 11111112334556666
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
..++. +...+++.++ |+||.+.. |...-..+-++|.+.+. .+|+.+..+-+|
T Consensus 115 ~~~~~-~~~~~~~~~~--D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~--p~v~~~~~g~~g 166 (390)
T PRK07411 115 TRLSS-ENALDILAPY--DVVVDGTD-----------------NFPTRYLVNDACVLLNK--PNVYGSIFRFEG 166 (390)
T ss_pred cccCH-HhHHHHHhCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEEEccCEE
Confidence 66654 4566777776 99998763 22223345577777774 677766544433
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.058 Score=51.09 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=69.2
Q ss_pred EEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhc--CCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLN--NHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
|.|.|+ |.+|..++..|+.+|. +|+++|++++..... ......... .....+.. -+|. +.++++ |+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~-~~dl~~~~~~~~~~~~I~~--t~d~----~~l~dA--DiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGK-ALDISQAAPILGSDTKVTG--TNDY----EDIAGS--DVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHH-HHHHHHhhhhcCCCeEEEE--cCCH----HHhCCC--CEE
Confidence 468998 9999999999998876 999999986533211 111111111 11122211 1232 236667 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|.++|..... ..+....+..|..-...+++.+.+......+|.+|-
T Consensus 71 Iit~g~p~~~--~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 71 VITAGIPRKP--GMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred EEecCCCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999864211 122234566788888888888888776546666654
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.019 Score=55.42 Aligned_cols=101 Identities=12% Similarity=0.080 Sum_probs=58.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEE-eCCCCCCChhHHHHHHHhhcCCceEEE-EcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR-GDGVVGL-DNFNNYYDPSLKKARKALLNNHGVFVI-EGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~~~~~~~~~~~d 167 (421)
++|.|.||||++|..+++.|.++ +.+++.+ +++.+..+.... . .+.+... ..++.+. +..++.++ .|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~----~---~~~l~~~~~~~~~~~-~~~~~~~~--~D 70 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE----V---HPHLRGLVDLNLEPI-DEEEIAED--AD 70 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH----h---CccccccCCceeecC-CHHHhhcC--CC
Confidence 57999999999999999999987 5788754 433221111110 0 0111111 1112211 12233344 49
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccccc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVY 221 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~ 221 (421)
+||.+.+.. .+..++..+.+.|. ++|-.|+..-+
T Consensus 71 vVf~alP~~------------------~s~~~~~~~~~~G~--~VIDlS~~fR~ 104 (346)
T TIGR01850 71 VVFLALPHG------------------VSAELAPELLAAGV--KVIDLSADFRL 104 (346)
T ss_pred EEEECCCch------------------HHHHHHHHHHhCCC--EEEeCChhhhc
Confidence 999887531 24567777766773 89999986543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.023 Score=53.31 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNN 125 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~ 125 (421)
.++|+++|.|+ |+.+++++..|+..|. +|++++|+.+
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 57899999997 8889999999999995 7999999643
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.031 Score=41.41 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=30.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY 127 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 127 (421)
+|+|.|| |++|-.+|..|.+.|.+|+++.++..-.
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 4788886 9999999999999999999999966543
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.09 Score=52.87 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=56.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
...++++|.|+ |.+|..+++.|.++|++|++++++.+.. +.... ...++.++.+|.++.+.+.++--+ +.|
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~----~~~~~---~~~~~~~i~gd~~~~~~L~~~~~~-~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERA----EELAE---ELPNTLVLHGDGTDQELLEEEGID-EAD 299 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH----HHHHH---HCCCCeEEECCCCCHHHHHhcCCc-cCC
Confidence 45789999998 9999999999999999999998744211 11111 124678899999999888665422 348
Q ss_pred EEEEcc
Q 043169 168 HVMHLA 173 (421)
Q Consensus 168 ~vi~~A 173 (421)
.||-+.
T Consensus 300 ~vi~~~ 305 (453)
T PRK09496 300 AFIALT 305 (453)
T ss_pred EEEECC
Confidence 887543
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.019 Score=53.39 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=48.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.++||+|+|.|.++.+|+.++..|.++|++|+++.+.. ..+.+.++++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~~~A-- 202 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYLKDA-- 202 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHHhhC--
Confidence 47999999999999999999999999999999987621 1345666666
Q ss_pred cEEEEccccc
Q 043169 167 THVMHLAAQA 176 (421)
Q Consensus 167 d~vi~~Ag~~ 176 (421)
|+||...|..
T Consensus 203 DIVIsAvg~p 212 (286)
T PRK14175 203 DVIVSAVGKP 212 (286)
T ss_pred CEEEECCCCC
Confidence 9999998864
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.022 Score=54.87 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=55.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEE---EEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVV---GLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+|.|.||||++|..+++.|.++|+.++ .+.+..+...... ..+......|+. . +.++++ |+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~---------~~~~~~~~~~~~-~----~~~~~~--D~ 64 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT---------FKGKELEVNEAK-I----ESFEGI--DI 64 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee---------eCCeeEEEEeCC-h----HHhcCC--CE
Confidence 478999999999999999999888644 3445332221111 112344445553 1 223445 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
||.++|... +..+...+.+.|. ++|=.||..
T Consensus 65 v~~a~g~~~------------------s~~~a~~~~~~G~--~VID~ss~~ 95 (339)
T TIGR01296 65 ALFSAGGSV------------------SKEFAPKAAKCGA--IVIDNTSAF 95 (339)
T ss_pred EEECCCHHH------------------HHHHHHHHHHCCC--EEEECCHHH
Confidence 999987421 3345555555664 677667644
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.073 Score=47.60 Aligned_cols=114 Identities=20% Similarity=0.169 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC---CChhH------------HHHHHH-hhcCCceEEEEc-
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNY---YDPSL------------KKARKA-LLNNHGVFVIEG- 149 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~---~~~~~------------~~~~~~-~~~~~~v~~~~~- 149 (421)
++.-+|+|.|. ||+|++.++.|++.|. ++.++|-+.=. .+... .-.... ..-.++.++-..
T Consensus 28 l~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~ 106 (263)
T COG1179 28 LKQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN 106 (263)
T ss_pred HhhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH
Confidence 56678999997 9999999999999995 56666653311 00000 000000 011234444333
Q ss_pred ccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCC
Q 043169 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLN 224 (421)
Q Consensus 150 Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~ 224 (421)
|.-.++.+.+++.. .+|+||.+-- |+..=..|+..|.+++. -++||+++-+..
T Consensus 107 ~f~t~en~~~~~~~-~~DyvIDaiD-----------------~v~~Kv~Li~~c~~~ki----~vIss~Gag~k~ 159 (263)
T COG1179 107 DFITEENLEDLLSK-GFDYVIDAID-----------------SVRAKVALIAYCRRNKI----PVISSMGAGGKL 159 (263)
T ss_pred hhhCHhHHHHHhcC-CCCEEEEchh-----------------hhHHHHHHHHHHHHcCC----CEEeeccccCCC
Confidence 33466677777766 6788887642 34445678999999874 345666654433
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.058 Score=51.32 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.|++|+|+|+. ++|...++.+.+.|++|++++|+.++.+.+ .+ + ..-.++ |-+|.+.++++-+. +|+
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a-----~~-l--GAd~~i--~~~~~~~~~~~~~~--~d~ 232 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELA-----KK-L--GADHVI--NSSDSDALEAVKEI--ADA 232 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHH-----HH-h--CCcEEE--EcCCchhhHHhHhh--CcE
Confidence 58899999985 999999999888999999999966432221 11 1 112222 22255555554443 599
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
+|.+++ .. . ....+++++..| ++|.+.-.
T Consensus 233 ii~tv~-~~-~----------------~~~~l~~l~~~G---~~v~vG~~ 261 (339)
T COG1064 233 IIDTVG-PA-T----------------LEPSLKALRRGG---TLVLVGLP 261 (339)
T ss_pred EEECCC-hh-h----------------HHHHHHHHhcCC---EEEEECCC
Confidence 999997 21 1 234566667666 88877644
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.061 Score=50.23 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------Ch----hHHH----HHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY----------DP----SLKK----ARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----------~~----~~~~----~~~~~~~~~~v~~~~ 148 (421)
+...+|||.|+ |++|.++++.|+..|. +|+++|...-.. +. .+.+ ...+..+..++..+.
T Consensus 17 L~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~ 95 (286)
T cd01491 17 LQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVST 95 (286)
T ss_pred HhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 56779999997 9999999999999996 577777543110 00 0000 011111223344444
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
.+++ .+.+.++ |+||.+.. |......+-++|+++++ .+|...+.+.+|
T Consensus 96 ~~~~-----~~~l~~f--dvVV~~~~-----------------~~~~~~~in~~c~~~~i--pfI~a~~~G~~G 143 (286)
T cd01491 96 GPLT-----TDELLKF--QVVVLTDA-----------------SLEDQLKINEFCHSPGI--KFISADTRGLFG 143 (286)
T ss_pred ccCC-----HHHHhcC--CEEEEecC-----------------CHHHHHHHHHHHHHcCC--EEEEEeccccEE
Confidence 4322 2345544 88877642 22333456678888885 789888877766
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.07 Score=57.47 Aligned_cols=112 Identities=12% Similarity=0.007 Sum_probs=69.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC---C-------Ch----hH----HHHHHHhhcCCceEEE
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNY---Y-------DP----SL----KKARKALLNNHGVFVI 147 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~---~-------~~----~~----~~~~~~~~~~~~v~~~ 147 (421)
.++..+|+|.|+ ||+|+.+++.|+..|. +++++|.+.=. . .. .+ .+...+..+.-+++.+
T Consensus 329 kL~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~ 407 (989)
T PRK14852 329 RLLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF 407 (989)
T ss_pred HHhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence 367889999996 9999999999999995 56666553200 0 00 00 1111122233456666
Q ss_pred EcccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 148 ~~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
...+ +.+.+.++++++ |+||.+.-... +..-..+.+.|.+.++ .+|+.++.+
T Consensus 408 ~~~I-~~en~~~fl~~~--DiVVDa~D~~~---------------~~~rr~l~~~c~~~~I--P~I~ag~~G 459 (989)
T PRK14852 408 PEGV-AAETIDAFLKDV--DLLVDGIDFFA---------------LDIRRRLFNRALELGI--PVITAGPLG 459 (989)
T ss_pred ecCC-CHHHHHHHhhCC--CEEEECCCCcc---------------HHHHHHHHHHHHHcCC--CEEEeeccc
Confidence 6666 456788888877 99997653211 1122456677888875 677776643
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.027 Score=52.46 Aligned_cols=37 Identities=27% Similarity=0.251 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.++|+++|+|+ |++|++++..|++.|++|++++|+.+
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~ 151 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVS 151 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46889999998 89999999999999999999998543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.009 Score=61.06 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+++|+|+|+|+ |++|++++..|++.|++|++++|+.
T Consensus 376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 376 PLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 367899999998 8999999999999999999998853
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.067 Score=51.50 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=30.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN 124 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~ 124 (421)
+.+|+|+||+|.+|..+++.+...|. +|++++++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~ 190 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSD 190 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence 38999999999999999998888898 799988743
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.026 Score=50.85 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=32.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY 126 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~ 126 (421)
|+|.|.||+|.+|..++..|++.|++|++.+|+.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~ 36 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEK 36 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHH
Confidence 579999999999999999999999999999986543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.055 Score=56.40 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=66.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
..+|+|.|. |-+|+.+++.|.++|++|++++.+.+ ..+...+.+..++.+|.+|++.++++=-+ +.|.+
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~---------~v~~~~~~g~~v~~GDat~~~~L~~agi~-~A~~v 468 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDIS---------AVNLMRKYGYKVYYGDATQLELLRAAGAE-KAEAI 468 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHH---------HHHHHHhCCCeEEEeeCCCHHHHHhcCCc-cCCEE
Confidence 357999995 99999999999999999999998432 11122335788999999999988876321 33777
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEE
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIV 213 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV 213 (421)
|-+-.- -.....+++.+++..+..++|
T Consensus 469 v~~~~d-----------------~~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 469 VITCNE-----------------PEDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred EEEeCC-----------------HHHHHHHHHHHHHHCCCCeEE
Confidence 765321 112334666777766554555
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.014 Score=51.28 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=28.3
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY 126 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~ 126 (421)
....||+|.||+.+++.|++.|++|++..|+.++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChh
Confidence 3445568999999999999999999999776653
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.023 Score=46.48 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+++++++.|. | .|.++++.|++.|++|+++|.+.. +.+ ......+.++.+|+.+++- ++.+++ |.
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~----aV~-----~a~~~~~~~v~dDlf~p~~--~~y~~a--~l 80 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEK----AVE-----KAKKLGLNAFVDDLFNPNL--EIYKNA--KL 80 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHH----HHH-----HHHHhCCeEEECcCCCCCH--HHHhcC--CE
Confidence 5688999997 5 899999999999999999998553 111 1122468899999997652 233333 66
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCC
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~ 209 (421)
|+-. +.+ ..-...+++.+++.+..
T Consensus 81 iysi----------rpp-------~el~~~~~~la~~~~~~ 104 (134)
T PRK04148 81 IYSI----------RPP-------RDLQPFILELAKKINVP 104 (134)
T ss_pred EEEe----------CCC-------HHHHHHHHHHHHHcCCC
Confidence 6543 111 12235688899998874
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.13 Score=54.08 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC------CC-C---Chh----H----HHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN------NY-Y---DPS----L----KKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~------~~-~---~~~----~----~~~~~~~~~~~~v~~~~ 148 (421)
+++.+|+|.|+ |++|+++++.|+..|. +++++|.+. ++ . ... + ++......+..+++.+.
T Consensus 41 L~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~ 119 (679)
T PRK14851 41 LAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP 119 (679)
T ss_pred HhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 67889999996 9999999999999995 566655432 00 0 000 0 11111222345677777
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
..++ .+.+.++++++ |+||.+.-.. .+..-..+.+.|.+.++ .+|+.+
T Consensus 120 ~~i~-~~n~~~~l~~~--DvVid~~D~~---------------~~~~r~~l~~~c~~~~i--P~i~~g 167 (679)
T PRK14851 120 AGIN-ADNMDAFLDGV--DVVLDGLDFF---------------QFEIRRTLFNMAREKGI--PVITAG 167 (679)
T ss_pred cCCC-hHHHHHHHhCC--CEEEECCCCC---------------cHHHHHHHHHHHHHCCC--CEEEee
Confidence 7775 45678888877 9999765211 11122356677888775 566654
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.087 Score=50.25 Aligned_cols=37 Identities=38% Similarity=0.528 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
..|.+|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~ 178 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD 178 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3578999999999999999999999999999888743
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.096 Score=49.34 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
..+.+|+|+|++|.+|..+++.+...|.+|++++++
T Consensus 138 ~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~ 173 (323)
T cd05276 138 KAGETVLIHGGASGVGTAAIQLAKALGARVIATAGS 173 (323)
T ss_pred CCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCC
Confidence 357899999999999999999999999999998874
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.075 Score=55.01 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=53.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
.+++|.|+ |-+|+++++.|.++|++|++++.+++ +.+...+.++..+.+|.+|++.++++--+ +.|.++
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~---------~~~~~~~~g~~~i~GD~~~~~~L~~a~i~-~a~~vi 486 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRT---------RVDELRERGIRAVLGNAANEEIMQLAHLD-CARWLL 486 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHH---------HHHHHHHCCCeEEEcCCCCHHHHHhcCcc-ccCEEE
Confidence 57899996 99999999999999999999998432 11122235789999999999988775422 347665
Q ss_pred Ec
Q 043169 171 HL 172 (421)
Q Consensus 171 ~~ 172 (421)
-+
T Consensus 487 v~ 488 (558)
T PRK10669 487 LT 488 (558)
T ss_pred EE
Confidence 43
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.12 Score=50.08 Aligned_cols=36 Identities=39% Similarity=0.381 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
..|.+|+|+||+|.+|..+++.+...|.+|++++++
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~ 192 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS 192 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC
Confidence 357899999999999999999988899999988763
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.03 Score=52.38 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=34.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
++.||+|.|.|.+|.+|+.++..|+++|++|++..+
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~ 191 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHS 191 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECC
Confidence 478999999999999999999999999999999976
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.057 Score=50.26 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC-CHHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN-DAKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~~~d 167 (421)
.|+.+.|+|+.| +|.--++...+-|++|+++++++++.+++.+ .+ +.+.+ .|.+ |++.++++.+.. |
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~-----~L---GAd~f-v~~~~d~d~~~~~~~~~--d 248 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIK-----SL---GADVF-VDSTEDPDIMKAIMKTT--D 248 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHH-----hc---Cccee-EEecCCHHHHHHHHHhh--c
Confidence 689999999977 9988888877789999999996643222221 11 22222 3555 888888888877 7
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
.++|.+..... . ....++.+++..| ++|.++-..
T Consensus 249 g~~~~v~~~a~----~-----------~~~~~~~~lk~~G---t~V~vg~p~ 282 (360)
T KOG0023|consen 249 GGIDTVSNLAE----H-----------ALEPLLGLLKVNG---TLVLVGLPE 282 (360)
T ss_pred Ccceeeeeccc----c-----------chHHHHHHhhcCC---EEEEEeCcC
Confidence 77776542210 0 0234666777766 899887543
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.062 Score=51.08 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=50.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+++|+|.|.|- |.||+.+++.|..-|.+|++.++..+.. .++... ...+++.++++++
T Consensus 133 ~l~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~~~--------------~~~~~~----~~~~~l~e~l~~a-- 191 (312)
T PRK15469 133 HREDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRKSW--------------PGVQSF----AGREELSAFLSQT-- 191 (312)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCC--------------CCceee----cccccHHHHHhcC--
Confidence 478999999995 9999999999999999999998743211 111111 1245677888888
Q ss_pred cEEEEcccc
Q 043169 167 THVMHLAAQ 175 (421)
Q Consensus 167 d~vi~~Ag~ 175 (421)
|+|+.+...
T Consensus 192 Dvvv~~lPl 200 (312)
T PRK15469 192 RVLINLLPN 200 (312)
T ss_pred CEEEECCCC
Confidence 998887643
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.16 Score=45.14 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
++|++|+|.|| |-+|..-++.|++.|++|++++.... +... ......++.++..+.... .++++ +
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~---~~l~----~l~~~~~i~~~~~~~~~~-----dl~~~--~ 71 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE---SELT----LLAEQGGITWLARCFDAD-----ILEGA--F 71 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC---HHHH----HHHHcCCEEEEeCCCCHH-----HhCCc--E
Confidence 68999999997 99999999999999999999975322 1111 122335788888877632 23444 7
Q ss_pred EEEEcc
Q 043169 168 HVMHLA 173 (421)
Q Consensus 168 ~vi~~A 173 (421)
.||-+-
T Consensus 72 lVi~at 77 (205)
T TIGR01470 72 LVIAAT 77 (205)
T ss_pred EEEECC
Confidence 777543
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.096 Score=50.45 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDG 116 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~ 116 (421)
..++|.|.||||++|.++++.|.+++|.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP 33 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP 33 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCC
Confidence 4578999999999999999999998874
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.11 Score=47.78 Aligned_cols=35 Identities=37% Similarity=0.448 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+.+|+|+|+++ +|..+++.+...|.+|++++++.
T Consensus 134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCH
Confidence 578999999988 99999999999999999998753
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.062 Score=52.99 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+.|+|+|+|+ |..|..++..+.+.|++|++++.+.+.... . ... .++..|..|.+.+.+++++.++|.
T Consensus 11 ~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~--~------~ad---~~~~~~~~d~~~l~~~~~~~~id~ 78 (395)
T PRK09288 11 SATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAM--Q------VAH---RSHVIDMLDGDALRAVIEREKPDY 78 (395)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchH--H------hhh---heEECCCCCHHHHHHHHHHhCCCE
Confidence 5679999996 789999999999999999999875432111 0 000 246778899999999999777899
Q ss_pred EEEcc
Q 043169 169 VMHLA 173 (421)
Q Consensus 169 vi~~A 173 (421)
|+-..
T Consensus 79 vi~~~ 83 (395)
T PRK09288 79 IVPEI 83 (395)
T ss_pred EEEee
Confidence 88653
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.02 Score=53.67 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNN 125 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~ 125 (421)
.++++|+|.|+ |+.|++++..|++.|. +|+++.|+.+
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ 160 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPD 160 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 57899999996 9999999999999996 6999998643
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.021 Score=56.43 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=52.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+++++|+|.|+ |++|+.++..|.+.|. +++++.|+.++. ...... .. .. .+...+++.+.+.++
T Consensus 178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra----~~La~~-~~--~~-----~~~~~~~l~~~l~~a- 243 (414)
T PRK13940 178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKA----QKITSA-FR--NA-----SAHYLSELPQLIKKA- 243 (414)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHH----HHHHHH-hc--CC-----eEecHHHHHHHhccC-
Confidence 468899999997 9999999999999995 688888853211 111111 11 11 233345667777777
Q ss_pred CcEEEEcccccC
Q 043169 166 FTHVMHLAAQAG 177 (421)
Q Consensus 166 ~d~vi~~Ag~~~ 177 (421)
|+||++-+...
T Consensus 244 -DiVI~aT~a~~ 254 (414)
T PRK13940 244 -DIIIAAVNVLE 254 (414)
T ss_pred -CEEEECcCCCC
Confidence 99999987643
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.14 Score=49.17 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC--HHHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND--AKLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~~~ 165 (421)
.+.+|+|+|+ |.+|..+++.+...|.+ |++++++.++ .... ... +... ..|..+ .+.+.+......
T Consensus 163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~-----~~~~-~~~---ga~~-~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPER-----LELA-KAL---GADF-VINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHH-----HHHH-HHh---CCCE-EEcCCcchHHHHHHHhCCCC
Confidence 4889999986 99999999999999998 9888764321 1111 111 1111 123222 334444444435
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
+|+||.+.|.
T Consensus 232 ~d~vid~~g~ 241 (339)
T cd08239 232 ADVAIECSGN 241 (339)
T ss_pred CCEEEECCCC
Confidence 7999999874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.055 Score=52.38 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=29.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFN 124 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~ 124 (421)
.++|+|+||+|++|+++++.|.++. .+++.+.++.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~ 38 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE 38 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence 3789999999999999999999875 4888885544
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.064 Score=52.75 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.+.|++|+|.|+ |.||..+++.+...|++|++++++..
T Consensus 199 ~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 199 MIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChh
Confidence 368999999997 89999999999999999999887543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.067 Score=52.30 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
..++|.|.||.|.+|..+++.|.+.|++|++.+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 55889999999999999999999999999999973
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.11 Score=52.44 Aligned_cols=36 Identities=31% Similarity=0.228 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
..+.+|+|+|+ |.+|...+..+...|++|++++++.
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35789999997 9999999999999999999999844
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.15 Score=47.74 Aligned_cols=34 Identities=38% Similarity=0.512 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNF 123 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~ 123 (421)
.+.+|+|.|+ |.||..+++.+...|.+ |++++++
T Consensus 120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~ 154 (280)
T TIGR03366 120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPS 154 (280)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5789999987 89999999988888987 7777653
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.097 Score=49.86 Aligned_cols=36 Identities=39% Similarity=0.324 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+.+|+|.|++|.+|..+++.+...|.+|++++++.
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKA 181 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCH
Confidence 367999999999999999999999999999988754
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.2 Score=47.76 Aligned_cols=37 Identities=35% Similarity=0.358 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
..+.+|+|.|++|.+|..+++.+.+.|.+|+.++++.
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~ 174 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSD 174 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcH
Confidence 3578999999999999999999999999999988743
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.14 Score=49.42 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~ 124 (421)
.+.+|+|+|+ |.+|...++.+...|+ +|++++++.
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~ 204 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSP 204 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 5789999996 9999999998888998 588888743
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.042 Score=52.31 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=32.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY 127 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 127 (421)
-++|.|.|+ |-+|..++..|+..|++|++.+++.+..
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~ 43 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAE 43 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 468999996 9999999999999999999999976543
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.048 Score=53.24 Aligned_cols=71 Identities=20% Similarity=0.096 Sum_probs=50.1
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+.||+|.|.|. |-||+.+++.|..-|.+|+..+|.....+ ... ..++. -..+++++++.+
T Consensus 188 ~~L~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~~~~~------~~~---~~g~~-------~~~~l~ell~~a- 249 (385)
T PRK07574 188 YDLEGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHRLPEE------VEQ---ELGLT-------YHVSFDSLVSVC- 249 (385)
T ss_pred eecCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCCCchh------hHh---hcCce-------ecCCHHHHhhcC-
Confidence 3589999999996 99999999999999999999998542100 000 01121 123467788877
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
|+|+.+...
T Consensus 250 -DvV~l~lPl 258 (385)
T PRK07574 250 -DVVTIHCPL 258 (385)
T ss_pred -CEEEEcCCC
Confidence 999887653
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.044 Score=45.41 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
++||+|+|.|.+.-+|..++..|.++|+.|....+
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~ 60 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCC
Confidence 78999999999999999999999999999999875
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.072 Score=45.02 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=43.7
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+.||+++|.|= |.+|+.+|+.|...|.+|++.++++ .+... ....+++... +.+++...
T Consensus 19 ~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DP------i~alq---A~~dGf~v~~--------~~~a~~~a- 79 (162)
T PF00670_consen 19 LMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDP------IRALQ---AAMDGFEVMT--------LEEALRDA- 79 (162)
T ss_dssp S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSH------HHHHH---HHHTT-EEE---------HHHHTTT--
T ss_pred eeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECCh------HHHHH---hhhcCcEecC--------HHHHHhhC-
Confidence 3478999999995 9999999999999999999998732 11111 1123444332 45566666
Q ss_pred CcEEEEccccc
Q 043169 166 FTHVMHLAAQA 176 (421)
Q Consensus 166 ~d~vi~~Ag~~ 176 (421)
|++|.+-|..
T Consensus 80 -di~vtaTG~~ 89 (162)
T PF00670_consen 80 -DIFVTATGNK 89 (162)
T ss_dssp -SEEEE-SSSS
T ss_pred -CEEEECCCCc
Confidence 9999887753
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.54 Score=46.15 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=52.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
..+++|.|. |-+|+.++++|.++|.+|++++.+. .+.....++.++.+|-+|++.++++--+ +.+.|
T Consensus 240 k~HvII~G~-g~lg~~v~~~L~~~g~~vvVId~d~-----------~~~~~~~g~~vI~GD~td~e~L~~AgI~-~A~aV 306 (393)
T PRK10537 240 KDHFIICGH-SPLAINTYLGLRQRGQAVTVIVPLG-----------LEHRLPDDADLIPGDSSDSAVLKKAGAA-RARAI 306 (393)
T ss_pred CCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECch-----------hhhhccCCCcEEEeCCCCHHHHHhcCcc-cCCEE
Confidence 568999996 7899999999999999999888521 0112235678999999999988776422 33777
Q ss_pred EEcc
Q 043169 170 MHLA 173 (421)
Q Consensus 170 i~~A 173 (421)
|-+.
T Consensus 307 I~~t 310 (393)
T PRK10537 307 LALR 310 (393)
T ss_pred EEcC
Confidence 7543
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.17 Score=48.12 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC---HHHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND---AKLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~~~~~~~~~~ 165 (421)
.+.+|+|.|++|.+|..+++.+.+.|.+|+.++++.+. .+.. .. .++..+ .+..+ .+.+.+......
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~----~~~~-~~----~g~~~~-~~~~~~~~~~~i~~~~~~~~ 208 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAG----VAEL-RA----LGIGPV-VSTEQPGWQDKVREAAGGAP 208 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHH----HHHH-Hh----cCCCEE-EcCCCchHHHHHHHHhCCCC
Confidence 57899999999999999999999999999988774431 1111 11 122111 12222 233444444445
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
+|+|+++.|.
T Consensus 209 ~d~v~d~~g~ 218 (324)
T cd08292 209 ISVALDSVGG 218 (324)
T ss_pred CcEEEECCCC
Confidence 7999998873
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.12 Score=45.06 Aligned_cols=33 Identities=36% Similarity=0.653 Sum_probs=26.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|.|.| .|++|..+|..|++.|++|++++.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 6788997 59999999999999999999999854
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.052 Score=52.47 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=52.4
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+.||++.|.|. |-||+.+++.|..-|.+|++.+|+.... ...........+..+........++.+++++.
T Consensus 155 ~~l~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~a- 227 (347)
T PLN02928 155 DTLFGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSWTSE-----PEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEA- 227 (347)
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCCChh-----hhhhhccccccccccccccCcccCHHHHHhhC-
Confidence 3589999999996 9999999999999999999998853210 00000000001110000111345678888888
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
|+|+.+...
T Consensus 228 -DiVvl~lPl 236 (347)
T PLN02928 228 -DIVVLCCTL 236 (347)
T ss_pred -CEEEECCCC
Confidence 999988754
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.11 Score=52.65 Aligned_cols=76 Identities=25% Similarity=0.205 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.++++|+|.|+ |++|.++++.|.++|++|++++++.... .....+.....++.++..+-.. .. ..+|
T Consensus 14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~----~~~~~~~l~~~gv~~~~~~~~~------~~--~~~D 80 (480)
T PRK01438 14 WQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDER----HRALAAILEALGATVRLGPGPT------LP--EDTD 80 (480)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhh----hHHHHHHHHHcCCEEEECCCcc------cc--CCCC
Confidence 46789999997 9999999999999999999998654211 1111222334567776654322 11 2459
Q ss_pred EEEEccccc
Q 043169 168 HVMHLAAQA 176 (421)
Q Consensus 168 ~vi~~Ag~~ 176 (421)
.||-..|+.
T Consensus 81 ~Vv~s~Gi~ 89 (480)
T PRK01438 81 LVVTSPGWR 89 (480)
T ss_pred EEEECCCcC
Confidence 999998874
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.036 Score=46.98 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
++||+|+|.|.+..+|+.++..|.++|+.|.+...
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~ 68 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHS 68 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-T
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccC
Confidence 78999999999999999999999999999998764
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.038 Score=51.99 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=33.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDP 129 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 129 (421)
++|.|.|+ |.+|..++..|++.|++|++.+++.+..+.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~ 39 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQLES 39 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence 57899997 999999999999999999999997654443
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.25 Score=48.83 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=27.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC------cEEEEeCCC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD------GVVGLDNFN 124 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~------~V~~~~r~~ 124 (421)
+|+|.|+ |++|.++++.|+..|. +++++|.+.
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDN 38 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence 4789996 9999999999999997 788887644
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.19 Score=47.47 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+.+++|+|++|.+|..+++.+...|.+|+.++++.
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~ 179 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTS 179 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 567999999999999999999999999999998743
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.05 Score=52.27 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=48.7
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+.||+|.|.|. |.||+.+++.|...|.+|++.+|+... . . ... .++. ..++.+++++.
T Consensus 146 ~~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~---~---~-~~~---~~~~--------~~~l~ell~~a- 205 (333)
T PRK13243 146 YDVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKP---E---A-EKE---LGAE--------YRPLEELLRES- 205 (333)
T ss_pred cCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCCh---h---h-HHH---cCCE--------ecCHHHHHhhC-
Confidence 3589999999996 999999999999999999999885321 0 0 000 1111 12356677777
Q ss_pred CcEEEEccc
Q 043169 166 FTHVMHLAA 174 (421)
Q Consensus 166 ~d~vi~~Ag 174 (421)
|+|+.+.-
T Consensus 206 -DiV~l~lP 213 (333)
T PRK13243 206 -DFVSLHVP 213 (333)
T ss_pred -CEEEEeCC
Confidence 99988874
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.085 Score=49.38 Aligned_cols=37 Identities=32% Similarity=0.231 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNN 125 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~ 125 (421)
.++|+|+|.|+ ||.|++++..|++.|. +|++++|+.+
T Consensus 125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ 162 (283)
T PRK14027 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTS 162 (283)
T ss_pred cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 56899999997 9999999999999996 7889988554
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.17 Score=48.28 Aligned_cols=35 Identities=40% Similarity=0.492 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
.+.+|+|.|++|.+|..+++.+.+.|.+|++++++
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~ 179 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGS 179 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 57899999999999999999999999999998874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.093 Score=52.13 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+.||+|+|.|. |.||+.+++.+...|.+|++++++.
T Consensus 251 ~LaGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 251 MIAGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 368999999996 8999999999999999999988754
|
|
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.23 Score=47.06 Aligned_cols=99 Identities=22% Similarity=0.117 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~~ 165 (421)
.+.+|+|+|++|.+|..+++.+...|.+|+.++++.++ .+.... -++.. ..|..+. +.+.+...+..
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~-----~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~ 211 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAK-----TALVRA----LGADV-AVDYTRPDWPDQVREALGGGG 211 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHHH----cCCCE-EEecCCccHHHHHHHHcCCCC
Confidence 46789999999999999999999999999999874331 111111 12211 1222332 23334443335
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
+|+++++.|... ....++.+...| ++|.++..
T Consensus 212 ~d~vl~~~g~~~------------------~~~~~~~l~~~g---~~v~~g~~ 243 (324)
T cd08244 212 VTVVLDGVGGAI------------------GRAALALLAPGG---RFLTYGWA 243 (324)
T ss_pred ceEEEECCChHh------------------HHHHHHHhccCc---EEEEEecC
Confidence 799999876311 233455555554 88888754
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.094 Score=46.49 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
+++|+|+|.|| |-+|...++.|++.|++|+++.+
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcC
Confidence 68999999998 99999999999999999999875
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.29 Score=47.54 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhcc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAV 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~ 164 (421)
.+.+|+|.|+ |.+|..+++.+...|.+ |++++++.++ .+.. +. -+... ..|..+. +.+.+.....
T Consensus 176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~-----~~~~-~~---~Ga~~-~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRK-----LEWA-RE---FGATH-TVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHH-----HHHH-HH---cCCce-EEcCCCcCHHHHHHHHhCCC
Confidence 5789999985 99999999998889985 8888774321 1111 11 11111 1133322 3344444433
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
.+|+||.+.|.
T Consensus 245 g~d~vid~~g~ 255 (358)
T TIGR03451 245 GADVVIDAVGR 255 (358)
T ss_pred CCCEEEECCCC
Confidence 57999999873
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.13 Score=48.97 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
++|+|.|.|+ |-+|..++..|++.|++|.+.+|+.
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5688999985 9999999999999999999999853
|
|
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.18 Score=47.90 Aligned_cols=35 Identities=43% Similarity=0.423 Sum_probs=31.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
+.+|+|.|++|.+|..+++.+...|.+|++++++.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKE 181 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45899999999999999998888999999888754
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.065 Score=52.88 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
+.|++|+|.|. |.||+.+++.|...|.+|++.+++.
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 68999999996 9999999999999999999998854
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.3 Score=47.14 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCce-EEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGV-FVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+.+|+|+|+ |.+|..+++.+...|.+ |++++++.++ ... .+. -+. .++..+-.+.+.+.+...+..+
T Consensus 160 ~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~~~~-----~~~-~~~---~Ga~~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 160 EGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSEK-----LAL-AKS---LGAMQTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHH-----HHH-HHH---cCCceEecCcccCHHHHHHHhcCCCC
Confidence 5789999975 99999999999999997 5677663321 111 111 111 2222221223455555554456
Q ss_pred c-EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 167 T-HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 167 d-~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
| ++|.++|... .....+++++..| +++.++.
T Consensus 230 d~~v~d~~G~~~-----------------~~~~~~~~l~~~G---~iv~~G~ 261 (347)
T PRK10309 230 DQLILETAGVPQ-----------------TVELAIEIAGPRA---QLALVGT 261 (347)
T ss_pred CeEEEECCCCHH-----------------HHHHHHHHhhcCC---EEEEEcc
Confidence 7 8899887411 1234556666655 7887653
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.077 Score=49.74 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEe
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLD 121 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~ 121 (421)
.++||+|.|.|-++.+|..++..|+++|+.|++..
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 37899999999999999999999999999999985
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.19 Score=52.65 Aligned_cols=73 Identities=23% Similarity=0.230 Sum_probs=54.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
.++|+|.|+ |-+|+.+++.|.++|.++++++.+.+ +.+.....+..++.+|.+|++.++++--+ +.+.|
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~---------~v~~~~~~g~~v~~GDat~~~~L~~agi~-~A~~v 468 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPD---------HIETLRKFGMKVFYGDATRMDLLESAGAA-KAEVL 468 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHH---------HHHHHHhcCCeEEEEeCCCHHHHHhcCCC-cCCEE
Confidence 468999997 99999999999999999999998442 11222335788999999999987764322 34777
Q ss_pred EEcc
Q 043169 170 MHLA 173 (421)
Q Consensus 170 i~~A 173 (421)
|-+-
T Consensus 469 vv~~ 472 (621)
T PRK03562 469 INAI 472 (621)
T ss_pred EEEe
Confidence 7653
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.21 Score=45.68 Aligned_cols=93 Identities=15% Similarity=0.022 Sum_probs=70.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
.++|||.||| .=|+.|++.|.+.|++|++..-..... .....+.++.+-+.|.+.+.+++++.+++.|
T Consensus 2 ~~~IlvlgGT-~egr~la~~L~~~g~~v~~Svat~~g~-----------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~V 69 (248)
T PRK08057 2 MPRILLLGGT-SEARALARALAAAGVDIVLSLAGRTGG-----------PADLPGPVRVGGFGGAEGLAAYLREEGIDLV 69 (248)
T ss_pred CceEEEEech-HHHHHHHHHHHhCCCeEEEEEccCCCC-----------cccCCceEEECCCCCHHHHHHHHHHCCCCEE
Confidence 3679999985 579999999999999888766432111 1234677888998899999999999899999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCC
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~ 209 (421)
|...=+.. ..-+.++.++|++.+..
T Consensus 70 IDATHPfA---------------~~is~~a~~ac~~~~ip 94 (248)
T PRK08057 70 IDATHPYA---------------AQISANAAAACRALGIP 94 (248)
T ss_pred EECCCccH---------------HHHHHHHHHHHHHhCCc
Confidence 98653221 22367899999999863
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.23 Score=49.88 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+.+|+|+|+|+ |++|.++++.|+++|++|++.+...... ...+ .+. ...++.+..+...+ . .+.+ +|
T Consensus 3 ~~~~~~~v~G~-g~~G~~~a~~l~~~g~~v~~~d~~~~~~--~~~~--l~~-~~~gi~~~~g~~~~-~----~~~~--~d 69 (445)
T PRK04308 3 FQNKKILVAGL-GGTGISMIAYLRKNGAEVAAYDAELKPE--RVAQ--IGK-MFDGLVFYTGRLKD-A----LDNG--FD 69 (445)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCch--hHHH--Hhh-ccCCcEEEeCCCCH-H----HHhC--CC
Confidence 46789999997 6999999999999999999998754321 1111 110 11366666554332 1 2233 49
Q ss_pred EEEEccccc
Q 043169 168 HVMHLAAQA 176 (421)
Q Consensus 168 ~vi~~Ag~~ 176 (421)
.||...|+.
T Consensus 70 ~vv~spgi~ 78 (445)
T PRK04308 70 ILALSPGIS 78 (445)
T ss_pred EEEECCCCC
Confidence 999999985
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.054 Score=46.52 Aligned_cols=34 Identities=38% Similarity=0.353 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
....+|+|+|+ |-+|...++.|.+.|++|+..+.
T Consensus 18 ~~p~~vvv~G~-G~vg~gA~~~~~~lGa~v~~~d~ 51 (168)
T PF01262_consen 18 VPPAKVVVTGA-GRVGQGAAEIAKGLGAEVVVPDE 51 (168)
T ss_dssp E-T-EEEEEST-SHHHHHHHHHHHHTT-EEEEEES
T ss_pred CCCeEEEEECC-CHHHHHHHHHHhHCCCEEEeccC
Confidence 45679999995 99999999999999999999987
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.062 Score=52.44 Aligned_cols=78 Identities=19% Similarity=0.095 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHH--HHHHhhcc-
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKL--LAKLFDAV- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~--~~~~~~~~- 164 (421)
.+-+|||.|| ||||-+|.+.|+..|+ +|.+++-+.=... ....++.|.+-|+..+.+ ..++++.+
T Consensus 11 ~~~riLvVGa-GGIGCELLKnLal~gf~~IhiIDlDTIDlS----------NLNRQFLFrkkhVgqsKA~vA~~~v~~Fn 79 (603)
T KOG2013|consen 11 KSGRILVVGA-GGIGCELLKNLALTGFEEIHIIDLDTIDLS----------NLNRQFLFRKKHVGQSKATVAAKAVKQFN 79 (603)
T ss_pred ccCeEEEEec-CcccHHHHHHHHHhcCCeeEEEeccceecc----------chhhhheeehhhcCchHHHHHHHHHHHhC
Confidence 4568999997 9999999999999997 5777765331110 011234455556654432 22333333
Q ss_pred -CCcEEEEcccccC
Q 043169 165 -AFTHVMHLAAQAG 177 (421)
Q Consensus 165 -~~d~vi~~Ag~~~ 177 (421)
+.+++-..|.++.
T Consensus 80 pn~~l~~yhanI~e 93 (603)
T KOG2013|consen 80 PNIKLVPYHANIKE 93 (603)
T ss_pred CCCceEeccccccC
Confidence 3466666666544
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.091 Score=49.41 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=32.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDP 129 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 129 (421)
++|.|.|+ |.+|..++..|++.|++|++.+++.+..+.
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l~~ 41 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISDEALEK 41 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 57999986 999999999999999999999997654433
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.38 Score=46.56 Aligned_cols=105 Identities=12% Similarity=0.033 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC------CCC-----Chh------HHHHHHHhh--cCCceEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN------NYY-----DPS------LKKARKALL--NNHGVFVI 147 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~------~~~-----~~~------~~~~~~~~~--~~~~v~~~ 147 (421)
+++.+|+|.|+ ||+|+.++..|++.|. +++++|.+. .+. ... +-+...... -..++..+
T Consensus 174 L~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~ 252 (393)
T PRK06153 174 LEGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPH 252 (393)
T ss_pred HhhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEE
Confidence 67889999997 9999999999999995 677777642 000 000 000011111 12356666
Q ss_pred EcccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 148 ~~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
...+ +++.+. .+.++ |+||-|.- |..+-..+.++|.+.++ -+|.++
T Consensus 253 ~~~I-~~~n~~-~L~~~--DiV~dcvD-----------------n~~aR~~ln~~a~~~gI--P~Id~G 298 (393)
T PRK06153 253 PEYI-DEDNVD-ELDGF--TFVFVCVD-----------------KGSSRKLIVDYLEALGI--PFIDVG 298 (393)
T ss_pred eecC-CHHHHH-HhcCC--CEEEEcCC-----------------CHHHHHHHHHHHHHcCC--CEEEee
Confidence 6666 455554 45555 99998864 33334556677777775 455544
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.22 Score=48.20 Aligned_cols=34 Identities=35% Similarity=0.377 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
.+.+|+|+|+ |.+|...++.+...|++|++++|+
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Confidence 6789999986 999999999888889999999874
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.081 Score=49.28 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNY 126 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~ 126 (421)
...+++|+|.|+ ||.+++++..|++.| .+|+++.|+.++
T Consensus 123 ~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~r 162 (283)
T COG0169 123 DVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRER 162 (283)
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 346899999997 999999999999999 579999996543
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.061 Score=49.97 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=47.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
++.||+|+|.|.+..+|+-++..|.++|+.|+++.+.. ..+.+..+++
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------------------------~~l~~~~~~A-- 203 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------------------------KNLRHHVRNA-- 203 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------------------------CCHHHHHhhC--
Confidence 47899999999999999999999999999999886521 1245556666
Q ss_pred cEEEEccccc
Q 043169 167 THVMHLAAQA 176 (421)
Q Consensus 167 d~vi~~Ag~~ 176 (421)
|+||..+|..
T Consensus 204 DIvi~avG~p 213 (285)
T PRK10792 204 DLLVVAVGKP 213 (285)
T ss_pred CEEEEcCCCc
Confidence 9999998864
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.09 Score=49.72 Aligned_cols=66 Identities=17% Similarity=0.094 Sum_probs=48.1
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+.||+|.|.|- |-||+.+++.|..-|.+|++.+|+... .++... ..+++++++++
T Consensus 118 ~~L~gktvgIiG~-G~IG~~vA~~l~afG~~V~~~~r~~~~---------------~~~~~~------~~~l~ell~~a- 174 (303)
T PRK06436 118 KLLYNKSLGILGY-GGIGRRVALLAKAFGMNIYAYTRSYVN---------------DGISSI------YMEPEDIMKKS- 174 (303)
T ss_pred CCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcc---------------cCcccc------cCCHHHHHhhC-
Confidence 4589999999995 999999999888889999999984210 111100 12466777777
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
|+|+.+...
T Consensus 175 -Div~~~lp~ 183 (303)
T PRK06436 175 -DFVLISLPL 183 (303)
T ss_pred -CEEEECCCC
Confidence 998887754
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.088 Score=45.82 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-HHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-AKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~ 165 (421)
+++||+|+|.|-|.-+|+-++..|+++|+.|++++.+.-..-. ......--.....| ...+.+.++++
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~----------~~~~~~hs~t~~~~~~~~l~~~~~~A- 127 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT----------RGESIRHEKHHVTDEEAMTLDCLSQS- 127 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc----------cccccccccccccchhhHHHHHhhhC-
Confidence 3799999999999999999999999999999988643211100 00000000011112 22466777777
Q ss_pred CcEEEEcccccC
Q 043169 166 FTHVMHLAAQAG 177 (421)
Q Consensus 166 ~d~vi~~Ag~~~ 177 (421)
|+||-.+|...
T Consensus 128 -DIVIsAvG~~~ 138 (197)
T cd01079 128 -DVVITGVPSPN 138 (197)
T ss_pred -CEEEEccCCCC
Confidence 99999988644
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.089 Score=51.39 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=48.7
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+.||+|.|.|. |-||+.+++.|..-|.+|++.+|+....+ .. ...++.+ .++++++++++
T Consensus 195 ~~L~gktVGIVG~-G~IG~~vA~~L~afG~~V~~~d~~~~~~~------~~---~~~g~~~-------~~~l~ell~~s- 256 (386)
T PLN03139 195 YDLEGKTVGTVGA-GRIGRLLLQRLKPFNCNLLYHDRLKMDPE------LE---KETGAKF-------EEDLDAMLPKC- 256 (386)
T ss_pred cCCCCCEEEEEee-cHHHHHHHHHHHHCCCEEEEECCCCcchh------hH---hhcCcee-------cCCHHHHHhhC-
Confidence 4589999999994 99999999999999999999887432110 00 0112211 12466777777
Q ss_pred CcEEEEccc
Q 043169 166 FTHVMHLAA 174 (421)
Q Consensus 166 ~d~vi~~Ag 174 (421)
|+|+.+.-
T Consensus 257 -DvV~l~lP 264 (386)
T PLN03139 257 -DVVVINTP 264 (386)
T ss_pred -CEEEEeCC
Confidence 99888753
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.3 Score=47.47 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.+.+|+|.|+ |.||..+++.+...|.+|++++.+.++..... .+ -+...+ .|..+.+.+.+... .+|+
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~----~~----~Ga~~v-i~~~~~~~~~~~~~--~~D~ 250 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI----NR----LGADSF-LVSTDPEKMKAAIG--TMDY 250 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH----Hh----CCCcEE-EcCCCHHHHHhhcC--CCCE
Confidence 5789999775 99999999999899999988876543221111 11 122111 13333344555443 3599
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
||.+.|... .....++.++..| ++|.++.
T Consensus 251 vid~~g~~~-----------------~~~~~~~~l~~~G---~iv~vG~ 279 (360)
T PLN02586 251 IIDTVSAVH-----------------ALGPLLGLLKVNG---KLITLGL 279 (360)
T ss_pred EEECCCCHH-----------------HHHHHHHHhcCCc---EEEEeCC
Confidence 999887311 1223455555555 8887753
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.041 Score=55.55 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
..++|+++|+|+ |++|++++..|++.|++|++.+|+.
T Consensus 329 ~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~ 365 (477)
T PRK09310 329 PLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTK 365 (477)
T ss_pred CcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899999996 8999999999999999999988853
|
|
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.32 Score=45.83 Aligned_cols=36 Identities=36% Similarity=0.374 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+.+|+|+|++|.+|..+++.+...|.+|+.++++.
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~ 174 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSE 174 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCH
Confidence 578999999999999999999999999999998754
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.092 Score=52.29 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=49.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+.+++|+|.|+ |.+|..+++.|...|. +|++++|+.++. .... ... +. +..+.+++.+.+.++
T Consensus 179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra----~~la-~~~---g~-----~~~~~~~~~~~l~~a- 243 (423)
T PRK00045 179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERA----EELA-EEF---GG-----EAIPLDELPEALAEA- 243 (423)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHH----HHHH-HHc---CC-----cEeeHHHHHHHhccC-
Confidence 367899999997 9999999999999997 788888843211 1111 111 11 222335566666666
Q ss_pred CcEEEEccccc
Q 043169 166 FTHVMHLAAQA 176 (421)
Q Consensus 166 ~d~vi~~Ag~~ 176 (421)
|+||.+.+..
T Consensus 244 -DvVI~aT~s~ 253 (423)
T PRK00045 244 -DIVISSTGAP 253 (423)
T ss_pred -CEEEECCCCC
Confidence 9999987643
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.25 Score=45.82 Aligned_cols=105 Identities=23% Similarity=0.238 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
..|.+|+|+||+|-+|+-..+...-+|.+|++++-+.++. +...........+ |-.+. ++.+.+++.
T Consensus 149 k~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~----~~l~~~lGfD~~i-----dyk~~-d~~~~L~~a~P~ 218 (340)
T COG2130 149 KAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKC----DFLTEELGFDAGI-----DYKAE-DFAQALKEACPK 218 (340)
T ss_pred CCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHH----HHHHHhcCCceee-----ecCcc-cHHHHHHHHCCC
Confidence 4699999999999999988776666799999998743211 1111111111222 22222 233333332
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHh-cCCCCeEEEEccccccCCC
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKS-ANPQPSIVWASSSSVYGLN 224 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~-~~~~~riV~~SS~~v~g~~ 224 (421)
.+|+.|-|.|- .+++++.. -+...||+.+.-.+.|+..
T Consensus 219 GIDvyfeNVGg----------------------~v~DAv~~~ln~~aRi~~CG~IS~YN~~ 257 (340)
T COG2130 219 GIDVYFENVGG----------------------EVLDAVLPLLNLFARIPVCGAISQYNAP 257 (340)
T ss_pred CeEEEEEcCCc----------------------hHHHHHHHhhccccceeeeeehhhcCCC
Confidence 46999999873 23333321 1223399999988888643
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.14 Score=49.49 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=28.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNF 123 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~ 123 (421)
++|.|+|++|++|+++++.|..++ .+|..++.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~ 34 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVAS 34 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEC
Confidence 478999999999999999998876 688877543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.32 Score=46.65 Aligned_cols=37 Identities=24% Similarity=0.143 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.+.+|+|.|++|.+|..+++.+...|.+|++++++.+
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~ 182 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRP 182 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 5789999999999999999999999999999887543
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.4 Score=46.93 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.+.+|+|.|+ |.+|..+++.+...|++|++++++.++. . ...+. -++..+ .|..+.+.+.+... .+|+
T Consensus 178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~----~-~~a~~---lGa~~~-i~~~~~~~v~~~~~--~~D~ 245 (375)
T PLN02178 178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKE----R-EAIDR---LGADSF-LVTTDSQKMKEAVG--TMDF 245 (375)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHh----H-HHHHh---CCCcEE-EcCcCHHHHHHhhC--CCcE
Confidence 5789999986 9999999999999999999887743211 0 11111 122211 23333445555443 4699
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
||.++|... .....++.++..| +++.++.
T Consensus 246 vid~~G~~~-----------------~~~~~~~~l~~~G---~iv~vG~ 274 (375)
T PLN02178 246 IIDTVSAEH-----------------ALLPLFSLLKVSG---KLVALGL 274 (375)
T ss_pred EEECCCcHH-----------------HHHHHHHhhcCCC---EEEEEcc
Confidence 999987311 1234555555554 8887763
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.08 Score=51.80 Aligned_cols=67 Identities=22% Similarity=0.220 Sum_probs=51.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+|+|.|| |.+|..++..+.+.|++|++++.+.+.. .. ... -..+.+|..|.+.+.++++.+ |+|
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~p--a~------~~a---d~~~~~~~~D~~~l~~~a~~~--dvi 67 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSP--AA------QVA---DEVIVADYDDVAALRELAEQC--DVI 67 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCc--hh------HhC---ceEEecCCCCHHHHHHHHhcC--CEE
Confidence 478999998 8999999999999999999998754321 10 001 135567899999999999877 876
Q ss_pred E
Q 043169 170 M 170 (421)
Q Consensus 170 i 170 (421)
.
T Consensus 68 t 68 (372)
T PRK06019 68 T 68 (372)
T ss_pred E
Confidence 4
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 421 | ||||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 2e-28 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 5e-28 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 5e-28 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 5e-28 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 7e-28 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 3e-24 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 3e-24 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 6e-24 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 1e-23 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 3e-23 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 3e-23 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 5e-22 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 6e-22 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 1e-21 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-21 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-21 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-21 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 4e-21 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-21 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 6e-21 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 1e-20 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 1e-20 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 3e-20 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 4e-19 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 7e-19 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 2e-18 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 7e-18 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 2e-17 | ||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 4e-17 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 4e-17 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 4e-17 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 1e-16 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 3e-16 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 3e-16 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 1e-15 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 2e-15 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 3e-15 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 3e-14 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-13 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-13 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 2e-13 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 3e-13 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 1e-12 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 4e-12 | ||
| 3m2p_A | 311 | The Crystal Structure Of Udp-N-Acetylglucosamine 4- | 8e-11 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 2e-09 | ||
| 1rkx_A | 357 | Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose | 6e-09 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 7e-09 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 3e-08 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 3e-08 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 3e-08 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 4e-08 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 5e-08 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 9e-08 | ||
| 1eq2_A | 310 | The Crystal Structure Of Adp-L-Glycero-D-Mannohepto | 1e-07 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 1e-07 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 3e-07 | ||
| 2z1m_A | 345 | Crystal Structure Of Gdp-D-Mannose Dehydratase From | 3e-07 | ||
| 2x6t_A | 357 | Agme Bound To Adp-B-Mannose Length = 357 | 5e-07 | ||
| 4id9_A | 347 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 2e-06 | ||
| 1n7g_A | 381 | Crystal Structure Of The Gdp-mannose 4,6-dehydratas | 3e-06 | ||
| 1wvg_A | 359 | Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal | 4e-06 | ||
| 1rpn_A | 335 | Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase | 4e-06 | ||
| 1i24_A | 404 | High Resolution Crystal Structure Of The Wild-Type | 3e-05 | ||
| 1i2b_A | 404 | Crystal Structure Of Mutant T145a Sqd1 Protein Comp | 3e-05 | ||
| 1qrr_A | 394 | Crystal Structure Of Sqd1 Protein Complex With Nad | 7e-05 | ||
| 2zkl_A | 369 | Crystal Structure Of Capsular Polysaccharide Assemb | 9e-05 | ||
| 3ay3_A | 267 | Crystal Structure Of Glucuronic Acid Dehydrogeanse | 1e-04 | ||
| 2yy7_A | 312 | Crystal Structure Of Thermolabile L-Threonine Dehyd | 3e-04 | ||
| 3st7_A | 369 | Crystal Structure Of Capsular Polysaccharide Assemb | 5e-04 |
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6- Dehydratase From Yersinia Pseudotuberculosis Length = 357 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6- Epimerase Length = 310 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From Aquifex Aeolicus Vf5 Length = 345 | Back alignment and structure |
|
| >pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose Length = 357 | Back alignment and structure |
|
| >pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SUPERFAMILY Protein From Agrobacterium Tumefaciens (Target Efi-506441) With Bound Nad, Monoclinic Form 1 Length = 347 | Back alignment and structure |
|
| >pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase Ternary Complex With Nadph And Gdp-rhamnose. Length = 381 | Back alignment and structure |
|
| >pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359 | Back alignment and structure |
|
| >pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In Complexes With Gdp And Nadph Length = 335 | Back alignment and structure |
|
| >pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein Sqd1, With Nad And Udp-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex With Nad And Udp-SulfoquinovoseUDP-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And Udp- Glucose Length = 394 | Back alignment and structure |
|
| >pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling Protein Capf From Staphylococcus Aureus Length = 369 | Back alignment and structure |
|
| >pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From Chromohalobacter Salexigens Length = 267 | Back alignment and structure |
|
| >pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine Dehydrogenase From Flavobacterium Frigidimaris Kuc-1 Length = 312 | Back alignment and structure |
|
| >pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling Protein Capf From Staphylococcus Aureus Length = 369 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 421 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 1e-138 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 1e-131 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-117 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 1e-110 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 1e-108 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 1e-107 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 5e-94 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 8e-92 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 5e-84 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 5e-77 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 4e-75 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 1e-71 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 3e-70 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 3e-70 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 6e-70 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 3e-64 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 2e-62 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 7e-61 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 1e-50 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 2e-49 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 1e-48 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 1e-46 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 1e-46 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 7e-43 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 8e-40 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 3e-39 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 5e-39 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 8e-38 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 2e-37 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 2e-36 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 4e-36 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 3e-32 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 3e-31 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 7e-29 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 2e-27 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 4e-27 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 3e-26 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 4e-25 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 6e-25 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 2e-24 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 2e-22 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 1e-20 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 3e-18 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 1e-13 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 2e-12 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 4e-11 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 2e-09 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 2e-09 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 2e-09 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 2e-09 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 3e-09 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 1e-08 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 2e-08 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 2e-08 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 2e-08 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 2e-08 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 6e-08 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 1e-07 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 1e-07 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 3e-07 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 2e-06 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 2e-06 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 2e-06 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 2e-06 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 3e-06 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 4e-06 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 4e-06 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 7e-06 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 8e-06 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 9e-06 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 2e-05 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 2e-05 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 4e-05 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 5e-05 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 6e-05 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 9e-05 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 9e-05 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 2e-04 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 3e-04 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 398 bits (1024), Expect = e-138
Identities = 96/332 (28%), Positives = 157/332 (47%), Gaps = 22/332 (6%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARK--ALLNNHGVFVIEGD 150
L+TG AGF+G+++ L K V+GLDNF+ + +L + + + IEGD
Sbjct: 28 WLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGD 87
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I D ++ HV+H AA V ++ +P + +NI G + +L A K+A Q
Sbjct: 88 IRDLTTCEQVMKG--VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ- 144
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
S +A+SSS YG + +P E + P S YA TK E A Y YG GLR+F
Sbjct: 145 SFTYAASSSTYGDHPALPKVE-ENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYF 203
Query: 271 TVYGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326
V+G P+ AY + +T +L+G + + + +RDF YID++++ + S
Sbjct: 204 NVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYIN---GDGETSRDFCYIDNVIQMNILSA- 259
Query: 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKV-----KAKKNVIEM-PGNGDVPFTHA 380
+ A I+N+ T+ +L + L + K E GDV + A
Sbjct: 260 LAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRS--GDVRHSQA 317
Query: 381 NISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
+++ A YRP ++ GL+ + WY+ +
Sbjct: 318 DVTKAIDLLKYRPNIKIREGLRLSMPWYVRFL 349
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 380 bits (977), Expect = e-131
Identities = 98/330 (29%), Positives = 156/330 (47%), Gaps = 18/330 (5%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARK--ALLNNHGVFVIEGD 150
L+TG AGF+G+++ L K VVGLDNF + +L + R + I+GD
Sbjct: 30 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGD 89
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + V +V+H AA V ++ +P + +NI G + +L A + A Q
Sbjct: 90 IRNLDDCNNACAGV--DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ- 146
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
S +A+SSS YG + +P E D +P S YA TK E A ++ YG S GLR+F
Sbjct: 147 SFTYAASSSTYGDHPGLPKVE-DTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYF 205
Query: 271 TVYGPWGRPDMAY----FSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326
V+G P+ AY +T +++QG + + + +RDF YI++ V+ L +
Sbjct: 206 NVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQANLLAA- 261
Query: 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM----PGNGDVPFTHANI 382
T+ A +++N+ ++ +L L L E GDV + A+I
Sbjct: 262 TAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADI 321
Query: 383 SSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
S A K GY P D+ G+ + WY+ +
Sbjct: 322 SKAAKLLGYAPKYDVSAGVALAMPWYIMFL 351
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 343 bits (881), Expect = e-117
Identities = 75/342 (21%), Positives = 136/342 (39%), Gaps = 36/342 (10%)
Query: 78 HVRSSAQIHRSGG--MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKAR 135
H S+ + G V +TG G +G+H++ L +RGD VVG+DNF R
Sbjct: 7 HHHHSSGLVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGR-------R 59
Query: 136 KALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVH---SN 192
+ L ++ + +EG I D L+ +L + V+H AA ++P + + +N
Sbjct: 60 EHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS------YKDPDDWYNDTLTN 113
Query: 193 IAGLVTLLEACKSANPQPSIVWASSSSVYGLN-ENVPFSEADRTDQPASLYAATKKAGEE 251
G +++A K N V+ ++ YG+ P + S YA +K A E
Sbjct: 114 CVGGSNVVQAAKKNNVG-RFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANE- 171
Query: 252 IAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311
Y GL R V GP F + + +GK V K RDF
Sbjct: 172 ---DYLEYSGLDFVTFRLANVVGPRNVSGP-LPIFFQRLSEGKKCFV--TKA----RRDF 221
Query: 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG 371
++ D+ + + ++D + ++ + + V + +L + + + + +
Sbjct: 222 VFVKDLARATVRAVDG----VGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIREL 277
Query: 372 N-GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
D P + S ++FG T L+ + V ++ Y
Sbjct: 278 GPDDAPSILLDPSRTIQDFGKIEFTPLKETVAAAVAYFREYG 319
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 326 bits (839), Expect = e-110
Identities = 79/321 (24%), Positives = 130/321 (40%), Gaps = 29/321 (9%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVF-VIEG 149
+L+TG AGF+G H++ AL G+ V LD+ P + V + E
Sbjct: 8 HRILITGGAGFIGGHLARALVASGEEVTVLDDLR--VPPMIPPEGTGKFLEKPVLELEER 65
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
D++D V HLA+ V + + P Y N+ LL C S
Sbjct: 66 DLSD-------VRLV-----YHLASHKSVPRSFKQPLDY-LDNVDSGRHLLALCTSVGVP 112
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGL-SITGLR 268
+V S+ VYG + +P E D P S YAA+K E +A + + +R
Sbjct: 113 -KVVVGSTCEVYGQADTLPTPE-DSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVR 170
Query: 269 FFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328
FF VYGP RPD N+L + V + RDFTYI D+V + +
Sbjct: 171 FFNVYGPGERPDALVPRLCANLLTRNELPVE---GDGEQRRDFTYITDVVDKLVALANRP 227
Query: 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKE 388
+ N G+ ++V ++ IL+ A+ + ++ A+ + ++
Sbjct: 228 LP----SVVNFGSGQSLSVNDVIRILQATSP-AAEVARKQPR-PNEITEFRADTALQTRQ 281
Query: 389 FGYRP-TTDLQTGLKKFVRWY 408
G R ++ G++ + W+
Sbjct: 282 IGERSGGIGIEEGIRLTLEWW 302
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 321 bits (824), Expect = e-108
Identities = 63/327 (19%), Positives = 131/327 (40%), Gaps = 27/327 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+L+ GA G +GT ++ L+K + G +N ++K ++N+ G F +
Sbjct: 3 PKILIIGACGQIGTELTQKLRK----LYGTENVIASD---IRKLNTDVVNS-GPF-EVVN 53
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
D + L + T + +AA +NP N+ L +L K+ +
Sbjct: 54 ALDFNQIEHLVEVHKITDIYLMAALLSATA-EKNPAFAWDLNMNSLFHVLNLAKAKKIK- 111
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
I W SS +V+G + +P+++Y +K+AGE Y++IYG+ + +R+
Sbjct: 112 KIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYP 171
Query: 271 TVYGP-----WGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325
+ G D A F + + K + + Y+DD + + +
Sbjct: 172 GLISWSTPPGGGTTDYAVDIFYK-AIADKKYECF---LSSETKMPMMYMDDAIDATINIM 227
Query: 326 DTSAGP-APYRIFNLGNTSPVTVPKLVNILERH---LKVKAKKNVIEMPGNGDVPFTHAN 381
+ +NL S T ++ N +++H + + + + D +
Sbjct: 228 KAPVEKIKIHSSYNLAAMS-FTPTEIANEIKKHIPEFTITYEPDFRQKI--ADSWPASID 284
Query: 382 ISSAQKEFGYRPTTDLQTGLKKFVRWY 408
S A++++ ++ T DL++ K +
Sbjct: 285 DSQAREDWDWKHTFDLESMTKDMIEHL 311
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 317 bits (815), Expect = e-107
Identities = 72/333 (21%), Positives = 127/333 (38%), Gaps = 39/333 (11%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+ + VTG GF+G +V ++K G+ + L + D
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNK------------AINDYEYRVSD 50
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
L+ +L D V+HLAA G + + H N L +AC N
Sbjct: 51 YTLEDLINQLND---VDAVVHLAATRGSQGKISEFHD----NEILTQNLYDACYENNIS- 102
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+IV+AS+ S Y ++P++E P +Y +K A E I + Y+ GL I LRF
Sbjct: 103 NIVYASTISAYSDETSLPWNE-KELPLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVY-RGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329
+YG + + F R G+ +T++ R+F Y D K + +L
Sbjct: 162 HLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVA----KREFLYAKDAAKSVIYALKQ-- 215
Query: 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEF 389
FN+G+ +T ++ N + K V N + ++ + S A++
Sbjct: 216 -EKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELL 274
Query: 390 GYRPTTDLQTGLKK----------FVRWYLSYY 412
+ + T +++ WY ++
Sbjct: 275 DFSTDYNFATAVEEIHLLMRGLDDVPLWYEGHH 307
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 284 bits (729), Expect = 5e-94
Identities = 83/327 (25%), Positives = 141/327 (43%), Gaps = 28/327 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M ++VTG AGF+G+H+ L + G VV +DN ++ R+ + N + D
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGR-------REFV--NPSAELHVRD 51
Query: 151 INDAKLLAKL-FDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
+ D A + D V H AA VR + P + + N+ +LE + +
Sbjct: 52 LKDYSWGAGIKGDVV-----FHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR 106
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
++V+ASSS+VYG + +P E + P S+Y A K AGE + TY ++G+ +R+
Sbjct: 107 -TVVFASSSTVYGDADVIPTPEEEPYK-PISVYGAAKAAGEVMCATYARLFGVRCLAVRY 164
Query: 270 FTVYGPWGRPDMAYFSFTRNILQGKPITVY-RGKNHVDLARDFTYIDDIVKGCLGSLDT- 327
V GP R + Y + + V G + + Y+ D V+ L +
Sbjct: 165 ANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQ----RKSYLYVRDAVEATLAAWKKF 220
Query: 328 SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN-----GDVPFTHANI 382
AP+ N+GN V V + I+ L ++ + ++ + GDV + +
Sbjct: 221 EEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAV 280
Query: 383 SSAQKEFGYRPTTDLQTGLKKFVRWYL 409
+ K G+RPT +KK
Sbjct: 281 TKLMKLTGWRPTMTSAEAVKKTAEDLA 307
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 280 bits (719), Expect = 8e-92
Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 27/339 (7%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNN-YYDPSLKKARKALLNNHGVF- 145
++L+TG AGFVG++++ ++ VV LD F + + + + N F
Sbjct: 10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFK 69
Query: 146 --VIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
VI DIN+ L +L F ++ H AA + M N + +N + LLE
Sbjct: 70 GEVIAADINNPLDLRRLEKL-HFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEIA 126
Query: 204 KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLS 263
+S + +++ASS+ VYG N P + + P ++Y +K +E +++
Sbjct: 127 RSKKAK--VIYASSAGVYG-NTKAPNVV-GKNESPENVYGFSKLCMDEFVLSHS--NDNV 180
Query: 264 ITGLRFFTVYGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK 319
GLR+F VYGP S + K + ++ RDF YI+D+++
Sbjct: 181 QVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQ---LRDFVYIEDVIQ 237
Query: 320 GCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTH 379
+ ++ ++N+G + + ++V+IL+ HL K I+ P T
Sbjct: 238 ANVKAMKAQKS----GVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQ 292
Query: 380 ANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGK 418
A+I + Y P DL++G+K ++ + + R K
Sbjct: 293 AHIEPTILDLDYTPLYDLESGIKDYLPHIHAIFKGQRAK 331
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 5e-84
Identities = 80/324 (24%), Positives = 137/324 (42%), Gaps = 30/324 (9%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
++VTG AGF+G+HV L + + +V +DN ++ + + N +++ D
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLSESNE-IVVIDNLSSGN-------EEFV--NEAARLVKAD 51
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ + L V H+AA VR +NP +N+ LLEA + A
Sbjct: 52 LAADDIKDYLKG---AEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS- 107
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
IV+ S+S+VYG + +P E T P SLY A+K A E + +Y H + + RF
Sbjct: 108 RIVFTSTSTVYGEAKVIPTPEDYPTH-PISLYGASKLACEALIESYCHTFDMQAWIYRFA 166
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVY-RGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329
V G + Y + + + + G+ + + YI D V L L
Sbjct: 167 NVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQ----NKSYIYISDCVDAMLFGLRG-- 220
Query: 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN----GDVPFTHANISSA 385
IFN+G+ + V ++ I+ L + + G+ GDVP +I
Sbjct: 221 -DERVNIFNIGSEDQIKVKRIAEIVCEELGLSPR--FRFTGGDRGWKGDVPVMLLSIEKL 277
Query: 386 QKEFGYRPTTDLQTGLKKFVRWYL 409
K G++P + + ++ VR +
Sbjct: 278 -KRLGWKPRYNSEEAVRMAVRDLV 300
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 5e-77
Identities = 54/328 (16%), Positives = 112/328 (34%), Gaps = 26/328 (7%)
Query: 93 VLVTGAAGFVGTHVSLAL-KKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
+LVTG++G +GT + L +K G V + +K I D+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIK-------------FITLDV 48
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
++ + + + + + HLA + ++P N+ G +LEA K
Sbjct: 49 SNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRV-EK 106
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
+V S+ V+G + +P +++ TK A E + Y +GL + LR+
Sbjct: 107 VVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPG 166
Query: 272 VYGPWGRPDMAYFSFT----RNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327
+ P + ++ + Y + A Y+ D +K + +
Sbjct: 167 IISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAP---NRALPMMYMPDALKALVDLYEA 223
Query: 328 -SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN-GDVPFTHANISSA 385
+N+ + T +L + ++ + + + + S A
Sbjct: 224 DRDKLVLRNGYNVTAYT-FTPSELYSKIKERIPEFEIEYKEDFRDKIAATWPESLDSSEA 282
Query: 386 QKEFGYRPTTDLQTGLKKFVRWYLSYYG 413
E+G+ DL + + G
Sbjct: 283 SNEWGFSIEYDLDRTIDDMIDHISEKLG 310
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 4e-75
Identities = 69/342 (20%), Positives = 130/342 (38%), Gaps = 38/342 (11%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIE 148
+V+V G AGFVG+++ L + G + V +DN + + + ++ V E
Sbjct: 32 NTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAE-------KINVPDHPAVRFSE 84
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
I D LLA L D + V HLA G + ++ +P + +N + L E K
Sbjct: 85 TSITDDALLASLQDEYDY--VFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKR 142
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTD-----QPASLYAATKKAGEEIAHTYNHIYGLS 263
+V++++ + TD S Y+ +K GE + Y+ + L
Sbjct: 143 LKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLP 202
Query: 264 ITGLRFFTVYGPWGRPDMAYFS-------------FTRNILQGKPITVY-RGKNHVDLAR 309
RF VYGP + F L+G P+ + G R
Sbjct: 203 TVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVA----TR 258
Query: 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK-KNVIE 368
DF +++D+ G + P ++N+ + ++ L + + + +
Sbjct: 259 DFIFVEDVANGLIACAAD---GTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPK 315
Query: 369 MPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
P + + + A++E G+ + GL+K + W +
Sbjct: 316 RPWD-NSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKA 356
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 1e-71
Identities = 65/326 (19%), Positives = 122/326 (37%), Gaps = 31/326 (9%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
++VTG AGF+G+++ AL +G ++ +DN + K + N ++ + D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG-----TKFVNLVDLNIADYMDKEDF 56
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
+ + F V + H A + + +N LL C
Sbjct: 57 LIQIMAGEEFGDV--EAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLEREIP-- 110
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
++ASS++ YG + + +P ++Y +K +E I G R+F
Sbjct: 111 FLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFN 169
Query: 272 VYGPWGRPDMAY----FSFTRNILQGKPITVYRGKNHVD--LARDFTYIDDIVKGCLGSL 325
VYGP + F + G+ ++ G RDF Y+ D+ L L
Sbjct: 170 VYGPREGHKGSMASVAFHLNTQLNNGESPKLFEG----SENFKRDFVYVGDVADVNLWFL 225
Query: 326 DTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG---NGDVPFTHANI 382
+ IFNLG + + + + K K + I P FT A++
Sbjct: 226 ENGVS----GIFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRYQAFTQADL 280
Query: 383 SSAQKEFGYRPTTDLQTGLKKFVRWY 408
++ + +P + G+ +++ W
Sbjct: 281 TNLRAAGYDKPFKTVAEGVTEYMAWL 306
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 3e-70
Identities = 68/350 (19%), Positives = 130/350 (37%), Gaps = 36/350 (10%)
Query: 74 QWEKHVRSSAQIHRSGGMS-----VLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYY 127
++E+ S + GG ++VTG AGF+G+++ AL +G ++ +DN +
Sbjct: 25 KFERQHMDSPDLGTGGGSGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG- 83
Query: 128 DPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHS 187
K + N ++ + D + + F V + H A +
Sbjct: 84 ----TKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDV--EAIFHEGACSSTTEWDGKY-- 135
Query: 188 YVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKK 247
+ +N LL C ++ASS++ YG + + +P +++ +K
Sbjct: 136 MMDNNYQYSKELLHYCLEREIP--FLYASSAATYGGRTSDFIESREYE-KPLNVFGYSKF 192
Query: 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAY----FSFTRNILQGKPITVYRGKN 303
+E I G R+F VYGP + F + G+ ++ G
Sbjct: 193 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEG-- 250
Query: 304 HVD--LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVK 361
RDF Y+ D+ L L+ IFNLG + + + + K K
Sbjct: 251 --SENFKRDFVYVGDVADVNLWFLENGVS----GIFNLGTGRAESFQAVADATLAYHK-K 303
Query: 362 AKKNVIEMPGN---GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+ I P FT A++++ + +P + G+ +++ W
Sbjct: 304 GQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 353
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 3e-70
Identities = 95/330 (28%), Positives = 144/330 (43%), Gaps = 35/330 (10%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG AGF+G+H+ L RG V LDN R+ + GV D
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGK-------RENV--PKGVPFFRVD 51
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D + + + F THV H AAQA V+ ++++P N+ G + LLEAC+
Sbjct: 52 LRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGV-E 110
Query: 211 SIVWASSS-SVYGLN-ENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
+V+AS+ ++YG E E +P S YAA+K A E Y YGL LR
Sbjct: 111 KLVFASTGGAIYGEVPEGERAEETWPP-RPKSPYAASKAAFEHYLSVYGQSYGLKWVSLR 169
Query: 269 FFTVYGPWGRPDMAYFS-------FTRNILQGKPITVYRGKNHVD--LARDFTYIDDIVK 319
+ VYGP P F +L+G P+T+Y K D RD+ Y+ D+ +
Sbjct: 170 YGNVYGPRQDPH----GEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225
Query: 320 GCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG-NGDVPFT 378
+L + G I+N+G T +++ + + V P GD+ +
Sbjct: 226 AHALALFSLEG-----IYNVGTGEGHTTREVLMAVAEAAGKAPE--VQPAPPRPGDLERS 278
Query: 379 HANISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+ G+RP Q G++ V +
Sbjct: 279 VLSPLKL-MAHGWRPKVGFQEGIRLTVDHF 307
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 6e-70
Identities = 80/345 (23%), Positives = 137/345 (39%), Gaps = 36/345 (10%)
Query: 78 HVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA 137
H SS + R M +L+TG AG +G+++ +G ++ +DNF R+
Sbjct: 8 HHHSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGK-------REV 60
Query: 138 LLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLV 197
L G+ VIEG + DA LL + FD+ THV+H AA + +N+ G +
Sbjct: 61 LPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKD---PDDWAEDAATNVQGSI 117
Query: 198 TLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYN 257
+ +A A ++ ++ YG VP T P + Y +K AGE
Sbjct: 118 NVAKAASKAGV-KRLLNFQTALCYGRPATVPIPIDSPT-APFTSYGISKTAGEAFLMM-- 173
Query: 258 HIYGLSITGLRFFTVYGPWGR----PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313
+ + LR V GP P +F + + G+ D RDF
Sbjct: 174 --SDVPVVSLRLANVTGPRLAIGPIP-----TFYKRLKAGQKCFCS------DTVRDFLD 220
Query: 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP-GN 372
+ D + SL +FN+ ++ ++ +++ ++ + V + G
Sbjct: 221 MSDFLAIADLSLQEGRPT---GVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGA 277
Query: 373 GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRG 417
DVP + S + EFG++ D + + + WY YG
Sbjct: 278 DDVPSVVLDPSKTETEFGWKAKVDFKDTITGQLAWY-DKYGVTDI 321
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 3e-64
Identities = 58/340 (17%), Positives = 123/340 (36%), Gaps = 67/340 (19%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M++++TGA GFVG ++ L D H +F +
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTD--------------------------HHIFEVHRQ 34
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ +L + L A ++HLA ++ + N++ L +L+ +P
Sbjct: 35 TKEEELESALLKA---DFIVHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKP 87
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+I+ SSS + Y +K GE++ Y YG ++ R+
Sbjct: 88 AILL-SSSIQAT---------------QDNPYGESKLQGEQLLREYAEEYGNTVYIYRWP 131
Query: 271 TVYGPWGRPDMAYF--SFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328
++G W +P+ +F I + + I V Y+DDIV +++ +
Sbjct: 132 NLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNV----ELTLNYVDDIVAEIKRAIEGT 187
Query: 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANIS---SA 385
+ + N VT+ ++V++L + + + + + ++ + +S S
Sbjct: 188 PTIEN-GVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYLSYLPST 246
Query: 386 QKEFGYRPTTDLQTGLKKFVR--------WYLSYYGYNRG 417
+ D + +F++ +S G +G
Sbjct: 247 DFSYPLLMNVDDRGSFTEFIKTPDRGQVSVNISKPGITKG 286
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 2e-62
Identities = 73/380 (19%), Positives = 120/380 (31%), Gaps = 53/380 (13%)
Query: 81 SSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY------------- 127
+ H G V+V G G+ G +L L K+ V +DN
Sbjct: 2 RGSHHHHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPI 61
Query: 128 -DPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPH 186
+ +R L + + GDI D + LA+ F + V+H Q Y+M +
Sbjct: 62 ASIHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRS 121
Query: 187 S---YVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG------------LNENVPFSE 231
H+N+ G + +L A K + +V + YG + N
Sbjct: 122 RAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDT 181
Query: 232 ADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFS------ 285
Q +S Y +K +G+ T L VYG +
Sbjct: 182 LPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLD 241
Query: 286 -----------FTRNILQGKPITVY-RGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAP 333
F G P+TVY +G R + I D V+ ++ A
Sbjct: 242 YDAVFGTALNRFCVQAAVGHPLTVYGKGGQ----TRGYLDIRDTVQCVEIAIANPAKAGE 297
Query: 334 YRIFNLGN--TSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGY 391
+R+FN S + LV L + KK + P + + E G
Sbjct: 298 FRVFNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGL 357
Query: 392 RPTTDLQTGLKKFVRWYLSY 411
P + L + + + +
Sbjct: 358 EPHYLSDSLLDSLLNFAVQF 377
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 7e-61
Identities = 66/344 (19%), Positives = 113/344 (32%), Gaps = 44/344 (12%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRG-------DGVVGLDNFNNYYDPSLKKARKALLNNH 142
GM + + GAAG VG ++ L K G + +D F +
Sbjct: 14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF---------SG 64
Query: 143 GVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEA 202
V D++ KL +A + HLAA A + N+ G L +A
Sbjct: 65 AVDARAADLSAPGEAEKLVEA-RPDVIFHLAAIVSGE-AELDFDKGYRINLDGTRYLFDA 122
Query: 203 CKSAN----PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNH 258
+ AN +P +V+ SS +V+G P + T P + Y K E + Y+
Sbjct: 123 IRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHT-TPLTSYGTQKAICELLLSDYSR 181
Query: 259 IYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ----GKPITVYRGKNHVDLARDFTYI 314
G+R T+ G+P+ A F NIL+ G+ + + +
Sbjct: 182 RGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPE---SIRHWHASP 238
Query: 315 DDIVKGCLGSLD-TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNG 373
V + P R ++ S TV + + L + KA + P
Sbjct: 239 RSAVGFLIHGAMIDVEKVGPRRNLSMPGLS-ATVGEQIEALRKVAGEKAVALIRREPN-- 295
Query: 374 DVPFTHANISS--------AQKEFGYRPTTDLQTGLKKFVRWYL 409
+E G+ + + ++ + L
Sbjct: 296 --EMIMRMCEGWAPGFEAKRARELGFTAESSFEEIIQVHIEDEL 337
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 1e-50
Identities = 72/344 (20%), Positives = 138/344 (40%), Gaps = 35/344 (10%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+ + +TGA GF+ +H++ LK G V+ D N + + F + D
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE--------FHL-VD 80
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQA-GVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
+ + K+ + V HV +LAA G+ + N +++N ++EA + +
Sbjct: 81 LRVMENCLKVTEGV--DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK 138
Query: 210 PSIVWASSSSVYGLNENVPFSEADR------TDQPASLYAATKKAGEEIAHTYNHIYGLS 263
+ASS+ +Y + + + +P + K A EE+ YN +G+
Sbjct: 139 -RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIE 197
Query: 264 ITGLRFFTVYGPWGRPD----MAYFSFTRNILQGK-PITVY-RGKNHVDLARDFTYIDDI 317
RF +YGP+G A +F R ++ G R FT+ID+
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQ----TRSFTFIDEC 253
Query: 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPF 377
V+G L S P N+G+ V++ ++ ++ + K + I P V
Sbjct: 254 VEGVLRLTK-SDFREP---VNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP--EGVRG 307
Query: 378 THANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGKRVN 421
+++ + +++ G+ P L+ GL+ W + K +
Sbjct: 308 RNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSD 351
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 2e-49
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 21/192 (10%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LVTGAAG VG+ + L V D + + ++ ++ D+
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEE------------IVACDLA 52
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNP-HSYVHSNIAGLVTLLEACKSANPQPS 211
DA+ + L ++HL + ++ P + + +NI G L EA ++ P
Sbjct: 53 DAQAVHDLVKDC--DGIIHLGGVS-----VERPWNDILQANIIGAYNLYEAARNLGK-PR 104
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
IV+ASS+ G + + +P SLY +K GE++A Y H + + +R +
Sbjct: 105 IVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGS 164
Query: 272 VYGPWGRPDMAY 283
+ M
Sbjct: 165 CFPKPKDARMMA 176
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 1e-48
Identities = 81/342 (23%), Positives = 136/342 (39%), Gaps = 55/342 (16%)
Query: 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFV 146
+L+TG AGFVG+H++ L G V +DNF K+ + + + +
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT----GRKRNVEHWIGHENFEL 79
Query: 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
I D+ + + D + HLA+ A M NP + +N G + +L K
Sbjct: 80 INHDVVEPLYIE--VDQ-----IYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV 132
Query: 207 NPQPSIVWASSSSVYGLNENVPFSEADR----TDQPASLYAATKKAGEEIAHTYNHIYGL 262
+ ++ AS+S VYG E P SE P + Y K+ E + + Y G+
Sbjct: 133 GAR--LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGV 190
Query: 263 SITGLRFFTVYGPWGRPD--MAYFSFTRNILQGKPITVY-RGKNHVDLARDFTYIDDIVK 319
+ R F +GP + +F LQG+P+TVY G R F Y+ D+V
Sbjct: 191 EVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQ----TRAFQYVSDLVN 246
Query: 320 GCLGSLDTS-AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFT 378
G + ++++ + P NLGN T+ + A+ + + G
Sbjct: 247 GLVALMNSNVSSP-----VNLGNPEEHTILEF-----------AQL-IKNLVG-SGSEIQ 288
Query: 379 H------------ANISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+I A+ G+ P L+ GL K + ++
Sbjct: 289 FLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 330
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 1e-46
Identities = 68/360 (18%), Positives = 132/360 (36%), Gaps = 47/360 (13%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
VL+ G GF+G H+S + + D V + L+ + + EG
Sbjct: 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDM-------QTDRLGDLVKHERMHFFEG 76
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
DI K + ++ L A A ++ P + + ++ +
Sbjct: 77 DITINKEWVEYH-VKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKH 135
Query: 210 PSIVWASSSSVYGLNENVPFSEAD------RTDQPASLYAATKKAGEEIAHTYNHIYGLS 263
+V+ S+S VYG+ + F ++P +YA +K+ + + Y + GL+
Sbjct: 136 --LVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGY-GMEGLN 192
Query: 264 ITGLRFFTVYGPWGRPDMAYFS----------FTRNILQGKPITVYRGKNHVDLARDFTY 313
T R F GP D Y F +I++G+ I++ G + R FTY
Sbjct: 193 FTLFRPFNWIGP--GLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQK---RAFTY 247
Query: 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGN-TSPVTVPKL----VNILERHLKVKAKKNVIE 368
+DD + + ++ S G A +I+N+GN + +V +L + + + ++
Sbjct: 248 VDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVK 307
Query: 369 MPGNGDVPFTHA----------NISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGK 418
+ + I + +E G+ P L++ Y + R
Sbjct: 308 LVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVADARAL 367
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 1e-46
Identities = 71/360 (19%), Positives = 127/360 (35%), Gaps = 52/360 (14%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
M VL+ G GF+G H++ L + V GLD A LN+ +EG
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG--------SDAISRFLNHPHFHFVEG 52
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
DI+ + V+ L A A +NP + + ++ C +
Sbjct: 53 DISIHSEWIEYH-VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR 111
Query: 210 PSIVWASSSSVYGLNENVPFSEADR------TDQPASLYAATKKAGEEIAHTYNHIYGLS 263
I++ S+S VYG+ + F E ++P +Y+ +K+ + + Y GL
Sbjct: 112 --IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQ 169
Query: 264 ITGLRFFTVYGPWGRPDMAYFS----------FTRNILQGKPITVYRGKNHVDLARDFTY 313
T R F GP R D + N+++G PI + G R FT
Sbjct: 170 FTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQK---RCFTD 224
Query: 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP-VTVPKLVNILERHLKVKAKKNVIEMPGN 372
I D ++ ++ + I N+GN ++ +L +L + P
Sbjct: 225 IRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLA--SFEKHPLRHHFPPF 282
Query: 373 GDVPFTHA----------------NISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNR 416
+ +I +A + + P D+Q + + + ++L
Sbjct: 283 AGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLTD 342
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 7e-43
Identities = 54/243 (22%), Positives = 85/243 (34%), Gaps = 37/243 (15%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+LVTGAAG +G + L + + D ++ D+
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGP------------NEECVQCDLA 53
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
DA + + ++HL + + + NI GL L EA ++ QP I
Sbjct: 54 DANAVNAMVAGC--DGIVHLGGISVEK----PFEQILQGNIIGLYNLYEAARAHG-QPRI 106
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272
V+ASS+ G D +P LY +K GE +A Y +G +R +
Sbjct: 107 VFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSC 166
Query: 273 YGPWGRPDM--AYFS----------FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320
M +FS R + G P+ V+ A D + D+ G
Sbjct: 167 TPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCPV-VW-----GASANDAGWWDNSHLG 220
Query: 321 CLG 323
LG
Sbjct: 221 FLG 223
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 8e-40
Identities = 79/335 (23%), Positives = 138/335 (41%), Gaps = 50/335 (14%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
S+L+ G AG++G+H L G VV +DN + A+ G GD
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGH-------EDAI--TEGAKFYNGD 52
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D L +F VMH AA + V +M+ P Y ++N+ G + LLE
Sbjct: 53 LRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK-VD 111
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+++S+++ YG + +E T P + Y TK A E++ H Y+ L R+F
Sbjct: 112 KFIFSSTAATYGEVDVDLITEETMT-NPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYF 170
Query: 271 TVYG--PWGR----PD-----MAYFSFTRNILQ---GK--PITVYRGKNH-------VDL 307
V G P G + +LQ G+ I ++ G ++ +
Sbjct: 171 NVAGATPNGIIGEDHRPETHLIPL------VLQVALGQREKIMMF-GDDYNTPDGTCI-- 221
Query: 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKK-NV 366
RD+ +++D+V L +NLGN + +V ++V+ + V +
Sbjct: 222 -RDYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVRE---VTNHEIPA 277
Query: 367 IEMPG-NGDVPFTHANISSAQKEFGYRPT-TDLQT 399
P GD A+ A+++ G+ P +++T
Sbjct: 278 EVAPRRAGDPARLVASSQKAKEKLGWDPRYVNVKT 312
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 3e-39
Identities = 93/345 (26%), Positives = 146/345 (42%), Gaps = 45/345 (13%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L L +EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLP--VIERLGGKHPTFVEGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAH-TYNHIYGLSITGLRF 269
+ +++SS++VYG N +P+ E+ T P S Y +K E+I SI LR+
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYG----------PWGRPD--MAYFSFTRNILQ---GKPITVYRGKNHV---DLA--- 308
F G P G P+ M Y I Q G+ R + D
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPY------IAQVAVGR-----RDSLAIFGNDYPTED 226
Query: 309 ----RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKK 364
RD+ ++ D+ G + +++ A I+NLG +V +VN K K
Sbjct: 227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFS---KACGKP 283
Query: 365 NVIEMPG--NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
GD+P A+ S A +E +R T L + W
Sbjct: 284 VNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 5e-39
Identities = 68/361 (18%), Positives = 134/361 (37%), Gaps = 65/361 (18%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLD------NFNNYYDPSLKKARKALLNNHGV 144
+L+TG GF+G++++ +G ++ D +N L +
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNL---------HWLSSLGNF 52
Query: 145 FVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACK 204
+ GDI + + +L HLA Q + ++ NP N+ G + LLEA +
Sbjct: 53 EFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVR 112
Query: 205 SANPQPSIVWASSSSVYG-------LNENVPFSEADRTD--------QPASLYAATKKAG 249
N +I+++S++ VYG ++ D+ + S Y +K A
Sbjct: 113 QYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAA 172
Query: 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFS------FTRNILQ-----GKPITV 298
++ Y I+GL+ R ++YG + F + ++ KP T+
Sbjct: 173 DQYMLDYARIFGLNTVVFRHSSMYGGRQFAT---YDQGWVGWFCQKAVEIKNGINKPFTI 229
Query: 299 Y-RGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLG--NTSPVTVPKLVNILE 355
GK RD + +D++ +L + FN+G + +++ +L +LE
Sbjct: 230 SGNGKQ----VRDVLHAEDMISLYFTAL-ANVSKIRGNAFNIGGTIVNSLSLLELFKLLE 284
Query: 356 RHLKVKAK-KNVIEMPGNGDVPFTH-----ANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
+ + + N+ A+I + P + G++K W
Sbjct: 285 DYCNIDMRFTNLPVRES-------DQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTS 337
Query: 410 S 410
S
Sbjct: 338 S 338
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 8e-38
Identities = 91/348 (26%), Positives = 145/348 (41%), Gaps = 46/348 (13%)
Query: 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVI 147
S ++LVTG AG++G+H ++ L G VV DN N ++ R +
Sbjct: 3 STKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIA--RIEKITGKTPAFH 60
Query: 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
E D++D + LA++FDA T +H AA V ++ P Y +N+ L++LL +
Sbjct: 61 ETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERA 120
Query: 208 PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAH-TYNHIYGLSITG 266
+ IV++SS++VYG+ E P E + Y TK E+I +
Sbjct: 121 VK-RIVFSSSATVYGVPERSPIDETFPL-SATNPYGQTKLMAEQILRDVEAADPSWRVAT 178
Query: 267 LRFFTVYG----------PWGRPD--MAYFSFTRNILQ---GKPITVYRGKNHV---DLA 308
LR+F G P G P+ M Y + Q GK K V D
Sbjct: 179 LRYFNPVGAHESGLIGEDPAGIPNNLMPY------VAQVAVGK-----LEKLRVFGSDYP 227
Query: 309 -------RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVK 361
RD+ ++ D+ +G + +LD NLG +V ++V E K
Sbjct: 228 TPDGTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFE---KAS 284
Query: 362 AKKNVIEMPG--NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
+ E+ GDV +AN ++A + G++ DL+ RW
Sbjct: 285 GRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRW 332
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-37
Identities = 53/351 (15%), Positives = 96/351 (27%), Gaps = 55/351 (15%)
Query: 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFV 146
+ V GA G +G H + A++ G +V + ++ L
Sbjct: 10 PGAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIH---------RPSSQIQRLAYLEPEC 60
Query: 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
++ D L + + V+ A + V S + AC A
Sbjct: 61 RVAEMLDHAGLERALRGL--DGVIFSAGY--YPSRPRRWQEEVASALGQTNPFYAACLQA 116
Query: 207 NPQPSIVWASSSSVYGLN-ENVPFSEA---DRTDQPASLYAATKKAGEEIAHTYNHIYGL 262
I++ S+ + + +P E D S Y K A +E A GL
Sbjct: 117 RVPR-ILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQAR-NGL 174
Query: 263 SITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL 322
+ V G I G+ V R+ + +G L
Sbjct: 175 PVVIGIPGMVLGE-LDIGPTTGRVITAIGNGEMTHY------VAGQRNVIDAAEAGRGLL 227
Query: 323 GSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNV--------------IE 368
+L+ + L + + L + L A + +
Sbjct: 228 MALER---GRIGERYLLTGH-NLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRY 283
Query: 369 MPGNGDVPFT-----------HANISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+ A++E G+ TT L L + + W+
Sbjct: 284 RVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWF 334
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-36
Identities = 73/335 (21%), Positives = 127/335 (37%), Gaps = 24/335 (7%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
V VTG GF G +SL L+ G V G PSL + + G+ GDI
Sbjct: 12 VFVTGHTGFKGGWLSLWLQTMGATVKGYSL-TAPTVPSLFETARV---ADGMQSEIGDIR 67
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D L + V H+AAQ VR + P +N+ G V LLEA + ++
Sbjct: 68 DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAV 127
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---------GLS 263
V +S Y E + + Y+ +K E + +Y + + G +
Sbjct: 128 VNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTA 187
Query: 264 ITGLRFFTVYGP--WGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG- 320
+ +R V G W D R Q +P+ + R + + R + ++ + + G
Sbjct: 188 VATVRAGNVIGGGDWA-LDRIVPDILRAFEQSQPVII-RNPHAI---RPWQHVLEPLSGY 242
Query: 321 -CLGSLDTSAGPAPYRIFNLG--NTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPF 377
L + G +N G + V +V + ++ A + + +
Sbjct: 243 LLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHY 302
Query: 378 THANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
+ S A+ + G+ P +L T L+ V W+ ++
Sbjct: 303 LKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWL 337
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 4e-36
Identities = 99/350 (28%), Positives = 150/350 (42%), Gaps = 47/350 (13%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKA----RKALLNNHGVF 145
VLVTG AG++G+H L L + G V +DNF+N + R L V
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61
Query: 146 VIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKS 205
E DI D L +LF +F V+H A V ++Q P Y N+ G + LLE K+
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA 121
Query: 206 ANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAH-TYNHIYGLSI 264
+ ++V++SS++VYG + +P EA T + Y +K EE+ +
Sbjct: 122 HGVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNA 180
Query: 265 TGLRFFTVYG----------PWGRPD--MAYFSFTRNILQ---GKPITVYRGKNHV---D 306
LR+F G P G P+ M Y + Q G+ R +V D
Sbjct: 181 VLLRYFNPTGAHASGCIGEDPQGIPNNLMPY------VSQVAIGR-----REALNVFGND 229
Query: 307 LA-------RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLK 359
RD+ ++ D+ KG + +L RI+NLG + +V ++V +E K
Sbjct: 230 YDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAME---K 286
Query: 360 VKAKKNVIEMPG--NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
KK ++ GDV +AN S AQ+E G+ L + RW
Sbjct: 287 ASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 3e-32
Identities = 69/374 (18%), Positives = 130/374 (34%), Gaps = 75/374 (20%)
Query: 91 MSVLVTGAAGFVGTHVSLAL-KKRGDGVVGLDNFNN---------------YYDPSLKKA 134
M VLV G AG++G+H AL + VV +D+
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 135 RKALLNNHGVFVIEGDINDAKLLAKLFDAVA-FTHVMHLAAQAGVRYAMQNPHSYVHSNI 193
+ + + GD+ + L +F V+H+ A V ++++P Y +N+
Sbjct: 63 KPPWADRYAALE-VGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNV 121
Query: 194 AGLVTLLEACKSANPQPSIVWASSSSVYG-------LNENVPFSEADRTDQPASLYAATK 246
G++ LL+A I+++SS++++G P + P S Y +K
Sbjct: 122 VGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNAEPIDINAKK-SPESPYGESK 179
Query: 247 KAGEEIAHTYNHIYGLSITGLRFFTVYG--PWGR----PD----------MAYFS----- 285
E + YG+ LR+F G G S
Sbjct: 180 LIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPD 239
Query: 286 ----FTRNILQGKPITVYRGKNH-------VDLARDFTYIDDIVKG------CLGSLDTS 328
+ K + ++ G ++ V RD+ ++ D+ + L +
Sbjct: 240 QRLTIHEDASTDKRMPIF-GTDYPTPDGTCV---RDYVHVCDLASAHILALDYVEKLGPN 295
Query: 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKK-NVIEMPG-NGDVPFTHANISSAQ 386
+ +FNLG + +V +++ + K V E GD + A A+
Sbjct: 296 DKSKYFSVFNLGTSRGYSVREVIEVAR---KTTGHPIPVRECGRREGDPAYLVAASDKAR 352
Query: 387 KEFGYRPT-TDLQT 399
+ G++P L+
Sbjct: 353 EVLGWKPKYDTLEA 366
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 3e-31
Identities = 93/358 (25%), Positives = 144/358 (40%), Gaps = 55/358 (15%)
Query: 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFV 146
S VLVTG AG++G+H + L + G V DN +N S+ R +L H +
Sbjct: 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVA--RLEVLTKHHIPF 65
Query: 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
E D+ D K L K+F V+H A V + Q P Y H+NI G V LLE +
Sbjct: 66 YEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY 125
Query: 207 NPQPSIVWASSSSVYG----LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNH--IY 260
N V++SS++VYG +P E P + Y TK A E I + +
Sbjct: 126 NV-SKFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYGHTKYAIENILNDLYNSDKK 183
Query: 261 GLSITGLRFFTVYG----------PWGRPD--MAYFSFTRNILQ---GKPITVYRGKNHV 305
LR+F G P G P+ + Y + Q G+ R K ++
Sbjct: 184 SWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPY------MAQVAVGR-----REKLYI 232
Query: 306 ---DLA-------RDFTYIDDIVKGCLGSLD----TSAGPAPYRIFNLGNTSPVTVPKLV 351
D RD+ ++ D+ KG + +L + R +NLG+ TV ++
Sbjct: 233 FGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVY 292
Query: 352 NILERHLKVKAKKNVIEMPG--NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407
+ K ++ G GDV A A++E ++ ++ K +W
Sbjct: 293 HAFC---KASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKW 347
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 7e-29
Identities = 91/360 (25%), Positives = 153/360 (42%), Gaps = 82/360 (22%)
Query: 87 RSGGMSVLVTGAAGFVGTH-VSLALKKRGDG-VVGLD------NFNNYYDPSLKKARKAL 138
+S M++LVTG AGF+G++ V L+ ++ D N NN +K +
Sbjct: 21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNN-----VKSIQDH- 74
Query: 139 LNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVT 198
N+ FV +G+I + +LL + +++ AA++ V +++NP + +N+ G VT
Sbjct: 75 -PNY-YFV-KGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVT 131
Query: 199 LLEACKSANPQPSIVWA------SSSSVYG-LNENVPFSEADRTDQPASLYAATKKAGEE 251
LLE K S+ VYG L + F+E P S Y+++K + +
Sbjct: 132 LLELVKKY-------PHIKLVQVSTDEVYGSLGKTGRFTEETPLA-PNSPYSSSKASADM 183
Query: 252 IAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVY-RGKNHVDLARD 310
IA Y Y L + R YGP+ P+ N L+GK + +Y G N RD
Sbjct: 184 IALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLN----VRD 239
Query: 311 FTYIDD--------IVKGCLGSLDTSAGPAPYRIFNLGNTSPVT----VPKLVNILERHL 358
+ ++ D + KG +G ++N+G + T V +++ +L +
Sbjct: 240 WLHVTDHCSAIDVVLHKGRVG-----------EVYNIGGNNEKTNVEVVEQIITLLGKT- 287
Query: 359 KVKAKKNVIEM----PGNGDVPFTH----A-NISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
K IE G H A N + EF + P + GL++ V+WY
Sbjct: 288 -----KKDIEYVTDRLG-------HDRRYAINAEKMKNEFDWEPKYTFEQGLQETVQWYE 335
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 87/386 (22%), Positives = 152/386 (39%), Gaps = 116/386 (30%)
Query: 91 MSVLVTGAAGFVGTH-VSLALKKRGDGVVGLD------NFNNYYDPSLKKARKALLNNHG 143
M +L+TG AGF+G+ V +K D VV +D N + L ++ N +
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES-----LSDISES--NRY- 52
Query: 144 VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
F DI D+ + ++F+ VMHLAA++ V ++ P +++ +NI G LLE
Sbjct: 53 NFE-HADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVA 111
Query: 204 KSANPQPSIVWASSSS---------------VYG----------LNENVPFSEADRTDQP 238
+ W++ VYG F+E P
Sbjct: 112 RKY-------WSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYA-P 163
Query: 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV------YGPWGRPD-----MAYFSFT 287
+S Y+A+K + + + + YGL V YGP+ P+ +
Sbjct: 164 SSPYSASKASSDHLVRAWRRTYGLPT------IVTNCSNNYGPYHFPEKLIPLV-----I 212
Query: 288 RNILQGKPITVY-RGKNHVDLARDFTYIDD--------IVKGCLGSLDTSAGPAPYRIFN 338
N L+GKP+ +Y +G RD+ Y++D + +G G +N
Sbjct: 213 LNALEGKPLPIYGKGDQ----IRDWLYVEDHARALHMVVTEGKAG-----------ETYN 257
Query: 339 LGNTSPVT----VPKLVNILERHL-KVKAKKNVIEM----PGNGDVPFTH----A-NISS 384
+G + V + ++L+ + K + + I PG H A +
Sbjct: 258 IGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPG-------HDRRYAIDAGK 310
Query: 385 AQKEFGYRPTTDLQTGLKKFVRWYLS 410
+E G++P ++G++K V WYL+
Sbjct: 311 ISRELGWKPLETFESGIRKTVEWYLA 336
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-27
Identities = 93/349 (26%), Positives = 152/349 (43%), Gaps = 70/349 (20%)
Query: 91 MSVLVTGAAGFVGTH-VSLALKKRGDG-VVGLD------NFNNYYDPSLKKARKALLNNH 142
M +LVTG GF+G++ + L+K D V+ +D N N LK +
Sbjct: 4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPAN-----LKDLEDD--PRY 56
Query: 143 GVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEA 202
FV +GD+ D +L+ +L V+HLAA++ V ++ +P ++HSN+ G TLLE+
Sbjct: 57 -TFV-KGDVADYELVKELVR--KVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLES 112
Query: 203 CKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGL 262
+ NP+ V S+ VYG F+E DR P+S Y+ATK A + + + Y L
Sbjct: 113 IRRENPEVRFVHVSTDEVYGDILKGSFTENDRLM-PSSPYSATKAASDMLVLGWTRTYNL 171
Query: 263 SITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVY-RGKNHVDLARDFTYIDD----- 316
+ + R YGP+ P+ G I +Y GKN RD+ Y++D
Sbjct: 172 NASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKN----VRDWLYVEDHVRAI 227
Query: 317 ---IVKGCLGSLDTSAGPAPYRIFNLGNTSPVT----VPKLVNILERHLKVKAKKNVIEM 369
++KG I+N+ T V ++ ++ + + +IE+
Sbjct: 228 ELVLLKGESR-----------EIYNISAGEEKTNLEVVKIILRLMGKG------EELIEL 270
Query: 370 ----PGNGDVPFTH-----ANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
PG H + ++ +RP G+KK + WYL
Sbjct: 271 VEDRPG-------HDLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYL 312
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 89/358 (24%), Positives = 143/358 (39%), Gaps = 85/358 (23%)
Query: 91 MSVLVTGAAGFVGTHVSLAL------KKRGDGVVGLD------NFNNYYDPSLKKARKAL 138
M +LVTG AGF+G+H L D V+ LD N N +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL---------APV 51
Query: 139 LNNHGVFVIEGDINDAKLLAKLF---DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAG 195
+ + + GDI DA LLA+ DA ++H AA++ V ++ + +N+ G
Sbjct: 52 DADPRLRFVHGDIRDAGLLARELRGVDA-----IVHFAAESHVDRSIAGASVFTETNVQG 106
Query: 196 LVTLLEACKSANPQPSIVWA------SSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249
TLL+ A S++ VYG ++ ++E+ + P S YAA+K
Sbjct: 107 TQTLLQCAVDA-------GVGRVVHVSTNQVYGSIDSGSWTESSPLE-PNSPYAASKAGS 158
Query: 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVY-RGKNHVDLA 308
+ +A Y+ YGL + R YGP+ P+ F N+L G + +Y G N
Sbjct: 159 DLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGAN----V 214
Query: 309 RDFTYIDD--------IVKGCLGSLDTSAGPAPYRIFNLGNTSPVT----VPKLVNILER 356
R++ + DD + G G I+++G +T L++ L
Sbjct: 215 REWVHTDDHCRGIALVLAGGRAG-----------EIYHIGGGLELTNRELTGILLDSLGA 263
Query: 357 HLKVKAKKNVIEMPGNGDVPFTH-----ANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
+ + V + G H + ++E GYRP GL + VRWY
Sbjct: 264 D--WSSVRKVADRKG-------HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYR 312
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-25
Identities = 80/390 (20%), Positives = 143/390 (36%), Gaps = 60/390 (15%)
Query: 61 SGSRYFSAS--WGGIQWEKHVRSSAQIHRSGG--MSVLVTGAAGFVGTHVSLALKKRGD- 115
S + + R ++Q + VL+ G GF+G H++ L +
Sbjct: 282 GDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHY 341
Query: 116 GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK----LLAKLFDAVAFTHVMH 171
V GLD ++ A LN+ +EGDI+ K D V +
Sbjct: 342 EVYGLDIGSD--------AISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVV-----LP 388
Query: 172 LAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSE 231
L A A +NP + + ++ C + I++ S+S VYG+ + F E
Sbjct: 389 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR--IIFPSTSEVYGMCSDKYFDE 446
Query: 232 ADRT------DQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFS 285
++P +Y+ +K+ + + Y GL T R F GP R D +
Sbjct: 447 DHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGP--RLDNLNAA 504
Query: 286 ----------FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYR 335
N+++G PI + G R FT I D ++ ++ +
Sbjct: 505 RIGSSRAITQLILNLVEGSPIKLIDGGKQ---KRCFTDIRDGIEALYRIIENAGNRCDGE 561
Query: 336 IFNLGN-TSPVTVPKLVNIL----ERHLKVK---AKKNVIEMP-----GNG--DVPFTHA 380
I N+GN + ++ +L +L E+H + G G DV
Sbjct: 562 IINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKP 621
Query: 381 NISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
+I +A + + P D+Q + + + ++L
Sbjct: 622 SIRNAHRCLDWEPKIDMQETIDETLDFFLR 651
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-25
Identities = 77/341 (22%), Positives = 136/341 (39%), Gaps = 54/341 (15%)
Query: 79 VRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL 138
+R S H G M L+TG AGFVG +++ L ++ V G
Sbjct: 1 MRGSHHHHHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGT------------SRNNEA 48
Query: 139 LNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVT 198
+ V +I DI D++ + K+ + ++ HLAA++ V+ + N +N+ G +
Sbjct: 49 KLPN-VEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLH 107
Query: 199 LLEACKSANPQPSIVWASSSSVYGL--------NENVPFSEADRTDQPASLYAATKKAGE 250
+L+A + +N I+ SS YG+ +E +P S Y +K +
Sbjct: 108 VLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQL-------RPMSPYGVSKASVG 160
Query: 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYF---SFTR---NILQGK-PITVYRGKN 303
+A Y YG+ I R F GP G+ F F + +I K + G N
Sbjct: 161 MLARQYVKAYGMDIIHTRTFNHIGP-GQSLG--FVTQDFAKQIVDIEMEKQEPIIKVG-N 216
Query: 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK 363
++ RDFT + DIV+ ++N+ + + ++++L VK
Sbjct: 217 -LEAVRDFTDVRDIVQAYWLLSQY---GKTGDVYNVCSGIGTRIQDVLDLLLAMANVK-- 270
Query: 364 KNVIEMPGN------GDVPFTHANISSAQKEFGYRPTTDLQ 398
I+ N +VP + + G++P L+
Sbjct: 271 ---IDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLE 308
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 64/322 (19%), Positives = 102/322 (31%), Gaps = 52/322 (16%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+L+ G G +G ++ L +G V GL R A GV + D
Sbjct: 4 SKILIAGC-GDLGLELARRLTAQGHEVTGL-------------RRSAQPMPAGVQTLIAD 49
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ LA + ++ A + Y S + GL L A + A Q
Sbjct: 50 VTRPDTLASIVHLR--PEILVYCVAASEY----SDEHYRLSYVEGLRNTLSALEGAPLQ- 102
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+ + SS+ VYG E D E + S T LRF
Sbjct: 103 HVFFVSSTGVYGQEVEEWLDE-DTPPIAKDFSGKRMLEAEALLA------AYSSTILRFS 155
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330
+YGP GR M + T + N + + DD + +
Sbjct: 156 GIYGP-GRLRMIRQAQTPEQWPARN----AWTNRI-------HRDDGAAFIAYLIQQRSH 203
Query: 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHAN--ISSAQ-K 387
P R++ + + P+ V L+ L + P G P N +S+A+
Sbjct: 204 AVPERLYIVTDNQPLPVHDLLRWLADRQGI-------AYPA-GATPPVQGNKKLSNARLL 255
Query: 388 EFGYRPT-TDLQTGLKKFVRWY 408
GY+ D +G +
Sbjct: 256 ASGYQLIYPDYVSGYGALLAAM 277
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 2e-22
Identities = 85/370 (22%), Positives = 141/370 (38%), Gaps = 102/370 (27%)
Query: 91 MSVLVTGAAGFVGTH-VSLALKKRGDG-VVGLD------NFNNYYDPSLKKARKALLNNH 142
+++VTG AGF+G++ V D V LD N N +A+L +
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANL---------EAILGDR 55
Query: 143 GVFVIEGDINDAKLLAKLF---DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTL 199
V GDI DA+L+ KL DA ++H AA++ ++ +P ++H+N G TL
Sbjct: 56 VELV-VGDIADAELVDKLAAKADA-----IVHYAAESHNDNSLNDPSPFIHTNFIGTYTL 109
Query: 200 LEACKSANPQPSIVWA-----SSSSVYG------------LNENVPFSEADRTDQPASLY 242
LEA + S+ VYG F+ + P+S Y
Sbjct: 110 LEAARKY-------DIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN-PSSPY 161
Query: 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVY-RG 301
++TK A + I + +G+ T YGP+ + NIL G +Y G
Sbjct: 162 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEG 221
Query: 302 KNHVDLARDFTYIDD--------IVKGCLGSLDTSAGPAPYRIFNLGNTSPVT----VPK 349
KN RD+ + +D + KG +G + +G +
Sbjct: 222 KN----VRDWIHTNDHSTGVWAILTKGRMG-----------ETYLIGADGEKNNKEVLEL 266
Query: 350 LVNILERHLKVKAKKNVIEM----PGNGDVPFTH----A-NISSAQKEFGYRPT-TDLQT 399
++ + + K+ + G H A + S + E G+ P TD
Sbjct: 267 ILEKMGQP------KDAYDHVTDRAG-------HDLRYAIDASKLRDELGWTPQFTDFSE 313
Query: 400 GLKKFVRWYL 409
GL++ ++WY
Sbjct: 314 GLEETIQWYT 323
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 91.7 bits (227), Expect = 1e-20
Identities = 53/346 (15%), Positives = 98/346 (28%), Gaps = 47/346 (13%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDG-----VVGLDNFNNYYDPSLKKARKALLNNHGVFV 146
L+ G G +G ++ L V G+ + R A ++ +
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR----------RTRPAWHEDNPINY 52
Query: 147 IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
++ DI+D + T V H+ +N +L+A
Sbjct: 53 VQCDISDPDDSQAKLSPL--TDVTHVFYVTWAN--RSTEQENCEANSKMFRNVLDAVIPN 108
Query: 207 NPQPS-IVWASSSSVY---------GLNENVPFSEAD-RTDQPASLYAATKKAGEEIAHT 255
P I + Y + + P++E R Y EE+
Sbjct: 109 CPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKK 168
Query: 256 YNHIYGLSITGLRFFTVYGPWGRPDM-------AYFSFTRNILQGKPITVYRGKNHVDLA 308
GL+ + R ++G M Y + + +GK + K D
Sbjct: 169 ----EGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICK--HEGKVLRFTGCKAAWDGY 222
Query: 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNV-- 366
D + D I + + + A FN+ N +L V+ +
Sbjct: 223 SDCSDADLIAEHHIWAAVDPY--AKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEG 280
Query: 367 IEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
+++ + +E G PT G+ F L
Sbjct: 281 VDLKLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNE 326
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 3e-18
Identities = 30/222 (13%), Positives = 67/222 (30%), Gaps = 30/222 (13%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+++ GA+GFVG+ + RG V + ++ K + N + V + D
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAV----------VRHPEKIKIENEHLKVKKAD 54
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
++ + ++ V+ + + I +T+++ K A
Sbjct: 55 VSSLDEVCEVCKGA--DAVISAFNPGWNNPDIYDET------IKVYLTIIDGVKKAGVNR 106
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+ + + + D + P ++ K GE + +
Sbjct: 107 -FLMVGGAGSLFIAPGLRL--MDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPA 163
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV---DLAR 309
P R + + I G +H+ D A
Sbjct: 164 ADMRPGVRTGRY------RLGKDDMIVDIVGNSHISVEDYAA 199
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 1e-13
Identities = 38/259 (14%), Positives = 77/259 (29%), Gaps = 45/259 (17%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKAR---KALLNNHGVFVI 147
M + + GA G G+ + K RG V + R K + + ++
Sbjct: 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAI-------------VRNAGKITQTHKDINIL 47
Query: 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
+ DI D L L+ Q V A ++ L L+
Sbjct: 48 QKDIFDLTLSD-------------LSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTV 94
Query: 208 PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
P ++ ++ ++E+ + + A Y + +++ H +H S T +
Sbjct: 95 -SPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYI 153
Query: 268 RFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327
++ P R T + GK ++ F ++D L ++
Sbjct: 154 SPSAMFEPGER--------TGDYQIGKDHLLFGSD-----GNSFISMEDYAIAVLDEIER 200
Query: 328 SAGPAPYRIFNLGNTSPVT 346
F +
Sbjct: 201 PN--HLNEHFTVAGKLEHH 217
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 57/317 (17%), Positives = 106/317 (33%), Gaps = 54/317 (17%)
Query: 87 RSGGMSVLVTGAAGFVGTHVSLAL----------------KKRGDGVVGLDNFNNYYDPS 130
+VL+TGA GF+G ++ L L + D L+ + DP
Sbjct: 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPE 129
Query: 131 LKKARKALLNNHGVFVIEGDINDAKL------LAKLFDAVAFTHVMHLAAQAGVRYAMQN 184
L + K L + + V+ GD ++ L +L + V ++ AA V
Sbjct: 130 LLRHFKELAADR-LEVVAGDKSEPDLGLDQPMWRRLAETV--DLIVDSAAM--VNAFP-- 182
Query: 185 PHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASL--- 241
H N+AG L+ + +P + S++ V E F+E +
Sbjct: 183 YHELFGPNVAGTAELIRIALTTKLKP-FTYVSTADVGAAIEPSAFTEDADIRVISPTRTV 241
Query: 242 -------YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGP------WGRPDMAYFSFTR 288
Y +K AGE + N + L + R + D
Sbjct: 242 DGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLS 301
Query: 289 NILQGK-PITVYRGKNHVDLAR---DFTYIDDIVKG--CLGSLDTSAGPAPYRIFNLGN- 341
+ G P + Y + + R D + + + LG+ + A + +++ N
Sbjct: 302 LMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNP 361
Query: 342 -TSPVTVPKLVNILERH 357
+ + + V+ L
Sbjct: 362 HDDGIGLDEYVDWLIEA 378
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 4e-11
Identities = 24/190 (12%), Positives = 54/190 (28%), Gaps = 25/190 (13%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA--LLNNHGVFVIE 148
M + V GA G G+ + ++RG V+ + R + G V
Sbjct: 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAV-------------VRDPQKAADRLGATVAT 47
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
L D+V V+ + + Y+H + A L+ ++++
Sbjct: 48 LVKEPLVLTEADLDSVD--AVVDALSVPW-----GSGRGYLHLDFA--THLVSLLRNSDT 98
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
++ S+S+ + P + + ++ G+
Sbjct: 99 -LAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGIS 157
Query: 269 FFTVYGPWGR 278
+
Sbjct: 158 PSEAFPSGPA 167
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 31/189 (16%), Positives = 59/189 (31%), Gaps = 40/189 (21%)
Query: 71 GGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPS 130
G H S + GM VLV GA G V ++ LK +G V +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM---------- 51
Query: 131 LKKARKA--LLNNHGVFVIEGDINDAKLLAKLF---DAVAFTHVMHLAAQAGVRYAMQNP 185
++ + L ++ ++ + + F DAV F AG
Sbjct: 52 VRNEEQGPELRERGASDIVVANLEED--FSHAFASIDAVVFA--------AGSGPH-TGA 100
Query: 186 HSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASL--YA 243
+ ++ G + ++ + + + SS D P ++ Y
Sbjct: 101 DKTILIDLWGAIKTIQEAEKRGIKR-FIMVSSVGTV-----------DPDQGPMNMRHYL 148
Query: 244 ATKKAGEEI 252
K+ ++
Sbjct: 149 VAKRLADDE 157
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 22/179 (12%), Positives = 52/179 (29%), Gaps = 31/179 (17%)
Query: 76 EKHVRSSAQIHRSGGMS-VLVTGAAGFVGTH-VSLALKKRGDGVVGLDNFNNYYDPSLKK 133
H ++ G M VL+ GA G + H ++ K+ + +
Sbjct: 8 HHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLF---------ARQP 58
Query: 134 ARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNI 193
A+ +I GD+ + L + V + +
Sbjct: 59 AKIHKPYPTNSQIIMGDVLNHAALKQAMQGQ--DIVYANLTGEDLDIQANS--------- 107
Query: 194 AGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEI 252
++ A K+ + + +++ S +Y + VP + + + +
Sbjct: 108 -----VIAAMKACDVK-RLIFVLSLGIY---DEVPGKFVEWNNAVIGEPLKPFRRAADA 157
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-09
Identities = 49/290 (16%), Positives = 88/290 (30%), Gaps = 52/290 (17%)
Query: 88 SGGM-SVLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKARKALLNNHGV 144
S + +VLVTGA+G G V LK+ D GL ++ A+
Sbjct: 1 SANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGL----------VRSAQGKEKIGGEA 50
Query: 145 FVIEGDINDAKLLAKLF---DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIA------- 194
V GDI DA + F DA+ + G ++ +
Sbjct: 51 DVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDW 110
Query: 195 -GLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIA 253
G ++A K A + IV S N + P + K+ E+
Sbjct: 111 IGQKNQIDAAKVAGVKH-IVVVGSMGGT--NPDHPLN-----KLGNGNILVWKRKAEQY- 161
Query: 254 HTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313
L+ +G + + + + V + +
Sbjct: 162 --------LADSGTPYTIIRAGG---------LLDKEGGVRELLVGKDDELLQTDTKTVP 204
Query: 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK 363
D+ + C+ +L A + F+LG+ T + +V ++
Sbjct: 205 RADVAEVCIQALLFEE--AKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-09
Identities = 52/325 (16%), Positives = 107/325 (32%), Gaps = 57/325 (17%)
Query: 88 SGGMS--VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVF 145
S M+ +L G G+ +S AL +G ++G S + + G
Sbjct: 1 SNAMTGTLLSFGH-GYTARVLSRALAPQGWRIIGT---------SRNPDQMEAIRASGAE 50
Query: 146 VIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKS 205
+ + L D V ++ A +G + + IA
Sbjct: 51 PLLWPGEEPSL-----DGVTHL-LISTAPDSGGDPVLAA----LGDQIAAR--------- 91
Query: 206 ANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSIT 265
A + + S+++VYG + + + + P + + E+ + L +
Sbjct: 92 AAQFRWVGYLSTTAVYG-DHDGAWVDETTPLTPTAARGRWRVMAEQQWQ---AVPNLPLH 147
Query: 266 GLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325
R +YGP GR + KP V+ + + +++DI + S+
Sbjct: 148 VFRLAGIYGP-GRGPFSKLGKGGIRRIIKPGQVF---SRI-------HVEDIAQVLAASM 196
Query: 326 DTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVK-------AKKNVIEMPGNGDVPFT 378
A P P ++N+ + PV ++ + K ++ M +
Sbjct: 197 ---ARPDPGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENK 253
Query: 379 HANISSAQKEFGYRPT-TDLQTGLK 402
++E G R + + GL+
Sbjct: 254 RVRNDRIKEELGVRLKYPNYRVGLE 278
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 32/167 (19%), Positives = 47/167 (28%), Gaps = 37/167 (22%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+ + GA G G + G V L D S R V+ GD
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVL-----VRDSS----RLPSEGPRPAHVVVGD 54
Query: 151 INDAKLLAKLF---DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
+ A + K DAV G R + V S G ++ A K+
Sbjct: 55 VLQAADVDKTVAGQDAVIVL--------LGTRNDLSPTT--VMS--EGARNIVAAMKAHG 102
Query: 208 PQPSIVWASSSSVYGLNENVPFSEADRTDQPASL--YAATKKAGEEI 252
+V +S+ F D T P L ++
Sbjct: 103 V-DKVVACTSA----------FLLWDPTKVPPRLQAVTDDHIRMHKV 138
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 44/261 (16%), Positives = 80/261 (30%), Gaps = 62/261 (23%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M L+TGA+G +G +S L +R + + ++ L D
Sbjct: 1 MRTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKL------------------D 42
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D L +++ AA V N + ++ A K +
Sbjct: 43 LTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSY- 101
Query: 211 SIVWASSSSVY-GLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRF 269
IV S+ V+ G E + E D + P + Y +K GE A + + I +R
Sbjct: 102 -IVHISTDYVFDG--EKGNYKEEDIPN-PINYYGLSKLLGETFALQDDSL----I--IR- 150
Query: 270 FT--VYGPWGRPDMAYFSFTRNIL----QGKPITVYRGKNHVDLARDF---TYIDDIVKG 320
T ++ G F + +GK + + +
Sbjct: 151 -TSGIFRNKG--------FPIYVYKTLKEGKTVFA------FK---GYYSPISARKLASA 192
Query: 321 CLGSLDTSAGPAPYRIFNLGN 341
L L+ I ++
Sbjct: 193 ILELLELRK----TGIIHVAG 209
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 2e-08
Identities = 45/287 (15%), Positives = 82/287 (28%), Gaps = 48/287 (16%)
Query: 91 MS----VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFV 146
M VL+ G G++G + A G L + K G +
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNID-KVQMLLYFKQLGAKL 59
Query: 147 IEGDINDAKLLAKLF---DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
IE ++D + L D V + + +I + L+EA
Sbjct: 60 IEASLDDHQRLVDALKQVDVVISALAGGVLSH----------------HILEQLKLVEAI 103
Query: 204 KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE--IAHTYNHIYG 261
K A + S +G++ ++ ++A E I +TY
Sbjct: 104 KEAGNIKRFLP----SEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNM 159
Query: 262 LSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321
F + + R + +Y N + DD+
Sbjct: 160 -------FAGYFAGSLAQLDGHMMPPR-----DKVLIYGDGNVK---GIWVDEDDVGTYT 204
Query: 322 LGSL-DTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI 367
+ S+ D I N ++ +++ I ER + K I
Sbjct: 205 IKSIDDPQTLNKTMYIRPPMNI--LSQKEVIQIWERLSEQNLDKIYI 249
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 43/281 (15%), Positives = 81/281 (28%), Gaps = 47/281 (16%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
+L+ GA G++G HV+ A G L + S K G ++ G I
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 152 NDAKLLAKLF---DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
+D L + D V ++ ++ Q V +++A K
Sbjct: 66 DDHASLVEAVKNVDVV-------ISTVGSLQIESQ-------------VNIIKAIKEVGT 105
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
S +G + + +PA K Y +
Sbjct: 106 VKRFF----PSEFGND-----VDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSN-- 154
Query: 269 FFTVYGPWGRPDMAYFSFTRNILQGKPITVY-RGKNHVDLARDFTYIDDIVKGCLGSL-D 326
F Y + + G V F +DI + ++ D
Sbjct: 155 CFAGYFLRSLAQAGLT-----APPRDKVVILGDGNARV----VFVKEEDIGTFTIKAVDD 205
Query: 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI 367
+ NT +++ +LV + E+ + +K +
Sbjct: 206 PRTLNKTLYLRLPANT--LSLNELVALWEKKIDKTLEKAYV 244
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 44/275 (16%), Positives = 81/275 (29%), Gaps = 65/275 (23%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
VLVTGA G +G V ++ VG + +
Sbjct: 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-----------------FEQVN 45
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ D+ + + ++H AA+ P + N+ L + +
Sbjct: 46 LLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG--- 102
Query: 211 SIVWASSSSVY--------GLNENVPFSEADRTDQPASLYAATKKAGEE--IAHTYNHIY 260
+ +Y G N P+ E D P +LY TK GE+ + +
Sbjct: 103 ------AFLIYISSDYVFDG--TNPPYREEDIPA-PLNLYGKTKLDGEKAVLENNLGAA- 152
Query: 261 GLSITGLRFFT--VYGPWGRPDMAYFSFTRNILQ-----GKPITVYRGKNHVDLARDF-T 312
+ LR +YG + + S + K + + F T
Sbjct: 153 ---V--LR--IPILYGEVEKLEE---SAVTVMFDKVQFSNKSANM------DHWQQRFPT 196
Query: 313 YIDDIVKGCLGSLDT-SAGPAPYRIFNLGNTSPVT 346
++ D+ C + P+ F+ +T
Sbjct: 197 HVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMT 231
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 144 VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
+ +GD+ DA + + V +LAAQ+ V + P + + G+ LLEA
Sbjct: 65 IQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAI 124
Query: 204 KSANPQPSIVWASSSSVYGL------NENVPFSEADRTDQPASLYAATKKAGEEIAHTYN 257
+ +P+ AS+S ++GL +EN PF P S Y K G I Y
Sbjct: 125 RQFSPETRFYQASTSEMFGLIQAERQDENTPF-------YPRSPYGVAKLYGHWITVNYR 177
Query: 258 HIYGL 262
+GL
Sbjct: 178 ESFGL 182
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-08
Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 30/163 (18%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M + + G+ G VG + +L + + K + NN + D
Sbjct: 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAG---------ARKVEQVPQYNNVKAVHFDVD 51
Query: 151 INDAKLLAKL--FDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
++ +L DA+ +G S + ++ G V L++A + A
Sbjct: 52 WTPEEMAKQLHGMDAIINV--------SGSG-----GKSLLKVDLYGAVKLMQAAEKAEV 98
Query: 209 QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE 251
+ I+ S+++ L + Y K +
Sbjct: 99 KRFIL---LSTIFSLQPEKWIGAGFDALKD---YYIAKHFADL 135
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 45/282 (15%), Positives = 85/282 (30%), Gaps = 48/282 (17%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGL-DNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+L+ G G +G H+ A K G+ L +P K+ + GV ++EGD
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 151 INDAKLLAKLF---DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
IND + L K D V + A + Q V +++A K A
Sbjct: 64 INDHETLVKAIKQVDIV-------ICAAGRLLIEDQ-------------VKIIKAIKEAG 103
Query: 208 PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
S +G + D + ++ I G+ T L
Sbjct: 104 NVKKFF----PSEFG----LDVDRHDAVEPVRQVFEEKASIRRVIEAE-----GVPYTYL 150
Query: 268 R--FFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325
FT Y + R + + N + D+ + +
Sbjct: 151 CCHAFTGYFLRNLAQLDATDPPR-----DKVVILGDGNVK---GAYVTEADVGTFTIRAA 202
Query: 326 DTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI 367
+ + +T +++ + E+ + +K +
Sbjct: 203 NDPNTLNKAVHIR-LPKNYLTQNEVIALWEKKIGKTLEKTYV 243
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-07
Identities = 21/171 (12%), Positives = 45/171 (26%), Gaps = 36/171 (21%)
Query: 88 SGGMS--VLVTGAAGFVGTH-VSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGV 144
S M + + GAAG + + L + + ++++ V
Sbjct: 1 SNAMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGR-----QLK-TRIPPEIIDHERV 54
Query: 145 FVIEGDINDAKLLAKLF---DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLE 201
VIEG + L + + V + + A + A+
Sbjct: 55 TVIEGSFQNPGXLEQAVTNAEVVFVGAMESGSDMASIVKALS------------------ 96
Query: 202 ACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEI 252
++ S + + E E D Y ++ +
Sbjct: 97 ----RXNIRRVIGVSMAGLS--GEFPVALEKWTFDNLPISYVQGERQARNV 141
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 144 VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
V +I D+ + + + + V V +LAAQ+ V + + P + G++ +LEA
Sbjct: 54 VKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEAL 113
Query: 204 KSANPQPSIVWASSSSVYGL------NENVPFSEADRTDQPASLYAATKKAGEEIAHTYN 257
++ P AS+S ++G E PF P S YA K G I Y
Sbjct: 114 RTVKPDTKFYQASTSEMFGKVQEIPQTEKTPF-------YPRSPYAVAKLFGHWITVNYR 166
Query: 258 HIYGL 262
Y +
Sbjct: 167 EAYNM 171
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 22/145 (15%)
Query: 126 YYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNP 185
Y +P + + GD+ D+ L K+ + V T + +L AQ+ V+ +
Sbjct: 70 YKNPQAHIEGN-------MKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLA 122
Query: 186 HSYVHSNIAGLVTLLEACKSANPQPSIVW--ASSSSVYGL------NENVPFSEADRTDQ 237
+ G + LL+A K+ S+ + AS+S +YG E PF
Sbjct: 123 EYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF-------Y 175
Query: 238 PASLYAATKKAGEEIAHTYNHIYGL 262
P S Y A K I + Y L
Sbjct: 176 PRSPYGAAKLYAYWIVVNFREAYNL 200
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Length = 381 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 52/188 (27%), Positives = 73/188 (38%), Gaps = 33/188 (17%)
Query: 94 LVTGAAGFVGTHVSLALKKRGDGVVGLD----NFNN------YYDPSLKKARKALLNNHG 143
L+TG G G++++ L +G V GL NFN Y DP
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKAL------- 84
Query: 144 VFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC 203
+ + D+ DA L + D + V +LAAQ+ V + + P G + LLEA
Sbjct: 85 MKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAV 144
Query: 204 KSANPQPS----IVWASSSSVYGL-----NENVPFSEADRTDQPASLYAATKKAGEEIAH 254
+S A SS ++G +E PF P S YAA+K A
Sbjct: 145 RSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPF-------HPRSPYAASKCAAHWYTV 197
Query: 255 TYNHIYGL 262
Y YGL
Sbjct: 198 NYREAYGL 205
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 39/161 (24%), Positives = 57/161 (35%), Gaps = 27/161 (16%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M +L+TGA G +G + LK + V+ D + L D
Sbjct: 13 MKILITGANGQLGREIQKQLKGKNVEVIPTD-------------VQDL-----------D 48
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + + K F+ V++ AA V + N G L A S +
Sbjct: 49 ITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAE- 107
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE 251
IV S+ V+ P +E D + P S Y TK GE
Sbjct: 108 -IVQISTDYVFDGEAKEPITEFDEVN-PQSAYGKTKLEGEN 146
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 39/192 (20%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
V++TGA G +G + L + D +K L D
Sbjct: 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFD-------------KKLL-----------D 41
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + + ++ + ++H AA V A + N G + A + +
Sbjct: 42 ITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAK- 100
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE--IAHTYNHIYGLSITGLR 268
+V+ S+ V+ + + E P ++Y A+K AGE+ + I +R
Sbjct: 101 -LVYISTDYVFQGDRPEGYDEFHNPA-PINIYGASKYAGEQFVKELHNKYF----I--VR 152
Query: 269 FFT--VYGPWGR 278
T +YG +G
Sbjct: 153 --TSWLYGKYGN 162
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Length = 372 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 23/145 (15%)
Query: 126 YYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNP 185
Y DP + + GD++D L ++ V V +L A + V + ++P
Sbjct: 47 YQDPHTCNPK--------FHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESP 98
Query: 186 HSYVHSNIAGLVTLLEACKSANPQPSIVW--ASSSSVYGL------NENVPFSEADRTDQ 237
+ G + LLEA + + + AS+S +YGL E PF
Sbjct: 99 EYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-------Y 151
Query: 238 PASLYAATKKAGEEIAHTYNHIYGL 262
P S YA K I Y YG+
Sbjct: 152 PRSPYAVAKLYAYWITVNYRESYGM 176
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 40/190 (21%), Positives = 58/190 (30%), Gaps = 39/190 (20%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGV----F 145
G VLVTGA GFV +HV L + G V G S + +
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRG-----TARSASKLANLQKRWDAKYPGRFET 65
Query: 146 VIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKS 205
+ D+ ++ V H+A+ V I G + L A +
Sbjct: 66 AVVEDMLKQGAYDEVIKGA--AGVAHIASVVSFSN---KYDEVVTPAIGGTLNALRAAAA 120
Query: 206 ANPQPSI---VWASSS-SVY---GLNENVPFSEADRTD---------------QPASLYA 243
PS+ V SS+ S E + E + +YA
Sbjct: 121 T---PSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYA 177
Query: 244 ATKKAGEEIA 253
A+K E A
Sbjct: 178 ASKTEAELAA 187
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-06
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 21/101 (20%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
++ V GA G +G ++ LK + V D+ A A+LN GV +
Sbjct: 6 WNICVVGA-GKIGQMIAALLKTSSNYSVTVADH---------DLAALAVLNRMGVATKQV 55
Query: 150 DINDAKLLAKL---FDAVAFT-------HVMHLAAQAGVRY 180
D D LAK FDAV + A AG Y
Sbjct: 56 DAKDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHY 96
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 7e-06
Identities = 33/287 (11%), Positives = 77/287 (26%), Gaps = 59/287 (20%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
+++ G G++G + A + + GV +IEG++
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 152 NDAKLLAKLF---DAV-AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
+ + + + D V + +++Q + ++ A K+A
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISSQ---------------------IHIINAIKAAG 104
Query: 208 PQPSIVWASSSSVYGLN-ENVPFSEADRTDQPASLYAATKKAGEEIAHTY---NHIYGLS 263
+ S +G + + + + +TY N
Sbjct: 105 NIKRFL----PSDFGCEEDRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSANCFGAYF 160
Query: 264 ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI---VKG 320
+ L + + + I +Y Y +DI
Sbjct: 161 VNYLLHPSPHPN----------------RNDDIVIYGTGETK---FVLNYEEDIAKYTIK 201
Query: 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI 367
YR N ++ +L+++ E + KK +
Sbjct: 202 VACDPRCCNRIVIYRPP--KNI--ISQNELISLWEAKSGLSFKKVHM 244
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 8e-06
Identities = 43/280 (15%), Positives = 81/280 (28%), Gaps = 53/280 (18%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
+L+ G G++G H+ K G S K + G +++G++
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-----PNSSKTTLLDEFQSLGAIIVKGEL 67
Query: 152 NDAKLLAKLF---DAVAFT-HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
++ + L +L D V + Q +LEA K A
Sbjct: 68 DEHEKLVELMKKVDVVISALAFPQILDQ---------------------FKILEAIKVAG 106
Query: 208 PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
+ S +G+ E+ + +L + I + T
Sbjct: 107 NIKRFL----PSDFGVEED----RINALPPFEALIERKRMIRRAIEEA-----NIPYT-- 151
Query: 268 RFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327
+ + R ITVY Y DI +
Sbjct: 152 --YVSANCF--ASYFINYLLRPYDPKDEITVYGTGEAK---FAMNYEQDIGLYTIKVATD 204
Query: 328 SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI 367
I+ +T+ +T +L++ E+ + K KK +
Sbjct: 205 PRALNRVVIYR-PSTNIITQLELISRWEKKIGKKFKKIHV 243
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 28/251 (11%)
Query: 83 AQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH 142
A H G + V G GFV + + L ++G V DP +K LL
Sbjct: 2 ATQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNT-----TVRDPDNQKKVSHLLELQ 56
Query: 143 G---VFVIEGDINDAKLLAKLFDAVA-FTHVMHLAAQAGVRYAMQNPHSY-VHSNIAGLV 197
+ + D+ D +A V H+A V +A ++P + + I G+V
Sbjct: 57 ELGDLKIFRADLTDELSFE---APIAGCDFVFHVA--TPVHFASEDPENDMIKPAIQGVV 111
Query: 198 TLLEACKSANPQPSIVWASS-SSVYGLNE---NVPFSEADRTD--------QPASLYAAT 245
+++AC A ++ SS ++V + E + TD P Y A+
Sbjct: 112 NVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPAS 171
Query: 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDM-AYFSFTRNILQGKPITVYRGKNH 304
K E+ A + + + + + G D+ + +++ G + K
Sbjct: 172 KTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGM 231
Query: 305 VDLARDFTYID 315
L+ +
Sbjct: 232 QMLSGSVSIAH 242
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* Length = 299 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 36/192 (18%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M++L+ G G VG + +L G+ ++ LD GD
Sbjct: 1 MNILLFGKTGQVGWELQRSLAPVGN-LIALD--------------------VHSKEFCGD 39
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
++ K +A+ + +++ AA V A P N + + +A
Sbjct: 40 FSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAW- 98
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEE--IAHTYNHIYGLSITGLR 268
+V S+ V+ ++P+ E D T P ++Y TK AGE+ + H+ I R
Sbjct: 99 -VVHYSTDYVFPGTGDIPWQETDATS-PLNVYGKTKLAGEKALQDNCPKHL----I--FR 150
Query: 269 FFT--VYGPWGR 278
T VY G
Sbjct: 151 --TSWVYAGKGN 160
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 48/239 (20%), Positives = 90/239 (37%), Gaps = 32/239 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVG-LDNFNNYYDPSLKKARKALLNNHG----VFVI 147
V VTG GF+G+ + +L + G V + DP K+ L N G +
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRA-----DPERKRDVSFLTNLPGASEKLHFF 58
Query: 148 EGDINDAKLLAKLFDAVA-FTHVMHLAAQAGVRYAMQNPHSY-VHSNIAGLVTLLEACKS 205
D+++ A A+ + H A + + +A+ P + G + +L+AC +
Sbjct: 59 NADLSNPDSFA---AAIEGCVGIFHTA--SPIDFAVSEPEEIVTKRTVDGALGILKACVN 113
Query: 206 ANPQPSIVWASSSS--VYGLNENVPFSEADRTD--------QPASLYAATKKAGEEIAHT 255
+ ++ SS S + + E+D +D YA +K E+
Sbjct: 114 SKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLE 173
Query: 256 YNHIYGLSITGLRFFTVYGPWGRPDM-AYFSFTRNILQGKPITVYRGKN---HV-DLAR 309
+ G+ + L + G + P + ++ GK + + HV D+AR
Sbjct: 174 FGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVAR 232
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 29/110 (26%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKARKALLNNHGVFVIE 148
S+ VTGA G +G V L K+ ++ + + + + L + GV V
Sbjct: 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAI-----VRNV----EKASTLADQGVEVRH 51
Query: 149 GDINDAKLLAKLFDAV------------------AFTHVMHLAAQAGVRY 180
GD N + L K F V +V+ A AGV++
Sbjct: 52 GDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKH 101
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 6e-05
Identities = 35/281 (12%), Positives = 83/281 (29%), Gaps = 47/281 (16%)
Query: 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
VL+ GA GF+G V+ A L K L + G ++ G I
Sbjct: 12 RVLIAGATGFIGQFVATASLDAHRPTYILARPGP--RSPSKAKIFKALEDKGAIIVYGLI 69
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
N+ + + K+ V+ + + L++A K+
Sbjct: 70 NEQEAMEKILKEHEIDIVVSTVGGESILDQ---------------IALVKAMKAVGTIKR 114
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
+ + + AD + ++Y ++ + + + G+ T +
Sbjct: 115 FLPSEF--------GHDVNRADPVEPGLNMYREKRRVRQLVEES-----GIPFT----YI 157
Query: 272 VYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV----DLARDFTYIDDIVKGCLGSL-D 326
++ N + + + ++ F DI K + ++ D
Sbjct: 158 CCNSI----ASW--PYYNNIHPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDD 211
Query: 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI 367
N + + +L ++ E+ + + +
Sbjct: 212 VRTLNKSVHFRPSCNC--LNINELASVWEKKIGRTLPRVTV 250
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 9e-05
Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG---- 143
S +V VTGA+GF+G+ + + L +RG V DP+ K K LL+
Sbjct: 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRA-----TVRDPTNVKKVKHLLDLPKAETH 57
Query: 144 VFVIEGDINDAKLLAKLFDAVA-FTHVMHLAAQAGVRYAMQNPHSY-VHSNIAGLVTLLE 201
+ + + D+ D +A+ T V H+A + + ++P + + I G++ +++
Sbjct: 58 LTLWKADLADEGSFD---EAIKGCTGVFHVA--TPMDFESKDPENEVIKPTIEGMLGIMK 112
Query: 202 ACKSANPQPSIVWASSSS--VYGLNENVPFSEADRTD--------QPASLYAATKKAGEE 251
+C +A +V+ SS+ ++ + E+ +D A +Y +K E+
Sbjct: 113 SCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQ 172
Query: 252 IA 253
A
Sbjct: 173 AA 174
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 9e-05
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 28/108 (25%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
M++++TGA G +GTH++ D + + V V +
Sbjct: 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIG-----VRNV----EKVPDDWRGKVSVRQL 51
Query: 150 DINDAKLLAKLFDAV------------------AFTHVMHLAAQAGVR 179
D + + + + F + ++++ A Q+GV
Sbjct: 52 DYFNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVA 99
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 20/134 (14%), Positives = 36/134 (26%), Gaps = 30/134 (22%)
Query: 91 MS-----VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVF 145
M+ + V GA G G + G V + + L V
Sbjct: 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVH-----SLK-GLIAEELQAIPNVT 54
Query: 146 VIEGDI-NDAKLLAKLFDAVAFTHVMHLAAQAGVR--YAMQNPHSYVHSNIAGLVTLLEA 202
+ +G + N+ L+ G + + I L +A
Sbjct: 55 LFQGPLLNNVPLMD--------------TLFEGAHLAFINTTSQAGDEIAIG--KDLADA 98
Query: 203 CKSANPQPSIVWAS 216
K A +++S
Sbjct: 99 AKRAGTIQHYIYSS 112
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 27/105 (25%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+ +TGA G +G +V +L K +V + +P A+ L G+ V + D
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAI-----VRNP----AKAQALAAQGITVRQAD 52
Query: 151 INDAKLLAKLFDAV----------------AFTHVMHLAAQAGVR 179
D L V +V++ A AGV+
Sbjct: 53 YGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVK 97
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 421 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.98 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.97 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.97 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.97 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.97 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.97 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.97 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.96 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.96 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.96 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.96 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.96 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.96 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.96 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.96 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.96 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.96 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.96 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.96 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.96 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.96 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.96 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.96 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.96 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.96 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.96 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.96 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.96 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.96 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.96 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.96 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.96 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.96 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.96 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.96 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.96 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.96 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.95 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.95 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.95 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.95 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.95 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.95 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.95 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.95 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.95 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.95 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.95 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.95 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.95 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.95 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.95 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.95 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.95 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.95 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.95 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.95 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.95 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.95 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.95 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.95 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.95 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.95 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.95 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.95 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.95 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.95 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.95 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.95 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.95 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.95 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.95 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.95 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.95 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.95 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.95 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.95 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.95 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.95 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.95 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.95 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.95 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.95 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.95 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.95 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.95 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.95 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.95 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.95 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.95 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.95 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.95 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.95 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.95 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.95 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.95 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.95 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.95 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.95 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.95 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.95 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.95 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.95 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.95 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.95 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.95 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.95 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.95 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.95 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.95 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.95 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.95 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.95 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.95 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.95 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.95 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.95 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.95 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.95 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.95 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.95 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.95 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.95 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.95 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.94 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.94 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.94 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.94 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.94 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.94 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.94 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.94 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.94 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.94 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.94 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.94 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.94 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.94 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.94 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.94 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.94 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.94 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.94 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.94 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.94 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.94 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.94 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.94 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.94 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.94 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.94 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.94 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.94 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.94 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.94 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.94 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.94 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.94 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.94 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.94 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.94 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.94 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.94 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.94 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.94 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.94 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.94 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.94 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.94 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.94 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.94 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.94 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.94 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.93 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.93 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.93 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.93 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.93 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.93 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.93 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.93 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.93 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.93 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.93 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.93 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.93 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.93 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.93 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.93 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.93 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.93 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.93 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.93 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.93 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.93 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.93 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.93 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.92 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.92 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.92 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.92 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.92 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.92 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.92 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.91 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.91 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.91 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.91 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.91 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.91 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.91 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.9 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.89 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.89 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.89 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.87 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.87 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.86 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.86 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.86 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.86 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.85 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.83 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.83 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.82 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.8 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.79 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.76 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.75 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.75 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.74 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.74 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.72 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.57 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.52 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.26 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.16 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.08 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.07 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.86 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.75 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.74 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.73 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.69 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.64 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.63 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.63 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.57 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.42 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.41 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.39 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.38 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.31 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.27 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.26 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.24 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.18 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.08 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.06 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.94 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.92 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.91 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.88 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 97.88 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.87 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.85 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.82 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.81 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.81 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.8 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.78 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.77 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.75 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.72 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.72 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.71 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.69 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.64 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.63 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.63 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.6 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.59 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.58 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.57 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.54 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.51 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.5 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.5 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.5 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.49 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.48 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.47 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.46 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.44 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.43 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.43 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.41 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 97.41 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.39 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.39 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.38 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.37 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.37 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.36 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.34 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.31 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.25 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.22 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.22 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.21 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.21 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.2 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.2 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.19 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.18 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.16 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.15 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.13 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.12 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.09 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.08 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.08 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.06 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.05 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 97.05 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.03 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.02 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.01 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.0 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.0 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.99 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.96 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.95 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.93 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.9 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.89 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.89 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.86 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.85 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.83 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.82 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.76 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.76 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.69 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.67 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 96.66 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.6 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.54 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.52 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.5 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.5 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.49 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.47 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.45 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.43 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.43 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.39 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.39 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.39 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.37 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.36 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.35 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.33 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.32 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.29 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.26 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.25 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.24 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.23 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.23 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.23 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.23 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.18 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.17 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.14 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.1 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.07 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.04 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.02 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.0 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.0 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.99 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.99 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.99 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.98 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.96 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 95.95 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.95 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.94 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.94 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 95.94 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.93 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.9 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 95.89 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.89 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 95.88 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.87 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.85 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.84 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 95.84 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 95.82 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.82 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 95.81 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 95.8 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.8 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 95.75 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.75 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.74 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.72 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.69 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 95.69 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.69 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.68 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.68 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.66 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 95.63 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.62 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.61 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.58 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.55 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=377.83 Aligned_cols=317 Identities=30% Similarity=0.476 Sum_probs=270.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--cCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL--NNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
+++|+||||||+||||++|+++|+++|++|++++|+................ ...++.++.+|++|.+++.++++++
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 101 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV- 101 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC-
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC-
Confidence 5789999999999999999999999999999999977644333322211100 0168999999999999999999965
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
|+|||+||.........++...+++|+.|+.+++++|++.+++ +||++||.++||.....+++|+++. .|.+.|+.+
T Consensus 102 -d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 178 (351)
T 3ruf_A 102 -DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-SFTYAASSSTYGDHPALPKVEENIG-NPLSPYAVT 178 (351)
T ss_dssp -SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEecHHhcCCCCCCCCccCCCC-CCCChhHHH
Confidence 9999999987766677788899999999999999999999865 9999999999998888888888775 778999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
|+++|.+++.+.+++|++++++||++||||+.... ..+..++..+..++++.++ ++++..++|+|++|+|+++
T Consensus 179 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~Dva~a~ 255 (351)
T 3ruf_A 179 KYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYIN---GDGETSRDFCYIDNVIQMN 255 (351)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEe---CCCCeEEeeEEHHHHHHHH
Confidence 99999999999988999999999999999987654 5678888999999998887 5788999999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccc-----cceecCCCCCCCCcccCChHHHHHHcCCCcCCC
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK-----KNVIEMPGNGDVPFTHANISSAQKEFGYRPTTD 396 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-----~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~ 396 (421)
+.++... ....+++||+++++++|+.|+++.+.+.+|.+.. ....+ ....+.....+|++|+++.|||+|+++
T Consensus 256 ~~~~~~~-~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~~p~~~ 333 (351)
T 3ruf_A 256 ILSALAK-DSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYRE-FRSGDVRHSQADVTKAIDLLKYRPNIK 333 (351)
T ss_dssp HHHHTCC-GGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEEC-CCTTCCSBCCBCCHHHHHHHCCCCCCC
T ss_pred HHHHhhc-cccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccC-CCCCccceeeeCHHHHHHHhCCCCCCC
Confidence 9998873 1356899999999999999999999999998322 21222 234455667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 043169 397 LQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 397 l~e~l~~~~~~~~~~~~ 413 (421)
++|+|+++++||+++.+
T Consensus 334 ~~~~l~~~~~~~~~~~~ 350 (351)
T 3ruf_A 334 IREGLRLSMPWYVRFLK 350 (351)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999865
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=374.60 Aligned_cols=318 Identities=24% Similarity=0.367 Sum_probs=261.1
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhh
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
++.+++|+||||||+||||++|+++|+++| ++|++++|......... ........++.++.+|++|.+++.++++
T Consensus 19 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 95 (346)
T 4egb_A 19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNN---VKSIQDHPNYYFVKGEIQNGELLEHVIK 95 (346)
T ss_dssp -----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGG---GTTTTTCTTEEEEECCTTCHHHHHHHHH
T ss_pred ccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhh---hhhhccCCCeEEEEcCCCCHHHHHHHHh
Confidence 344678999999999999999999999999 67888887653222111 1111223689999999999999999999
Q ss_pred ccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCC-CCCCCCCCCCCCCCCCh
Q 043169 163 AVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLN-ENVPFSEADRTDQPASL 241 (421)
Q Consensus 163 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~-~~~~~~e~~~~~~~~~~ 241 (421)
+.++|+|||+||.........++...+++|+.|+.+++++|++.+++ +||++||.++|+.. ...+++|+++. .|.+.
T Consensus 96 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vy~~~~~~~~~~E~~~~-~p~~~ 173 (346)
T 4egb_A 96 ERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTDEVYGSLGKTGRFTEETPL-APNSP 173 (346)
T ss_dssp HHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEGGGGCCCCSSCCBCTTSCC-CCCSH
T ss_pred hcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCchHHhCCCCcCCCcCCCCCC-CCCCh
Confidence 86679999999987665566788899999999999999999999875 99999999999976 45678887765 78899
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 242 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 242 Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
|+.+|+++|.+++.+++++|++++++||++||||+......+..++..+..++++.++ ++++..++|+|++|+|+++
T Consensus 174 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~ 250 (346)
T 4egb_A 174 YSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLY---GDGLNVRDWLHVTDHCSAI 250 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEE---TTSCCEECEEEHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceee---CCCCeEEeeEEHHHHHHHH
Confidence 9999999999999999989999999999999999887777888999999999998887 5788999999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHH
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGL 401 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l 401 (421)
+.+++.+. .+++||+++++++++.|+++.+.+.+|.+..................+|++|+++.|||+|+++++|+|
T Consensus 251 ~~~~~~~~---~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l 327 (346)
T 4egb_A 251 DVVLHKGR---VGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQGL 327 (346)
T ss_dssp HHHHHHCC---TTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCCCCHHHHH
T ss_pred HHHHhcCC---CCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCCCCHHHHH
Confidence 99999872 678999999999999999999999999876533332233445556679999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 043169 402 KKFVRWYLSYYG 413 (421)
Q Consensus 402 ~~~~~~~~~~~~ 413 (421)
+++++||+++.+
T Consensus 328 ~~~~~~~~~~~~ 339 (346)
T 4egb_A 328 QETVQWYEKNEE 339 (346)
T ss_dssp HHHHHHHHHCHH
T ss_pred HHHHHHHHhhhh
Confidence 999999998654
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=367.43 Aligned_cols=320 Identities=25% Similarity=0.371 Sum_probs=265.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.+|+||||||+||||++++++|+++|++|++++|+.+........... ....++.++.+|++|.+++.++++..++|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEK--ITGKTPAFHETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHH--HHSCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHh--hcCCCceEEEeecCCHHHHHHHHhccCCcE
Confidence 578999999999999999999999999999999988766555443322 224678999999999999999999767799
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
||||||.........++...+++|+.++.++++++++.+.+ +||++||.++||.....+++|+.+. .+.+.|+.||.+
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e~~~~-~~~~~Y~~sK~~ 159 (341)
T 3enk_A 82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RIVFSSSATVYGVPERSPIDETFPL-SATNPYGQTKLM 159 (341)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGBCSCSSSSBCTTSCC-BCSSHHHHHHHH
T ss_pred EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEecceEecCCCCCCCCCCCCC-CCCChhHHHHHH
Confidence 99999987766566777889999999999999999998865 9999999999998877888888765 678999999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEEeccccCCCCC----------CCChHHHHHHHHHcC-CCeEEEec---CCCCcceeeccc
Q 043169 249 GEEIAHTYNHIYG-LSITGLRFFTVYGPWGR----------PDMAYFSFTRNILQG-KPITVYRG---KNHVDLARDFTY 313 (421)
Q Consensus 249 ~e~~~~~~~~~~g-i~~~~vrp~~v~G~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~i~ 313 (421)
+|.+++.++.+++ ++++++||++||||+.. ....++.+....... .++.++.. .+++++.++|+|
T Consensus 160 ~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 239 (341)
T 3enk_A 160 AEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIH 239 (341)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEE
T ss_pred HHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEE
Confidence 9999999998875 99999999999999542 133444444433332 44555521 016789999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCc
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRP 393 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p 393 (421)
++|+|++++.+++.......+++||+++++++|+.|+++.+.+.+|.+.+....+. +..+.....+|++|+++.|||+|
T Consensus 240 v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p 318 (341)
T 3enk_A 240 VVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVAR-RPGDVAECYANPAAAAETIGWKA 318 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCCSEECBCCHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCC-CCCCccccccCHHHHHHHcCCCC
Confidence 99999999999986211245799999999999999999999999999877655553 45566677899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC
Q 043169 394 TTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 394 ~~~l~e~l~~~~~~~~~~~~ 413 (421)
+++++|+|+++++||+++.+
T Consensus 319 ~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 319 ERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp CCCHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999998754
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=357.88 Aligned_cols=298 Identities=23% Similarity=0.324 Sum_probs=258.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+||||||+||||++|+++|+++|++|++++|+....+ . .++.++.+|++ .+++.++++++ |+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~----------~~~~~~~~Dl~-~~~~~~~~~~~--d~V 66 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA--I----------NDYEYRVSDYT-LEDLINQLNDV--DAV 66 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----------------CCEEEECCCC-HHHHHHHTTTC--SEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc--C----------CceEEEEcccc-HHHHHHhhcCC--CEE
Confidence 479999999999999999999999999999999732111 1 27899999999 99999999965 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||+||..... ++...+++|+.++.+++++|++.+++ |||++||.++|+.....+++|+++. .|.+.|+.+|.++
T Consensus 67 ih~a~~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~-r~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~~~ 140 (311)
T 3m2p_A 67 VHLAATRGSQ----GKISEFHDNEILTQNLYDACYENNIS-NIVYASTISAYSDETSLPWNEKELP-LPDLMYGVSKLAC 140 (311)
T ss_dssp EECCCCCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCCGGGCSBCTTSCC-CCSSHHHHHHHHH
T ss_pred EEccccCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCCCCCCCC-CCCchhHHHHHHH
Confidence 9999986533 77889999999999999999999865 9999999999998877888888765 6789999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
|.+++.+.++.|++++++||+++|||+......+..++..+..++++.++ ++++..++|+|++|+|++++.+++.+.
T Consensus 141 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~v~v~Dva~a~~~~~~~~~ 217 (311)
T 3m2p_A 141 EHIGNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLH---ANSVAKREFLYAKDAAKSVIYALKQEK 217 (311)
T ss_dssp HHHHHHHHHHSCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEES---SBCCCCEEEEEHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEe---cCCCeEEceEEHHHHHHHHHHHHhcCC
Confidence 99999999988999999999999999887667788899999999998886 577899999999999999999998762
Q ss_pred CCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHHHHHHHH
Q 043169 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409 (421)
Q Consensus 330 ~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~ 409 (421)
.+++||+++++++|+.|+++.+.+.+|.+......+.+.........+|++|+++.|||+|+++++|+|+++++||+
T Consensus 218 ---~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~ 294 (311)
T 3m2p_A 218 ---VSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLLMR 294 (311)
T ss_dssp ---CCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHHHHC
T ss_pred ---CCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence 68999999999999999999999999998776655543455666778999999999999999999999999999998
Q ss_pred HHhCC
Q 043169 410 SYYGY 414 (421)
Q Consensus 410 ~~~~~ 414 (421)
+..+.
T Consensus 295 ~~~~~ 299 (311)
T 3m2p_A 295 GLDDV 299 (311)
T ss_dssp C----
T ss_pred hcccC
Confidence 77653
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-46 Score=360.96 Aligned_cols=317 Identities=30% Similarity=0.460 Sum_probs=262.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--cCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL--NNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
+++|+||||||+||||++++++|+++|++|++++|+................ ...++.++.+|++|.+++.++++++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 103 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV- 103 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC-
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC-
Confidence 4678999999999999999999999999999999976432222222111110 1257899999999999999999865
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
|+|||+||......+..++...+++|+.|+.+++++|++.+++ +||++||.++|+.....+++|+++. .+.+.|+.+
T Consensus 104 -d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~E~~~~-~~~~~Y~~s 180 (352)
T 1sb8_A 104 -DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVEDTIG-KPLSPYAVT 180 (352)
T ss_dssp -SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhcCCCCCCCCCCCCCC-CCCChhHHH
Confidence 9999999987654455678889999999999999999998865 9999999999998777788887765 678999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
|+++|.+++.+++++|++++++||++||||+.... ..+..++..+.++.++.++ ++++..++|+|++|+|+++
T Consensus 181 K~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~Dva~a~ 257 (352)
T 1sb8_A 181 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQAN 257 (352)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEe---CCCCceEeeEEHHHHHHHH
Confidence 99999999999988899999999999999976543 4567788888888887776 5778899999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHh---CCccccc--eecCCCCCCCCcccCChHHHHHHcCCCcCCC
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHL---KVKAKKN--VIEMPGNGDVPFTHANISSAQKEFGYRPTTD 396 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~---g~~~~~~--~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~ 396 (421)
+.++... ....+++||+++++++|+.|+++.+.+.+ |.+.... ..+ .+........+|++|+++.|||+|+++
T Consensus 258 ~~~~~~~-~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~~p~~~ 335 (352)
T 1sb8_A 258 LLAATAG-LDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRD-FREGDVRHSLADISKAAKLLGYAPKYD 335 (352)
T ss_dssp HHHHTCC-GGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEEC-CCTTCCSBCCBCCHHHHHHTCCCCCCC
T ss_pred HHHHhcc-ccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecC-CCccchhhccCCHHHHHHHhCCCCCCC
Confidence 9988762 12457999999999999999999999999 8765422 222 223445566789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 043169 397 LQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 397 l~e~l~~~~~~~~~~~~ 413 (421)
++|+|+++++||+++.+
T Consensus 336 ~~e~l~~~~~~~~~~~~ 352 (352)
T 1sb8_A 336 VSAGVALAMPWYIMFLK 352 (352)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999998754
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-46 Score=356.51 Aligned_cols=303 Identities=25% Similarity=0.373 Sum_probs=255.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.+.|+||||||+||||++++++|+++|++|++++|+.+. +. . ++.++.+|++|.+++.+++++.++|
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~---------l---~~~~~~~Dl~d~~~~~~~~~~~~~d 76 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL---------P---NVEMISLDIMDSQRVKKVISDIKPD 76 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC---------T---TEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc---------c---eeeEEECCCCCHHHHHHHHHhcCCC
Confidence 356899999999999999999999999999999997653 11 1 6889999999999999999886679
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCC--CCCCCCCCCCCCCCCChHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLN--ENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~--~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+||||||......+..++...+++|+.|+.+++++|++.+..++||++||.++|+.. ...+++|+++. .+.+.|+.+
T Consensus 77 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~-~~~~~Y~~s 155 (321)
T 2pk3_A 77 YIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGVS 155 (321)
T ss_dssp EEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCC-BCCSHHHHH
T ss_pred EEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCC-CCCCccHHH
Confidence 999999987665566678899999999999999999775323499999999999876 56678887755 678899999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHc---C--CCeEEEecCCCCcceeecccHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ---G--KPITVYRGKNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~i~v~Dva~a 320 (421)
|+++|.+++.+++++|++++++||+++|||+......+..++..+.. + .++..+ ++++..++|+|++|+|++
T Consensus 156 K~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~v~v~Dva~a 232 (321)
T 2pk3_A 156 KASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKV---GNLEAVRDFTDVRDIVQA 232 (321)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEE---SCSSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEe---CCCCcEEeeEEHHHHHHH
Confidence 99999999999988899999999999999987766666777777666 6 566665 567889999999999999
Q ss_pred HHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecC-CCCCCCCcccCChHHHHHHcCCCcCCCHHH
Q 043169 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM-PGNGDVPFTHANISSAQKEFGYRPTTDLQT 399 (421)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e 399 (421)
++.+++.+ ..+++||+++++++++.|+++.+.+.+|.+.+....|. .+........+|++|+++.|||+|+++++|
T Consensus 233 ~~~~~~~~---~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e 309 (321)
T 2pk3_A 233 YWLLSQYG---KTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLEK 309 (321)
T ss_dssp HHHHHHHC---CTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHHHCCCCCSCHHH
T ss_pred HHHHHhCC---CCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHHcCCCcCCCHHH
Confidence 99999876 34789999999999999999999999998765444331 123344567799999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043169 400 GLKKFVRWYLS 410 (421)
Q Consensus 400 ~l~~~~~~~~~ 410 (421)
+|+++++||++
T Consensus 310 ~l~~~~~~~~~ 320 (321)
T 2pk3_A 310 SLFEILQSYRQ 320 (321)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999999975
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-46 Score=355.67 Aligned_cols=310 Identities=27% Similarity=0.424 Sum_probs=254.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
++|+||||||+||||++++++|+++| ++|++++|......... . .......++.++.+|++|.+++.+++.++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~--~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 76 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPAN--L-KDLEDDPRYTFVKGDVADYELVKELVRKV-- 76 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGG--G-TTTTTCTTEEEEECCTTCHHHHHHHHHTC--
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhH--H-hhhccCCceEEEEcCCCCHHHHHHHhhCC--
Confidence 46789999999999999999999997 89999998653211110 0 01111357899999999999999999655
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK 246 (421)
|+||||||......+..+++..+++|+.|+.+++++|.+.+..++||++||.++||.....+++|+++. .+.+.|+.||
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~sK 155 (336)
T 2hun_A 77 DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRL-MPSSPYSATK 155 (336)
T ss_dssp SEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCC-CCCSHHHHHH
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCC-CCCCccHHHH
Confidence 999999998765555678889999999999999999998865459999999999997766678877654 6778999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
.++|.+++.+++++|++++++||++||||.......+..++..+..+.++.++ +++++.++|+|++|+|++++.+++
T Consensus 156 ~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~~~~~~~~ 232 (336)
T 2hun_A 156 AASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIY---GTGKNVRDWLYVEDHVRAIELVLL 232 (336)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEE---TC---CEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEe---CCCCceeeeEEHHHHHHHHHHHHh
Confidence 99999999999888999999999999999876556677888888888888776 567889999999999999999997
Q ss_pred cCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccc-cceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHHHH
Q 043169 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK-KNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFV 405 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~ 405 (421)
.+ ..+++||+++++++++.|+++.+.+.+|.+.+ ....+ .+........+|++|+++.|||+|+++++|+|++++
T Consensus 233 ~~---~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~ 308 (336)
T 2hun_A 233 KG---ESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVE-DRPGHDLRYSLDSWKITRDLKWRPKYTFDEGIKKTI 308 (336)
T ss_dssp HC---CTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEEC-CCTTCCCCCCBCCHHHHHHHCCCCSSCHHHHHHHHH
T ss_pred CC---CCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccC-CCCCchhhhcCCHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 65 35789999999999999999999999998653 22222 223333445689999999999999999999999999
Q ss_pred HHHHHH
Q 043169 406 RWYLSY 411 (421)
Q Consensus 406 ~~~~~~ 411 (421)
+||+++
T Consensus 309 ~~~~~~ 314 (336)
T 2hun_A 309 DWYLKN 314 (336)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999876
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=356.87 Aligned_cols=303 Identities=26% Similarity=0.406 Sum_probs=252.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++|+++|+++|++|++++|+.+..... ...++.++.+|++|.+ +.++++. |+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~~Dl~d~~-~~~~~~~---d~vi 67 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF---------VNPSAELHVRDLKDYS-WGAGIKG---DVVF 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGG---------SCTTSEEECCCTTSTT-TTTTCCC---SEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhh---------cCCCceEEECccccHH-HHhhcCC---CEEE
Confidence 6899999999999999999999999999999976543221 1467899999999988 7777765 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+||.........++...+++|+.|+.+++++|++.+++ +||++||.++||.....+++|+.+. .|.+.|+.+|.++|
T Consensus 68 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~vyg~~~~~~~~e~~~~-~p~~~Y~~sK~~~e 145 (312)
T 3ko8_A 68 HFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGE 145 (312)
T ss_dssp ECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcHHHhCCCCCCCCCCCCCC-CCCChHHHHHHHHH
Confidence 999976656667788899999999999999999998865 9999999999998887888887655 67899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCC-CeEEEecCCCCcceeecccHHHHHHHHHHhhhcC-
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGK-PITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS- 328 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~- 328 (421)
.+++.+++++|++++++||++||||+... ..+..++..+..+. .+.++ +++++.++|+|++|+|++++.+++..
T Consensus 146 ~~~~~~~~~~g~~~~~lrp~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~~~~~~ 221 (312)
T 3ko8_A 146 VMCATYARLFGVRCLAVRYANVVGPRLRH-GVIYDFIMKLRRNPNVLEVL---GDGTQRKSYLYVRDAVEATLAAWKKFE 221 (312)
T ss_dssp HHHHHHHHHHCCEEEEEEECEEECTTCCS-SHHHHHHHHHHHCTTEEEEC-------CEECEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeeccccCcCCCC-ChHHHHHHHHHhCCCCeEEc---CCCCeEEeeEEHHHHHHHHHHHHHhcc
Confidence 99999999899999999999999997654 45667777777764 44454 57789999999999999999999871
Q ss_pred CCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCC-----CCCCCCcccCChHHHHHHcCCCcCCCHHHHHHH
Q 043169 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP-----GNGDVPFTHANISSAQKEFGYRPTTDLQTGLKK 403 (421)
Q Consensus 329 ~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~-----~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~ 403 (421)
.....+++||+++++++++.|+++.+.+.+|.+......+.. ...+.....+|++|+++.|||+|+++++|+|++
T Consensus 222 ~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~ 301 (312)
T 3ko8_A 222 EMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKK 301 (312)
T ss_dssp HSCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCSSCHHHHHHH
T ss_pred ccCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCHHHHHHH
Confidence 013568999999999999999999999999987765554321 234455678999999999999999999999999
Q ss_pred HHHHHHHHh
Q 043169 404 FVRWYLSYY 412 (421)
Q Consensus 404 ~~~~~~~~~ 412 (421)
+++||+++.
T Consensus 302 ~~~~~~~~~ 310 (312)
T 3ko8_A 302 TAEDLAKEL 310 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999998763
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=357.17 Aligned_cols=306 Identities=25% Similarity=0.412 Sum_probs=247.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++|+++|+++| .|+++++....... ....++.++.+|++| +++.++++++ |+||
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~---------~~~~~~~~~~~Dl~~-~~~~~~~~~~--d~vi 68 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEE---------FVNEAARLVKADLAA-DDIKDYLKGA--EEVW 68 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGG---------GSCTTEEEECCCTTT-SCCHHHHTTC--SEEE
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChh---------hcCCCcEEEECcCCh-HHHHHHhcCC--CEEE
Confidence 689999999999999999999999 55556554432211 124578999999999 8999999865 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+|+......+..++...+++|+.|+.++++++++.+.+ +||++||.++||.....+++|+.+. .+.+.|+.+|.++|
T Consensus 69 h~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~sK~~~e 146 (313)
T 3ehe_A 69 HIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTSTVYGEAKVIPTPEDYPT-HPISLYGASKLACE 146 (313)
T ss_dssp ECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchHHhCcCCCCCCCCCCCC-CCCCHHHHHHHHHH
Confidence 999976555566778899999999999999999998865 9999999999998887888887754 67899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcC-CCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQG-KPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
.+++.+++++|++++++||++||||+... ..+..++..+..+ .++.++ +++++.++|+|++|+|++++.+++..
T Consensus 147 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~~~~~- 221 (313)
T 3ehe_A 147 ALIESYCHTFDMQAWIYRFANVIGRRSTH-GVIYDFIMKLKRNPEELEIL---GNGEQNKSYIYISDCVDAMLFGLRGD- 221 (313)
T ss_dssp HHHHHHHHHTTCEEEEEECSCEESTTCCC-SHHHHHHHHHHHCTTEEEES---TTSCCEECCEEHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHhcCCCEEEEeeccccCcCCCc-ChHHHHHHHHHcCCCceEEe---CCCCeEEeEEEHHHHHHHHHHHhccC-
Confidence 99999999999999999999999997664 4566777777776 445554 67889999999999999999999833
Q ss_pred CCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCC--CCCCCCcccCChHHHHHHcCCCcCCCHHHHHHHHHHH
Q 043169 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP--GNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRW 407 (421)
Q Consensus 330 ~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~--~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~ 407 (421)
..+++||+++++++++.|+++.+.+.+|.+..+...+.+ ...+.....+|++|+ ++|||+|+++++|+|+++++|
T Consensus 222 --~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~-~~lG~~p~~~~~e~l~~~~~~ 298 (313)
T 3ehe_A 222 --ERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKL-KRLGWKPRYNSEEAVRMAVRD 298 (313)
T ss_dssp --SSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHH-HHHTCCCSCCHHHHHHHHHHH
T ss_pred --CCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHH-HHcCCCCCCCHHHHHHHHHHH
Confidence 568999999999999999999999999987655444322 233445567899999 569999999999999999999
Q ss_pred HHHHhCCCCCCC
Q 043169 408 YLSYYGYNRGKR 419 (421)
Q Consensus 408 ~~~~~~~~~~~~ 419 (421)
|+++.+....++
T Consensus 299 ~~~~~~~~~~~~ 310 (313)
T 3ehe_A 299 LVEDLDEEGHHH 310 (313)
T ss_dssp HHHHHHC-----
T ss_pred HHhCcccccccc
Confidence 999998765544
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-47 Score=368.42 Aligned_cols=310 Identities=22% Similarity=0.338 Sum_probs=260.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC-CHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN-DAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~~ 165 (421)
+.+|+||||||+||||++|+++|+++ |++|++++|+.+..... ....+++++.+|++ |.+.+.++++++
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~--------~~~~~v~~~~~Dl~~d~~~~~~~~~~~- 92 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL--------VKHERMHFFEGDITINKEWVEYHVKKC- 92 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG--------GGSTTEEEEECCTTTCHHHHHHHHHHC-
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh--------ccCCCeEEEeCccCCCHHHHHHHhccC-
Confidence 57899999999999999999999998 99999999976543221 12368999999999 999999999976
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCC------CCC
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTD------QPA 239 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~------~~~ 239 (421)
|+|||+||.........++...+++|+.|+.+++++|++.+ + +||++||.++||.....++.|++.+. .|.
T Consensus 93 -d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~-~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~ 169 (372)
T 3slg_A 93 -DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCADEQFDPDASALTYGPINKPR 169 (372)
T ss_dssp -SEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-C-EEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTT
T ss_pred -CEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-C-cEEEeCcHHHhCCCCCCCCCccccccccCCCCCCC
Confidence 99999999987766667888999999999999999999998 4 99999999999988777888877432 456
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 240 SLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+.|+.+|+++|.+++.+.++ |++++++||++||||+... ...+..++..+..++++.++ ++++..++|
T Consensus 170 ~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~ 245 (372)
T 3slg_A 170 WIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLV---DGGSQKRAF 245 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEG---GGGCCEEEC
T ss_pred CcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEe---CCCceEEEE
Confidence 78999999999999999887 9999999999999997642 34677888999999988876 567899999
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCC-CccCHHHHHHHHHHHhCCccccceecCC--------------CCCCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT-SPVTVPKLVNILERHLKVKAKKNVIEMP--------------GNGDVP 376 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~-~~~t~~el~~~l~~~~g~~~~~~~~~~~--------------~~~~~~ 376 (421)
+|++|+|++++.+++.+.....+++||++++ +++|+.|+++.+.+.+|.+......+.. ...+..
T Consensus 246 i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (372)
T 3slg_A 246 TYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQ 325 (372)
T ss_dssp EEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC-------------C
T ss_pred EEHHHHHHHHHHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccCCccccc
Confidence 9999999999999997632356899999994 7999999999999999976553322210 012444
Q ss_pred cccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhC
Q 043169 377 FTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 377 ~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 413 (421)
...+|++|+++.|||+|+++++|+|+++++||+++..
T Consensus 326 ~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 362 (372)
T 3slg_A 326 NRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVA 362 (372)
T ss_dssp CCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTCHH
T ss_pred eeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999987654
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-46 Score=359.23 Aligned_cols=318 Identities=22% Similarity=0.275 Sum_probs=258.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+++|+||||||+||||++|+++|+++|++|++++|+.+......... ....++.++.+|++|.+++.++++++++|
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 82 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETA----RVADGMQSEIGDIRDQNKLLESIREFQPE 82 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHT----TTTTTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhh----ccCCceEEEEccccCHHHHHHHHHhcCCC
Confidence 46799999999999999999999999999999999776544322211 12357899999999999999999987779
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC-CCCCCCCCCCCCCChHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN-VPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~-~~~~e~~~~~~~~~~Y~~sK 246 (421)
+||||||......+..++...+++|+.|+.+++++|++.+..++||++||.++||.... .++.|+++. .+.+.|+.+|
T Consensus 83 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~-~~~~~Y~~sK 161 (357)
T 1rkx_A 83 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAM-GGYDPYSNSK 161 (357)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCB-CCSSHHHHHH
T ss_pred EEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCC-CCCCccHHHH
Confidence 99999997555555677888999999999999999998763349999999999986553 456666544 5788999999
Q ss_pred HHHHHHHHHHHHHh---------CCcEEEEEeccccCCCCCC-CChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHH
Q 043169 247 KAGEEIAHTYNHIY---------GLSITGLRFFTVYGPWGRP-DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDD 316 (421)
Q Consensus 247 ~~~e~~~~~~~~~~---------gi~~~~vrp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 316 (421)
.++|.+++.+++++ |++++++||++||||+... ...+..++..+.++.++.+. +++..++|+|++|
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~v~v~D 237 (357)
T 1rkx_A 162 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIR----NPHAIRPWQHVLE 237 (357)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECS----CTTCEECCEETHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEEC----CCCCeeccEeHHH
Confidence 99999999998765 9999999999999997643 35677888888888877653 4678899999999
Q ss_pred HHHHHHHhhhcC--CCCCCceEEEecCC--CccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCC
Q 043169 317 IVKGCLGSLDTS--AGPAPYRIFNLGNT--SPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYR 392 (421)
Q Consensus 317 va~a~~~~l~~~--~~~~~~~~~~i~~~--~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~ 392 (421)
+|++++.+++.. .....+++||++++ +++|+.|+++.+.+.+|.+.++...+.++..+.....+|++|+++.|||+
T Consensus 238 va~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 317 (357)
T 1rkx_A 238 PLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWH 317 (357)
T ss_dssp HHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCC
T ss_pred HHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCCHHHHHHHhCCC
Confidence 999999988741 11234689999974 57999999999999999876554433323344556679999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhCC
Q 043169 393 PTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 393 p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
|+++++|+|+++++||+++...
T Consensus 318 p~~~l~e~l~~~~~~~~~~~~~ 339 (357)
T 1rkx_A 318 PRWNLNTTLEYIVGWHKNWLSG 339 (357)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998754
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=360.97 Aligned_cols=302 Identities=25% Similarity=0.286 Sum_probs=252.4
Q ss_pred cccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 84 QIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 84 ~~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
..+..++|+||||||+||||++|+++|+++|++|++++|+.+. .++.++.+|++|.+++.+++++
T Consensus 13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~---------------~~~~~~~~Dl~d~~~~~~~~~~ 77 (347)
T 4id9_A 13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG---------------TGGEEVVGSLEDGQALSDAIMG 77 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS---------------SCCSEEESCTTCHHHHHHHHTT
T ss_pred cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC---------------CCccEEecCcCCHHHHHHHHhC
Confidence 3344688999999999999999999999999999999996542 5788999999999999999996
Q ss_pred cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCC--CCCCCCCCCCCCCCCCCh
Q 043169 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGL--NENVPFSEADRTDQPASL 241 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~--~~~~~~~e~~~~~~~~~~ 241 (421)
+ |+|||+||...... .+....+++|+.|+.+++++|++.+++ +||++||.++||. ....+++|+++. .+.+.
T Consensus 78 ~--d~vih~A~~~~~~~--~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~E~~~~-~~~~~ 151 (347)
T 4id9_A 78 V--SAVLHLGAFMSWAP--ADRDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFLPVTEDHPL-CPNSP 151 (347)
T ss_dssp C--SEEEECCCCCCSSG--GGHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSSSBCTTSCC-CCCSH
T ss_pred C--CEEEECCcccCcch--hhHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCCCcCCCCCC-CCCCh
Confidence 5 99999999865432 233789999999999999999998865 9999999999997 556678887765 67899
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEecccc-------------CCCCCC-----------CChHHHHHHHHHcCCCeE
Q 043169 242 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVY-------------GPWGRP-----------DMAYFSFTRNILQGKPIT 297 (421)
Q Consensus 242 Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~-------------G~~~~~-----------~~~~~~~~~~~~~~~~~~ 297 (421)
|+.+|.++|.+++.+.+++|++++++||++|| ||+... ...+..++..+..+.++.
T Consensus 152 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (347)
T 4id9_A 152 YGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSH 231 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCE
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeE
Confidence 99999999999999999899999999999999 775432 345677888888898887
Q ss_pred EEecCCCCcceeec----ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCC
Q 043169 298 VYRGKNHVDLARDF----TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNG 373 (421)
Q Consensus 298 ~~~~~~~~~~~~~~----i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~ 373 (421)
++ ++++..++| +|++|+|++++.+++.+ ...+++||+++++++|+.|+++.+.+.+|.+......+..
T Consensus 232 ~~---g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~--~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~--- 303 (347)
T 4id9_A 232 IL---ARNENGRPFRMHITDTRDMVAGILLALDHP--EAAGGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPGD--- 303 (347)
T ss_dssp EE---EECTTCCBCEECEEEHHHHHHHHHHHHHCG--GGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSC---
T ss_pred Ee---CCCCcccCCccCcEeHHHHHHHHHHHhcCc--ccCCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCc---
Confidence 77 456778889 99999999999999976 2458999999999999999999999999987665433322
Q ss_pred CCCcccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhCCC
Q 043169 374 DVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYN 415 (421)
Q Consensus 374 ~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~ 415 (421)
.....+|++|+++.|||+|+++++|+|+++++||+++..+.
T Consensus 304 -~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~ 344 (347)
T 4id9_A 304 -GVYYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRLAKE 344 (347)
T ss_dssp -CCBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--
T ss_pred -ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 12567899999999999999999999999999999988653
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-45 Score=352.00 Aligned_cols=319 Identities=29% Similarity=0.416 Sum_probs=257.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC------CChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY------YDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
+|+||||||+||||++++++|+++|++|++++|+... .......... ....++.++.+|++|.+++.++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQE--LTGRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHH--HHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHh--ccCCceEEEECCCCCHHHHHHHHHh
Confidence 4799999999999999999999999999999986543 2222222111 1235789999999999999999986
Q ss_pred cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHH
Q 043169 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
.++|+|||+||.........++...+++|+.|+.++++++++.+++ +||++||.++||.....+++|+++..+..+.|+
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~E~~~~~p~~~~Y~ 158 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYG 158 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHH
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEECcHHHhCCCCCCCcCCCCCCCCCCCchH
Confidence 5669999999987654455677889999999999999999998864 999999999999877778888876532278999
Q ss_pred HHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCC------C----CCChHHHHHHHHH-cCCCeEEEecC---CCCcc
Q 043169 244 ATKKAGEEIAHTYNHIYG--LSITGLRFFTVYGPWG------R----PDMAYFSFTRNIL-QGKPITVYRGK---NHVDL 307 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~~g--i~~~~vrp~~v~G~~~------~----~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~ 307 (421)
.+|+++|.+++.++++ + ++++++||+++|||+. . ....++.+...+. .+.++.++... .++++
T Consensus 159 ~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 237 (348)
T 1ek6_A 159 KSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237 (348)
T ss_dssp HHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred HHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCce
Confidence 9999999999999877 5 9999999999999952 1 1345666666666 56677776310 15688
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHH
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQK 387 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~ 387 (421)
.++|+|++|+|++++.+++.+.....+++||+++++++|+.|+++.+.+.+|.+.+....+. ...+.....+|++|+++
T Consensus 238 ~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~ 316 (348)
T 1ek6_A 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR-REGDVAACYANPSLAQE 316 (348)
T ss_dssp EECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCCSEECBCCHHHHH
T ss_pred EEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC-CCccchhhccCHHHHHH
Confidence 99999999999999999986521223489999999999999999999999998766554443 23345566799999999
Q ss_pred HcCCCcCCCHHHHHHHHHHHHHHHhC
Q 043169 388 EFGYRPTTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 388 ~lG~~p~~~l~e~l~~~~~~~~~~~~ 413 (421)
.|||+|+++++|+|+++++||+++..
T Consensus 317 ~lG~~p~~~l~~~l~~~~~w~~~~~~ 342 (348)
T 1ek6_A 317 ELGWTAALGLDRMCEDLWRWQKQNPS 342 (348)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999998643
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=354.53 Aligned_cols=303 Identities=18% Similarity=0.223 Sum_probs=255.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+++|+||||||+||||++|+++|+++|+ +.. .....+.++.+|++|.+++.+++++.++|
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~--------------~~~~~~~~~~~D~~d~~~~~~~~~~~~~d 63 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPG--------------EDWVFVSSKDADLTDTAQTRALFEKVQPT 63 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTT--------------CEEEECCTTTCCTTSHHHHHHHHHHSCCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC------ccc--------------ccccccCceecccCCHHHHHHHHhhcCCC
Confidence 5789999999999999999999999998 100 01124455679999999999999987789
Q ss_pred EEEEcccccCc-hhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCC---CCCCCC-hH
Q 043169 168 HVMHLAAQAGV-RYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADR---TDQPAS-LY 242 (421)
Q Consensus 168 ~vi~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~---~~~~~~-~Y 242 (421)
+|||+||.... .....++...+++|+.|+.+++++|++.+++ +||++||.++||.....+++|+++ +..|.. +|
T Consensus 64 ~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y 142 (319)
T 4b8w_A 64 HVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGY 142 (319)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHH
T ss_pred EEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcchhhcCCCCCCCccccccccCCCCCCcchH
Confidence 99999998653 3456777889999999999999999999865 999999999999888888888862 223444 69
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CChHHHHHHH----HHcCCCeEEEecCCCCcceeecccH
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP----DMAYFSFTRN----ILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
+.+|+++|.+++.+.+++|++++++||++||||+... ...++.++.. +..++++.++ ++++..++|+|+
T Consensus 143 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v 219 (319)
T 4b8w_A 143 SYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVW---GTGNPRRQFIYS 219 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEE---SCSCCEECEEEH
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEe---CCCCeeEEEEeH
Confidence 9999999999999998899999999999999998653 2456666666 7788888887 578899999999
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPT 394 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~ 394 (421)
+|+|++++.+++.+. ...+++||+++++++|+.|+++.+.+.+|.+.++...+.. ........+|++|+++.|||.|.
T Consensus 220 ~Dva~a~~~~~~~~~-~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lg~~p~ 297 (319)
T 4b8w_A 220 LDLAQLFIWVLREYN-EVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTK-SDGQFKKTASNSKLRTYLPDFRF 297 (319)
T ss_dssp HHHHHHHHHHHHHCC-CSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTS-CCCCSCCCBCCHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhccc-cCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCC-CcCcccccCCHHHHHHhcCCCCC
Confidence 999999999998852 2457899999999999999999999999988776665533 34455567999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCC
Q 043169 395 TDLQTGLKKFVRWYLSYYGYNR 416 (421)
Q Consensus 395 ~~l~e~l~~~~~~~~~~~~~~~ 416 (421)
++++|+|+++++||+++.+..|
T Consensus 298 ~~~~~~l~~~~~~~~~~~~~~r 319 (319)
T 4b8w_A 298 TPFKQAVKETCAWFTDNYEQAR 319 (319)
T ss_dssp CCHHHHHHHHHHHHHHSCSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999877543
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=351.31 Aligned_cols=307 Identities=28% Similarity=0.450 Sum_probs=256.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC---C---CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR---G---DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~---g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
|+||||||+||||++++++|+++ | ++|++++|+........ . .......++.++.+|++|.+++.+++.++
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~--~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRAN--L-APVDADPRLRFVHGDIRDAGLLARELRGV 77 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGG--G-GGGTTCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhh--h-hhcccCCCeEEEEcCCCCHHHHHHHhcCC
Confidence 57999999999999999999997 8 99999999653222111 0 01112357899999999999999999655
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHH
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAA 244 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~ 244 (421)
|+|||+||......+..+++..+++|+.|+.+++++|++.+.+ +||++||.++||.....+++|+.+. .+.+.|+.
T Consensus 78 --d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~ 153 (337)
T 1r6d_A 78 --DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAA 153 (337)
T ss_dssp --CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBCTTSCC-CCCSHHHH
T ss_pred --CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCCCCCCCCCCCC-CCCCchHH
Confidence 9999999987655556788899999999999999999998864 9999999999997666677777654 67889999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHh
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGS 324 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 324 (421)
||+++|.+++.+++++|++++++||+++|||+......+..++..+..+.++.++ +++++.++|+|++|+|++++.+
T Consensus 154 sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~ 230 (337)
T 1r6d_A 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLY---GDGANVREWVHTDDHCRGIALV 230 (337)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEE---TTSCCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEe---CCCCeeEeeEeHHHHHHHHHHH
Confidence 9999999999999888999999999999999876666677888888888888776 5678899999999999999999
Q ss_pred hhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccc-cceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHH
Q 043169 325 LDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK-KNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKK 403 (421)
Q Consensus 325 l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~ 403 (421)
++.+ ..+++||+++++++|+.|+++.+.+.+|.+.+ ....+ .+........+|++|+++.|||+|+++++|+|++
T Consensus 231 ~~~~---~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~ 306 (337)
T 1r6d_A 231 LAGG---RAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVA-DRKGHDLRYSLDGGKIERELGYRPQVSFADGLAR 306 (337)
T ss_dssp HHHC---CTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEEC-CCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHH
T ss_pred HhCC---CCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecC-CCCCCcceeecCHHHHHHHcCCCCCCCHHHHHHH
Confidence 9865 35789999999999999999999999998653 22222 2233334456899999999999999999999999
Q ss_pred HHHHHHHH
Q 043169 404 FVRWYLSY 411 (421)
Q Consensus 404 ~~~~~~~~ 411 (421)
+++||+++
T Consensus 307 ~~~~~~~~ 314 (337)
T 1r6d_A 307 TVRWYREN 314 (337)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999875
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=352.00 Aligned_cols=316 Identities=23% Similarity=0.236 Sum_probs=257.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
..+|+||||||+||||++++++|+++|++|++++|+.+...... . .......++.++.+|++|.+++.++++++++|
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 88 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWR--L-RELGIEGDIQYEDGDMADACSVQRAVIKAQPQ 88 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHH--H-HHTTCGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccc--h-hhccccCceEEEECCCCCHHHHHHHHHHcCCC
Confidence 46899999999999999999999999999999999775433211 1 11112357899999999999999999987889
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
+|||+||......+..++...+++|+.|+.+++++|++.++.++||++||.++|+.....+++|+++. .|.+.|+.+|+
T Consensus 89 ~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~~sK~ 167 (335)
T 1rpn_A 89 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPF-YPRSPYGVAKL 167 (335)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCC-CCCChhHHHHH
Confidence 99999998765555677888999999999999999999875349999999999998777788887765 67889999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC---hHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHh
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDM---AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGS 324 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 324 (421)
++|.+++.+++++|++++++||+++|||+..... .+..++..+..+....+.. +++++.++|+|++|+|++++.+
T Consensus 168 ~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~g~~~~~~i~v~Dva~a~~~~ 245 (335)
T 1rpn_A 168 YGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRL--GNVDAKRDWGFAGDYVEAMWLM 245 (335)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE--SCTTCEEECEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEe--CCCcceeceEEHHHHHHHHHHH
Confidence 9999999999888999999999999999765443 2445666667776433222 5778999999999999999999
Q ss_pred hhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCcccc--ceec-CCCCCCCCcccCChHHHHHHcCCCcCCCHHHHH
Q 043169 325 LDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKK--NVIE-MPGNGDVPFTHANISSAQKEFGYRPTTDLQTGL 401 (421)
Q Consensus 325 l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~--~~~~-~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l 401 (421)
++.+. +++||+++++++|+.|+++.+.+.+|.+... ...+ ..++.+.....+|++|+++.|||+|+++++|+|
T Consensus 246 ~~~~~----~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l 321 (335)
T 1rpn_A 246 LQQDK----ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELI 321 (335)
T ss_dssp HHSSS----CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHH
T ss_pred HhcCC----CCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCCCcCCCHHHHH
Confidence 98762 3799999999999999999999999986431 1111 112334455678999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 043169 402 KKFVRWYLSYYG 413 (421)
Q Consensus 402 ~~~~~~~~~~~~ 413 (421)
+++++||+++.+
T Consensus 322 ~~~~~~~~~~~~ 333 (335)
T 1rpn_A 322 RMMVEADLRRVS 333 (335)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999998764
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=349.77 Aligned_cols=312 Identities=23% Similarity=0.355 Sum_probs=254.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+||||||+||||++++++|+++|++|++++|+...... .. ..++.++.+|++|.+++.++++..++|+|
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~-~~~~~~~~~D~~~~~~~~~~~~~~~~d~v 71 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED--------AI-TEGAKFYNGDLRDKAFLRDVFTQENIEAV 71 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG--------GS-CTTSEEEECCTTCHHHHHHHHHHSCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh--------hc-CCCcEEEECCCCCHHHHHHHHhhcCCCEE
Confidence 3789999999999999999999999999999986543221 11 23789999999999999999985556999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||+||......+..++...+++|+.|+.+++++|++.+++ +||++||.++|+.....+++|+++. .+.+.|+.+|.++
T Consensus 72 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~~~~~~~~~E~~~~-~~~~~Y~~sK~~~ 149 (330)
T 2c20_A 72 MHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSSTAATYGEVDVDLITEETMT-NPTNTYGETKLAI 149 (330)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGGCSCSSSSBCTTSCC-CCSSHHHHHHHHH
T ss_pred EECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCCceeeCCCCCCCCCcCCCC-CCCChHHHHHHHH
Confidence 9999987654455678889999999999999999998865 9999999999997777788888765 6789999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCC---------CCChHHHHHHHHHc-CCCeEEEec---CCCCcceeecccHHH
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGR---------PDMAYFSFTRNILQ-GKPITVYRG---KNHVDLARDFTYIDD 316 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~v~D 316 (421)
|.+++.+++++|++++++||++||||+.. ....++.++..... +..+.++.. ..+++..++|+|++|
T Consensus 150 e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~D 229 (330)
T 2c20_A 150 EKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVED 229 (330)
T ss_dssp HHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHH
T ss_pred HHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHH
Confidence 99999999888999999999999999631 23345555554443 345666521 015778999999999
Q ss_pred HHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCC-
Q 043169 317 IVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT- 395 (421)
Q Consensus 317 va~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~- 395 (421)
+|++++.+++.+.....+++||+++++++|+.|+++.+.+.+|.+.+....+. ...+.....+|++|+++.|||+|++
T Consensus 230 va~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~ 308 (330)
T 2c20_A 230 LVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPR-RAGDPARLVASSQKAKEKLGWDPRYV 308 (330)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECC-CSSCCSEECBCCHHHHHHHCCCCSCC
T ss_pred HHHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC-CCCcccccccCHHHHHHHhCCCCccC
Confidence 99999999986521123689999999999999999999999998766554442 2334556779999999999999998
Q ss_pred CHHHHHHHHHHHHHHHhC
Q 043169 396 DLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 396 ~l~e~l~~~~~~~~~~~~ 413 (421)
+++|+|+++++||+++.+
T Consensus 309 ~l~~~l~~~~~~~~~~~~ 326 (330)
T 2c20_A 309 NVKTIIEHAWNWHQKQPN 326 (330)
T ss_dssp CHHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHHhhh
Confidence 999999999999998764
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=350.46 Aligned_cols=302 Identities=29% Similarity=0.431 Sum_probs=252.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++++++|+++|++|++++|........ ...++.++.+|++|.+++.+++++.++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~---------~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 71 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKREN---------VPKGVPFFRVDLRDKEGVERAFREFRPTHVS 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGG---------SCTTCCEECCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhh---------cccCeEEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 5799999999999999999999999999999854321110 1146788999999999999999865679999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc-cccCC-CCCCCCCCCCCCCCCCChHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS-SVYGL-NENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~-~v~g~-~~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
|+||......+..++...+++|+.|+.+++++|++.+.+ +||++||. ++||. ....+++|+++. .+.+.|+.||.+
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~~g~~~~~~~~~E~~~~-~~~~~Y~~sK~~ 149 (311)
T 2p5y_A 72 HQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGAIYGEVPEGERAEETWPP-RPKSPYAASKAA 149 (311)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHHHHCCCCTTCCBCTTSCC-CCCSHHHHHHHH
T ss_pred ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChhhcCCCCCCCCcCCCCCC-CCCChHHHHHHH
Confidence 999987655556778889999999999999999988864 99999998 89986 445577777654 577899999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCC---ChHHHHHHHHHcCCCeEEEe--cCCCCcceeecccHHHHHHHHHH
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD---MAYFSFTRNILQGKPITVYR--GKNHVDLARDFTYIDDIVKGCLG 323 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~v~Dva~a~~~ 323 (421)
+|.+++.+++++|++++++||++||||+.... ..++.++..+..+.++.++. .++++++.++|+|++|+|++++.
T Consensus 150 ~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~ 229 (311)
T 2p5y_A 150 FEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHAL 229 (311)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHH
Confidence 99999999988899999999999999976543 34567778888888877651 11356788999999999999999
Q ss_pred hhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHH
Q 043169 324 SLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKK 403 (421)
Q Consensus 324 ~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~ 403 (421)
+++.+ +++||+++++++|+.|+++.+.+.+|.+.+....+. +..+.....+|++|+++ |||+|+++++|+|++
T Consensus 230 ~~~~~-----~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~-lg~~p~~~~~~~l~~ 302 (311)
T 2p5y_A 230 ALFSL-----EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPP-RPGDLERSVLSPLKLMA-HGWRPKVGFQEGIRL 302 (311)
T ss_dssp HHHHC-----CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECC-CTTCCSBCCBCCHHHHT-TTCCCSSCHHHHHHH
T ss_pred HHhCC-----CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCC-CccchhhccCCHHHHHH-CCCCCCCCHHHHHHH
Confidence 99764 689999999999999999999999998766555543 24455667899999999 999999999999999
Q ss_pred HHHHHHH
Q 043169 404 FVRWYLS 410 (421)
Q Consensus 404 ~~~~~~~ 410 (421)
+++||++
T Consensus 303 ~~~~~~~ 309 (311)
T 2p5y_A 303 TVDHFRG 309 (311)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999975
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=347.56 Aligned_cols=319 Identities=26% Similarity=0.412 Sum_probs=252.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++++++|+++|++|++++|.............. ....++.++.+|++|.+++.+++++.++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER--LGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHH--HHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHh--hcCCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 5799999999999999999999999999998765433332222111 12356889999999999999999876779999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
||||.........++...+++|+.|+.++++++++.+.+ +||++||.++||.....+++|+.+..++.+.|+.||+++|
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 157 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHH
Confidence 999986544445567788999999999999999988864 9999999999987766777777655334789999999999
Q ss_pred HHHHHHHHHh-CCcEEEEEeccccCCCC------C----CCChHHHHHHHHH-cCCCeEEEec---CCCCcceeecccHH
Q 043169 251 EIAHTYNHIY-GLSITGLRFFTVYGPWG------R----PDMAYFSFTRNIL-QGKPITVYRG---KNHVDLARDFTYID 315 (421)
Q Consensus 251 ~~~~~~~~~~-gi~~~~vrp~~v~G~~~------~----~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~v~ 315 (421)
.+++.++.++ |++++++||+++|||.. . ....+..+..... .+..+.++.. .+++++.++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 237 (338)
T 1udb_A 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHH
T ss_pred HHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHH
Confidence 9999998876 89999999999999842 1 1234555555444 3455555531 12467899999999
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT 395 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~ 395 (421)
|+|++++.+++.......+++||+++++++|+.|+++.+.+.+|.+.+....+. ...+.....+|++|+++.|||+|++
T Consensus 238 Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~ 316 (338)
T 1udb_A 238 DLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-REGDLPAYWADASKADRELNWRVTR 316 (338)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECC-CTTCCSBCCBCCHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCC-CCCchhhhhcCHHHHHHHcCCCcCC
Confidence 999999999976421123489999999999999999999999998765544443 3344556678999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC
Q 043169 396 DLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 396 ~l~e~l~~~~~~~~~~~~ 413 (421)
+++|+|+++++||+++.+
T Consensus 317 ~l~~~l~~~~~w~~~~~~ 334 (338)
T 1udb_A 317 TLDEMAQDTWHWQSRHPQ 334 (338)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 999999999999988653
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-46 Score=360.36 Aligned_cols=314 Identities=25% Similarity=0.388 Sum_probs=252.5
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHH--CCCcEEEEeCCCCCCChhHHH----HHHHhhcCCceEEEEcccCCHHHHHH
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKK--RGDGVVGLDNFNNYYDPSLKK----ARKALLNNHGVFVIEGDINDAKLLAK 159 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~--~g~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~v~~~~~Dl~d~~~~~~ 159 (421)
+.+++|+||||||+||||++|+++|++ +|++|++++|+.+........ .........++.++.+|++|.+++.+
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHH
Confidence 346889999999999999999999999 999999999966521000000 00111234578999999999999999
Q ss_pred H-hhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 160 L-FDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 160 ~-~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
+ .. ++|+||||||... .+..+++..+++|+.|+.+++++|++.++ +||++||.++||.... +++|+++. .|
T Consensus 86 ~~~~--~~D~vih~A~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~--~~V~~SS~~vyg~~~~-~~~E~~~~-~p 157 (362)
T 3sxp_A 86 LEKL--HFDYLFHQAAVSD--TTMLNQELVMKTNYQAFLNLLEIARSKKA--KVIYASSAGVYGNTKA-PNVVGKNE-SP 157 (362)
T ss_dssp HTTS--CCSEEEECCCCCG--GGCCCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEEGGGGCSCCS-SBCTTSCC-CC
T ss_pred hhcc--CCCEEEECCccCC--ccccCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEeCcHHHhCCCCC-CCCCCCCC-CC
Confidence 8 44 5699999999653 25577889999999999999999999885 6999999999997766 88888765 77
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
.+.|+.||.++|.+++.++.+ ++++++||++||||+.... ..+..++..+..+.++.++ +++++.++|+|+
T Consensus 158 ~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v 232 (362)
T 3sxp_A 158 ENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLF---EFGEQLRDFVYI 232 (362)
T ss_dssp SSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECS---GGGCCEEECEEH
T ss_pred CChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEE---CCCCeEEccEEH
Confidence 899999999999999998765 8999999999999987543 5678888889998887765 467889999999
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPT 394 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~ 394 (421)
+|+|++++.+++.+ ..| +||+++++++++.|+++.+.+.+| +.++...+.+.........+|++|+++.|||+|+
T Consensus 233 ~Dva~ai~~~~~~~---~~g-~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 307 (362)
T 3sxp_A 233 EDVIQANVKAMKAQ---KSG-VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPL 307 (362)
T ss_dssp HHHHHHHHHHTTCS---SCE-EEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCCHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHhcC---CCC-EEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCHHHHHHHhCCCCC
Confidence 99999999999876 235 999999999999999999999999 6655544433234455678999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCC
Q 043169 395 TDLQTGLKKFVRWYLSYYGYNRG 417 (421)
Q Consensus 395 ~~l~e~l~~~~~~~~~~~~~~~~ 417 (421)
++++|+|+++++||+++++..+.
T Consensus 308 ~~l~e~l~~~~~~~~~~~~~~~~ 330 (362)
T 3sxp_A 308 YDLESGIKDYLPHIHAIFKGQRA 330 (362)
T ss_dssp CCHHHHHHHHHHHHTCC------
T ss_pred CCHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999988776544
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=352.77 Aligned_cols=315 Identities=22% Similarity=0.329 Sum_probs=253.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++++++|+++|++|++++|+........ ........++.++.+|++|.+++.+++++.++|+||
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 78 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDN---LHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCF 78 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHH---HHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhh---hhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEE
Confidence 68999999999999999999999999999998542221111 111112346899999999999999999985569999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCC----------------CCCCCC
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVP----------------FSEADR 234 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~----------------~~e~~~ 234 (421)
||||......+..++...+++|+.|+.+++++|++.+.+++||++||.++|+.....+ ++|+.+
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~ 158 (347)
T 1orr_A 79 HLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQ 158 (347)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSC
T ss_pred ECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCC
Confidence 9999876554556788899999999999999999988645999999999998654433 344433
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC---CChHHHHHHHHHcCC-----CeEEEecCCCCc
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP---DMAYFSFTRNILQGK-----PITVYRGKNHVD 306 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 306 (421)
. .+.+.|+.+|+++|.+++.+++++|++++++||++||||.... ...+..++..+..+. ++..+ ++++
T Consensus 159 ~-~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~ 234 (347)
T 1orr_A 159 L-DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS---GNGK 234 (347)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEE---SSSC
T ss_pred C-CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEe---cCCc
Confidence 3 5678999999999999999998889999999999999997543 234566666666665 56665 5788
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC--ccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHH
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS--PVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISS 384 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~--~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 384 (421)
+.++|+|++|+|++++.+++.. ....|++||++++. ++|+.|+++.+.+.+|.+.++...+ .+..+.....+|++|
T Consensus 235 ~~~~~i~v~Dva~a~~~~~~~~-~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~d~~k 312 (347)
T 1orr_A 235 QVRDVLHAEDMISLYFTALANV-SKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP-VRESDQRVFVADIKK 312 (347)
T ss_dssp CEEECEEHHHHHHHHHHHHHTH-HHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEEC-CCSSCCSEECBCCHH
T ss_pred ceEeeEEHHHHHHHHHHHHhcc-ccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCC-CCCCCcceeecCHHH
Confidence 9999999999999999999752 12357899999886 4999999999999999876655555 334455567789999
Q ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHHHhCC
Q 043169 385 AQKEFGYRPTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 385 a~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
+++.|||+|+++++|+|+++++|++++..-
T Consensus 313 ~~~~lG~~p~~~~~e~l~~~~~~~~~~~~~ 342 (347)
T 1orr_A 313 ITNAIDWSPKVSAKDGVQKMYDWTSSILEH 342 (347)
T ss_dssp HHHHHCCCCCSCHHHHHHHHHHHHHHC---
T ss_pred HHHHHCCCccCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987654
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=349.27 Aligned_cols=306 Identities=22% Similarity=0.338 Sum_probs=256.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKR--GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+|+||||||+||||++++++|+++ |++|++++|+........ .......++.++.+|++|.+++.++++++ |
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 77 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN----LEAILGDRVELVVGDIADAELVDKLAAKA--D 77 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGG----TGGGCSSSEEEEECCTTCHHHHHHHHTTC--S
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhH----HhhhccCCeEEEECCCCCHHHHHHHhhcC--C
Confidence 479999999999999999999999 899999999653222111 11122368999999999999999999987 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC------------CCCCCCCCC
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN------------VPFSEADRT 235 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~------------~~~~e~~~~ 235 (421)
+||||||......+..+++..+++|+.|+.+++++|.+.++ +||++||.++||.... .+++|+++.
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~ 155 (348)
T 1oc2_A 78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY 155 (348)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC
T ss_pred EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCcCCCCCC
Confidence 99999998765555678889999999999999999999875 9999999999986532 567776654
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
.+.+.|+.+|+++|.+++.+++++|++++++||++||||+......+..++..+..+.++.++ ++++..++|+|++
T Consensus 156 -~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~ 231 (348)
T 1oc2_A 156 -NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY---GEGKNVRDWIHTN 231 (348)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEE---TTSCCEEECEEHH
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEe---cCCCceEeeEEHH
Confidence 577899999999999999999888999999999999999876566677788888888887776 5678899999999
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccc-cceecCCCCCCCCcccCChHHHHHHcCCCcC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK-KNVIEMPGNGDVPFTHANISSAQKEFGYRPT 394 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~ 394 (421)
|+|++++.+++.+ ..+++||++++.++++.|+++.+.+.+|.+.. ....+ .+........+|++|+++.|||+|+
T Consensus 232 Dva~~~~~~~~~~---~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~~p~ 307 (348)
T 1oc2_A 232 DHSTGVWAILTKG---RMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVT-DRAGHDLRYAIDASKLRDELGWTPQ 307 (348)
T ss_dssp HHHHHHHHHHHHC---CTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEEC-CCTTCCCBCCBCCHHHHHHHCCCCS
T ss_pred HHHHHHHHHhhCC---CCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCC-CCCCcccccccCHHHHHHHcCCCCC
Confidence 9999999999765 35789999999999999999999999998653 22222 2233334456899999999999999
Q ss_pred CC-HHHHHHHHHHHHHHH
Q 043169 395 TD-LQTGLKKFVRWYLSY 411 (421)
Q Consensus 395 ~~-l~e~l~~~~~~~~~~ 411 (421)
++ ++|+|+++++||+++
T Consensus 308 ~~~~~~~l~~~~~~~~~~ 325 (348)
T 1oc2_A 308 FTDFSEGLEETIQWYTDN 325 (348)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 88 999999999999875
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=358.84 Aligned_cols=307 Identities=23% Similarity=0.331 Sum_probs=249.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+++|+||||||+||||++++++|+++| ++|++++|+.+....... ...++.++.+|++|.+++.++++++
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~-------~~~~v~~~~~Dl~d~~~l~~~~~~~-- 100 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP-------DHPAVRFSETSITDDALLASLQDEY-- 100 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC-------CCTTEEEECSCTTCHHHHHHCCSCC--
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc-------CCCceEEEECCCCCHHHHHHHhhCC--
Confidence 578999999999999999999999999 999999997643221110 1467999999999999999999855
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhc-CCCCeEEEEccccccCCCCCCCCC--CCCC--CC-CCCC
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA-NPQPSIVWASSSSVYGLNENVPFS--EADR--TD-QPAS 240 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~-~~~~riV~~SS~~v~g~~~~~~~~--e~~~--~~-~~~~ 240 (421)
|+|||+||......+..++...+++|+.++.+++++|++. +++ +||++||.++||.....+++ |++. +. .+.+
T Consensus 101 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~ 179 (377)
T 2q1s_A 101 DYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDS 179 (377)
T ss_dssp SEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC--------------CCCCCCCSSCCCS
T ss_pred CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHHHcCCCCCCCcCcccccccccccCCCC
Confidence 9999999987655556678889999999999999999988 754 99999999999976666677 7652 33 5678
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC---------CC----CChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWG---------RP----DMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
.|+.+|+++|.+++.+++++|++++++||++||||+. .. ...+..++..+..+.++.++ ++++.
T Consensus 180 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~g~~ 256 (377)
T 2q1s_A 180 PYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLE---NGGVA 256 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCS---GGGCC
T ss_pred chHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEe---CCCCe
Confidence 9999999999999999888899999999999999976 32 45677888888888877665 46788
Q ss_pred eeecccHHHHHHH-HHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCC-cccCChHHH
Q 043169 308 ARDFTYIDDIVKG-CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVP-FTHANISSA 385 (421)
Q Consensus 308 ~~~~i~v~Dva~a-~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~d~~ka 385 (421)
.++|+|++|+|++ ++.+++.+ . .| +||+++++++++.|+++.+.+.+|.+.++...|. +..+.. ...+|++|+
T Consensus 257 ~~~~i~v~Dva~a~i~~~~~~~--~-~g-~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~-~~~~~~~~~~~d~~k~ 331 (377)
T 2q1s_A 257 TRDFIFVEDVANGLIACAADGT--P-GG-VYNIASGKETSIADLATKINEITGNNTELDRLPK-RPWDNSGKRFGSPEKA 331 (377)
T ss_dssp EECCEEHHHHHHHHHHHHHHCC--T-TE-EEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCC-CGGGCC-CCCCCCHHH
T ss_pred EEeeEEHHHHHHHHHHHHHhcC--C-CC-eEEecCCCceeHHHHHHHHHHHhCCCCCceeCCC-CccccccccccCHHHH
Confidence 9999999999999 99999876 2 45 9999999999999999999999998765544442 223344 567899999
Q ss_pred HHHcCCCcCCCHHHHHHHHHHHHHHHh
Q 043169 386 QKEFGYRPTTDLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 386 ~~~lG~~p~~~l~e~l~~~~~~~~~~~ 412 (421)
++.|||+|+++++|+|+++++||+++.
T Consensus 332 ~~~lG~~p~~~l~e~l~~~~~~~~~~~ 358 (377)
T 2q1s_A 332 RRELGFSADVSIDDGLRKTIEWTKANL 358 (377)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHTH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999865
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=354.79 Aligned_cols=321 Identities=20% Similarity=0.326 Sum_probs=253.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHH-HCCCcEEEEeCCCCCC--------ChhHHHHHHHhhc---CCc---eEEEEcccCCH
Q 043169 90 GMSVLVTGAAGFVGTHVSLALK-KRGDGVVGLDNFNNYY--------DPSLKKARKALLN---NHG---VFVIEGDINDA 154 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~-~~g~~V~~~~r~~~~~--------~~~~~~~~~~~~~---~~~---v~~~~~Dl~d~ 154 (421)
+|+||||||+||||++++++|+ ++|++|++++|+.... ............. ..+ +.++.+|++|.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 5799999999999999999999 9999999999976432 1111110111111 124 89999999999
Q ss_pred HHHHHHhhccC-CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCC-------C
Q 043169 155 KLLAKLFDAVA-FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNE-------N 226 (421)
Q Consensus 155 ~~~~~~~~~~~-~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~-------~ 226 (421)
+++.++++... +|+||||||......+..++...+++|+.|+.+++++|++.+++ +||++||.++|+... .
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~SS~~v~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEECCHHHhCCCCcccccccc
Confidence 99999998654 79999999987654455677889999999999999999998865 999999999998665 5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC---------CCChHHHHH----HHHHcC
Q 043169 227 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR---------PDMAYFSFT----RNILQG 293 (421)
Q Consensus 227 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~---------~~~~~~~~~----~~~~~~ 293 (421)
.+++|+++. .+.+.|+.||+++|.+++.+++++|++++++||++||||+.. ....+..++ ..+..+
T Consensus 161 ~~~~E~~~~-~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 239 (397)
T 1gy8_A 161 EPIDINAKK-SPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPD 239 (397)
T ss_dssp CCBCTTSCC-BCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC
T ss_pred cCcCccCCC-CCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhc
Confidence 678887765 678899999999999999999888999999999999999642 234455444 244454
Q ss_pred C------------CeEEEec---CCCCcceeecccHHHHHHHHHHhhhcCCCCC---Cc---eEEEecCCCccCHHHHHH
Q 043169 294 K------------PITVYRG---KNHVDLARDFTYIDDIVKGCLGSLDTSAGPA---PY---RIFNLGNTSPVTVPKLVN 352 (421)
Q Consensus 294 ~------------~~~~~~~---~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~---~~---~~~~i~~~~~~t~~el~~ 352 (421)
. ++.++.. .+++++.++|+|++|+|++++.+++.+.... .+ ++||+++++++++.|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~ 319 (397)
T 1gy8_A 240 QRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIE 319 (397)
T ss_dssp -----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHH
T ss_pred CccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHHHHHH
Confidence 3 4555521 0157889999999999999999997641111 13 899999999999999999
Q ss_pred HHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCC-CHHHHHHHHHHHHHHHhC
Q 043169 353 ILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT-DLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 353 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~-~l~e~l~~~~~~~~~~~~ 413 (421)
.+.+.+|.+.+....+. ...+.....+|++|+++.|||+|++ +++|+|+++++||+++.+
T Consensus 320 ~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~ 380 (397)
T 1gy8_A 320 VARKTTGHPIPVRECGR-REGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPN 380 (397)
T ss_dssp HHHHHHCCCCCEEEECC-CTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTT
T ss_pred HHHHHhCCCCCeeeCCC-CCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhccc
Confidence 99999998766554442 2344556789999999999999999 999999999999988743
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=344.92 Aligned_cols=318 Identities=20% Similarity=0.239 Sum_probs=256.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|+||||||+||||++++++|+++|++|++++|+.+..... .. .......++.++.+|++|.+++.++++++++|+
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~--~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 78 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASW--RL-KELGIENDVKIIHMDLLEFSNIIRTIEKVQPDE 78 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTH--HH-HHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccc--cH-hhccccCceeEEECCCCCHHHHHHHHHhcCCCE
Confidence 578999999999999999999999999999999977654321 11 111123578999999999999999999878899
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
||||||......+..+++..+++|+.|+.+++++|++.+..++||++||.++||.....+++|+.+. .+.+.|+.||++
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~-~~~~~Y~~sK~~ 157 (345)
T 2z1m_A 79 VYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPF-YPRSPYAVAKLF 157 (345)
T ss_dssp EEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHH
T ss_pred EEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCC-CCCChhHHHHHH
Confidence 9999998765555677889999999999999999998775359999999999998777777777654 678899999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCh---HHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhh
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMA---YFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 325 (421)
+|.+++.++++++++++++|++++|||+...... +..++..+..+....... ++++..++|+|++|+|++++.++
T Consensus 158 ~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~Dva~a~~~~~ 235 (345)
T 2z1m_A 158 GHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVL--GNLNAKRDWGYAPEYVEAMWLMM 235 (345)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE--SCTTCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeee--CCCCceeeeEEHHHHHHHHHHHH
Confidence 9999999999889999999999999997654433 233445555665433222 46778999999999999999999
Q ss_pred hcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccce------------------e-cC-CCCCCCCcccCChHHH
Q 043169 326 DTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNV------------------I-EM-PGNGDVPFTHANISSA 385 (421)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~------------------~-~~-~~~~~~~~~~~d~~ka 385 (421)
+.+. +++||+++++++++.|+++.+.+.+|.+.++.. . +. .+........+|++|+
T Consensus 236 ~~~~----~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 311 (345)
T 2z1m_A 236 QQPE----PDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKA 311 (345)
T ss_dssp TSSS----CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCHHH
T ss_pred hCCC----CceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCcceeecCHHHH
Confidence 8662 378999999999999999999999998643220 1 10 1223334456799999
Q ss_pred HHHcCCCcCCCHHHHHHHHHHHHHHHhCCCC
Q 043169 386 QKEFGYRPTTDLQTGLKKFVRWYLSYYGYNR 416 (421)
Q Consensus 386 ~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~ 416 (421)
++.|||+|+++++|+|+++++||+++.+.++
T Consensus 312 ~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~~ 342 (345)
T 2z1m_A 312 MKKLGWKPRTTFDELVEIMMEADLKRVRDRE 342 (345)
T ss_dssp HHHHCCCCCSCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHcCCcccCCHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999887654
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=348.10 Aligned_cols=310 Identities=25% Similarity=0.412 Sum_probs=254.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
|+||||||+||||++++++|+++ |++|++++|+........ . .......++.++.+|++|.+++.++++..++|+|
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~--~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES--L-SDISESNRYNFEHADICDSAEITRIFEQYQPDAV 77 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGG--G-TTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhh--h-hhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEE
Confidence 57999999999999999999998 799999999653211110 0 0111235789999999999999999985566999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhc--CCC------CeEEEEccccccCCCCC--C--------CCCC
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA--NPQ------PSIVWASSSSVYGLNEN--V--------PFSE 231 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~--~~~------~riV~~SS~~v~g~~~~--~--------~~~e 231 (421)
|||||......+..+++..+++|+.|+.+++++|.+. +++ ++||++||.++||.... . +++|
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E 157 (361)
T 1kew_A 78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred EECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCC
Confidence 9999987655566788899999999999999999987 653 39999999999986532 1 6677
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+++. .+.+.|+.||.++|.+++.+++++|++++++||++||||.......+..++..+..+.++.++ ++++..++|
T Consensus 158 ~~~~-~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 233 (361)
T 1kew_A 158 TTAY-APSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDW 233 (361)
T ss_dssp TSCC-CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEE---TTSCCEEEE
T ss_pred CCCC-CCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEc---CCCceeEee
Confidence 6654 678899999999999999999888999999999999999876556677788888888888776 577889999
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCcccc--------ceecCCCCCCCCcccCChH
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKK--------NVIEMPGNGDVPFTHANIS 383 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~--------~~~~~~~~~~~~~~~~d~~ 383 (421)
+|++|+|++++.+++.+ ..|++||++++.++++.|+++.+.+.+|.+.+. ...+ .+........+|++
T Consensus 234 i~v~Dva~a~~~~~~~~---~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~-~~~~~~~~~~~d~~ 309 (361)
T 1kew_A 234 LYVEDHARALHMVVTEG---KAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVA-DRPGHDRRYAIDAG 309 (361)
T ss_dssp EEHHHHHHHHHHHHHHC---CTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEEC-CCTTCCCBCCBCCH
T ss_pred EEHHHHHHHHHHHHhCC---CCCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecC-CCCcccceeecCHH
Confidence 99999999999999865 357899999999999999999999999865421 1111 12223344578999
Q ss_pred HHHHHcCCCcCCCHHHHHHHHHHHHHHH
Q 043169 384 SAQKEFGYRPTTDLQTGLKKFVRWYLSY 411 (421)
Q Consensus 384 ka~~~lG~~p~~~l~e~l~~~~~~~~~~ 411 (421)
|+++.|||+|+++++|+|+++++||+++
T Consensus 310 k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 310 KISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp HHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999875
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-45 Score=347.44 Aligned_cols=300 Identities=20% Similarity=0.337 Sum_probs=246.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.+|+||||||+||||++|+++|+++|++|++++|+. .+|++|.+++.++++..++|+
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-----------------------~~D~~d~~~~~~~~~~~~~d~ 58 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQ 58 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-----------------------cCCccCHHHHHHHHHhcCCCE
Confidence 458999999999999999999999999999988731 279999999999998556699
Q ss_pred EEEcccccCc-hhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCC---CCCCC-ChHH
Q 043169 169 VMHLAAQAGV-RYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADR---TDQPA-SLYA 243 (421)
Q Consensus 169 vi~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~---~~~~~-~~Y~ 243 (421)
|||+||.... .....++...+++|+.++.+++++|++.+++ +||++||.++||.....+++|+++ +..|. +.|+
T Consensus 59 vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~ 137 (321)
T 1e6u_A 59 VYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYA 137 (321)
T ss_dssp EEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHH
T ss_pred EEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccH
Confidence 9999998652 2345677889999999999999999998865 999999999999777777888763 22343 5899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CChHHHHHHHHHc----C-CCeEEEecCCCCcceeecccH
Q 043169 244 ATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP----DMAYFSFTRNILQ----G-KPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~i~v 314 (421)
.+|.++|.+++.+++++|++++++||++||||+... ...+..++..+.. | .++.++ ++++..++|+|+
T Consensus 138 ~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~g~~~~~~i~v 214 (321)
T 1e6u_A 138 IAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVW---GSGTPMREFLHV 214 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEE---SCSCCEECEEEH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEc---CCCCEEEEeEEH
Confidence 999999999999998889999999999999997653 2466677776654 3 566655 567899999999
Q ss_pred HHHHHHHHHhhhcCCC------CCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHH
Q 043169 315 DDIVKGCLGSLDTSAG------PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKE 388 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~------~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~ 388 (421)
+|+|++++.+++++.. ...+++||+++++++|+.|+++.+.+.+|.+.++...+. ++.......+|++|+++
T Consensus 215 ~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~- 292 (321)
T 1e6u_A 215 DDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS-KPDGTPRKLLDVTRLHQ- 292 (321)
T ss_dssp HHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-SCCCCSBCCBCCHHHHH-
T ss_pred HHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCC-CCCCcccccCCHHHHHh-
Confidence 9999999999987521 013689999999999999999999999998766554443 23345566799999999
Q ss_pred cCCCcCCCHHHHHHHHHHHHHHHhCCCCC
Q 043169 389 FGYRPTTDLQTGLKKFVRWYLSYYGYNRG 417 (421)
Q Consensus 389 lG~~p~~~l~e~l~~~~~~~~~~~~~~~~ 417 (421)
|||+|+++++|+|+++++||+++.+..||
T Consensus 293 lG~~p~~~~~~~l~~~~~~~~~~~~~~~~ 321 (321)
T 1e6u_A 293 LGWYHEISLEAGLASTYQWFLENQDRFRG 321 (321)
T ss_dssp TTCCCCCCHHHHHHHHHHHHHHTC-----
T ss_pred cCCccCCcHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999998876654
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=353.56 Aligned_cols=319 Identities=22% Similarity=0.288 Sum_probs=250.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh-------------hHHHHH-HHhhcCCceEEEEcccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDP-------------SLKKAR-KALLNNHGVFVIEGDIND 153 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------------~~~~~~-~~~~~~~~v~~~~~Dl~d 153 (421)
-++++||||||+||||++|+++|+++|++|++++|....... ...... .......++.++.+|++|
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 368899999999999999999999999999999984321000 000000 001124678999999999
Q ss_pred HHHHHHHhhccCCcEEEEcccccCchhhccCCc---hhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCC
Q 043169 154 AKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPH---SYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 154 ~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~---~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
.+++.+++++.++|+||||||.........++. ..+++|+.|+.+++++|++.+..++||++||.++||... .+++
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~~ 167 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIE 167 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBC
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCCC
Confidence 999999999866799999999876544444443 478999999999999999888634999999999998654 4565
Q ss_pred CCC-------------CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC-----------------C
Q 043169 231 EAD-------------RTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP-----------------D 280 (421)
Q Consensus 231 e~~-------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~-----------------~ 280 (421)
|+. .+..+.+.|+.||+++|.+++.+++++|++++++||++||||+... .
T Consensus 168 E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~ 247 (404)
T 1i24_A 168 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247 (404)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTC
T ss_pred ccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchh
Confidence 541 1335678999999999999999988889999999999999997642 3
Q ss_pred ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCc--eEEEecCCCccCHHHHHHHHHHH-
Q 043169 281 MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPY--RIFNLGNTSPVTVPKLVNILERH- 357 (421)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~--~~~~i~~~~~~t~~el~~~l~~~- 357 (421)
..+..++..+..++++.++ +++++.++|+|++|+|++++.+++.+ ...+ ++||+++ +++|+.|+++.+.+.
T Consensus 248 ~~~~~~~~~~~~g~~~~~~---g~g~~~~~~i~v~Dva~a~~~~l~~~--~~~g~~~~yni~~-~~~s~~e~~~~i~~~~ 321 (404)
T 1i24_A 248 TALNRFCVQAAVGHPLTVY---GKGGQTRGYLDIRDTVQCVEIAIANP--AKAGEFRVFNQFT-EQFSVNELASLVTKAG 321 (404)
T ss_dssp CHHHHHHHHHHHTCCEEEE---TTSCCEEEEEEHHHHHHHHHHHHHSC--CCTTCEEEEEECS-EEEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCeeEEe---CCCCceECcEEHHHHHHHHHHHHhCc--ccCCCceEEEECC-CCCcHHHHHHHHHHHH
Confidence 4677888889999988776 57788999999999999999999876 2334 7999998 889999999999998
Q ss_pred --hCCccccceecCCCCC-CCCcccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhCC
Q 043169 358 --LKVKAKKNVIEMPGNG-DVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 358 --~g~~~~~~~~~~~~~~-~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
+|.+.+....|.+... ......+|++|++ +|||+|+++++++++++++|++.+.+.
T Consensus 322 ~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~~~~~~~~~~~~ 380 (404)
T 1i24_A 322 SKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKDR 380 (404)
T ss_dssp HTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGGG
T ss_pred HhhCCCccccccCcccCccccceEecCHHHHH-HcCCCcCcCHHHHHHHHHHHHHhhhhc
Confidence 7776554444433221 2334567999997 799999999999999999999876643
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=347.21 Aligned_cols=309 Identities=22% Similarity=0.353 Sum_probs=251.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-HHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-AKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~d~ 168 (421)
|+||||||+||||++++++|+++ |++|++++|+.+..+. .....++.++.+|++| .+.+.++++++ |+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~~~~--d~ 70 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR--------FLNHPHFHFVEGDISIHSEWIEYHVKKC--DV 70 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGG--------GTTCTTEEEEECCTTTCSHHHHHHHHHC--SE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHH--------hhcCCCeEEEeccccCcHHHHHhhccCC--CE
Confidence 58999999999999999999998 8999999996542211 1123579999999998 46788888876 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCC------CCCCChH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRT------DQPASLY 242 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~------~~~~~~Y 242 (421)
|||+||...+.....++...+++|+.++.+++++|++.+ + +||++||.++||.....+++|+++. ..+.+.|
T Consensus 71 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y 148 (345)
T 2bll_A 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (345)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred EEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEEecHHHcCCCCCCCcCCcccccccCcccCccccc
Confidence 999999876544456778899999999999999999887 4 9999999999987766677777642 1244589
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
+.+|.++|.+++.+++++|++++++||++||||+... ...+..++..+..+.++.++ +++++.++|+|+
T Consensus 149 ~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v 225 (345)
T 2bll_A 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDI 225 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEG---GGSCCEEECEEH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEE---CCCCEEEEEEEH
Confidence 9999999999999998889999999999999997642 23566788888888887776 467789999999
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCC-ccCHHHHHHHHHHHhCCccccceecCCC--------------CCCCCccc
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTS-PVTVPKLVNILERHLKVKAKKNVIEMPG--------------NGDVPFTH 379 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~-~~t~~el~~~l~~~~g~~~~~~~~~~~~--------------~~~~~~~~ 379 (421)
+|+|++++.+++.+.....+++||+++++ ++|+.|+++.+.+.+|.+......+... ..+.....
T Consensus 226 ~Dva~a~~~~~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (345)
T 2bll_A 226 RDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRK 305 (345)
T ss_dssp HHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCC
T ss_pred HHHHHHHHHHHhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccchhhhc
Confidence 99999999999875222467999999986 8999999999999998764332222110 01234456
Q ss_pred CChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhCC
Q 043169 380 ANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 380 ~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
+|++|++++|||+|+++++|+|+++++||+++.+.
T Consensus 306 ~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~ 340 (345)
T 2bll_A 306 PSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (345)
T ss_dssp BCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred ccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999987653
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-44 Score=347.41 Aligned_cols=305 Identities=23% Similarity=0.335 Sum_probs=254.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.++|+||||||+||||++++++|+++|++|++++|+.+..... ...++.++.+|++|.+++.++++++ |
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~v~~~~~Dl~d~~~~~~~~~~~--d 95 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE---------DMFCDEFHLVDLRVMENCLKVTEGV--D 95 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG---------GGTCSEEEECCTTSHHHHHHHHTTC--S
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh---------ccCCceEEECCCCCHHHHHHHhCCC--C
Confidence 3678999999999999999999999999999999976543221 1247899999999999999999865 9
Q ss_pred EEEEcccccCch-hhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC-----CCCCCCCC-CCCCCC
Q 043169 168 HVMHLAAQAGVR-YAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN-----VPFSEADR-TDQPAS 240 (421)
Q Consensus 168 ~vi~~Ag~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~-----~~~~e~~~-~~~~~~ 240 (421)
+|||+||..... ....++...+++|+.|+.+++++|++.+++ +||++||.++|+.... .+++|++. +..+.+
T Consensus 96 ~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~ 174 (379)
T 2c5a_A 96 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 174 (379)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred EEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCC
Confidence 999999986542 225677889999999999999999998865 9999999999985332 34556542 235678
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCC-eEEEecCCCCcceeecccHH
Q 043169 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKP-ITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~ 315 (421)
.|+.+|+++|.+++.+++++|++++++||++||||+.... ..+..++..+..+.+ +.++ +++++.++|+|++
T Consensus 175 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~ 251 (379)
T 2c5a_A 175 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW---GDGLQTRSFTFID 251 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEE---SCSCCEECCEEHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEe---CCCCeeEEEEEHH
Confidence 9999999999999999888899999999999999976532 256778888877776 6665 5778899999999
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT 395 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~ 395 (421)
|+|++++.+++.+ .+++||+++++++++.|+++.+.+.+|.+.+....|.+ .......+|++|+++.|||+|++
T Consensus 252 Dva~ai~~~l~~~----~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~--~~~~~~~~d~~k~~~~lG~~p~~ 325 (379)
T 2c5a_A 252 ECVEGVLRLTKSD----FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP--EGVRGRNSDNNLIKEKLGWAPNM 325 (379)
T ss_dssp HHHHHHHHHHHSS----CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC--CCCSBCEECCHHHHHHHSCCCCC
T ss_pred HHHHHHHHHhhcc----CCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCC--CCcccccCCHHHHHHHhCCCCCC
Confidence 9999999999865 35799999999999999999999999987665555543 23444568999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC
Q 043169 396 DLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 396 ~l~e~l~~~~~~~~~~~~ 413 (421)
+++|+|+++++||+++..
T Consensus 326 ~l~e~l~~~~~~~~~~~~ 343 (379)
T 2c5a_A 326 RLKEGLRITYFWIKEQIE 343 (379)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHh
Confidence 999999999999998764
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=347.05 Aligned_cols=320 Identities=21% Similarity=0.242 Sum_probs=251.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCC-hhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYD-PSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+|+||||||+||||++++++|+++|++|++++|+.+... .......... ....++.++.+|++|.+++.++++++++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 478999999999999999999999999999999654321 1111100000 01357899999999999999999987889
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCC--CeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ--PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+||||||.........++...+++|+.|+.+++++|++.++. ++||++||.++||.....+++|+++. .+.+.|+.|
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~-~~~~~Y~~s 159 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVA 159 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCC-CCCSHHHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCC-CCCChHHHH
Confidence 999999986654455667788999999999999999998762 59999999999997766678887665 678899999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC---hHHHHHHHHHcCCC-eEEEecCCCCcceeecccHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDM---AYFSFTRNILQGKP-ITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
|+++|.+++.+++++|++++++||+++|||+..... .+..++..+..+.. ...+ +++++.++|+|++|+|+++
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~~~~~i~v~Dva~a~ 236 (372)
T 1db3_A 160 KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL---GNMDSLRDWGHAKDYVKMQ 236 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEE---SCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceee---cCCCceeeeeEHHHHHHHH
Confidence 999999999999889999999999999999765443 23455666667764 3333 5678899999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccce-----------------------------ecC-CC
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNV-----------------------------IEM-PG 371 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~-----------------------------~~~-~~ 371 (421)
+.+++.+. +++||+++++++|+.|+++.+.+.+|.+.++.. .+. .+
T Consensus 237 ~~~~~~~~----~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
T 1db3_A 237 WMMLQQEQ----PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFR 312 (372)
T ss_dssp HHTTSSSS----CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCC
T ss_pred HHHHhcCC----CceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccceeeccccccC
Confidence 99998652 478999999999999999999999997643211 010 12
Q ss_pred CCCCCcccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhCCCCC
Q 043169 372 NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRG 417 (421)
Q Consensus 372 ~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~~ 417 (421)
..+.....+|++|++++|||+|+++++|+|+++++||+++.+.+++
T Consensus 313 ~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~~ 358 (372)
T 1db3_A 313 PAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSL 358 (372)
T ss_dssp CCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhccch
Confidence 2334455689999999999999999999999999999999876554
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=343.57 Aligned_cols=301 Identities=26% Similarity=0.383 Sum_probs=254.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+.+|+||||||+||||++|+++|+++|++|++++|+.+........ ........++.++.+|++ ++|
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~------------~~d 71 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEG-TGKFLEKPVLELEERDLS------------DVR 71 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTT-SSEEECSCGGGCCHHHHT------------TEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhh-hhhhccCCCeeEEeCccc------------cCC
Confidence 4578999999999999999999999999999999976521110000 001112346677777776 459
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
+|||+||.........++...++ |+.++.+++++|++.+++ +||++||.++|+.....+++|+++. .|.+.|+.+|+
T Consensus 72 ~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~SS~~v~~~~~~~~~~E~~~~-~p~~~Y~~sK~ 148 (321)
T 3vps_A 72 LVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVP-KVVVGSTCEVYGQADTLPTPEDSPL-SPRSPYAASKV 148 (321)
T ss_dssp EEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCC-eEEEecCHHHhCCCCCCCCCCCCCC-CCCChhHHHHH
Confidence 99999998876666777888888 999999999999999965 9999999999998888888888765 67899999999
Q ss_pred HHHHHHHHHHHHhCC-cEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 248 AGEEIAHTYNHIYGL-SITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi-~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
++|.+++.+++++|+ +++++||+++|||+......+..++..+..++++.++ ++++..++|+|++|+|++++.+++
T Consensus 149 ~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~Dva~~~~~~~~ 225 (321)
T 3vps_A 149 GLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVE---GDGEQRRDFTYITDVVDKLVALAN 225 (321)
T ss_dssp HHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEE---TTSCCEECEEEHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEe---CCCCceEceEEHHHHHHHHHHHHh
Confidence 999999999998899 9999999999999888777888999999999988877 578899999999999999999999
Q ss_pred cCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCc-CCCHHHHHHHHH
Q 043169 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRP-TTDLQTGLKKFV 405 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p-~~~l~e~l~~~~ 405 (421)
.+. . | +||+++++++|+.|+++.+. .+|.+.++...+.. ........+|++|+++.|||+| +++++|+|++++
T Consensus 226 ~~~--~-g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~ 299 (321)
T 3vps_A 226 RPL--P-S-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPR-PNEITEFRADTALQTRQIGERSGGIGIEEGIRLTL 299 (321)
T ss_dssp SCC--C-S-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCC-TTCCSBCCBCCHHHHHHHCCCSCCCCHHHHHHHHH
T ss_pred cCC--C-C-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCC-CCCcceeeccHHHHHHHhCCCCCcCCHHHHHHHHH
Confidence 872 2 5 99999999999999999999 99988776655533 4456677899999999999999 889999999999
Q ss_pred HHHHHHhC
Q 043169 406 RWYLSYYG 413 (421)
Q Consensus 406 ~~~~~~~~ 413 (421)
+||+++..
T Consensus 300 ~~~~~~~~ 307 (321)
T 3vps_A 300 EWWQSRDL 307 (321)
T ss_dssp HHHHTSCT
T ss_pred HHHHhCCC
Confidence 99987653
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=338.95 Aligned_cols=307 Identities=25% Similarity=0.405 Sum_probs=249.8
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
+.+++|+||||||+||||++|+++|+++|++|++++|+......... ......++.++.+|+.|.. +. +
T Consensus 23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~D~~~~~-----~~--~ 91 (343)
T 2b69_A 23 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVE----HWIGHENFELINHDVVEPL-----YI--E 91 (343)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTG----GGTTCTTEEEEECCTTSCC-----CC--C
T ss_pred cccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhh----hhccCCceEEEeCccCChh-----hc--C
Confidence 34678999999999999999999999999999999996543222111 1112357899999998752 33 4
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCC----CCCCCCCh
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEAD----RTDQPASL 241 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~----~~~~~~~~ 241 (421)
+|+|||+||.........++...+++|+.|+.+++++|++.+. +||++||.++||.....+++|+. .+..+.+.
T Consensus 92 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~ 169 (343)
T 2b69_A 92 VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRAC 169 (343)
T ss_dssp CSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHH
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCc
Confidence 5999999998765445567788899999999999999999884 99999999999877666777764 23356678
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--CChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHH
Q 043169 242 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP--DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK 319 (421)
Q Consensus 242 Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 319 (421)
|+.+|+++|.+++.+++++|++++++||++||||+... ...+..++..+.+++++.++ ++++..++|+|++|+|+
T Consensus 170 Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~Dva~ 246 (343)
T 2b69_A 170 YDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVN 246 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEE---SSSCCEEECEEHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEc---CCCCeEEeeEeHHHHHH
Confidence 99999999999999988889999999999999997643 34667788888888888776 57788999999999999
Q ss_pred HHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHH
Q 043169 320 GCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQT 399 (421)
Q Consensus 320 a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e 399 (421)
+++.+++.+ .+++||+++++++|+.|+++.+.+.+|.+.++...+.. ..+......|++|+++.|||+|+++++|
T Consensus 247 a~~~~~~~~----~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~-~~~~~~~~~d~~k~~~~lG~~p~~~l~e 321 (343)
T 2b69_A 247 GLVALMNSN----VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA-QDDPQKRKPDIKKAKLMLGWEPVVPLEE 321 (343)
T ss_dssp HHHHHHTSS----CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC-TTCCCCCCBCCHHHHHHHCCCCCSCHHH
T ss_pred HHHHHHhcC----CCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCC-CCCCceecCCHHHHHHHcCCCCCCCHHH
Confidence 999998765 25789999999999999999999999987665555432 2334456789999999999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 043169 400 GLKKFVRWYLSYYG 413 (421)
Q Consensus 400 ~l~~~~~~~~~~~~ 413 (421)
+|+++++||+++.+
T Consensus 322 ~l~~~~~~~~~~~~ 335 (343)
T 2b69_A 322 GLNKAIHYFRKELE 335 (343)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=344.08 Aligned_cols=316 Identities=19% Similarity=0.224 Sum_probs=253.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChh-HHHHHHHh--hcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPS-LKKARKAL--LNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+||||||+||||++++++|+++|++|++++|+.+..... ........ ....++.++.+|++|.+++.++++++++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 6899999999999999999999999999999976542111 10000000 02357899999999999999999987889
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCC--CeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ--PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+||||||......+..++...+++|+.|+.+++++|++.++. ++||++||.++|+.....+++|+++. .+.+.|+.+
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~-~~~~~Y~~s 183 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF-YPRSPYGAA 183 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC-CCCSHHHHH
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCC-CCCChhHHH
Confidence 999999987655456678889999999999999999998762 49999999999997776788887765 577899999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCh---HHHHHHHHHcCCCe-EEEecCCCCcceeecccHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMA---YFSFTRNILQGKPI-TVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
|+++|.+++.++++++++++++||+++|||+...... +..++..+..+... ..+ ++++..++|+|++|+|+++
T Consensus 184 K~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~~~~~i~v~Dva~a~ 260 (375)
T 1t2a_A 184 KLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL---GNLDAKRDWGHAKDYVEAM 260 (375)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEE---SCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEe---CCCCceeeeEEHHHHHHHH
Confidence 9999999999998889999999999999997654432 33455556666543 333 5678899999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccce------------------e-cC-CCCCCCCcccCC
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNV------------------I-EM-PGNGDVPFTHAN 381 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~------------------~-~~-~~~~~~~~~~~d 381 (421)
+.+++.+. +++||+++++++|+.|+++.+.+.+|.+.++.. . +. .+..+.....+|
T Consensus 261 ~~~~~~~~----~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 336 (375)
T 1t2a_A 261 WLMLQNDE----PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGD 336 (375)
T ss_dssp HHHHHSSS----CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBC
T ss_pred HHHHhcCC----CceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCcccchhhcCC
Confidence 99998762 378999999999999999999999998643210 1 10 123334456689
Q ss_pred hHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhCC
Q 043169 382 ISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 382 ~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
++|++++|||+|+++++|+|+++++||++..+.
T Consensus 337 ~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 369 (375)
T 1t2a_A 337 CTKAKQKLNWKPRVAFDELVREMVHADVELMRT 369 (375)
T ss_dssp CHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCccCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999998754
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=337.83 Aligned_cols=300 Identities=22% Similarity=0.352 Sum_probs=240.3
Q ss_pred hhhcccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH
Q 043169 81 SSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL 160 (421)
Q Consensus 81 ~~~~~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~ 160 (421)
.+.+++.+++|+||||||+||||++|+++|+++|++|++++|+.+....... .-.++.++.+|++|.+++.++
T Consensus 11 ~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------~l~~v~~~~~Dl~d~~~~~~~ 83 (330)
T 2pzm_A 11 SSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP-------PVAGLSVIEGSVTDAGLLERA 83 (330)
T ss_dssp ---CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSC-------SCTTEEEEECCTTCHHHHHHH
T ss_pred ccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhh-------ccCCceEEEeeCCCHHHHHHH
Confidence 3456667899999999999999999999999999999999996543221100 014789999999999999999
Q ss_pred hhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCC--CCCCCCCCCCC
Q 043169 161 FDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENV--PFSEADRTDQP 238 (421)
Q Consensus 161 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~--~~~e~~~~~~~ 238 (421)
++..++|+||||||..... +..++. +++|+.|+.+++++|.+.+.+ +||++||.++|+..... +++|++ .+
T Consensus 84 ~~~~~~D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~-~iV~~SS~~~~~~~~~~~~~~~E~~---~~ 156 (330)
T 2pzm_A 84 FDSFKPTHVVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVK-RLLNFQTALCYGRPATVPIPIDSPT---AP 156 (330)
T ss_dssp HHHHCCSEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCS-EEEEEEEGGGGCSCSSSSBCTTCCC---CC
T ss_pred HhhcCCCEEEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCccCCCCcCCCC---CC
Confidence 9855569999999986532 222333 899999999999999988864 99999999999865443 677765 46
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV 318 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 318 (421)
.+.|+.+|+++|.+++.+ +++++++||+++|||+. ....+..++..+..+. ..+ +++. .++|+|++|+|
T Consensus 157 ~~~Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~-~~~~~~~~~~~~~~~~--~~~---~~~~-~~~~i~~~Dva 225 (330)
T 2pzm_A 157 FTSYGISKTAGEAFLMMS----DVPVVSLRLANVTGPRL-AIGPIPTFYKRLKAGQ--KCF---CSDT-VRDFLDMSDFL 225 (330)
T ss_dssp CSHHHHHHHHHHHHHHTC----SSCEEEEEECEEECTTC-CSSHHHHHHHHHHTTC--CCC---EESC-EECEEEHHHHH
T ss_pred CChHHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCC-CCCHHHHHHHHHHcCC--EEe---CCCC-EecceeHHHHH
Confidence 789999999999999886 89999999999999986 3455667777777765 222 2445 88999999999
Q ss_pred H-HHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHH-----HHHcCCC
Q 043169 319 K-GCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSA-----QKEFGYR 392 (421)
Q Consensus 319 ~-a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka-----~~~lG~~ 392 (421)
+ +++.+++.+ . +++||+++++++++.|+++.+.+.+|.+ ++...+... +.....+|++|+ ++ |||+
T Consensus 226 ~~a~~~~~~~~--~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~--~~~~~~~d~~k~~~~~l~~-lG~~ 297 (330)
T 2pzm_A 226 AIADLSLQEGR--P--TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA--PGADDVPSVVLDPSKTETE-FGWK 297 (330)
T ss_dssp HHHHHHTSTTC--C--CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC--CCTTSCSEECBCCHHHHHH-HCCC
T ss_pred HHHHHHHhhcC--C--CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc--chhhccCCHHHHhhchHHH-cCCc
Confidence 9 999999875 2 8999999999999999999999999987 443333221 344566788888 77 9999
Q ss_pred cCCCHHHHHHHHHHHHHHHhC
Q 043169 393 PTTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 393 p~~~l~e~l~~~~~~~~~~~~ 413 (421)
|+++++|+|+++++||+++.-
T Consensus 298 p~~~~~~~l~~~~~~~~~~~~ 318 (330)
T 2pzm_A 298 AKVDFKDTITGQLAWYDKYGV 318 (330)
T ss_dssp CCCCHHHHHHHHHHHHHHHCS
T ss_pred ccCCHHHHHHHHHHHHHhhCc
Confidence 999999999999999998753
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-43 Score=328.40 Aligned_cols=278 Identities=18% Similarity=0.207 Sum_probs=240.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++++++|+++|++|++++|. ++|++|.+++.+++++.++|+||
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~D~~d~~~~~~~~~~~~~d~vi 61 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK------------------------LLDITNISQVQQVVQEIRPHIII 61 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT------------------------TSCTTCHHHHHHHHHHHCCSEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc------------------------ccCCCCHHHHHHHHHhcCCCEEE
Confidence 489999999999999999999999999999981 37999999999999976779999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+||......+..++...+++|+.|+.+++++|++.+. +||++||.++|+.....+++|++++ .|.+.|+.+|.++|
T Consensus 62 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~SS~~vy~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 138 (287)
T 3sc6_A 62 HCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYISTDYVFQGDRPEGYDEFHNP-APINIYGASKYAGE 138 (287)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCCCCSSCBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEchhhhcCCCCCCCCCCCCCC-CCCCHHHHHHHHHH
Confidence 99999876666678899999999999999999999986 8999999999998888889988876 67899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCC
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
.+++.+. .+++++||++||||+.. ..+..++..+..+.++.++ +++.++|+|++|+|++++.+++++.
T Consensus 139 ~~~~~~~----~~~~ilR~~~v~G~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~~~- 206 (287)
T 3sc6_A 139 QFVKELH----NKYFIVRTSWLYGKYGN--NFVKTMIRLGKEREEISVV-----ADQIGSPTYVADLNVMINKLIHTSL- 206 (287)
T ss_dssp HHHHHHC----SSEEEEEECSEECSSSC--CHHHHHHHHHTTCSEEEEE-----CSCEECCEEHHHHHHHHHHHHTSCC-
T ss_pred HHHHHhC----CCcEEEeeeeecCCCCC--cHHHHHHHHHHcCCCeEee-----cCcccCceEHHHHHHHHHHHHhCCC-
Confidence 9998864 47899999999999653 4667788888888887775 2478999999999999999998772
Q ss_pred CCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecC----CCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHHHHH
Q 043169 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM----PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVR 406 (421)
Q Consensus 331 ~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~ 406 (421)
+++||+++++++|+.|+++.+.+.+|.+..+...+. ..........+|++|++ .|||.|.++++|+|+++++
T Consensus 207 ---~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~~~~~l~~~~~ 282 (287)
T 3sc6_A 207 ---YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LNGFLQMPSWEEGLERFFI 282 (287)
T ss_dssp ---CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HTTCCCCCBHHHHHHHHHH
T ss_pred ---CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hhCCCCCccHHHHHHHHHH
Confidence 689999999999999999999999998766544432 22334456679999998 8999999999999999999
Q ss_pred HHHHH
Q 043169 407 WYLSY 411 (421)
Q Consensus 407 ~~~~~ 411 (421)
|++++
T Consensus 283 ~~~~~ 287 (287)
T 3sc6_A 283 ETKSH 287 (287)
T ss_dssp HTC--
T ss_pred HHhcC
Confidence 98653
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=336.47 Aligned_cols=315 Identities=22% Similarity=0.241 Sum_probs=250.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChh-HHHHHHH-hhcCC-ceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPS-LKKARKA-LLNNH-GVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~-~~~~~-~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+||||||+||||++|+++|+++|++|++++|+.+..... ....... ..... ++.++.+|++|.+++.++++++++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 6899999999999999999999999999999976542110 0000000 00112 7899999999999999999987889
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCC----CeEEEEccccccCCCCCCCCCCCCCCCCCCChHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ----PSIVWASSSSVYGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
+||||||......+..++...+++|+.|+.+++++|++.+++ .+||++||.++||.... +++|+++. .+.+.|+
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~~~~-~~~~~Y~ 186 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETTPF-HPRSPYA 186 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTTSCC-CCCSHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCCCCC-CCCCchH
Confidence 999999987655556778889999999999999999876532 39999999999997666 78887655 6788999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCh---HHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHH
Q 043169 244 ATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMA---YFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 320 (421)
.+|+++|.+++.++.++|++++++|++++|||+...... +..++..+..+....+.. ++++..++|+|++|+|++
T Consensus 187 ~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~~~~~~~~v~v~Dva~a 264 (381)
T 1n7h_A 187 ASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL--GNLQASRDWGFAGDYVEA 264 (381)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEE--SCTTCEEECEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEe--CCCCceeeeEEHHHHHHH
Confidence 999999999999998889999999999999997654432 334555566665433222 567889999999999999
Q ss_pred HHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCcccc--ceecC-CCCCCCCcccCChHHHHHHcCCCcCCCH
Q 043169 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKK--NVIEM-PGNGDVPFTHANISSAQKEFGYRPTTDL 397 (421)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~--~~~~~-~~~~~~~~~~~d~~ka~~~lG~~p~~~l 397 (421)
++.+++.+. +++||+++++++++.|+++.+.+.+|.+... ...+. .++.......+|++|+++.|||+|++++
T Consensus 265 ~~~~~~~~~----~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l 340 (381)
T 1n7h_A 265 MWLMLQQEK----PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGF 340 (381)
T ss_dssp HHHHHTSSS----CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCH
T ss_pred HHHHHhCCC----CCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHHhcCCcccCCH
Confidence 999998762 4899999999999999999999999976421 11111 1233445567899999999999999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 043169 398 QTGLKKFVRWYLSYYG 413 (421)
Q Consensus 398 ~e~l~~~~~~~~~~~~ 413 (421)
+|+|+++++||.++.+
T Consensus 341 ~e~l~~~~~~~~~~~~ 356 (381)
T 1n7h_A 341 EKLVKMMVDEDLELAK 356 (381)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999998764
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=335.58 Aligned_cols=300 Identities=21% Similarity=0.366 Sum_probs=244.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+||||||+||||++|+++|+++| ++|++++|+.+... . ... .++. +.+|++|.+.++++++..
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~-----~~~--~~~~-~~~d~~~~~~~~~~~~~~~~ 113 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--F-----VNL--VDLN-IADYMDKEDFLIQIMAGEEF 113 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--G-----GGT--TTSC-CSEEEEHHHHHHHHHTTCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--h-----hcc--cCce-EeeecCcHHHHHHHHhhccc
Confidence 567899999999999999999999999 99999998654210 0 011 1233 678999999999998752
Q ss_pred -CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHH
Q 043169 165 -AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
++|+|||+||.... ...+++..+++|+.|+.+++++|++.++ +||++||.++|+.....+++|+++. .|.+.|+
T Consensus 114 ~~~d~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~ 188 (357)
T 2x6t_A 114 GDVEAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVFG 188 (357)
T ss_dssp SSCCEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGCSCSSCCCSSGGGC-CCSSHHH
T ss_pred CCCCEEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcchHHhCCCCCCCcCCcCCC-CCCChhH
Confidence 46999999997653 3456778999999999999999999885 9999999999997766678887755 6788999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CChHHHHHHHHHcCCCeEEEecCCCCcc-eeecccHHHHH
Q 043169 244 ATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP----DMAYFSFTRNILQGKPITVYRGKNHVDL-ARDFTYIDDIV 318 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~Dva 318 (421)
.+|.++|.+++.+++++|++++++||++||||+... ...+..++..+..++++.++ ++++. .++|+|++|+|
T Consensus 189 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~v~Dva 265 (357)
T 2x6t_A 189 YSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF---EGSENFKRDFVYVGDVA 265 (357)
T ss_dssp HHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEE---TTGGGCEECEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEe---CCCCcceEccEEHHHHH
Confidence 999999999999988889999999999999997653 34667788888888887776 56778 99999999999
Q ss_pred HHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCC---CCCCcccCChHHHHHHcCC-CcC
Q 043169 319 KGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN---GDVPFTHANISSAQKEFGY-RPT 394 (421)
Q Consensus 319 ~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~ka~~~lG~-~p~ 394 (421)
++++.+++.+. +++||+++++++++.|+++.+.+.+|.+ .+...+.+.. ........|++|+++ ||| .|.
T Consensus 266 ~ai~~~~~~~~----~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~-lG~~~~~ 339 (357)
T 2x6t_A 266 DVNLWFLENGV----SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYDKPF 339 (357)
T ss_dssp HHHHHHHHHCC----CEEEEESCSCCEEHHHHHHHHHHHHTCC-CCEEECCCGGGTTSCCSBCCCCCHHHHH-TTCCCCC
T ss_pred HHHHHHHhcCC----CCeEEecCCCcccHHHHHHHHHHHcCCC-CceecCCCcccccccccccccCHHHHHH-cCCCCCC
Confidence 99999998762 7899999999999999999999999987 4444444321 112345678899976 999 788
Q ss_pred CCHHHHHHHHHHHHHHH
Q 043169 395 TDLQTGLKKFVRWYLSY 411 (421)
Q Consensus 395 ~~l~e~l~~~~~~~~~~ 411 (421)
++++|+|+++++||+++
T Consensus 340 ~~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 340 KTVAEGVTEYMAWLNRD 356 (357)
T ss_dssp CCHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 89999999999999765
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-43 Score=331.56 Aligned_cols=300 Identities=19% Similarity=0.263 Sum_probs=236.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKR--GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+|+||||||+||||++++++|+++ |++|++++|+.... . .. .++.++.+|++|.+++.+++++.++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~----~~------~~~~~~~~D~~d~~~~~~~~~~~~~d 70 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNT-D----VV------NSGPFEVVNALDFNQIEHLVEVHKIT 70 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSC-H----HH------HSSCEEECCTTCHHHHHHHHHHTTCC
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccc-c----cc------CCCceEEecCCCHHHHHHHHhhcCCC
Confidence 478999999999999999999999 89999999976531 1 11 25778999999999999999866679
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC-CCCCCCCCCCCCCChHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN-VPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~-~~~~e~~~~~~~~~~Y~~sK 246 (421)
+|||+||.... ....++...+++|+.++.+++++|++.+++ +||++||.++|+.... .+.+|+.+. .|.+.|+.+|
T Consensus 71 ~vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~-~~~~~Y~~sK 147 (312)
T 2yy7_A 71 DIYLMAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVFGPTTPKENTPQYTIM-EPSTVYGISK 147 (312)
T ss_dssp EEEECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGCCTTSCSSSBCSSCBC-CCCSHHHHHH
T ss_pred EEEECCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHhCCCCCCCCccccCcC-CCCchhHHHH
Confidence 99999997543 234677889999999999999999998865 9999999999986543 455555543 6789999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----C-hHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD----M-AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
+++|.+++.+++++|++++++||+++|||...+. . ....+. ....++....+ ++++..++|+|++|+|+++
T Consensus 148 ~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~ 223 (312)
T 2yy7_A 148 QAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFY-KAIADKKYECF---LSSETKMPMMYMDDAIDAT 223 (312)
T ss_dssp HHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHH-HHHHTSEEEES---SCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHH-HHHcCCCeEEe---cCCCceeeeeeHHHHHHHH
Confidence 9999999999888899999999999999764332 1 333343 34444545544 4677899999999999999
Q ss_pred HHhhhcCCCCC-CceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCC--CCCCcccCChHHHHHHcCCCcCCCHH
Q 043169 322 LGSLDTSAGPA-PYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN--GDVPFTHANISSAQKEFGYRPTTDLQ 398 (421)
Q Consensus 322 ~~~l~~~~~~~-~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~--~~~~~~~~d~~ka~~~lG~~p~~~l~ 398 (421)
+.+++.+.... .+++||+++ +.+|+.|+++.+.+.+|. ..+.+.+..+. .......+|++|+++.|||+|+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~ 301 (312)
T 2yy7_A 224 INIMKAPVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIPE-FTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDLE 301 (312)
T ss_dssp HHHHHSCGGGCCCSSCEECCS-EEECHHHHHHHHHTTCTT-CEEEECCCTHHHHHTTSCSSBCCHHHHHHHCCCCCCCHH
T ss_pred HHHHhCcccccccCceEEeCC-CccCHHHHHHHHHHHCCC-CceEeccCccccccccccccCCHHHHHHHcCCCCCCCHH
Confidence 99998762211 258999996 789999999999999983 22222221000 01112467999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043169 399 TGLKKFVRWYL 409 (421)
Q Consensus 399 e~l~~~~~~~~ 409 (421)
|+|+++++||+
T Consensus 302 ~~l~~~~~~~k 312 (312)
T 2yy7_A 302 SMTKDMIEHLS 312 (312)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999984
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=328.95 Aligned_cols=292 Identities=18% Similarity=0.169 Sum_probs=232.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.+|+||||||+||||++++++|+++|++|++++|+.+..+. ....+++++.+|++|.+++.++++++ |+
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------l~~~~~~~~~~Dl~d~~~~~~~~~~~--d~ 80 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR---------LAYLEPECRVAEMLDHAGLERALRGL--DG 80 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG---------GGGGCCEEEECCTTCHHHHHHHTTTC--SE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh---------hccCCeEEEEecCCCHHHHHHHHcCC--CE
Confidence 44799999999999999999999999999999997653211 11237899999999999999999875 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC--CCCCCCCCCCCC----CChH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN--VPFSEADRTDQP----ASLY 242 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~--~~~~e~~~~~~~----~~~Y 242 (421)
|||+||... .+..++...+++|+.++.+++++|++.+++ +||++||.++|+.... .+ +|+++. .| .+.|
T Consensus 81 vih~a~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~-~E~~~~-~p~~~~~~~Y 155 (342)
T 2x4g_A 81 VIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVGSAYAMPRHPQGLPG-HEGLFY-DSLPSGKSSY 155 (342)
T ss_dssp EEEC--------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEECCGGGSCCCTTSSCB-CTTCCC-SSCCTTSCHH
T ss_pred EEECCccCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHhhCcCCCCCCC-CCCCCC-CccccccChH
Confidence 999999754 234577889999999999999999998865 9999999999986554 33 666554 56 7899
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC-CCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWG-RPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
+.+|+++|.+++.+++. |++++++||+++|||+. ... +..++..+..+....+ ++..++|+|++|+|+++
T Consensus 156 ~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~i~v~Dva~~~ 226 (342)
T 2x4g_A 156 VLCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT--TGRVITAIGNGEMTHY------VAGQRNVIDAAEAGRGL 226 (342)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS--TTHHHHHHHTTCCCEE------ECCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc--HHHHHHHHHcCCCccc------cCCCcceeeHHHHHHHH
Confidence 99999999999999887 99999999999999976 322 4567777777776544 35688999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCC----------------C-----CCC-----C
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP----------------G-----NGD-----V 375 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~----------------~-----~~~-----~ 375 (421)
+.+++.+. . +++||+++++ +|+.|+++.+.+.+|.+.+. ..|.. . ..+ .
T Consensus 227 ~~~~~~~~--~-g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (342)
T 2x4g_A 227 LMALERGR--I-GERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMA 301 (342)
T ss_dssp HHHHHHSC--T-TCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC----------------CCTT
T ss_pred HHHHhCCC--C-CceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHh
Confidence 99998762 2 7899999999 99999999999999987654 33311 0 001 1
Q ss_pred CcccCChHHHHHHcCC-CcCCCHHHHHHHHHHHHHHH
Q 043169 376 PFTHANISSAQKEFGY-RPTTDLQTGLKKFVRWYLSY 411 (421)
Q Consensus 376 ~~~~~d~~ka~~~lG~-~p~~~l~e~l~~~~~~~~~~ 411 (421)
....+|++|+++.||| +| ++++|+|+++++||+++
T Consensus 302 ~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~ 337 (342)
T 2x4g_A 302 GGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDN 337 (342)
T ss_dssp CCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHT
T ss_pred cCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHc
Confidence 3456899999999999 99 79999999999999875
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=329.81 Aligned_cols=293 Identities=23% Similarity=0.313 Sum_probs=234.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+++|+||||||+||||++++++|+++|++|++++|+......... ...++.++.+|++|.+++.+++++.++
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~-------~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 90 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLK-------DHPNLTFVEGSIADHALVNQLIGDLQP 90 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSC-------CCTTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHh-------hcCCceEEEEeCCCHHHHHHHHhccCC
Confidence 3678999999999999999999999999999999997543211110 014789999999999999999988556
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC----CCCCCCCCCCCCCCCCC-Ch
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG----LNENVPFSEADRTDQPA-SL 241 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g----~~~~~~~~e~~~~~~~~-~~ 241 (421)
|+||||||..... ...+++ +++|+.|+.+++++|++.+++ +||++||.++|+ .... +++|++ .|. +.
T Consensus 91 D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~-~iV~~SS~~~~g~~~~~~~~-~~~E~~---~p~~~~ 162 (333)
T 2q1w_A 91 DAVVHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVG-RFVYFQTALCYGVKPIQQPV-RLDHPR---NPANSS 162 (333)
T ss_dssp SEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGCSCCCSSSB-CTTSCC---CCTTCH
T ss_pred cEEEECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCC-EEEEECcHHHhCCCcccCCC-CcCCCC---CCCCCc
Confidence 9999999986542 222333 899999999999999998864 999999999998 5444 677766 455 89
Q ss_pred HHHHHHHHHHHHHH-HHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHH
Q 043169 242 YAATKKAGEEIAHT-YNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 242 Y~~sK~~~e~~~~~-~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 320 (421)
|+.+|.++|.+++. +. +++++||+++|||+ .....++.++..+..+. .++ + ++..++|+|++|+|++
T Consensus 163 Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~-~~~~~~~~~~~~~~~~~--~~~---~-~~~~~~~i~v~Dva~a 230 (333)
T 2q1w_A 163 YAISKSANEDYLEYSGL-----DFVTFRLANVVGPR-NVSGPLPIFFQRLSEGK--KCF---V-TKARRDFVFVKDLARA 230 (333)
T ss_dssp HHHHHHHHHHHHHHHTC-----CEEEEEESEEESTT-CCSSHHHHHHHHHHTTC--CCE---E-EECEECEEEHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhC-----CeEEEeeceEECcC-CcCcHHHHHHHHHHcCC--eee---C-CCceEeeEEHHHHHHH
Confidence 99999999999987 64 78999999999997 33456677777777776 233 2 4678899999999999
Q ss_pred HHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCC---CCCCcccCChHHHHHHcCCCcCCCH
Q 043169 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN---GDVPFTHANISSAQKEFGYRPTTDL 397 (421)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~ka~~~lG~~p~~~l 397 (421)
++.+++.+ . +++||+++++++++.|+++.+.+.+|.+ .+...+.+.. .-.....+|++|+++. ||+|++++
T Consensus 231 i~~~~~~~--~--g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~~~ 304 (333)
T 2q1w_A 231 TVRAVDGV--G--HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRELGPDDAPSILLDPSRTIQDF-GKIEFTPL 304 (333)
T ss_dssp HHHHHTTC--C--CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEECCTTSCCCCCBCCHHHHHHH-CCCCCCCH
T ss_pred HHHHHhcC--C--CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCCcccccccccccCCHHHHHhc-CCCcCCCH
Confidence 99999876 2 7999999999999999999999999987 4433332210 0114567899999988 99999999
Q ss_pred HHHHHHHHHHHHHHh
Q 043169 398 QTGLKKFVRWYLSYY 412 (421)
Q Consensus 398 ~e~l~~~~~~~~~~~ 412 (421)
+|+|+++++||+++-
T Consensus 305 ~~~l~~~~~~~~~~~ 319 (333)
T 2q1w_A 305 KETVAAAVAYFREYG 319 (333)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHC
Confidence 999999999998764
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=327.92 Aligned_cols=286 Identities=18% Similarity=0.190 Sum_probs=237.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++++++|+ +|++|++++|+. .++.+|++|.+++.+++++.++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~--------------------~~~~~D~~d~~~~~~~~~~~~~d~vi 59 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHS--------------------KEFCGDFSNPKGVAETVRKLRPDVIV 59 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTC--------------------SSSCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEecccc--------------------ccccccCCCHHHHHHHHHhcCCCEEE
Confidence 589999999999999999999 899999999843 13578999999999999986679999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+||.........++...+++|+.|+.+++++|++.+. +||++||.++|+.....+++|+++. .|.+.|+.+|.++|
T Consensus 60 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~vy~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 136 (299)
T 1n2s_A 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYSTDYVFPGTGDIPWQETDAT-SPLNVYGKTKLAGE 136 (299)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEEGGGSCCCTTCCBCTTSCC-CCSSHHHHHHHHHH
T ss_pred ECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEecccEEeCCCCCCCCCCCCC-CCccHHHHHHHHHH
Confidence 99998765555677888999999999999999998885 8999999999998777788887765 67889999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCC
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
.+++.+. .+++++||+++|||+.. ..+..++..+..+.++..+ + ++.++|+|++|+|++++.+++.+..
T Consensus 137 ~~~~~~~----~~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~v~Dva~~~~~~~~~~~~ 205 (299)
T 1n2s_A 137 KALQDNC----PKHLIFRTSWVYAGKGN--NFAKTMLRLAKERQTLSVI---N--DQYGAPTGAELLADCTAHAIRVALN 205 (299)
T ss_dssp HHHHHHC----SSEEEEEECSEECSSSC--CHHHHHHHHHHHCSEEEEE---C--SCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC----CCeEEEeeeeecCCCcC--cHHHHHHHHHhcCCCEEee---c--CcccCCeeHHHHHHHHHHHHHHhcc
Confidence 9998864 48999999999999654 4566778888888877665 2 4789999999999999999986511
Q ss_pred CC-CceEEEecCCCccCHHHHHHHHHHHhCCcc------ccceecCC----CCCCCCcccCChHHHHHHcCCCcCCCHHH
Q 043169 331 PA-PYRIFNLGNTSPVTVPKLVNILERHLKVKA------KKNVIEMP----GNGDVPFTHANISSAQKEFGYRPTTDLQT 399 (421)
Q Consensus 331 ~~-~~~~~~i~~~~~~t~~el~~~l~~~~g~~~------~~~~~~~~----~~~~~~~~~~d~~ka~~~lG~~p~~~l~e 399 (421)
.. .+++||+++++++|+.|+++.+.+.+|.+. .....+.. .........+|++|+++.|||+|+ +++|
T Consensus 206 ~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~ 284 (299)
T 1n2s_A 206 KPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QWEL 284 (299)
T ss_dssp CGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BHHH
T ss_pred ccccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcCCCCC-CHHH
Confidence 12 378999999999999999999999998762 22222211 112234567899999999999998 8999
Q ss_pred HHHHHHHHHHHHh
Q 043169 400 GLKKFVRWYLSYY 412 (421)
Q Consensus 400 ~l~~~~~~~~~~~ 412 (421)
+|+++++||+++.
T Consensus 285 ~l~~~~~~~~~~~ 297 (299)
T 1n2s_A 285 GVKRMLTEMFTTT 297 (299)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998653
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=327.85 Aligned_cols=297 Identities=21% Similarity=0.363 Sum_probs=223.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---CCc
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---AFT 167 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---~~d 167 (421)
+||||||+||||++++++|+++| ++|++++|+.+... ... . .++. +.+|++|.+.+.+++++. ++|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~--~-----~~~~-~~~d~~~~~~~~~~~~~~~~~~~d 70 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVN--L-----VDLN-IADYMDKEDFLIQIMAGEEFGDVE 70 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHH--H-----HTSC-CSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhh--c-----Ccce-eccccccHHHHHHHHhccccCCCc
Confidence 48999999999999999999999 99999998654211 111 1 1223 678999999999998762 469
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
+|||+||.... ...++...+++|+.|+.+++++|++.++ +||++||.++||.....+++|+++. .|.+.|+.+|.
T Consensus 71 ~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~~sK~ 145 (310)
T 1eq2_A 71 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKF 145 (310)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCSSGGGC-CCSSHHHHHHH
T ss_pred EEEECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeHHHhCCCCCCCCCCCCCC-CCCChhHHHHH
Confidence 99999997653 4456778999999999999999999885 9999999999997766677777654 67889999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CChHHHHHHHHHcCCCeEEEecCCCCcc-eeecccHHHHHHHHH
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP----DMAYFSFTRNILQGKPITVYRGKNHVDL-ARDFTYIDDIVKGCL 322 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~Dva~a~~ 322 (421)
++|.+++.+++++|++++++||++||||+... ...+..++..+..++++.++ ++++. .++|+|++|+|++++
T Consensus 146 ~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~i~v~Dva~~~~ 222 (310)
T 1eq2_A 146 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF---EGSENFKRDFVYVGDVADVNL 222 (310)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC----------------CBCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEe---cCCCcceEccEEHHHHHHHHH
Confidence 99999999988889999999999999997642 34667788888888877665 46778 899999999999999
Q ss_pred HhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCC---CCCCcccCChHHHHHHcCC-CcCCCHH
Q 043169 323 GSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN---GDVPFTHANISSAQKEFGY-RPTTDLQ 398 (421)
Q Consensus 323 ~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~ka~~~lG~-~p~~~l~ 398 (421)
.+++.+. +++||+++++++|+.|+++.+.+.+|.+ .+...+.+.. .......+|++|+++ ||| .|.++++
T Consensus 223 ~~~~~~~----~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~~~~~~l~ 296 (310)
T 1eq2_A 223 WFLENGV----SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYDKPFKTVA 296 (310)
T ss_dssp HHHHHCC----CEEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHH-TTCCCCCCCHH
T ss_pred HHHhcCC----CCeEEEeCCCccCHHHHHHHHHHHcCCC-CceeCCCChhhhcccccccccchHHHHh-cCCCCCCCCHH
Confidence 9998762 7899999999999999999999999976 3333443321 112345678899975 999 7888999
Q ss_pred HHHHHHHHHHHHHh
Q 043169 399 TGLKKFVRWYLSYY 412 (421)
Q Consensus 399 e~l~~~~~~~~~~~ 412 (421)
|+|+++++||++++
T Consensus 297 ~~l~~~~~~~~~~~ 310 (310)
T 1eq2_A 297 EGVTEYMAWLNRDA 310 (310)
T ss_dssp HHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999997653
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=320.67 Aligned_cols=278 Identities=20% Similarity=0.193 Sum_probs=234.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
...|+||||||+||||++++++|+++|++|++++|+ .+|++|.+++.+++++.++|
T Consensus 10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~Dl~d~~~~~~~~~~~~~d 65 (292)
T 1vl0_A 10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ------------------------DLDITNVLAVNKFFNEKKPN 65 (292)
T ss_dssp --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT------------------------TCCTTCHHHHHHHHHHHCCS
T ss_pred cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc------------------------cCCCCCHHHHHHHHHhcCCC
Confidence 456899999999999999999999999999999983 37999999999999865679
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
+||||||......+..++...+++|+.|+.+++++|++.+. +||++||.++|+.....+++|+++. .+.+.|+.+|+
T Consensus 66 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~SS~~v~~~~~~~~~~E~~~~-~~~~~Y~~sK~ 142 (292)
T 1vl0_A 66 VVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQISTDYVFDGEAKEPITEFDEV-NPQSAYGKTKL 142 (292)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCSCCSSCBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEechHHeECCCCCCCCCCCCCC-CCccHHHHHHH
Confidence 99999998765555677889999999999999999999884 9999999999998776788887765 67789999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhc
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 327 (421)
++|.+++.+ +.+++++||+.|||| . ...+..++..+..+.++.++ ++..++|+|++|+|++++.+++.
T Consensus 143 ~~E~~~~~~----~~~~~~lR~~~v~G~-~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~ 210 (292)
T 1vl0_A 143 EGENFVKAL----NPKYYIVRTAWLYGD-G--NNFVKTMINLGKTHDELKVV-----HDQVGTPTSTVDLARVVLKVIDE 210 (292)
T ss_dssp HHHHHHHHH----CSSEEEEEECSEESS-S--SCHHHHHHHHHHHCSEEEEE-----SSCEECCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh----CCCeEEEeeeeeeCC-C--cChHHHHHHHHhcCCcEEee-----cCeeeCCccHHHHHHHHHHHHhc
Confidence 999999885 457899999999999 3 24566777777777776664 24789999999999999999987
Q ss_pred CCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCC---C-CCCCCcccCChHHHHHHcCCCcCCCHHHHHHH
Q 043169 328 SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP---G-NGDVPFTHANISSAQKEFGYRPTTDLQTGLKK 403 (421)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~---~-~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~ 403 (421)
+ .+++||+++++++|+.|+++.+.+.+|.+......+.. . ........+|++|+++.|||+|+ +++|+|++
T Consensus 211 ~----~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~~l~~ 285 (292)
T 1vl0_A 211 K----NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKE 285 (292)
T ss_dssp T----CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHH
T ss_pred C----CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCC-CHHHHHHH
Confidence 5 47899999999999999999999999987554444321 1 12334567899999999999999 99999999
Q ss_pred HHHHHH
Q 043169 404 FVRWYL 409 (421)
Q Consensus 404 ~~~~~~ 409 (421)
+++||+
T Consensus 286 ~~~~~~ 291 (292)
T 1vl0_A 286 YIDLLQ 291 (292)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999986
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=321.55 Aligned_cols=303 Identities=18% Similarity=0.254 Sum_probs=236.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKR--GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+||||||+||||++++++|+++ |++|++++|+....+ ++.++.+|++|.+++.++++..++|+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--------------~~~~~~~D~~d~~~~~~~~~~~~~d~v 66 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG--------------GIKFITLDVSNRDEIDRAVEKYSIDAI 66 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT--------------TCCEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc--------------CceEEEecCCCHHHHHHHHhhcCCcEE
Confidence 4899999999999999999998 899999998654221 467899999999999999986667999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC-CCCCCCCCCCCCCChHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN-VPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~-~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
||+||.... ....++...+++|+.|+.+++++|++.+++ +||++||.++|+.... .+..|+.+ ..|.+.|+.+|++
T Consensus 67 ih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~-~~p~~~Y~~sK~~ 143 (317)
T 3ajr_A 67 FHLAGILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIGVFGPETPKNKVPSITI-TRPRTMFGVTKIA 143 (317)
T ss_dssp EECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCTTSCSSSBCSSSC-CCCCSHHHHHHHH
T ss_pred EECCcccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCCCCCCcccccc-CCCCchHHHHHHH
Confidence 999997542 234567889999999999999999998865 9999999999986532 34455444 4678999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHh
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGS 324 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 324 (421)
+|.+++.+.+++|++++++||+.+||+...+. .....++.....++....+ ++++..++|+|++|+|++++.+
T Consensus 144 ~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~ 220 (317)
T 3ajr_A 144 AELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCY---LAPNRALPMMYMPDALKALVDL 220 (317)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEEC---SCTTCCEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceee---cCccceeeeeEHHHHHHHHHHH
Confidence 99999999888899999999999999754321 1222333444555555554 4567889999999999999999
Q ss_pred hhcCCCC-CCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCC--CCCCcccCChHHHHHHcCCCcCCCHHHHH
Q 043169 325 LDTSAGP-APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN--GDVPFTHANISSAQKEFGYRPTTDLQTGL 401 (421)
Q Consensus 325 l~~~~~~-~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~--~~~~~~~~d~~ka~~~lG~~p~~~l~e~l 401 (421)
++.+... ..+++||+++ +.+|+.|+++.+.+.+|. ..+.+.+.... .......+|++|+++.|||+|+++++|+|
T Consensus 221 l~~~~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l 298 (317)
T 3ajr_A 221 YEADRDKLVLRNGYNVTA-YTFTPSELYSKIKERIPE-FEIEYKEDFRDKIAATWPESLDSSEASNEWGFSIEYDLDRTI 298 (317)
T ss_dssp HHCCGGGCSSCSCEECCS-EEECHHHHHHHHHTTCCS-CCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCCCCCCHHHHH
T ss_pred HhCCccccccCceEecCC-ccccHHHHHHHHHHHCCc-cccccccccchhhccccccccCHHHHHHHcCCCCCCCHHHHH
Confidence 9875211 1358999986 679999999999999883 22222221000 01112357999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 043169 402 KKFVRWYLSYYGYNR 416 (421)
Q Consensus 402 ~~~~~~~~~~~~~~~ 416 (421)
+++++||+++...+.
T Consensus 299 ~~~~~~~~~~~~~~g 313 (317)
T 3ajr_A 299 DDMIDHISEKLGIEG 313 (317)
T ss_dssp HHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhhhcccc
Confidence 999999999877543
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=324.75 Aligned_cols=281 Identities=18% Similarity=0.169 Sum_probs=229.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|+||||| +||||++|+++|+++|++|++++|+.+.. ..++.++.+|++|.+++.+++++ ++|+
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------------~~~~~~~~~Dl~d~~~~~~~~~~-~~d~ 66 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM-------------PAGVQTLIADVTRPDTLASIVHL-RPEI 66 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC-------------CTTCCEEECCTTCGGGCTTGGGG-CCSE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc-------------ccCCceEEccCCChHHHHHhhcC-CCCE
Confidence 468999999 59999999999999999999999965531 36789999999999999998886 4699
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
|||+||.. ..++...+++|+.++.+++++|++.+++ +||++||.++||.....+++|+++. .|.+.|+.+|.+
T Consensus 67 vih~a~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~~ 139 (286)
T 3gpi_A 67 LVYCVAAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVSSTGVYGQEVEEWLDEDTPP-IAKDFSGKRMLE 139 (286)
T ss_dssp EEECHHHH-----HHC-----CCSHHHHHHHHHHTTTSCCC-EEEEEEEGGGCCCCCSSEECTTSCC-CCCSHHHHHHHH
T ss_pred EEEeCCCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEcccEEEcCCCCCCCCCCCCC-CCCChhhHHHHH
Confidence 99999863 3567788999999999999999988865 9999999999998877788888765 678999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
+|.+ .++ ++++++||+++|||+.. .++..+.+ ... .++++..++|+|++|+|++++.+++.+
T Consensus 140 ~E~~-~~~-----~~~~ilR~~~v~G~~~~------~~~~~~~~-~~~-----~~~~~~~~~~i~v~Dva~~~~~~~~~~ 201 (286)
T 3gpi_A 140 AEAL-LAA-----YSSTILRFSGIYGPGRL------RMIRQAQT-PEQ-----WPARNAWTNRIHRDDGAAFIAYLIQQR 201 (286)
T ss_dssp HHHH-GGG-----SSEEEEEECEEEBTTBC------HHHHHTTC-GGG-----SCSSBCEECEEEHHHHHHHHHHHHHHH
T ss_pred HHHH-Hhc-----CCeEEEecccccCCCch------hHHHHHHh-ccc-----CCCcCceeEEEEHHHHHHHHHHHHhhh
Confidence 9998 653 89999999999999764 34444544 221 146788999999999999999999884
Q ss_pred CCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCC-CHHHHHHHHHHH
Q 043169 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT-DLQTGLKKFVRW 407 (421)
Q Consensus 329 ~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~-~l~e~l~~~~~~ 407 (421)
.....+++||+++++++|+.|+++.+.+.+|.+.+....+ .......+|++|++ .|||+|++ +++|+|+++++|
T Consensus 202 ~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----~~~~~~~~d~~k~~-~lG~~p~~~~l~e~l~~~~~~ 276 (286)
T 3gpi_A 202 SHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP----PVQGNKKLSNARLL-ASGYQLIYPDYVSGYGALLAA 276 (286)
T ss_dssp TTSCCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC----CBCSSCEECCHHHH-HTTCCCSSCSHHHHHHHHHHH
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc----ccCCCeEeeHHHHH-HcCCCCcCCcHHHHHHHHHHH
Confidence 2235689999999999999999999999999876544322 34455678999997 89999999 699999999999
Q ss_pred HHHHhCC
Q 043169 408 YLSYYGY 414 (421)
Q Consensus 408 ~~~~~~~ 414 (421)
++.....
T Consensus 277 ~~~~~~~ 283 (286)
T 3gpi_A 277 MREGHHH 283 (286)
T ss_dssp HTC----
T ss_pred Hhccccc
Confidence 9876544
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=352.72 Aligned_cols=311 Identities=22% Similarity=0.344 Sum_probs=254.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHH-HHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKL-LAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-~~~~~~~~~ 165 (421)
+++|+||||||+||||++++++|+++ |++|++++|+.+.... .....++.++.+|++|.++ +.++++++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~--------~~~~~~v~~v~~Dl~d~~~~~~~~~~~~- 383 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR--------FLNHPHFHFVEGDISIHSEWIEYHVKKC- 383 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGG--------GTTCTTEEEEECCTTTCHHHHHHHHHHC-
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhh--------hccCCceEEEECCCCCcHHHHHHhhcCC-
Confidence 46789999999999999999999998 8999999997653321 1123578999999999765 77888866
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCC------CCCC
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRT------DQPA 239 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~------~~~~ 239 (421)
|+|||+||.........++...+++|+.|+.+++++|++.+ + +||++||.++||.....+++|+++. ..+.
T Consensus 384 -D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~-r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~ 460 (660)
T 1z7e_A 384 -DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPR 460 (660)
T ss_dssp -SEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTT
T ss_pred -CEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-C-EEEEEecHHHcCCCCCcccCCCccccccCcccCCC
Confidence 99999999876554556778899999999999999999987 4 9999999999987766677777642 1355
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 240 SLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+.|+.||.++|.+++.+++++|++++++|||+||||+... ...+..++..+..+.++.++ +++++.++|
T Consensus 461 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~g~~~~~~ 537 (660)
T 1z7e_A 461 WIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCF 537 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEE---GGGCCEEEC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEe---CCCCeEEEE
Confidence 6899999999999999988889999999999999997642 44567788888889888776 467889999
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC-ccCHHHHHHHHHHHhCCccccceecCC--------------CCCCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS-PVTVPKLVNILERHLKVKAKKNVIEMP--------------GNGDVP 376 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~-~~t~~el~~~l~~~~g~~~~~~~~~~~--------------~~~~~~ 376 (421)
+|++|+|++++.+++.+.....+++||+++++ ++|+.|+++.+.+.+|.+......+.. ...+..
T Consensus 538 i~v~Dva~ai~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 617 (660)
T 1z7e_A 538 TDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVE 617 (660)
T ss_dssp EEHHHHHHHHHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCCCCS
T ss_pred EEHHHHHHHHHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccccccccchh
Confidence 99999999999999876322467999999986 899999999999999865322222211 012234
Q ss_pred cccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhC
Q 043169 377 FTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 377 ~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 413 (421)
...+|++|+++.|||+|+++++|+|+++++||+++..
T Consensus 618 ~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~ 654 (660)
T 1z7e_A 618 HRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_dssp CCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSC
T ss_pred hcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhcc
Confidence 5678999999999999999999999999999998765
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-41 Score=351.64 Aligned_cols=320 Identities=26% Similarity=0.363 Sum_probs=246.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+++|+||||||+||||++|+++|+++|++|++++|+............ .....++.++.+|++|.+++.++++..++
T Consensus 8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~--~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 85 (699)
T 1z45_A 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLE--VLTKHHIPFYEVDLCDRKGLEKVFKEYKI 85 (699)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHH--HHHTSCCCEEECCTTCHHHHHHHHHHSCC
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHh--hccCCceEEEEcCCCCHHHHHHHHHhCCC
Confidence 3678999999999999999999999999999999997655433332221 12246789999999999999999986667
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCC----CCCCCCCCCCCCCCChH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNE----NVPFSEADRTDQPASLY 242 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~----~~~~~e~~~~~~~~~~Y 242 (421)
|+|||+||.........++...+++|+.|+.+++++|++.+++ +||++||.++||... ..+++|+.+. .+.+.|
T Consensus 86 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~SS~~vyg~~~~~~~~~~~~E~~~~-~p~~~Y 163 (699)
T 1z45_A 86 DSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPY 163 (699)
T ss_dssp CEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSBCTTSCC-CCCSHH
T ss_pred CEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECcHHHhCCCccccccCCccccCCC-CCCChH
Confidence 9999999987654444566788999999999999999988865 999999999998542 2456666544 577899
Q ss_pred HHHHHHHHHHHHHHHHH--hCCcEEEEEeccccCCCCC----------CCChHHHHHHHHHcC--CCeEEEec---CCCC
Q 043169 243 AATKKAGEEIAHTYNHI--YGLSITGLRFFTVYGPWGR----------PDMAYFSFTRNILQG--KPITVYRG---KNHV 305 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~--~gi~~~~vrp~~v~G~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~---~~~~ 305 (421)
+.+|+++|.+++.++.+ .|++++++||+++|||+.. ....+..+. .+..+ .++.++.. ..++
T Consensus 164 ~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g 242 (699)
T 1z45_A 164 GHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMA-QVAVGRREKLYIFGDDYDSRDG 242 (699)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHH-HHHTTSSSCCCCC------CCS
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHH-HHHhcCCCceEEeCCcccCCCC
Confidence 99999999999999877 6999999999999998532 123344343 34433 34544420 0157
Q ss_pred cceeecccHHHHHHHHHHhhhcCC----CCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSA----GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHAN 381 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~----~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d 381 (421)
++.++|+|++|+|++++.+++... ....+++||+++++++++.|+++.+.+.+|.+.+....+. +..+.....+|
T Consensus 243 ~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d 321 (699)
T 1z45_A 243 TPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR-RAGDVLNLTAK 321 (699)
T ss_dssp SCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----------CCCCCBC
T ss_pred CeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCC-CCCccccccCC
Confidence 889999999999999999987421 1223689999999999999999999999998766544432 23345567799
Q ss_pred hHHHHHHcCCCcCCCHHHHHHHHHHHHHHHh
Q 043169 382 ISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 382 ~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~ 412 (421)
++|++++|||+|+++++|+|+++++||+++.
T Consensus 322 ~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~ 352 (699)
T 1z45_A 322 PDRAKRELKWQTELQVEDSCKDLWKWTTENP 352 (699)
T ss_dssp CHHHHHHTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999998754
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=320.22 Aligned_cols=291 Identities=19% Similarity=0.215 Sum_probs=209.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+||||||+||||++++++|+++|++|++++|+.+. .+ ++.+|++|.+++.+++++.++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------------~~--~~~~Dl~d~~~~~~~~~~~~~d~v 64 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR---------------PK--FEQVNLLDSNAVHHIIHDFQPHVI 64 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CHHHHHHHCCSEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC---------------CC--eEEecCCCHHHHHHHHHhhCCCEE
Confidence 5799999999999999999999999999999984321 12 778999999999999987677999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
|||||......+..++...+++|+.|+.+++++|++.+. +||++||.++|+. ...+++|+++. .+.+.|+.+|.++
T Consensus 65 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~~~-~~~~~~E~~~~-~~~~~Y~~sK~~~ 140 (315)
T 2ydy_A 65 VHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYISSDYVFDG-TNPPYREEDIP-APLNLYGKTKLDG 140 (315)
T ss_dssp EECC-------------------CHHHHHHHHHHHHHTC--EEEEEEEGGGSCS-SSCSBCTTSCC-CCCSHHHHHHHHH
T ss_pred EECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEchHHHcCC-CCCCCCCCCCC-CCcCHHHHHHHHH
Confidence 999998655445667888999999999999999999874 9999999999987 55677887655 6788999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCC-ChHHHHHHHHH-cCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhc
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPD-MAYFSFTRNIL-QGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 327 (421)
|.+++.+ +++++++||+.||||..... ..+..++..+. .+.++.+. ++..++|+|++|+|++++.++++
T Consensus 141 e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~a~~~~~~~ 211 (315)
T 2ydy_A 141 EKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMD-----HWQQRFPTHVKDVATVCRQLAEK 211 (315)
T ss_dssp HHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEE-----CSSBBCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeec-----cCceECcEEHHHHHHHHHHHHHh
Confidence 9999885 57789999999999976521 23445666666 67766553 35788999999999999999875
Q ss_pred C-CCCCCceEEEecCCCccCHHHHHHHHHHHhCCccc-cceecC-CC--CCCCCcccCChHHHHHHcCCCcCCCHHHHHH
Q 043169 328 S-AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK-KNVIEM-PG--NGDVPFTHANISSAQKEFGYRPTTDLQTGLK 402 (421)
Q Consensus 328 ~-~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~-~~~~~~-~~--~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~ 402 (421)
. .....+++||+++++++++.|+++.+.+.+|.+.. +...+. +. ........+|++|+++. ||+|.++++|+|+
T Consensus 212 ~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~ 290 (315)
T 2ydy_A 212 RMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL-GIGQRTPFRIGIK 290 (315)
T ss_dssp HHTCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT-TCCCCCCHHHHHH
T ss_pred hccccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc-CCCCCCCHHHHHH
Confidence 3 11245789999999999999999999999998754 222222 11 12233567899999887 9999999999999
Q ss_pred HHHHHHHHH
Q 043169 403 KFVRWYLSY 411 (421)
Q Consensus 403 ~~~~~~~~~ 411 (421)
++++||+++
T Consensus 291 ~~~~~~~~~ 299 (315)
T 2ydy_A 291 ESLWPFLID 299 (315)
T ss_dssp HHHGGGCC-
T ss_pred HHHHHHccc
Confidence 999999876
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=318.42 Aligned_cols=305 Identities=20% Similarity=0.168 Sum_probs=242.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-------CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG-------DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL 160 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~ 160 (421)
+++|+||||||+||||++++++|+++| ++|++++|+.+.... ....++.++.+|++|.+++.++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~ 82 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA---------GFSGAVDARAADLSAPGEAEKL 82 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT---------TCCSEEEEEECCTTSTTHHHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc---------ccCCceeEEEcCCCCHHHHHHH
Confidence 578999999999999999999999999 899999997643321 1235788999999999999998
Q ss_pred hhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC----CCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 161 FDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN----PQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 161 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~----~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++. ++|+||||||... ..+..++...+++|+.|+.+++++|++.+ ..++||++||.++|+.....+++|+++.
T Consensus 83 ~~~-~~d~vih~A~~~~-~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~- 159 (342)
T 2hrz_A 83 VEA-RPDVIFHLAAIVS-GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHT- 159 (342)
T ss_dssp HHT-CCSEEEECCCCCH-HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTCCC-
T ss_pred Hhc-CCCEEEECCccCc-ccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCCCC-
Confidence 852 4599999999754 23456778899999999999999998765 1249999999999987656678887765
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccC-CCCCC---CChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYG-PWGRP---DMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.+.+.|+.+|.++|.++++++++++++++++|++.+|| |+... ...+..++..+..+.+..++ .+++..++++
T Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 236 (342)
T 2hrz_A 160 TPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLP---VPESIRHWHA 236 (342)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEEC---SCTTCEEEEE
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeecc---CCCccceeeE
Confidence 67889999999999999999988889999999999998 65432 23456677778888877664 3446778899
Q ss_pred cHHHHHHHHHHhhhcCCC-CCCceEEEecCCCccCHHHHHHHHHHHhCCccc--cceecCCCCC---CCCcccCChHHHH
Q 043169 313 YIDDIVKGCLGSLDTSAG-PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAK--KNVIEMPGNG---DVPFTHANISSAQ 386 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~-~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~--~~~~~~~~~~---~~~~~~~d~~ka~ 386 (421)
|++|+|++++.+++.+.. ...+++||++ ++++|+.|+++.+.+.+|.+.. +...+.+... ......+|++|++
T Consensus 237 ~v~Dva~~~~~~~~~~~~~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 315 (342)
T 2hrz_A 237 SPRSAVGFLIHGAMIDVEKVGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAPGFEAKRAR 315 (342)
T ss_dssp CHHHHHHHHHHHHHSCHHHHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSCCCBCCHHHH
T ss_pred ehHHHHHHHHHHHhccccccCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccccccChHHHH
Confidence 999999999999986510 0146899996 5779999999999999997642 2222211000 0111247999998
Q ss_pred HHcCCCcCCCHHHHHHHHHHHHH
Q 043169 387 KEFGYRPTTDLQTGLKKFVRWYL 409 (421)
Q Consensus 387 ~~lG~~p~~~l~e~l~~~~~~~~ 409 (421)
+ |||+|+++++|+|+++++||+
T Consensus 316 ~-lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 316 E-LGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp H-TTCCCCSSHHHHHHHHHHHHS
T ss_pred H-cCCCCCCCHHHHHHHHHHHhc
Confidence 8 999999999999999999996
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=319.66 Aligned_cols=303 Identities=17% Similarity=0.162 Sum_probs=231.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH--hhcCCceEEE-EcccCCHHHHHHHhhc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA--LLNNHGVFVI-EGDINDAKLLAKLFDA 163 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~~-~~Dl~d~~~~~~~~~~ 163 (421)
.+++|+||||||+||||++++++|+++|++|++++|+.+.. ...... .....++.++ .+|++|.+++.+++++
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 83 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKL----ANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKG 83 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH----HHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccH----HHHHHHhhccCCCceEEEEecCCcChHHHHHHHcC
Confidence 46789999999999999999999999999999999954211 111111 0112578888 8999999999888885
Q ss_pred cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHh-cCCCCeEEEEccccccCCCCC----CCCCCCCC----
Q 043169 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKS-ANPQPSIVWASSSSVYGLNEN----VPFSEADR---- 234 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~-~~~~~riV~~SS~~v~g~~~~----~~~~e~~~---- 234 (421)
+ |+||||||..... .++...+++|+.|+.+++++|.+ .+. ++||++||.++|+.... .+++|++.
T Consensus 84 ~--d~vih~A~~~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~-~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~ 157 (342)
T 1y1p_A 84 A--AGVAHIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSV-KRFVLTSSTVSALIPKPNVEGIYLDEKSWNLES 157 (342)
T ss_dssp C--SEEEECCCCCSCC---SCHHHHHHHHHHHHHHHHHHHHTCTTC-CEEEEECCGGGTCCCCTTCCCCEECTTCCCHHH
T ss_pred C--CEEEEeCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhCCCC-cEEEEeccHHHhcCCCCCCCCcccCccccCchh
Confidence 5 9999999976432 46678999999999999999985 454 49999999999864321 45666652
Q ss_pred -----------CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCC---ChHHHHHHHHHcCCCeEE
Q 043169 235 -----------TDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPD---MAYFSFTRNILQGKPITV 298 (421)
Q Consensus 235 -----------~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~ 298 (421)
+..+.+.|+.||+++|.+++.+++++ +++++++||+++|||..... ..+..++..+..+++..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (342)
T 1y1p_A 158 IDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPA 237 (342)
T ss_dssp HHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHH
T ss_pred hhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccc
Confidence 12345789999999999999998876 79999999999999976543 267788888888887654
Q ss_pred EecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcc
Q 043169 299 YRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFT 378 (421)
Q Consensus 299 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 378 (421)
+. ++ ..++|+|++|+|++++.+++.+ ...++.+. .+++++|+.|+++.+.+.+|.+ .+. .+.+.. .....
T Consensus 238 ~~---~~-~~~~~v~v~Dva~a~~~~~~~~--~~~g~~~~-~~g~~~s~~e~~~~i~~~~~~~-~~~-~~~~~~-~~~~~ 307 (342)
T 1y1p_A 238 LA---LM-PPQYYVSAVDIGLLHLGCLVLP--QIERRRVY-GTAGTFDWNTVLATFRKLYPSK-TFP-ADFPDQ-GQDLS 307 (342)
T ss_dssp HH---TC-CSEEEEEHHHHHHHHHHHHHCT--TCCSCEEE-ECCEEECHHHHHHHHHHHCTTS-CCC-CCCCCC-CCCCC
T ss_pred cc---cC-CcCCEeEHHHHHHHHHHHHcCc--ccCCceEE-EeCCCCCHHHHHHHHHHHCCCc-cCC-CCCCcc-ccccc
Confidence 42 22 5789999999999999999865 23455453 4567799999999999999875 211 111111 12235
Q ss_pred cCChHHHHHHcCC---CcCCCHHHHHHHHHHHHH
Q 043169 379 HANISSAQKEFGY---RPTTDLQTGLKKFVRWYL 409 (421)
Q Consensus 379 ~~d~~ka~~~lG~---~p~~~l~e~l~~~~~~~~ 409 (421)
.+|++|+++.||| .+.++++|+|+++++||+
T Consensus 308 ~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 308 KFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp EECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred cCChHHHHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 6799999999987 456699999999999874
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=311.80 Aligned_cols=296 Identities=15% Similarity=0.148 Sum_probs=233.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-----CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRG-----DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+|+||||||+||||++++++|+++| ++|++++|+.+... ....+++++.+|++|.+++.+++++.
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~----------~~~~~~~~~~~Dl~d~~~~~~~~~~~ 70 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW----------HEDNPINYVQCDISDPDDSQAKLSPL 70 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC----------CCSSCCEEEECCTTSHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc----------cccCceEEEEeecCCHHHHHHHHhcC
Confidence 4789999999999999999999999 99999999765432 12357899999999999999999985
Q ss_pred C-CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhc--CCCCeEE-------EEccccccCCC--CCCCCCCC
Q 043169 165 A-FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA--NPQPSIV-------WASSSSVYGLN--ENVPFSEA 232 (421)
Q Consensus 165 ~-~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~--~~~~riV-------~~SS~~v~g~~--~~~~~~e~ 232 (421)
+ +|+|||+||... .++...+++|+.|+.+++++|++. +++ ++| |+||.++||.. ...+++|+
T Consensus 71 ~~~d~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~-~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~ 144 (364)
T 2v6g_A 71 TDVTHVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLK-HISLQTGRKHYMGPFESYGKIESHDPPYTED 144 (364)
T ss_dssp TTCCEEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCC-EEEEECCTHHHHCCGGGTTTSCCCCSSBCTT
T ss_pred CCCCEEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccc-eEEeccCceEEEechhhccccccCCCCCCcc
Confidence 5 799999999753 456788999999999999999987 554 887 89999999875 34577787
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhC-CcEEEEEeccccCCCCCC--CChHHH-HHHHH--HcCCCeEEEecCCCC-
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIYG-LSITGLRFFTVYGPWGRP--DMAYFS-FTRNI--LQGKPITVYRGKNHV- 305 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g-i~~~~vrp~~v~G~~~~~--~~~~~~-~~~~~--~~~~~~~~~~~~~~~- 305 (421)
++..++.+.| +++|.+++++.+++| ++++++||++||||+... ....+. ++..+ ..+.++.++ +++
T Consensus 145 ~~~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~ 217 (364)
T 2v6g_A 145 LPRLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFT---GCKA 217 (364)
T ss_dssp SCCCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCC---SCHH
T ss_pred ccCCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecC---CCcc
Confidence 6653346678 458888888887677 999999999999997653 222333 34444 357766544 455
Q ss_pred --cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccc--eecCC-----------
Q 043169 306 --DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKN--VIEMP----------- 370 (421)
Q Consensus 306 --~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~--~~~~~----------- 370 (421)
....+++|++|+|++++.+++.+ ...+++||+++++++|+.|+++.+.+.+|.+.... ..|.+
T Consensus 218 ~~~~~~~~~~v~Dva~a~~~~~~~~--~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~ 295 (364)
T 2v6g_A 218 AWDGYSDCSDADLIAEHHIWAAVDP--YAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPV 295 (364)
T ss_dssp HHHSCBCCEEHHHHHHHHHHHHHCG--GGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHH
T ss_pred cccccCCCCcHHHHHHHHHHHHhCC--CCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHH
Confidence 45578889999999999999876 23578999999999999999999999999865432 22211
Q ss_pred ----------CCC---CC-----------Cc-ccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHH
Q 043169 371 ----------GNG---DV-----------PF-THANISSAQKEFGYRPTTDLQTGLKKFVRWYLSY 411 (421)
Q Consensus 371 ----------~~~---~~-----------~~-~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~ 411 (421)
... .. .. ..+|++|+++ |||+|.++++|+|+++++||+++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~ 360 (364)
T 2v6g_A 296 WEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAY 360 (364)
T ss_dssp HHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHc
Confidence 011 00 22 4789999987 99999999999999999999875
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=313.10 Aligned_cols=308 Identities=15% Similarity=0.198 Sum_probs=215.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+||||||+||||++|+++|+++|++|++++|+.+........... ....++.++.+|++|.+++.++++++ |+|
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~--D~V 84 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLEL--QELGDLKIFRADLTDELSFEAPIAGC--DFV 84 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHH--GGGSCEEEEECCTTTSSSSHHHHTTC--SEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhc--CCCCcEEEEecCCCChHHHHHHHcCC--CEE
Confidence 68999999999999999999999999999999976543322111111 12357889999999999999999876 999
Q ss_pred EEcccccCchhhccCC-chhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc-ccCCC-C--CCCCCCCCCCC-------C
Q 043169 170 MHLAAQAGVRYAMQNP-HSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS-VYGLN-E--NVPFSEADRTD-------Q 237 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~-v~g~~-~--~~~~~e~~~~~-------~ 237 (421)
||+||.... ...++ ..++++|+.|+.+++++|++.+..+|||++||.+ +|+.. . ..+++|+.+.. .
T Consensus 85 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 162 (338)
T 2rh8_A 85 FHVATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAK 162 (338)
T ss_dssp EEESSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------
T ss_pred EEeCCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccC
Confidence 999997532 22334 3489999999999999999886234999999987 44321 1 13566654321 1
Q ss_pred -CCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCh-HHHHHHHHHcCCCeEEEecCC--CCcceeeccc
Q 043169 238 -PASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMA-YFSFTRNILQGKPITVYRGKN--HVDLARDFTY 313 (421)
Q Consensus 238 -~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~ 313 (421)
+...|+.||.++|.++.++.+++|++++++||++||||+...... ....+.....++........+ .+...++|+|
T Consensus 163 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 242 (338)
T 2rh8_A 163 PPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAH 242 (338)
T ss_dssp CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEEE
T ss_pred CccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCcccEEE
Confidence 123699999999999999987789999999999999997643221 111111223443321100000 0112348999
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCC-ccccceecCCCCCCCCcccCChHHHHHHcCCC
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKV-KAKKNVIEMPGNGDVPFTHANISSAQKEFGYR 392 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~ 392 (421)
++|+|++++.+++.+ ..++.|++++ ..+++.|+++.+.+.++. +.+....+ .... ....+|++|+ ++|||+
T Consensus 243 v~Dva~a~~~~~~~~---~~~~~~~~~~-~~~s~~e~~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~d~~k~-~~lG~~ 314 (338)
T 2rh8_A 243 VEDVCRAHIFVAEKE---SASGRYICCA-ANTSVPELAKFLSKRYPQYKVPTDFGD--FPPK-SKLIISSEKL-VKEGFS 314 (338)
T ss_dssp HHHHHHHHHHHHHCT---TCCEEEEECS-EEECHHHHHHHHHHHCTTSCCCCCCTT--SCSS-CSCCCCCHHH-HHHTCC
T ss_pred HHHHHHHHHHHHcCC---CcCCcEEEec-CCCCHHHHHHHHHHhCCCCCCCCCCCC--CCcC-cceeechHHH-HHhCCC
Confidence 999999999999765 2245788876 469999999999998763 22111111 1111 2267899999 679999
Q ss_pred cCCCHHHHHHHHHHHHHHH
Q 043169 393 PTTDLQTGLKKFVRWYLSY 411 (421)
Q Consensus 393 p~~~l~e~l~~~~~~~~~~ 411 (421)
|+++++|+|+++++||++.
T Consensus 315 p~~~l~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 315 FKYGIEEIYDESVEYFKAK 333 (338)
T ss_dssp CSCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999865
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=304.63 Aligned_cols=304 Identities=15% Similarity=0.211 Sum_probs=212.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC-CCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN-FNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
||+||||||+||||++++++|+++|++|++++| +.+...... ..........++.++.+|++|.+++.++++++ |+
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d~ 77 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVS-FLTNLPGASEKLHFFNADLSNPDSFAAAIEGC--VG 77 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCH-HHHTSTTHHHHEEECCCCTTCGGGGHHHHTTC--SE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHH-HHHhhhccCCceEEEecCCCCHHHHHHHHcCC--CE
Confidence 578999999999999999999999999999998 443211111 11000000135788999999999999999877 99
Q ss_pred EEEcccccCchhhccCC-chhhhhhHHHHHHHHHHHHhc-CCCCeEEEEcccccc-CCCC-CCCCCCCCCCC-------C
Q 043169 169 VMHLAAQAGVRYAMQNP-HSYVHSNIAGLVTLLEACKSA-NPQPSIVWASSSSVY-GLNE-NVPFSEADRTD-------Q 237 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~-~~~~~~N~~g~~~l~~~~~~~-~~~~riV~~SS~~v~-g~~~-~~~~~e~~~~~-------~ 237 (421)
|||+|+.. .....++ ..++++|+.|+.+++++|++. ++ ++||++||.+++ +... ..+++|+++.. .
T Consensus 78 vih~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~-~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 154 (322)
T 2p4h_X 78 IFHTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKTV-KRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVK 154 (322)
T ss_dssp EEECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSC-CEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHC
T ss_pred EEEcCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEeccHHHcccCCCCCeecCCccccchhhhcccC
Confidence 99999753 2223333 458999999999999999987 54 499999998744 3221 23455554321 1
Q ss_pred CCC-hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCh-HHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 238 PAS-LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMA-YFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 238 ~~~-~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
|.. .|+.||.++|.++.++.+++|++++++||++||||....... ....+.....+....+ +. ..++|+|++
T Consensus 155 p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~----~~--~~~~~i~v~ 228 (322)
T 2p4h_X 155 PFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQI----GV--TRFHMVHVD 228 (322)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGC----CE--EEEEEEEHH
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccC----cC--CCcCEEEHH
Confidence 222 699999999999999988789999999999999997543221 1111112234443322 11 334899999
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCC-ccccceecCCCCCCCCcccCChHHHHHHcCCCcC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKV-KAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPT 394 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~ 394 (421)
|+|++++.+++.+ ...| .|| ++++++|+.|+++.+.+.++. +.+... ............+|++|+ ++|||+|+
T Consensus 229 Dva~a~~~~~~~~--~~~g-~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~k~-~~lG~~p~ 302 (322)
T 2p4h_X 229 DVARAHIYLLENS--VPGG-RYN-CSPFIVPIEEMSQLLSAKYPEYQILTVD-ELKEIKGARLPDLNTKKL-VDAGFDFK 302 (322)
T ss_dssp HHHHHHHHHHHSC--CCCE-EEE-CCCEEEEHHHHHHHHHHHCTTSCCCCTT-TTTTCCCEECCEECCHHH-HHTTCCCC
T ss_pred HHHHHHHHHhhCc--CCCC-CEE-EcCCCCCHHHHHHHHHHhCCCCCCCCCc-cccCCCCCcceecccHHH-HHhCCccC
Confidence 9999999999765 2334 588 556789999999999988753 111100 000001113456899999 67999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 043169 395 TDLQTGLKKFVRWYLSY 411 (421)
Q Consensus 395 ~~l~e~l~~~~~~~~~~ 411 (421)
++++|+|+++++||++.
T Consensus 303 ~~~~~~l~~~~~~~~~~ 319 (322)
T 2p4h_X 303 YTIEDMFDDAIQCCKEK 319 (322)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999999875
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=310.19 Aligned_cols=305 Identities=17% Similarity=0.241 Sum_probs=216.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc--CCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLN--NHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.++|+||||||+||||++++++|+++|++|++++|+.+..... .. ..... ..+++++.+|++|.+++.++++++
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~--~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 78 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKV-KH--LLDLPKAETHLTLWKADLADEGSFDEAIKGC- 78 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHH-HH--HHTSTTHHHHEEEEECCTTSTTTTHHHHTTC-
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHH-HH--HHhcccCCCeEEEEEcCCCCHHHHHHHHcCC-
Confidence 4678999999999999999999999999999999865421111 10 00111 135889999999999999999876
Q ss_pred CcEEEEcccccCchhhccCCc-hhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc-ccCCCC-CCCCCCCCCCC------
Q 043169 166 FTHVMHLAAQAGVRYAMQNPH-SYVHSNIAGLVTLLEACKSANPQPSIVWASSSS-VYGLNE-NVPFSEADRTD------ 236 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~-~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~-v~g~~~-~~~~~e~~~~~------ 236 (421)
|+|||+|+... ....++. ..+++|+.|+.+++++|++.+..+|||++||.+ +|+... ..+++|+.+..
T Consensus 79 -d~Vih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~ 155 (337)
T 2c29_D 79 -TGVFHVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRA 155 (337)
T ss_dssp -SEEEECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHH
T ss_pred -CEEEEeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcc
Confidence 99999998652 1223333 588999999999999999887234999999987 454322 23455554221
Q ss_pred --CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHH--HHHcCCCeEEEecCCCCcceeecc
Q 043169 237 --QPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTR--NILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 237 --~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.+.+.|+.||.++|.++.++.+++|++++++||++||||....... ..+.. ....+.... +. .. ....|+
T Consensus 156 ~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~-~~~~~~~~~~~g~~~~-~~---~~-~~~~~i 229 (337)
T 2c29_D 156 KKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMP-PSLITALSPITGNEAH-YS---II-RQGQFV 229 (337)
T ss_dssp HCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCC-HHHHHHTHHHHTCGGG-HH---HH-TEEEEE
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCC-chHHHHHHHHcCCCcc-cc---cc-CCCCEE
Confidence 1345799999999999999887789999999999999997654321 11111 113333221 10 11 234599
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCC-ccccceecCCCCCCCCcccCChHHHHHHcCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKV-KAKKNVIEMPGNGDVPFTHANISSAQKEFGY 391 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~ 391 (421)
|++|+|++++.+++.+ . .++.|++++ ..+++.|+++.+.+.++. +.+....+ .........+|++|+ ++|||
T Consensus 230 ~v~Dva~a~~~~~~~~--~-~~~~~~~~~-~~~s~~e~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~d~~k~-~~lG~ 302 (337)
T 2c29_D 230 HLDDLCNAHIYLFENP--K-AEGRYICSS-HDCIILDLAKMLREKYPEYNIPTEFKG--VDENLKSVCFSSKKL-TDLGF 302 (337)
T ss_dssp EHHHHHHHHHHHHHCT--T-CCEEEEECC-EEEEHHHHHHHHHHHCTTSCCCSCCTT--CCTTCCCCEECCHHH-HHHTC
T ss_pred EHHHHHHHHHHHhcCc--c-cCceEEEeC-CCCCHHHHHHHHHHHCCCccCCCCCCc--ccCCCccccccHHHH-HHcCC
Confidence 9999999999999765 2 245787665 568999999999998753 22111111 112334556899999 78999
Q ss_pred CcCCCHHHHHHHHHHHHHHHh
Q 043169 392 RPTTDLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 392 ~p~~~l~e~l~~~~~~~~~~~ 412 (421)
+|+++++|+|+++++||++..
T Consensus 303 ~p~~~l~e~l~~~~~~~~~~~ 323 (337)
T 2c29_D 303 EFKYSLEDMFTGAVDTCRAKG 323 (337)
T ss_dssp CCCCCHHHHHHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHHHHHHcC
Confidence 999999999999999998763
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=298.69 Aligned_cols=269 Identities=16% Similarity=0.175 Sum_probs=215.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+|||||| ||||++|+++|+++|++|++++|+.+.. ......+++++.+|++|.+ +++ +|+|
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~---------~~~~~~~~~~~~~D~~d~~-----~~~--~d~v 67 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQM---------EAIRASGAEPLLWPGEEPS-----LDG--VTHL 67 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGH---------HHHHHTTEEEEESSSSCCC-----CTT--CCEE
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhh---------hhHhhCCCeEEEecccccc-----cCC--CCEE
Confidence 479999998 9999999999999999999999954311 1112257999999999944 444 4999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHh--cCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKS--ANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~--~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
||+||..... ...+.++++++++ .+++ +||++||.++||.....+++|+++. .|.+.|+.+|+
T Consensus 68 i~~a~~~~~~-------------~~~~~~l~~a~~~~~~~~~-~~v~~Ss~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~ 132 (286)
T 3ius_A 68 LISTAPDSGG-------------DPVLAALGDQIAARAAQFR-WVGYLSTTAVYGDHDGAWVDETTPL-TPTAARGRWRV 132 (286)
T ss_dssp EECCCCBTTB-------------CHHHHHHHHHHHHTGGGCS-EEEEEEEGGGGCCCTTCEECTTSCC-CCCSHHHHHHH
T ss_pred EECCCccccc-------------cHHHHHHHHHHHhhcCCce-EEEEeecceecCCCCCCCcCCCCCC-CCCCHHHHHHH
Confidence 9999975321 1135789999988 5654 9999999999998877788888765 67899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhc
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 327 (421)
++|.+++.+ .|++++++||+++|||+... +..+..+....+. .+++.++|+|++|+|++++.+++.
T Consensus 133 ~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~-------~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~a~~~~~~~ 198 (286)
T 3ius_A 133 MAEQQWQAV---PNLPLHVFRLAGIYGPGRGP-------FSKLGKGGIRRII----KPGQVFSRIHVEDIAQVLAASMAR 198 (286)
T ss_dssp HHHHHHHHS---TTCCEEEEEECEEEBTTBSS-------STTSSSSCCCEEE----CTTCCBCEEEHHHHHHHHHHHHHS
T ss_pred HHHHHHHhh---cCCCEEEEeccceECCCchH-------HHHHhcCCccccC----CCCcccceEEHHHHHHHHHHHHhC
Confidence 999999987 59999999999999997543 2234567777665 235789999999999999999998
Q ss_pred CCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceec-CCCCCC------CCcccCChHHHHHHcCCCcCC-CHHH
Q 043169 328 SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE-MPGNGD------VPFTHANISSAQKEFGYRPTT-DLQT 399 (421)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~-~~~~~~------~~~~~~d~~ka~~~lG~~p~~-~l~e 399 (421)
+. .+++||+++++++|+.|+++.+.+.+|.+.+..... ...... .....+|++|+++.|||+|++ +++|
T Consensus 199 ~~---~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~~e 275 (286)
T 3ius_A 199 PD---PGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYRV 275 (286)
T ss_dssp CC---TTCEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSSHHH
T ss_pred CC---CCCEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCCHHH
Confidence 72 578999999999999999999999999876543221 111111 144568999999999999999 7999
Q ss_pred HHHHHHHH
Q 043169 400 GLKKFVRW 407 (421)
Q Consensus 400 ~l~~~~~~ 407 (421)
+|+++++.
T Consensus 276 ~l~~~~~~ 283 (286)
T 3ius_A 276 GLEALQAD 283 (286)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999864
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=281.64 Aligned_cols=268 Identities=17% Similarity=0.163 Sum_probs=218.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+|+||||+||||++++++|+ +|++|++++|+.+.. .+ +.+|++|.+++.+++++.++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~--------------~~---~~~Dl~~~~~~~~~~~~~~~d~vi 62 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ--------------GG---YKLDLTDFPRLEDFIIKKRPDVII 62 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT--------------TC---EECCTTSHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC--------------CC---ceeccCCHHHHHHHHHhcCCCEEE
Confidence 579999999999999999999 589999999965310 12 789999999999999986679999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
||||......+..++...+++|+.++.+++++|++.+. +||++||..+|+.... +++|++++ .+.+.|+.+|.++|
T Consensus 63 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~iv~~SS~~~~~~~~~-~~~e~~~~-~~~~~Y~~sK~~~e 138 (273)
T 2ggs_A 63 NAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS--YIVHISTDYVFDGEKG-NYKEEDIP-NPINYYGLSKLLGE 138 (273)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEEGGGSCSSSC-SBCTTSCC-CCSSHHHHHHHHHH
T ss_pred ECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEecceeEcCCCC-CcCCCCCC-CCCCHHHHHHHHHH
Confidence 99998765555678889999999999999999998874 9999999999976543 67777655 56789999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCC
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
.+++. ++++++||+.|||+ ......++..+..+.++.++ + + .++++|++|+|++++.+++.+.
T Consensus 139 ~~~~~------~~~~~iR~~~v~G~----~~~~~~~~~~~~~~~~~~~~---~--~-~~~~~~~~dva~~i~~~~~~~~- 201 (273)
T 2ggs_A 139 TFALQ------DDSLIIRTSGIFRN----KGFPIYVYKTLKEGKTVFAF---K--G-YYSPISARKLASAILELLELRK- 201 (273)
T ss_dssp HHHCC------TTCEEEEECCCBSS----SSHHHHHHHHHHTTCCEEEE---S--C-EECCCBHHHHHHHHHHHHHHTC-
T ss_pred HHHhC------CCeEEEeccccccc----cHHHHHHHHHHHcCCCEEee---c--C-CCCceEHHHHHHHHHHHHhcCc-
Confidence 99876 57899999999983 33455666777788877665 2 2 7899999999999999998762
Q ss_pred CCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecC---CCCCCCCcccCChHHHHHHcCCCc-CCCHHHHH
Q 043169 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM---PGNGDVPFTHANISSAQKEFGYRP-TTDLQTGL 401 (421)
Q Consensus 331 ~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~---~~~~~~~~~~~d~~ka~~~lG~~p-~~~l~e~l 401 (421)
+++||+++ +.+|+.|+++.+.+.+|.+.+...... ..........+|++|+++.|||+| .++++|++
T Consensus 202 ---~g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 202 ---TGIIHVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp ---CEEEECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred ---CCeEEECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence 45999999 999999999999999998765432110 111223456789999999999999 57898865
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=294.45 Aligned_cols=306 Identities=18% Similarity=0.232 Sum_probs=226.8
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHH----------HhhcCCceEEEEcccCCHH
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARK----------ALLNNHGVFVIEGDINDAK 155 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~v~~~~~Dl~d~~ 155 (421)
....+|+||||||+||||++++++|+++|++|++++|+.+..+. ...... ......++.++.+|++|.+
T Consensus 65 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 143 (427)
T 4f6c_A 65 SHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIA-WYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD 143 (427)
T ss_dssp CCCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHH-HHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHH-HHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence 34568899999999999999999999999999999997652111 111111 1112368999999999988
Q ss_pred HHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCC-----CCCCCCC
Q 043169 156 LLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGL-----NENVPFS 230 (421)
Q Consensus 156 ~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~-----~~~~~~~ 230 (421)
++. .+. ++|+||||||.... ..++...+++|+.|+.+++++|++ +. ++||++||..+ |. ....+++
T Consensus 144 ~l~-~~~--~~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~~l~~aa~~-~~-~~~v~~SS~~~-G~~~~~~~~~~~~~ 214 (427)
T 4f6c_A 144 DVV-LPE--NMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HH-ARLIYVSTISV-GTYFDIDTEDVTFS 214 (427)
T ss_dssp CCC-CSS--CCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TT-CEEEEEEEGGG-GSEECSSCSCCEEC
T ss_pred cCC-CcC--CCCEEEECCcccCC---CCCHHHHHHHHHHHHHHHHHHHHh-cC-CcEEEECchHh-CCCccCCCCCcccc
Confidence 777 333 56999999998642 356788999999999999999998 54 49999999988 43 2345677
Q ss_pred CCCCC--CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-------ChHHHHHHHHHcCCCeEEEec
Q 043169 231 EADRT--DQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD-------MAYFSFTRNILQGKPITVYRG 301 (421)
Q Consensus 231 e~~~~--~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 301 (421)
|+++. ..+.+.|+.+|+++|.+++++++ .|++++++|||+||||..... ..+..+++.+..+..+..
T Consensus 215 E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 290 (427)
T 4f6c_A 215 EADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV--- 290 (427)
T ss_dssp TTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH---
T ss_pred ccccccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC---
Confidence 77652 24779999999999999999865 699999999999999976543 346677888887776554
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCC-------CCC-
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP-------GNG- 373 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~-------~~~- 373 (421)
+.++..++|++++|+|++++.++..+ . .+++||+++++++++.|+++.+.+ ++. ..++.+ ..+
T Consensus 291 -~~~~~~~~~v~v~DvA~ai~~~~~~~--~-~g~~~~l~~~~~~s~~el~~~i~~-~g~----~~~~~~~~~~~l~~~~~ 361 (427)
T 4f6c_A 291 -SMAEMPVDFSFVDTTARQIVALAQVN--T-PQIIYHVLSPNKMPVKSLLECVKR-KEI----ELVSDESFNEILQKQDM 361 (427)
T ss_dssp -HHHTCEECCEEHHHHHHHHHHHTTSC--C-CCSEEEESCSCCEEHHHHHHHHHS-SCC----EEECHHHHHHHHHHTTC
T ss_pred -ccccceEEEeeHHHHHHHHHHHHcCC--C-CCCEEEecCCCCCcHHHHHHHHHH-cCC----cccCHHHHHHHHHhcCc
Confidence 24678999999999999999999877 2 789999999999999999999998 551 111111 000
Q ss_pred -----------CCCcccCChHHHH---HHcCCCcCCCHHHHHHHHHHHHHHHhCC
Q 043169 374 -----------DVPFTHANISSAQ---KEFGYRPTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 374 -----------~~~~~~~d~~ka~---~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
......+|+++.. +.+||.+...-++.++++++|+++.+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~~~ 416 (427)
T 4f6c_A 362 YETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK 416 (427)
T ss_dssp HHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHC-
T ss_pred hhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1112345666655 5679987755577999999999999864
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=277.16 Aligned_cols=275 Identities=18% Similarity=0.138 Sum_probs=207.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+|||||||||||++|+++|+++||+|++++|+.... ++...+...+.++++ |.||
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~----------------------~~~~~~~~~~~l~~~--d~vi 56 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG----------------------RITWDELAASGLPSC--DAAV 56 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT----------------------EEEHHHHHHHCCCSC--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC----------------------eeecchhhHhhccCC--CEEE
Confidence 7899999999999999999999999999999954311 111112233445544 9999
Q ss_pred EcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCCC-CeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 171 HLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANPQ-PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 171 ~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
|+||..... ++......+.++|+.+|.+|++++++.+.+ .++|++||.++||.....+.+|+++. .+...|+..
T Consensus 57 hla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~-~~~~~~~~~ 135 (298)
T 4b4o_A 57 NLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPG-GDFDFFSNL 135 (298)
T ss_dssp ECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCC-SCSSHHHHH
T ss_pred EeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCc-cccchhHHH
Confidence 999853221 122334567899999999999999887754 25899999999999888888888765 667788888
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhh
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 325 (421)
|...|.... ....+++++++||+.||||+.. .+..+......+....+ +++++.++|||++|+|++++.++
T Consensus 136 ~~~~e~~~~--~~~~~~~~~~~r~~~v~g~~~~---~~~~~~~~~~~~~~~~~----g~g~~~~~~ihv~Dva~a~~~~~ 206 (298)
T 4b4o_A 136 VTKWEAAAR--LPGDSTRQVVVRSGVVLGRGGG---AMGHMLLPFRLGLGGPI----GSGHQFFPWIHIGDLAGILTHAL 206 (298)
T ss_dssp HHHHHHHHC--CSSSSSEEEEEEECEEECTTSH---HHHHHHHHHHTTCCCCB----TTSCSBCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hhccCCceeeeeeeeEEcCCCC---chhHHHHHHhcCCccee----cccCceeecCcHHHHHHHHHHHH
Confidence 877775432 2335899999999999999643 45556655666655444 68899999999999999999999
Q ss_pred hcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCC------CC------CCcccCChHHHHHHcCCCc
Q 043169 326 DTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN------GD------VPFTHANISSAQKEFGYRP 393 (421)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~------~~------~~~~~~d~~ka~~~lG~~p 393 (421)
+++ ...++||+++++++|++|+++.+.+.+|++.. .|.|.. +. .....+++.|++ ++||++
T Consensus 207 ~~~---~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp~~---~pvP~~~~~~~~g~~~~~~~l~~~rv~~~kl~-~~Gf~f 279 (298)
T 4b4o_A 207 EAN---HVHGVLNGVAPSSATNAEFAQTFGAALGRRAF---IPLPSAVVQAVFGRQRAIMLLEGQKVIPRRTL-ATGYQY 279 (298)
T ss_dssp HCT---TCCEEEEESCSCCCBHHHHHHHHHHHHTCCCC---CCBCHHHHHHHHCHHHHHHHHCCCCBCCHHHH-HTTCCC
T ss_pred hCC---CCCCeEEEECCCccCHHHHHHHHHHHhCcCCc---ccCCHHHHHHHhcchhHHHhhCCCEEcHHHHH-HCCCCC
Confidence 887 23569999999999999999999999997642 233311 00 011235667874 699999
Q ss_pred CC-CHHHHHHHHHH
Q 043169 394 TT-DLQTGLKKFVR 406 (421)
Q Consensus 394 ~~-~l~e~l~~~~~ 406 (421)
++ +++|+|++.++
T Consensus 280 ~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 280 SFPELGAALKEIAE 293 (298)
T ss_dssp SCCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 98 69999999987
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=275.54 Aligned_cols=240 Identities=20% Similarity=0.248 Sum_probs=199.9
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHC-CC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKR-GD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
..+++|+||||||+|+||++++++|+++ |+ +|++++|+..+ ...........++.++.+|++|.+++.+++++
T Consensus 17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~-----~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 91 (344)
T 2gn4_A 17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELK-----QSEMAMEFNDPRMRFFIGDVRDLERLNYALEG 91 (344)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHH-----HHHHHHHHCCTTEEEEECCTTCHHHHHHHTTT
T ss_pred HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhh-----HHHHHHHhcCCCEEEEECCCCCHHHHHHHHhc
Confidence 3467899999999999999999999999 97 99999994321 11111222346899999999999999999986
Q ss_pred cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHH
Q 043169 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
+ |+|||+||....+....++...+++|+.|+.+++++|.+.+++ +||++||..++ .|.+.|+
T Consensus 92 ~--D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~SS~~~~---------------~p~~~Y~ 153 (344)
T 2gn4_A 92 V--DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALSTDKAA---------------NPINLYG 153 (344)
T ss_dssp C--SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGS---------------SCCSHHH
T ss_pred C--CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCCccC---------------CCccHHH
Confidence 5 9999999987665556677889999999999999999999865 99999998764 3468999
Q ss_pred HHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCC-CeEEEecCCCCcceeecccHHHHHH
Q 043169 244 ATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGK-PITVYRGKNHVDLARDFTYIDDIVK 319 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~ 319 (421)
.||+++|.+++.++++ .|++++++|||+||||+. ..++.+...+..++ ++.+. +++..++|+|++|+|+
T Consensus 154 ~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~---~~i~~~~~~~~~g~~~~~i~----~~~~~r~~i~v~D~a~ 226 (344)
T 2gn4_A 154 ATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG---SVVPFFKKLVQNKASEIPIT----DIRMTRFWITLDEGVS 226 (344)
T ss_dssp HHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT---SHHHHHHHHHHHTCCCEEES----CTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC---CHHHHHHHHHHcCCCceEEe----CCCeEEeeEEHHHHHH
Confidence 9999999999998764 589999999999999864 36677888888888 77764 5678899999999999
Q ss_pred HHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhC
Q 043169 320 GCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLK 359 (421)
Q Consensus 320 a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g 359 (421)
+++.+++.+ ..+++|+++++ ++++.|+++.+.+.++
T Consensus 227 ~v~~~l~~~---~~g~~~~~~~~-~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 227 FVLKSLKRM---HGGEIFVPKIP-SMKMTDLAKALAPNTP 262 (344)
T ss_dssp HHHHHHHHC---CSSCEEEECCC-EEEHHHHHHHHCTTCC
T ss_pred HHHHHHhhc---cCCCEEecCCC-cEEHHHHHHHHHHhCC
Confidence 999999876 35789998775 6999999999986543
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=297.17 Aligned_cols=282 Identities=16% Similarity=0.116 Sum_probs=206.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+||||||+||||++|++.|+++|++|++++|+.+.. ..+.+|+.+. +.+++++ +|+|
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~-----------------~~v~~d~~~~--~~~~l~~--~D~V 205 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP-----------------GKRFWDPLNP--ASDLLDG--ADVL 205 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT-----------------TCEECCTTSC--CTTTTTT--CSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc-----------------cceeecccch--hHHhcCC--CCEE
Confidence 78999999999999999999999999999999976532 1256777643 3445554 4999
Q ss_pred EEcccccCc-hhhccCCchhhhhhHHHHHHHHHH-HHhcCCCCeEEEEccccccC-CCCCCCCCCCCCCCCCCChHHHHH
Q 043169 170 MHLAAQAGV-RYAMQNPHSYVHSNIAGLVTLLEA-CKSANPQPSIVWASSSSVYG-LNENVPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 170 i~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~l~~~-~~~~~~~~riV~~SS~~v~g-~~~~~~~~e~~~~~~~~~~Y~~sK 246 (421)
||+||.... .....++..++++|+.|+.+|+++ +++.++ ++||++||.++|| .....+++|+++. +.+.|+.+|
T Consensus 206 ih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~-~r~V~~SS~~vyg~~~~~~~~~E~~~~--~~~~y~~~~ 282 (516)
T 3oh8_A 206 VHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQC-TTMISASAVGFYGHDRGDEILTEESES--GDDFLAEVC 282 (516)
T ss_dssp EECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSC-CEEEEEEEGGGGCSEEEEEEECTTSCC--CSSHHHHHH
T ss_pred EECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEeCcceEecCCCCCCccCCCCCC--CcChHHHHH
Confidence 999997543 223445667899999999999999 555555 4999999999998 4445567777654 678899999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
..+|.++..+ ...|++++++|||+||||+. ..+..+...+..+....+ +++++.++|+|++|+|++++.+++
T Consensus 283 ~~~E~~~~~~-~~~gi~~~ilRp~~v~Gp~~---~~~~~~~~~~~~g~~~~~----g~g~~~~~~i~v~Dva~ai~~~l~ 354 (516)
T 3oh8_A 283 RDWEHATAPA-SDAGKRVAFIRTGVALSGRG---GMLPLLKTLFSTGLGGKF----GDGTSWFSWIAIDDLTDIYYRAIV 354 (516)
T ss_dssp HHHHHTTHHH-HHTTCEEEEEEECEEEBTTB---SHHHHHHHTTC---CCCC----TTSCCEECEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCCEEEEEeeEEECCCC---ChHHHHHHHHHhCCCccc----CCCCceEceEeHHHHHHHHHHHHh
Confidence 9999876654 44699999999999999974 345555554444443322 678899999999999999999998
Q ss_pred cCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCC----CCCC-------CcccCChHHHHHHcCCCcCC
Q 043169 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG----NGDV-------PFTHANISSAQKEFGYRPTT 395 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~----~~~~-------~~~~~d~~ka~~~lG~~p~~ 395 (421)
++. .+++||+++++++|+.|+++.+.+.+|.+... ..|... .+.. ....++++|++ .|||+|++
T Consensus 355 ~~~---~~g~~ni~~~~~~s~~el~~~i~~~~g~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~-~lG~~~~~ 429 (516)
T 3oh8_A 355 DAQ---ISGPINAVAPNPVSNADMTKILATSMHRPAFI-QIPSLGPKILLGSQGAEELALASQRTAPAALE-NLSHTFRY 429 (516)
T ss_dssp CTT---CCEEEEESCSCCEEHHHHHHHTTC----------------------CCGGGGGGCEEEECCHHHH-HTTCCCSC
T ss_pred Ccc---cCCcEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCHHHHHHHhCCchhHHHhhcCCeechHHHH-HCCCCCCC
Confidence 762 35799999999999999999999999976521 122110 1111 12235778887 69999998
Q ss_pred C-HHHHHHHHHHHH
Q 043169 396 D-LQTGLKKFVRWY 408 (421)
Q Consensus 396 ~-l~e~l~~~~~~~ 408 (421)
+ ++++|++++++.
T Consensus 430 ~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 430 TDIGAAIAHELGYE 443 (516)
T ss_dssp SSHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhCcc
Confidence 7 999999998754
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=284.23 Aligned_cols=267 Identities=18% Similarity=0.194 Sum_probs=206.9
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHC---CCcEEEEeCCCCCCChhHHHHHH-------------HhhcCCceEEEEc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKR---GDGVVGLDNFNNYYDPSLKKARK-------------ALLNNHGVFVIEG 149 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~ 149 (421)
...++|+||||||+||||++|+++|+++ |++|++++|+.+... ....... ......++.++.+
T Consensus 69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 147 (478)
T 4dqv_A 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDED-ARRRLEKTFDSGDPELLRHFKELAADRLEVVAG 147 (478)
T ss_dssp CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHH-HHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHH-HHHHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence 3467999999999999999999999999 999999999765221 1111110 1112368999999
Q ss_pred ccC------CHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCC
Q 043169 150 DIN------DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGL 223 (421)
Q Consensus 150 Dl~------d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~ 223 (421)
|++ |.+.+.++++++ |+||||||.... .++...+++|+.|+.+++++|++.+++ +||++||.++|+.
T Consensus 148 Dl~~~~~gld~~~~~~~~~~~--D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~~V~iSS~~v~~~ 220 (478)
T 4dqv_A 148 DKSEPDLGLDQPMWRRLAETV--DLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLK-PFTYVSTADVGAA 220 (478)
T ss_dssp CTTSGGGGCCHHHHHHHHHHC--CEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCC-CEEEEEEGGGGTT
T ss_pred ECCCcccCCCHHHHHHHHcCC--CEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEEeehhhcCc
Confidence 998 778899999876 999999998653 567789999999999999999998865 9999999999998
Q ss_pred CCCCCCCCCCCCCCCC-----------ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC-----CCCChHHHHH
Q 043169 224 NENVPFSEADRTDQPA-----------SLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWG-----RPDMAYFSFT 287 (421)
Q Consensus 224 ~~~~~~~e~~~~~~~~-----------~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~-----~~~~~~~~~~ 287 (421)
....++.|++.. .+. +.|+.||+++|.+++++.++.|++++++|||+|||+.. .....+..++
T Consensus 221 ~~~~~~~E~~~~-~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~ 299 (478)
T 4dqv_A 221 IEPSAFTEDADI-RVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMV 299 (478)
T ss_dssp SCTTTCCSSSCH-HHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHH
T ss_pred cCCCCcCCcccc-cccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHH
Confidence 777778777643 222 44999999999999999988899999999999999854 2233455555
Q ss_pred HHHHcCCCeE--EEecCCC---CcceeecccHHHHHHHHHHhhhcCC--CCCCceEEEecCCCc--cCHHHHHHHHHHHh
Q 043169 288 RNILQGKPIT--VYRGKNH---VDLARDFTYIDDIVKGCLGSLDTSA--GPAPYRIFNLGNTSP--VTVPKLVNILERHL 358 (421)
Q Consensus 288 ~~~~~~~~~~--~~~~~~~---~~~~~~~i~v~Dva~a~~~~l~~~~--~~~~~~~~~i~~~~~--~t~~el~~~l~~~~ 358 (421)
......+..+ ++...++ ++..++|+|++|+|++++.++.... ....+++||++++++ +++.|+++.+.+.
T Consensus 300 ~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~- 378 (478)
T 4dqv_A 300 LSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA- 378 (478)
T ss_dssp HHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT-
T ss_pred HHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc-
Confidence 5544433222 1111111 2688999999999999999987621 135689999999988 9999999999996
Q ss_pred CCcc
Q 043169 359 KVKA 362 (421)
Q Consensus 359 g~~~ 362 (421)
|.+.
T Consensus 379 g~~~ 382 (478)
T 4dqv_A 379 GYPI 382 (478)
T ss_dssp TCSC
T ss_pred CCCc
Confidence 6654
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=267.85 Aligned_cols=261 Identities=19% Similarity=0.161 Sum_probs=202.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR--GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|+||||||+||||++++++|+++ |++|++++|+.+... .. ...+++++.+|++|.+++.++++++ |+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----~l-----~~~~~~~~~~D~~d~~~l~~~~~~~--d~ 69 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS----TL-----ADQGVEVRHGDYNQPESLQKAFAGV--SK 69 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH----HH-----HHTTCEEEECCTTCHHHHHHHTTTC--SE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh----HH-----hhcCCeEEEeccCCHHHHHHHHhcC--CE
Confidence 57999999999999999999999 999999999654321 11 1247889999999999999999876 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
|||+||... .. ++|+.++.+++++|++.+++ +||++||.++|. ....|+.+|.+
T Consensus 70 vi~~a~~~~--------~~--~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~---------------~~~~y~~~K~~ 123 (287)
T 2jl1_A 70 LLFISGPHY--------DN--TLLIVQHANVVKAARDAGVK-HIAYTGYAFAEE---------------SIIPLAHVHLA 123 (287)
T ss_dssp EEECCCCCS--------CH--HHHHHHHHHHHHHHHHTTCS-EEEEEEETTGGG---------------CCSTHHHHHHH
T ss_pred EEEcCCCCc--------Cc--hHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCC---------------CCCchHHHHHH
Confidence 999998521 11 67999999999999998865 999999998762 11379999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
+|.++++ .|++++++||+.++|+... .++........... ..++..++|+|++|+|++++.+++.+
T Consensus 124 ~E~~~~~----~~~~~~ilrp~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~i~~~Dva~~~~~~~~~~ 189 (287)
T 2jl1_A 124 TEYAIRT----TNIPYTFLRNALYTDFFVN------EGLRASTESGAIVT----NAGSGIVNSVTRNELALAAATVLTEE 189 (287)
T ss_dssp HHHHHHH----TTCCEEEEEECCBHHHHSS------GGGHHHHHHTEEEE----SCTTCCBCCBCHHHHHHHHHHHHTSS
T ss_pred HHHHHHH----cCCCeEEEECCEeccccch------hhHHHHhhCCceec----cCCCCccCccCHHHHHHHHHHHhcCC
Confidence 9998864 6999999999998886311 11222332222322 34567889999999999999999875
Q ss_pred CCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCC----------CCCC-------------CCcccCChHHH
Q 043169 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP----------GNGD-------------VPFTHANISSA 385 (421)
Q Consensus 329 ~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~----------~~~~-------------~~~~~~d~~ka 385 (421)
...+++||+++++++|+.|+++.+.+.+|.+.+....|.. .+.. ......|++++
T Consensus 190 --~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (287)
T 2jl1_A 190 --GHENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSDDL 267 (287)
T ss_dssp --SCTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCCSHH
T ss_pred --CCCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCchHH
Confidence 3467899999998999999999999999987654333311 0000 01245678899
Q ss_pred HHHcCCCcCCCHHHHHHHHHH
Q 043169 386 QKEFGYRPTTDLQTGLKKFVR 406 (421)
Q Consensus 386 ~~~lG~~p~~~l~e~l~~~~~ 406 (421)
++.|| |.++++|+|+++++
T Consensus 268 ~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 268 QKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp HHHHS--SCCCHHHHHHHHHT
T ss_pred HHHhC--CCCCHHHHHHHHhc
Confidence 99999 66799999999875
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=290.55 Aligned_cols=304 Identities=18% Similarity=0.229 Sum_probs=226.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHH----------HhhcCCceEEEEcccCCHHHH
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARK----------ALLNNHGVFVIEGDINDAKLL 157 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~v~~~~~Dl~d~~~~ 157 (421)
..+|+|||||||||||++|+++|.++|++|++++|+.+..+.. ..... ......++.++.+|++|++.+
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 226 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAW-YKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 226 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHH-HHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHH-HHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence 3568999999999999999999999999999999976522111 11100 112347899999999997777
Q ss_pred HHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCC-----CCCCCCCCC
Q 043169 158 AKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGL-----NENVPFSEA 232 (421)
Q Consensus 158 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~-----~~~~~~~e~ 232 (421)
. .+. ++|+||||||... ...++...+++|+.|+.+++++|++ +. ++|||+||.++ |. ....+++|+
T Consensus 227 ~-~~~--~~D~Vih~Aa~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~-~~-~~~v~iSS~~v-G~~~~~~~~~~~~~E~ 297 (508)
T 4f6l_B 227 V-LPE--NMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQ-HH-ARLIYVSTISV-GTYFDIDTEDVTFSEA 297 (508)
T ss_dssp C-CSS--CCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHT-TT-CEEEEEEESCT-TSEECTTCSCCEECTT
T ss_pred C-Ccc--CCCEEEECCceec---CCCCHHHHhhhHHHHHHHHHHHHHh-CC-CcEEEeCChhh-ccCCccCCcCcccccc
Confidence 6 333 5699999999764 2356778899999999999999998 43 49999999998 43 234567777
Q ss_pred CCC--CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-------ChHHHHHHHHHcCCCeEEEecCC
Q 043169 233 DRT--DQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD-------MAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 233 ~~~--~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
++. ..+.+.|+.+|+++|.+++++++ .|++++++|||+||||..... ..+..+++.+..+..+.. +
T Consensus 298 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~ 372 (508)
T 4f6l_B 298 DVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV----S 372 (508)
T ss_dssp CSCSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET----T
T ss_pred cccccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC----C
Confidence 652 23678999999999999999865 699999999999999976542 235677777777665443 3
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCC-------CC----
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP-------GN---- 372 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~-------~~---- 372 (421)
+++..++|+|++|+|++++.++..+. .+++||+++++++++.|+++.+.+.. .+ ..+.+ ..
T Consensus 373 ~g~~~~~~v~v~DvA~ai~~~~~~~~---~~~~~nl~~~~~~s~~el~~~i~~~~-~~----~~~~~~w~~~l~~~~~~~ 444 (508)
T 4f6l_B 373 MAEMPVDFSFVDTTARQIVALAQVNT---PQIIYHVLSPNKMPVKSLLECVKRKE-IE----LVSDESFNEILQKQDMYE 444 (508)
T ss_dssp GGGSEEECEEHHHHHHHHHHHTTBCC---SCSEEEESCSCEEEHHHHHHHHHSSC-CE----EECHHHHHHHHHTTCCHH
T ss_pred ccCceEEEEcHHHHHHHHHHHHhCCC---CCCEEEeCCCCCCCHHHHHHHHHHcC-Cc----ccCHHHHHHHHHhcCCcc
Confidence 46889999999999999999998772 68999999999999999999999754 11 11100 00
Q ss_pred --------CCCCcccCChHHHH---HHcCCCcCCCHHHHHHHHHHHHHHHhCC
Q 043169 373 --------GDVPFTHANISSAQ---KEFGYRPTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 373 --------~~~~~~~~d~~ka~---~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
.......+|+++.. +.+|+.+...-++.++++++|+++.+++
T Consensus 445 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~~~ 497 (508)
T 4f6l_B 445 TIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK 497 (508)
T ss_dssp HHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHC-
T ss_pred chhcccccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 01112345665544 5689988766688999999999999874
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=262.86 Aligned_cols=261 Identities=16% Similarity=0.111 Sum_probs=197.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKR--GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+||||||+|+||++++++|+++ |++|++++|+.+.... . ...++.++.+|++|.+++.++++++ |+|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~----~-----~~~~~~~~~~D~~d~~~~~~~~~~~--d~v 69 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA----L-----AAQGITVRQADYGDEAALTSALQGV--EKL 69 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHH----H-----HHTTCEEEECCTTCHHHHHHHTTTC--SEE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhh----h-----hcCCCeEEEcCCCCHHHHHHHHhCC--CEE
Confidence 4899999999999999999999 9999999997653211 1 1246889999999999999999877 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||+||... ..|+.++.+++++|++.+++ +||++||.++|. ....|+.+|.++
T Consensus 70 i~~a~~~~------------~~~~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~---------------~~~~y~~sK~~~ 121 (286)
T 2zcu_A 70 LLISSSEV------------GQRAPQHRNVINAAKAAGVK-FIAYTSLLHADT---------------SPLGLADEHIET 121 (286)
T ss_dssp EECC--------------------CHHHHHHHHHHHHTCC-EEEEEEETTTTT---------------CCSTTHHHHHHH
T ss_pred EEeCCCCc------------hHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCC---------------CcchhHHHHHHH
Confidence 99998521 14788999999999998865 999999998761 124799999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
|.++++ .|++++++||+.++++.. .++..+..++.+. + ++++..++++|++|+|++++.+++.+
T Consensus 122 e~~~~~----~~~~~~ilrp~~~~~~~~-------~~~~~~~~~~~~~-~---~~~~~~~~~i~~~Dva~~~~~~~~~~- 185 (286)
T 2zcu_A 122 EKMLAD----SGIVYTLLRNGWYSENYL-------ASAPAALEHGVFI-G---AAGDGKIASATRADYAAAAARVISEA- 185 (286)
T ss_dssp HHHHHH----HCSEEEEEEECCBHHHHH-------TTHHHHHHHTEEE-E---SCTTCCBCCBCHHHHHHHHHHHHHSS-
T ss_pred HHHHHH----cCCCeEEEeChHHhhhhH-------HHhHHhhcCCcee-c---cCCCCccccccHHHHHHHHHHHhcCC-
Confidence 998865 599999999988776421 1222333333343 2 35678899999999999999999876
Q ss_pred CCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCC-------CCCC----------------CcccCChHHHH
Q 043169 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG-------NGDV----------------PFTHANISSAQ 386 (421)
Q Consensus 330 ~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~-------~~~~----------------~~~~~d~~ka~ 386 (421)
...+++||+++++.+|+.|+++.+.+.+|.+.+....|... .+.. .....|+++++
T Consensus 186 -~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (286)
T 2zcu_A 186 -GHEGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTLS 264 (286)
T ss_dssp -SCTTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCCHHH
T ss_pred -CCCCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCchHHH
Confidence 34678999999989999999999999999876543333110 0100 12456788999
Q ss_pred HHcCCCcCCCHHHHHHHHHHHHH
Q 043169 387 KEFGYRPTTDLQTGLKKFVRWYL 409 (421)
Q Consensus 387 ~~lG~~p~~~l~e~l~~~~~~~~ 409 (421)
+.||| |.++++|+|+++++||.
T Consensus 265 ~~lg~-~~~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 265 KLIGH-PTTTLAESVSHLFNVNN 286 (286)
T ss_dssp HHHTS-CCCCHHHHHHGGGC---
T ss_pred HHhCc-CCCCHHHHHHHHHhhcC
Confidence 99997 45599999999999874
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=259.97 Aligned_cols=235 Identities=19% Similarity=0.240 Sum_probs=193.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+|+||++++++|+++|++|++++|+..... ..++.++.+|++|.+++.++++++ |+||
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~--d~vi 68 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA------------EAHEEIVACDLADAQAVHDLVKDC--DGII 68 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC------------CTTEEECCCCTTCHHHHHHHHTTC--SEEE
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc------------CCCccEEEccCCCHHHHHHHHcCC--CEEE
Confidence 68999999999999999999999999999999764321 136789999999999999999875 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCC-CCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLN-ENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~-~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||||... ..++...+++|+.++.++++++++.+.+ +||++||..+|+.. ...+++|+++. .+.+.|+.+|+++
T Consensus 69 ~~a~~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~~~~~~~~E~~~~-~~~~~Y~~sK~~~ 142 (267)
T 3ay3_A 69 HLGGVSV----ERPWNDILQANIIGAYNLYEAARNLGKP-RIVFASSNHTIGYYPRTTRIDTEVPR-RPDSLYGLSKCFG 142 (267)
T ss_dssp ECCSCCS----CCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEEEGGGSTTSBTTSCBCTTSCC-CCCSHHHHHHHHH
T ss_pred ECCcCCC----CCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCHHHhCCCCCCCCCCCCCCC-CCCChHHHHHHHH
Confidence 9999752 3455788999999999999999988864 99999999999864 34677887665 6788999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
|.+++.+.+++|++++++||+++|+.. .+++..++|+|++|+|++++.+++.+
T Consensus 143 e~~~~~~~~~~gi~~~~lrp~~v~~~~--------------------------~~~~~~~~~~~~~dva~~~~~~~~~~- 195 (267)
T 3ay3_A 143 EDLASLYYHKFDIETLNIRIGSCFPKP--------------------------KDARMMATWLSVDDFMRLMKRAFVAP- 195 (267)
T ss_dssp HHHHHHHHHTTCCCEEEEEECBCSSSC--------------------------CSHHHHHHBCCHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHcCCCEEEEeceeecCCC--------------------------CCCCeeeccccHHHHHHHHHHHHhCC-
Confidence 999999888789999999999998421 02234568999999999999999876
Q ss_pred CCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHHHHH
Q 043169 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVR 406 (421)
Q Consensus 330 ~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~ 406 (421)
....++|++.++. .....|..++ +.|||+|+++++++++++.+
T Consensus 196 -~~~~~~~~~~~~~--------------------------------~~~~~d~~~~-~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 196 -KLGCTVVYGASAN--------------------------------TESWWDNDKS-AFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp -CCCEEEEEECCSC--------------------------------SSCCBCCGGG-GGGCCCCCCCGGGGHHHHHH
T ss_pred -CCCceeEecCCCc--------------------------------cccccCHHHH-HHcCCCCCCCHHHHHHHHHh
Confidence 3345777775432 1234667777 88999999999999988864
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=274.80 Aligned_cols=250 Identities=21% Similarity=0.374 Sum_probs=207.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
|+||||||+||||++|+++|+++|+ +|+.++|+ .|.+++.++++++ |+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~----------------------------~d~~~l~~~~~~~--d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ----------------------------TKEEELESALLKA--DFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT----------------------------CCHHHHHHHHHHC--SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC----------------------------CCHHHHHHHhccC--CEE
Confidence 6899999999999999999999998 88887762 7888999999876 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||+||.... .++...+++|+.++.+++++|++.+.+++||++||..+|+ .+.|+.+|+++
T Consensus 51 ih~a~~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~----------------~~~Y~~sK~~~ 110 (369)
T 3st7_A 51 VHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ----------------DNPYGESKLQG 110 (369)
T ss_dssp EECCCSBCT----TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS----------------CSHHHHHHHHH
T ss_pred EECCcCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC----------------CCCchHHHHHH
Confidence 999997653 4677889999999999999999998766999999999974 57899999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCC--CChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhc
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRP--DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 327 (421)
|.++++++++.|++++++||+++|||+..+ +..+..++..+..+.++.+ ++++..++++|++|+|++++.+++.
T Consensus 111 E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~v~Dva~~~~~~l~~ 186 (369)
T 3st7_A 111 EQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQV----NDRNVELTLNYVDDIVAEIKRAIEG 186 (369)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCC----SCTTCEEEEEEHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEe----cCCCeEEEEEEHHHHHHHHHHHHhC
Confidence 999999999899999999999999997765 3577888888999988776 3678899999999999999999987
Q ss_pred CCCCCC-ceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHH
Q 043169 328 SAGPAP-YRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKK 403 (421)
Q Consensus 328 ~~~~~~-~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~ 403 (421)
+ ... +++||+++++.+|+.|+++.+.+.+|.+......+.+ ...........+||.|..+++++++.
T Consensus 187 ~--~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~-------~~~~~~l~~~~l~~~p~~~~~~~l~~ 254 (369)
T 3st7_A 187 T--PTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLD-------NLFEKDLYSTYLSYLPSTDFSYPLLM 254 (369)
T ss_dssp C--CCEETTEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCCCTT-------SHHHHHHHHHHHHTSCTTCSCCCCCE
T ss_pred C--cccCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccCCCC-------CHHHHHHHHHHhcccCCcceeechhh
Confidence 7 222 7899999999999999999999999876443221111 01111334445899998777665543
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=253.03 Aligned_cols=224 Identities=13% Similarity=0.128 Sum_probs=176.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+||||||+|+||++++++|+++|++|++++|+.+..... ..++.++.+|++|.+++.++++++ |+|
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~~~--d~v 71 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE----------NEHLKVKKADVSSLDEVCEVCKGA--DAV 71 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC----------CTTEEEECCCTTCHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc----------cCceEEEEecCCCHHHHHHHhcCC--CEE
Confidence 57999999999999999999999999999999975433221 267999999999999999999976 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||+||... .+ ...+++|+.++.++++++++.+++ +||++||.++|+.....+ .++.+ ..|.+.|+.+|.++
T Consensus 72 i~~a~~~~-----~~-~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~~~~~~~-~~~~~-~~p~~~Y~~sK~~~ 142 (227)
T 3dhn_A 72 ISAFNPGW-----NN-PDIYDETIKVYLTIIDGVKKAGVN-RFLMVGGAGSLFIAPGLR-LMDSG-EVPENILPGVKALG 142 (227)
T ss_dssp EECCCC------------CCSHHHHHHHHHHHHHHHTTCS-EEEEECCSTTSEEETTEE-GGGTT-CSCGGGHHHHHHHH
T ss_pred EEeCcCCC-----CC-hhHHHHHHHHHHHHHHHHHHhCCC-EEEEeCChhhccCCCCCc-cccCC-cchHHHHHHHHHHH
Confidence 99998642 12 237899999999999999999865 999999998775433222 23333 35678999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
|.+++.++++.|++++++||+++|||+...... ..+....+. .++. ++|+|++|+|++++.+++++
T Consensus 143 e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~--------~~~~~~~~~----~~~~-~~~i~~~Dva~ai~~~l~~~- 208 (227)
T 3dhn_A 143 EFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRY--------RLGKDDMIV----DIVG-NSHISVEDYAAAMIDELEHP- 208 (227)
T ss_dssp HHHHHTGGGCCSSEEEEEECCSEEESCCCCCCC--------EEESSBCCC----CTTS-CCEEEHHHHHHHHHHHHHSC-
T ss_pred HHHHHHHhhccCccEEEEeCCcccCCCccccce--------eecCCCccc----CCCC-CcEEeHHHHHHHHHHHHhCc-
Confidence 999999987789999999999999997654321 122222222 1122 89999999999999999988
Q ss_pred CCCCceEEEecCCCccCHHH
Q 043169 330 GPAPYRIFNLGNTSPVTVPK 349 (421)
Q Consensus 330 ~~~~~~~~~i~~~~~~t~~e 349 (421)
...+++|+++++++.++++
T Consensus 209 -~~~g~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 209 -KHHQERFTIGYLEHHHHHH 227 (227)
T ss_dssp -CCCSEEEEEECCSCCC---
T ss_pred -cccCcEEEEEeehhcccCC
Confidence 5689999999999988763
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=250.99 Aligned_cols=213 Identities=20% Similarity=0.193 Sum_probs=179.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|+||||||+||||++++++|+++|++|++++|+..... ..++.++.+|++|.+++.++++++ |+
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~--D~ 67 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA------------GPNEECVQCDLADANAVNAMVAGC--DG 67 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC------------CTTEEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc------------CCCCEEEEcCCCCHHHHHHHHcCC--CE
Confidence 4689999999999999999999999999999999765432 367999999999999999999966 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCC-CCCCCCCCCCCCCCCChHHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLN-ENVPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~-~~~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
||||||.. ...+++..+++|+.|+.++++++++.+.+ +||++||..+|+.. ...+++|+.+. .+.+.|+.||.
T Consensus 68 vi~~Ag~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~g~~~~~~~~~e~~~~-~~~~~Y~~sK~ 141 (267)
T 3rft_A 68 IVHLGGIS----VEKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFASSNHTIGYYPQTERLGPDVPA-RPDGLYGVSKC 141 (267)
T ss_dssp EEECCSCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGTTSBTTSCBCTTSCC-CCCSHHHHHHH
T ss_pred EEECCCCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcchHHhCCCCCCCCCCCCCCC-CCCChHHHHHH
Confidence 99999984 34566789999999999999999998864 99999999999743 34566666544 67899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhc
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 327 (421)
++|.+++.+++++|+++++|||+.|+|+. .+++..++|++++|+++++..+++.
T Consensus 142 ~~e~~~~~~a~~~g~~~~~vr~~~v~~~~--------------------------~~~~~~~~~~~~~d~a~~~~~~~~~ 195 (267)
T 3rft_A 142 FGENLARMYFDKFGQETALVRIGSCTPEP--------------------------NNYRMLSTWFSHDDFVSLIEAVFRA 195 (267)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECBCSSSC--------------------------CSTTHHHHBCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCeEEEEEeecccCCC--------------------------CCCCceeeEEcHHHHHHHHHHHHhC
Confidence 99999999998899999999999999872 2345667899999999999999987
Q ss_pred CCCCCCceEEEecCCCccCHHH
Q 043169 328 SAGPAPYRIFNLGNTSPVTVPK 349 (421)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~t~~e 349 (421)
+ .....++++.++++.++.+
T Consensus 196 ~--~~~~~~~~~~s~~~~~~~~ 215 (267)
T 3rft_A 196 P--VLGCPVVWGASANDAGWWD 215 (267)
T ss_dssp S--CCCSCEEEECCCCTTCCBC
T ss_pred C--CCCceEEEEeCCCCCCccc
Confidence 7 3455678887766554433
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3e-31 Score=255.65 Aligned_cols=289 Identities=14% Similarity=0.130 Sum_probs=202.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+.+|+||||||||+||++|++.|+++|++|++++|+.+....... ........++.++.+|++|.+++.+++++.++|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~--~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 85 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAK--IFKALEDKGAIIVYGLINEQEAMEKILKEHEID 85 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH--HHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHH--HHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCC
Confidence 346799999999999999999999999999999997643211111 112233468999999999999999999955569
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK 246 (421)
+|||+||. .|+.++.+++++|++.+ ++ +||+ | +||. +.+|+.+. .+...|+.+|
T Consensus 86 ~Vi~~a~~---------------~n~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~----~~~e~~~~-~p~~~y~~sK 140 (346)
T 3i6i_A 86 IVVSTVGG---------------ESILDQIALVKAMKAVGTIK-RFLP-S---EFGH----DVNRADPV-EPGLNMYREK 140 (346)
T ss_dssp EEEECCCG---------------GGGGGHHHHHHHHHHHCCCS-EEEC-S---CCSS----CTTTCCCC-TTHHHHHHHH
T ss_pred EEEECCch---------------hhHHHHHHHHHHHHHcCCce-EEee-c---ccCC----CCCccCcC-CCcchHHHHH
Confidence 99999986 27888999999999998 65 8885 4 3442 23333332 5668899999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
..+|.++++ .|++++++|||.++|...... . ........++.+.++ ++++..++|+|++|+|++++.++.
T Consensus 141 ~~~e~~l~~----~g~~~tivrpg~~~g~~~~~~-~--~~~~~~~~~~~~~~~---g~g~~~~~~i~~~Dva~~~~~~l~ 210 (346)
T 3i6i_A 141 RRVRQLVEE----SGIPFTYICCNSIASWPYYNN-I--HPSEVLPPTDFFQIY---GDGNVKAYFVAGTDIGKFTMKTVD 210 (346)
T ss_dssp HHHHHHHHH----TTCCBEEEECCEESSCCCSCC--------CCCCSSCEEEE---TTSCCCEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHH----cCCCEEEEEecccccccCccc-c--ccccccCCCceEEEc---cCCCceEEecCHHHHHHHHHHHHh
Confidence 999988876 699999999999999643221 1 111112245556665 678899999999999999999998
Q ss_pred cCCCCCCceEEEecC-CCccCHHHHHHHHHHHhCCccccceecCC-------CC-----------------CCCCccc--
Q 043169 327 TSAGPAPYRIFNLGN-TSPVTVPKLVNILERHLKVKAKKNVIEMP-------GN-----------------GDVPFTH-- 379 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~-~~~~t~~el~~~l~~~~g~~~~~~~~~~~-------~~-----------------~~~~~~~-- 379 (421)
.+ ...+++|++.+ ++.+|+.|+++.+++.+|.+.+....+.. .. +....+.
T Consensus 211 ~~--~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~ 288 (346)
T 3i6i_A 211 DV--RTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSID 288 (346)
T ss_dssp CG--GGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTTCTTTSSCCC
T ss_pred Cc--cccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhccCCCcccccC
Confidence 87 34578899985 47899999999999999998765544421 00 0000000
Q ss_pred -CChHHHHHHc-CCCcCCCHHHHHHHHHHHHHHHhCCCC
Q 043169 380 -ANISSAQKEF-GYRPTTDLQTGLKKFVRWYLSYYGYNR 416 (421)
Q Consensus 380 -~d~~ka~~~l-G~~p~~~l~e~l~~~~~~~~~~~~~~~ 416 (421)
.+..++.+.+ +++|+ +++|.|+++++|++++++.++
T Consensus 289 ~~~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~~~~~~ 326 (346)
T 3i6i_A 289 GPEDVEVTTLYPEDSFR-TVEECFGEYIVKMEEKQPTAD 326 (346)
T ss_dssp STTEEEHHHHSTTCCCC-CHHHHHHHHHCC---------
T ss_pred CCCcccHHHhCCCCCcC-cHHHHHHHHHHHhhccccccc
Confidence 1112233333 45554 899999999999999876543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=242.02 Aligned_cols=209 Identities=13% Similarity=0.122 Sum_probs=171.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-HHHHHHHhhccCCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-AKLLAKLFDAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~d~v 169 (421)
|+|+||||+|+||++++++|+++|++|++++|+.+..... .+++++.+|++| .+++.++++++ |+|
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-----------~~~~~~~~D~~d~~~~~~~~~~~~--d~v 67 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-----------NNVKAVHFDVDWTPEEMAKQLHGM--DAI 67 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-----------TTEEEEECCTTSCHHHHHTTTTTC--SEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-----------CCceEEEecccCCHHHHHHHHcCC--CEE
Confidence 5899999999999999999999999999999965433221 579999999999 99999999976 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
|||||... ...+++|+.++.+++++|++.+.+ +||++||.++++.. ++.| .+..+...|+.+|.++
T Consensus 68 i~~ag~~~--------~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~---~~~e--~~~~~~~~Y~~sK~~~ 133 (219)
T 3dqp_A 68 INVSGSGG--------KSLLKVDLYGAVKLMQAAEKAEVK-RFILLSTIFSLQPE---KWIG--AGFDALKDYYIAKHFA 133 (219)
T ss_dssp EECCCCTT--------SSCCCCCCHHHHHHHHHHHHTTCC-EEEEECCTTTTCGG---GCCS--HHHHHTHHHHHHHHHH
T ss_pred EECCcCCC--------CCcEeEeHHHHHHHHHHHHHhCCC-EEEEECcccccCCC---cccc--cccccccHHHHHHHHH
Confidence 99999753 337889999999999999998865 99999998876532 2333 1224578899999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
|.+++ +..|++++++|||.+||+..... +. . ++..+++++++|+|++++.+++++
T Consensus 134 e~~~~---~~~~i~~~ilrp~~v~g~~~~~~---------------~~-~-----~~~~~~~i~~~Dva~~i~~~l~~~- 188 (219)
T 3dqp_A 134 DLYLT---KETNLDYTIIQPGALTEEEATGL---------------ID-I-----NDEVSASNTIGDVADTIKELVMTD- 188 (219)
T ss_dssp HHHHH---HSCCCEEEEEEECSEECSCCCSE---------------EE-E-----SSSCCCCEEHHHHHHHHHHHHTCG-
T ss_pred HHHHH---hccCCcEEEEeCceEecCCCCCc---------------cc-c-----CCCcCCcccHHHHHHHHHHHHhCc-
Confidence 99886 45799999999999999844321 11 1 256789999999999999999886
Q ss_pred CCCCceEEEecCCCccCHHHHHHH
Q 043169 330 GPAPYRIFNLGNTSPVTVPKLVNI 353 (421)
Q Consensus 330 ~~~~~~~~~i~~~~~~t~~el~~~ 353 (421)
...+++||+++++ .++.|+.+.
T Consensus 189 -~~~g~~~~i~~g~-~~~~e~~~~ 210 (219)
T 3dqp_A 189 -HSIGKVISMHNGK-TAIKEALES 210 (219)
T ss_dssp -GGTTEEEEEEECS-EEHHHHHHT
T ss_pred -cccCcEEEeCCCC-ccHHHHHHH
Confidence 3558999998875 899988764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=242.11 Aligned_cols=219 Identities=17% Similarity=0.166 Sum_probs=170.7
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCce-EEEEcccCCHHHHHHHhhc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGV-FVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~~~~~~~~ 163 (421)
...+++|+|+||||+|+||++++++|+++|++|++++|+.+.. . .....++ +++.+|++ +++.+++.+
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~----~-----~~~~~~~~~~~~~Dl~--~~~~~~~~~ 84 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQG----P-----ELRERGASDIVVANLE--EDFSHAFAS 84 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGH----H-----HHHHTTCSEEEECCTT--SCCGGGGTT
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHH----H-----HHHhCCCceEEEcccH--HHHHHHHcC
Confidence 3447899999999999999999999999999999999965321 1 1122478 99999999 667777775
Q ss_pred cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHH
Q 043169 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
+ |+||||||... ..++...+++|+.++.++++++++.+.+ +||++||.+.+.. +..+ .+...|+
T Consensus 85 ~--D~vi~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~-------~~~~--~~~~~Y~ 148 (236)
T 3e8x_A 85 I--DAVVFAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSSVGTVDP-------DQGP--MNMRHYL 148 (236)
T ss_dssp C--SEEEECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECCTTCSCG-------GGSC--GGGHHHH
T ss_pred C--CEEEECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCC-EEEEEecCCCCCC-------CCCh--hhhhhHH
Confidence 5 99999999754 2567789999999999999999998865 9999999655421 1111 3567899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHH
Q 043169 244 ATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLG 323 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 323 (421)
.+|.++|.+++ ..|++++++|||.++|+.... .+... ......+++++++|+|++++.
T Consensus 149 ~sK~~~e~~~~----~~gi~~~~lrpg~v~~~~~~~---------------~~~~~---~~~~~~~~~i~~~Dva~~~~~ 206 (236)
T 3e8x_A 149 VAKRLADDELK----RSSLDYTIVRPGPLSNEESTG---------------KVTVS---PHFSEITRSITRHDVAKVIAE 206 (236)
T ss_dssp HHHHHHHHHHH----HSSSEEEEEEECSEECSCCCS---------------EEEEE---SSCSCCCCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HCCCCEEEEeCCcccCCCCCC---------------eEEec---cCCCcccCcEeHHHHHHHHHH
Confidence 99999999886 479999999999999984321 12222 234457899999999999999
Q ss_pred hhhcCCCCCCceEEEecCCCccCHHHHHHHHH
Q 043169 324 SLDTSAGPAPYRIFNLGNTSPVTVPKLVNILE 355 (421)
Q Consensus 324 ~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~ 355 (421)
+++.+ ...+++|+++++ ++++.|+++.+.
T Consensus 207 ~~~~~--~~~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 207 LVDQQ--HTIGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp HTTCG--GGTTEEEEEEEC-SEEHHHHHHTC-
T ss_pred HhcCc--cccCCeEEEeCC-CcCHHHHHHHhc
Confidence 99877 356899999887 599999998764
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=240.81 Aligned_cols=260 Identities=15% Similarity=0.155 Sum_probs=188.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
|+||||||||+||++++++|+++ |++|++++|+.++... ....+++++.+|++|++++.++++++ |+|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~---------~~~~~v~~~~~D~~d~~~l~~~~~~~--d~v 69 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPD---------DWRGKVSVRQLDYFNQESMVEAFKGM--DTV 69 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCG---------GGBTTBEEEECCTTCHHHHHHHTTTC--SEE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHH---------hhhCCCEEEEcCCCCHHHHHHHHhCC--CEE
Confidence 57999999999999999999998 9999999996653322 23468999999999999999999977 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||+||..... ..|+.++.+++++|++.+++ +||++||.+.. . ..+ ..+...+..+
T Consensus 70 i~~a~~~~~~----------~~~~~~~~~l~~aa~~~gv~-~iv~~Ss~~~~---~----------~~~-~~~~~~~~~~ 124 (289)
T 3e48_A 70 VFIPSIIHPS----------FKRIPEVENLVYAAKQSGVA-HIIFIGYYADQ---H----------NNP-FHMSPYFGYA 124 (289)
T ss_dssp EECCCCCCSH----------HHHHHHHHHHHHHHHHTTCC-EEEEEEESCCS---T----------TCC-STTHHHHHHH
T ss_pred EEeCCCCccc----------hhhHHHHHHHHHHHHHcCCC-EEEEEcccCCC---C----------CCC-CccchhHHHH
Confidence 9999875321 35899999999999999965 99999995421 0 011 1122222233
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
|..+ ++.|++++++|||.++|+. ..++..+..+.... + +.++..++|+|++|+|++++.++..+.
T Consensus 125 e~~~----~~~g~~~~ilrp~~~~~~~-------~~~~~~~~~~~~~~-~---~~g~~~~~~i~~~Dva~~~~~~l~~~~ 189 (289)
T 3e48_A 125 SRLL----STSGIDYTYVRMAMYMDPL-------KPYLPELMNMHKLI-Y---PAGDGRINYITRNDIARGVIAIIKNPD 189 (289)
T ss_dssp HHHH----HHHCCEEEEEEECEESTTH-------HHHHHHHHHHTEEC-C---CCTTCEEEEECHHHHHHHHHHHHHCGG
T ss_pred HHHH----HHcCCCEEEEecccccccc-------HHHHHHHHHCCCEe-c---CCCCceeeeEEHHHHHHHHHHHHcCCC
Confidence 3333 3469999999999999972 22333344333222 2 356889999999999999999999872
Q ss_pred CCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecC-------CCCCCCC-------------cccCChHHHHHHc
Q 043169 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM-------PGNGDVP-------------FTHANISSAQKEF 389 (421)
Q Consensus 330 ~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~-------~~~~~~~-------------~~~~d~~ka~~~l 389 (421)
..+++||++ ++.+|+.|+++.+.+.+|.+......+. ..+.... ....+++..++.+
T Consensus 190 --~~g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 266 (289)
T 3e48_A 190 --TWGKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLDQESNDFKQLV 266 (289)
T ss_dssp --GTTCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTCCCCSHHHHHH
T ss_pred --cCCceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCccccCchHHHHh
Confidence 348899999 9999999999999999998765433321 0101100 1123556677889
Q ss_pred CCCcCCCHHHHHHHHH
Q 043169 390 GYRPTTDLQTGLKKFV 405 (421)
Q Consensus 390 G~~p~~~l~e~l~~~~ 405 (421)
|+.|+ +++|-+++.-
T Consensus 267 G~~p~-~~~~~~~~~~ 281 (289)
T 3e48_A 267 NDQPQ-TLQSFLQENI 281 (289)
T ss_dssp SSCCC-CHHHHHHC--
T ss_pred CCCCC-CHHHHHHHHH
Confidence 99888 8887765543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=243.76 Aligned_cols=252 Identities=17% Similarity=0.121 Sum_probs=187.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+||||++++++|+++|++|++++|+.+..+...+..........++.++.+|++|.++++++++.+
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999654322222221111111127899999999999999998876
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+.. ..++||++||...+.
T Consensus 88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 156 (281)
T 3svt_A 88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN----------- 156 (281)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS-----------
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC-----------
Confidence 78999999997322 22344556789999999999999875321 124999999988763
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+..+...|+.||.+.+.+++.++.++ ||++++|+||.|+++..........+...+....+ ...
T Consensus 157 -~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p------------~~r 223 (281)
T 3svt_A 157 -THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTP------------LPR 223 (281)
T ss_dssp -CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCS------------SSS
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCC------------CCC
Confidence 22456889999999999999999874 69999999999998732210000122222222222 224
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC-HHHHHHHHHHHhCCcc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT-VPKLVNILERHLKVKA 362 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t-~~el~~~l~~~~g~~~ 362 (421)
+.+++|+|++++.++........|++|++.+|..++ ..|+.+.+.+.++.+.
T Consensus 224 ~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~ 276 (281)
T 3svt_A 224 QGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA 276 (281)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred CCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence 678999999999999876556789999999988776 7889999999988754
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=234.17 Aligned_cols=245 Identities=15% Similarity=0.150 Sum_probs=183.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||++++++|+++|++|++++|+.+. ............++.++.+|++|.++++++++.+
T Consensus 13 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 88 (278)
T 2bgk_A 13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDH----GQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIA 88 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhH----HHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999985321 1111111112237899999999999999998754
Q ss_pred ---CCcEEEEcccccCc------hhhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV------RYAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+. +. ++||++||...|...
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~------- 160 (278)
T 2bgk_A 89 KHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKK-GSIVFTASISSFTAG------- 160 (278)
T ss_dssp HHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTC-EEEEEECCGGGTCCC-------
T ss_pred HcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-CeEEEEeeccccCCC-------
Confidence 68999999997642 1122445678999999999999988653 33 499999999887421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCh-HHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMA-YFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
..+...|+.||.+.+.+++.++.+ +|+++++|+||.++|+....... .......+....+ ..
T Consensus 161 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~----------~~ 226 (278)
T 2bgk_A 161 ----EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA----------NL 226 (278)
T ss_dssp ----TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC----------SS
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhccc----------cc
Confidence 114578999999999999999877 58999999999999986432110 1122222222111 11
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHH
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERH 357 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~ 357 (421)
...+++++|+|++++.++........|++|++.++..+++.|+++.+.+.
T Consensus 227 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 227 KGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHG 276 (278)
T ss_dssp CSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSC
T ss_pred ccccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhh
Confidence 23588999999999999976544567899999999999999999887654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=227.73 Aligned_cols=218 Identities=11% Similarity=0.047 Sum_probs=160.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+|+||++++++|+++|++|++++|+.+ ........+++++.+|++|.++ +++.++ |+||
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~---------~~~~~~~~~~~~~~~D~~d~~~--~~~~~~--d~vi 67 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQ---------KAADRLGATVATLVKEPLVLTE--ADLDSV--DAVV 67 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH---------HHHHHTCTTSEEEECCGGGCCH--HHHTTC--SEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccc---------ccccccCCCceEEecccccccH--hhcccC--CEEE
Confidence 57999999999999999999999999999999432 2222334689999999999887 667766 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC---CCCCCCCCCCCCCChHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN---VPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~---~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
||||... ......+|+.++.++++++++.+ + +||++||.+.+..... .+.+++..+ .+...|+.+|.
T Consensus 68 ~~ag~~~-------~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~sK~ 137 (224)
T 3h2s_A 68 DALSVPW-------GSGRGYLHLDFATHLVSLLRNSD-T-LAVFILGSASLAMPGADHPMILDFPESA-ASQPWYDGALY 137 (224)
T ss_dssp ECCCCCT-------TSSCTHHHHHHHHHHHHTCTTCC-C-EEEEECCGGGSBCTTCSSCGGGGCCGGG-GGSTTHHHHHH
T ss_pred ECCccCC-------CcchhhHHHHHHHHHHHHHHHcC-C-cEEEEecceeeccCCCCccccccCCCCC-ccchhhHHHHH
Confidence 9999751 11235789999999999999998 4 9999999865543222 123333332 34788999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhc
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~ 327 (421)
++|.+ ..+.++.|++++++|||.+|||+.... . ......+. .+...+++++++|+|++++.++++
T Consensus 138 ~~e~~-~~~~~~~~i~~~ivrp~~v~g~~~~~~-~-------~~~~~~~~------~~~~~~~~i~~~DvA~~~~~~l~~ 202 (224)
T 3h2s_A 138 QYYEY-QFLQMNANVNWIGISPSEAFPSGPATS-Y-------VAGKDTLL------VGEDGQSHITTGNMALAILDQLEH 202 (224)
T ss_dssp HHHHH-HHHTTCTTSCEEEEEECSBCCCCCCCC-E-------EEESSBCC------CCTTSCCBCCHHHHHHHHHHHHHS
T ss_pred HHHHH-HHHHhcCCCcEEEEcCccccCCCcccC-c-------eecccccc------cCCCCCceEeHHHHHHHHHHHhcC
Confidence 99944 555555799999999999999844321 0 00111111 123456899999999999999998
Q ss_pred CCCCCCceEEEecCCCccCHH
Q 043169 328 SAGPAPYRIFNLGNTSPVTVP 348 (421)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~t~~ 348 (421)
+ ...+++|++++.++.++.
T Consensus 203 ~--~~~g~~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 203 P--TAIRDRIVVRDADLEHHH 221 (224)
T ss_dssp C--CCTTSEEEEEECC-----
T ss_pred c--cccCCEEEEecCcchhcc
Confidence 7 567899999987765544
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=236.92 Aligned_cols=237 Identities=14% Similarity=0.093 Sum_probs=174.7
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.++++|++|||||+||||++++++|+++|++|++++|+.+.. +..... ...++.++++|++|+++++++++.+
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERA----RQAAAE--IGPAAYAVQMDVTRQDSIDAAIAATV 77 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHH--HCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHH--hCCCceEEEeeCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999854311 111111 2457899999999999999988865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++.+. +..++||++||...+.
T Consensus 78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 147 (259)
T 4e6p_A 78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR---------- 147 (259)
T ss_dssp HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc----------
Confidence 789999999986432 234456678999999999999987532 2224999999987753
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCC---eEEEecCCCCc
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKP---ITVYRGKNHVD 306 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 306 (421)
+.++...|+.||.+.+.+++.++.++ |+++++|+||.|++|.... ...+......... ...+ .+..
T Consensus 148 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~ 219 (259)
T 4e6p_A 148 --GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDG---VDALFARYENRPRGEKKRLV---GEAV 219 (259)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHH---HHHHHHHHHTCCTTHHHHHH---HHHS
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhh---hhhhhhhhccCChHHHHHHH---hccC
Confidence 22456789999999999999999875 8999999999999984321 1111111111110 0000 1123
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
....+.+++|+|++++.++........|++|++.+|..+|
T Consensus 220 p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 220 PFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp TTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred CCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcChhcC
Confidence 3456899999999999998766556789999999886543
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=230.20 Aligned_cols=233 Identities=20% Similarity=0.177 Sum_probs=174.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR--GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
+++|+|+||||+|+||++++++|+++ |++|++++|+.+ ..... ..++.++.+|++|.+++.++++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~---------~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~- 70 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ---------GKEKI-GGEADVFIGDITDADSINPAFQGI- 70 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH---------HHHHT-TCCTTEEECCTTSHHHHHHHHTTC-
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC---------chhhc-CCCeeEEEecCCCHHHHHHHHcCC-
Confidence 46789999999999999999999999 899999999431 11111 357889999999999999999876
Q ss_pred CcEEEEcccccCchh-------------hccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVRY-------------AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~-------------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
|+||||||...... ..++....+++|+.++.++++++++.+.+ +||++||.+++.... +.
T Consensus 71 -d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~~~~~--~~--- 143 (253)
T 1xq6_A 71 -DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMGGTNPDH--PL--- 143 (253)
T ss_dssp -SEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETTTTCTTC--GG---
T ss_pred -CEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEcCccCCCCCC--cc---
Confidence 99999999754210 11222356799999999999999998865 999999988753111 00
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.+ .....|+.+|.++|.++++ .|++++++|||.+||+....... ..+....++ ....+++
T Consensus 144 -~~-~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~~~--------~~~~~~~~~------~~~~~~~ 203 (253)
T 1xq6_A 144 -NK-LGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVREL--------LVGKDDELL------QTDTKTV 203 (253)
T ss_dssp -GG-GGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSSCE--------EEESTTGGG------GSSCCEE
T ss_pred -cc-ccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchhhh--------hccCCcCCc------CCCCcEE
Confidence 00 1124588899999998764 69999999999999986432110 000000011 1134699
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCC---ccCHHHHHHHHHHHhCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS---PVTVPKLVNILERHLKV 360 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~---~~t~~el~~~l~~~~g~ 360 (421)
|++|+|++++.+++.+ ...+++||+++++ ++++.|+++.+.+.+|+
T Consensus 204 ~~~Dva~~~~~~~~~~--~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 204 PRADVAEVCIQALLFE--EAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp EHHHHHHHHHHHTTCG--GGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHcCc--cccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 9999999999999876 3457899999864 59999999999998875
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-29 Score=229.86 Aligned_cols=226 Identities=17% Similarity=0.078 Sum_probs=175.7
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.++++|++|||||+||||.+++++|+++|++|++++|+.+..+..... . ..++.++.+|++|.++++++++.+
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~----~--~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAAS----V--GRGAVHHVVDLTNEVSVRALIDFTI 80 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHH----H--CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH----h--CCCeEEEECCCCCHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999976543322211 1 467889999999999999998865
Q ss_pred ----CCcEEEEcccccCc------hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV------RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~-------- 151 (271)
T 3tzq_B 81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGG-GAIVNISSATAHA-------- 151 (271)
T ss_dssp HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTS--------
T ss_pred HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEECCHHHcC--------
Confidence 78999999998632 2234455678999999999999988 45553 4999999988753
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
...+...|+.||.+.+.+++.++.+ +||++++|+||.|++|...... ...+...+....+
T Consensus 152 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~------------ 214 (271)
T 3tzq_B 152 ----AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGL-PQPIVDIFATHHL------------ 214 (271)
T ss_dssp ----BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC----CHHHHHHHHTTST------------
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccC-CHHHHHHHHhcCC------------
Confidence 2245678999999999999999988 6899999999999998544221 1223333333322
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..-+.+++|+|++++.++........|+++++.+|.
T Consensus 215 ~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 250 (271)
T 3tzq_B 215 AGRIGEPHEIAELVCFLASDRAAFITGQVIAADSGL 250 (271)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCCc
Confidence 123678999999999999876567789999999873
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=234.30 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=167.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+|+||||+|+||++++++|+++|++|++++|+.+..+..............++.++.+|++|.++++++++.+
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999643221111111000112246889999999999999988854
Q ss_pred ---CCcEEEEcccccCch----h----hccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccc-cCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----Y----AMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSV-YGLNENVP 228 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~----~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v-~g~~~~~~ 228 (421)
++|+||||||..... . +.++++..+++|+.|+.++++++.+. + ++||++||... +.
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~------ 154 (278)
T 1spx_A 83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLH------ 154 (278)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTTSSSS------
T ss_pred HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEeccccccc------
Confidence 679999999985432 1 33445678999999999999987543 4 49999999876 53
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC----hH---HHHHHHHHcCCCeEE
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM----AY---FSFTRNILQGKPITV 298 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~----~~---~~~~~~~~~~~~~~~ 298 (421)
+.++...|+.||.+.+.+++.++.+ +|+++++|+||.|+++...... .. ......+....+
T Consensus 155 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p--- 225 (278)
T 1spx_A 155 ------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVP--- 225 (278)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCT---
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCC---
Confidence 1234578999999999999999876 5899999999999988432110 00 000111211111
Q ss_pred EecCCCCcceeecccHHHHHHHHHHhhhcCCCC-CCceEEEecCCCccCHHHHHHHHHHHh
Q 043169 299 YRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGP-APYRIFNLGNTSPVTVPKLVNILERHL 358 (421)
Q Consensus 299 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~-~~~~~~~i~~~~~~t~~el~~~l~~~~ 358 (421)
...+.+++|+|++++.++..+... ..|++|++.++..+++.|+++.+.+.+
T Consensus 226 ---------~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 226 ---------AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp ---------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC------------
T ss_pred ---------CcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 124789999999999998764333 678999999999999999999988754
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-30 Score=238.98 Aligned_cols=245 Identities=16% Similarity=0.084 Sum_probs=176.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+||||||+||||++++++|+++|++|++++|+.+..+. ... ....++.++.+|++|.++++++++.+
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~----~~~--~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDD----LVA--AYPDRAEAISLDVTDGERIDVVAADVLAR 76 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH----HHH--HCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHH--hccCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999996543221 111 12457999999999999999998865
Q ss_pred --CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHH----HHHhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLE----ACKSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~----~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++ .+++.+. ++||++||...+.
T Consensus 77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~------------ 143 (281)
T 3m1a_A 77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGS-GSVVNISSFGGQL------------ 143 (281)
T ss_dssp HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTC------------
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEEcCccccC------------
Confidence 78999999998643 22334556789999999555444 4466554 4999999987653
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-----hHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM-----AYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
+.++...|+.||.+.|.+++.++.+ +|+++++++||.|.+|...... ....+........... ...
T Consensus 144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 217 (281)
T 3m1a_A 144 SFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLV------QGS 217 (281)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHH------HC-
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHH------hhc
Confidence 2346788999999999999999988 6999999999999887432110 0011111111000000 011
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCC
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKV 360 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~ 360 (421)
....+.+++|+|++++.+++.+ ..+..|+++++....+.+....+.+.++.
T Consensus 218 ~~~~~~~~~dva~a~~~~~~~~---~~~~~~~l~s~~~~~i~g~~~~i~~~~~~ 268 (281)
T 3m1a_A 218 DGSQPGDPAKAAAAIRLALDTE---KTPLRLALGGDAVDFLTGHLDSVRAELTE 268 (281)
T ss_dssp ----CBCHHHHHHHHHHHHHSS---SCCSEEEESHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhCC---CCCeEEecCchHHHHHHHHHHHHHHHHHH
Confidence 2235788999999999999877 34678999988777777777777776653
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=232.22 Aligned_cols=232 Identities=16% Similarity=0.169 Sum_probs=174.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||++++++|+++|++|++++|+.+..+...... .....++.++.+|++|+++++++++.+
T Consensus 8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 84 (255)
T 1fmc_A 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI---QQLGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH---HHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH---HHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999643211111111 112357889999999999999988754
Q ss_pred ---CCcEEEEcccccCch---hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR---YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 85 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~------------ 151 (255)
T 1fmc_A 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG-GVILTITSMAAEN------------ 151 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTC------------
T ss_pred hcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhcC------------
Confidence 679999999986431 2234456789999999999998874 3443 4999999988764
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+..+...|+.||.+.|.+++.++++. |+++++++||.++++..... ..+.+...+..+.+ ...+
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~------------~~~~ 218 (255)
T 1fmc_A 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV-ITPEIEQKMLQHTP------------IRRL 218 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-CCHHHHHHHHHTCS------------SCSC
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhc-cChHHHHHHHhcCC------------cccC
Confidence 22456789999999999999998774 89999999999998742211 11233344444332 1247
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCH
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTV 347 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~ 347 (421)
.+++|+|++++.++........|++|+++++..+|+
T Consensus 219 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 219 GQPQDIANAALFLCSPAASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred CCHHHHHHHHHHHhCCccccCCCcEEEECCceeccC
Confidence 899999999999997653445789999999887764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=226.56 Aligned_cols=218 Identities=13% Similarity=0.186 Sum_probs=145.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+|+||++++++|+++|++|++++|+.+ ...... .++.++.+|++|.++ +.+.++ |+||
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~---------~~~~~~-~~~~~~~~D~~d~~~--~~~~~~--d~vi 66 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG---------KITQTH-KDINILQKDIFDLTL--SDLSDQ--NVVV 66 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH---------HHHHHC-SSSEEEECCGGGCCH--HHHTTC--SEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch---------hhhhcc-CCCeEEeccccChhh--hhhcCC--CEEE
Confidence 67999999999999999999999999999999642 111112 689999999999887 667666 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC-CCCCCCCCCCCCCChHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN-VPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~-~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||||... ....+|+.++.++++++++.+.. ++|++||..++..... .+..|+.+ ..+...|+.+|...
T Consensus 67 ~~ag~~~---------~~~~~~~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~~-~~~~~~y~~~k~~~ 135 (221)
T 3ew7_A 67 DAYGISP---------DEAEKHVTSLDHLISVLNGTVSP-RLLVVGGAASLQIDEDGNTLLESKG-LREAPYYPTARAQA 135 (221)
T ss_dssp ECCCSST---------TTTTSHHHHHHHHHHHHCSCCSS-EEEEECCCC--------------------CCCSCCHHHHH
T ss_pred ECCcCCc---------cccchHHHHHHHHHHHHHhcCCc-eEEEEecceEEEcCCCCccccccCC-CCCHHHHHHHHHHH
Confidence 9999732 12567999999999999998754 9999999876543332 23344333 35667899999999
Q ss_pred HHHHHHHHH-HhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 250 EEIAHTYNH-IYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 250 e~~~~~~~~-~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
|.+ ..+.+ ..|++++++||+.+|||+..... + ...++.+... +++ .++++++|+|++++.+++++
T Consensus 136 e~~-~~~~~~~~gi~~~ivrp~~v~g~~~~~~~----~---~~~~~~~~~~---~~~---~~~i~~~Dva~~~~~~l~~~ 201 (221)
T 3ew7_A 136 KQL-EHLKSHQAEFSWTYISPSAMFEPGERTGD----Y---QIGKDHLLFG---SDG---NSFISMEDYAIAVLDEIERP 201 (221)
T ss_dssp HHH-HHHHTTTTTSCEEEEECSSCCCCC----------------------------------CCCHHHHHHHHHHHHHSC
T ss_pred HHH-HHHHhhccCccEEEEeCcceecCCCccCc----e---Eeccccceec---CCC---CceEeHHHHHHHHHHHHhCc
Confidence 986 34443 57999999999999998332211 1 1122223222 122 36999999999999999987
Q ss_pred CCCCCceEEEecCCCccCHHH
Q 043169 329 AGPAPYRIFNLGNTSPVTVPK 349 (421)
Q Consensus 329 ~~~~~~~~~~i~~~~~~t~~e 349 (421)
...+++||++++.+.+.+|
T Consensus 202 --~~~g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 202 --NHLNEHFTVAGKLEHHHHH 220 (221)
T ss_dssp --SCTTSEEECCC--------
T ss_pred --cccCCEEEECCCCcccccc
Confidence 5678999999988776654
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=238.46 Aligned_cols=248 Identities=11% Similarity=0.080 Sum_probs=182.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+|+||||+||||++++++|+++|++|++++|+.+..+........ ....++.++.+|++|.++++++++.+
T Consensus 23 ~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS--QTGNKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999964322111111111 11457999999999999999998876
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ....++++..+++|+.|+.++++++.+. ...++||++||...+.
T Consensus 101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~----------- 169 (302)
T 1w6u_A 101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET----------- 169 (302)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-----------
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc-----------
Confidence 78999999997543 2233456678999999999998887532 2234999999987653
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-hHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM-AYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
...+...|+.||.+.+.+++.++.+ +|+++++++||.++++...... .-......+..+.+ ..
T Consensus 170 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p------------~~ 236 (302)
T 1w6u_A 170 -GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP------------CG 236 (302)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT------------TS
T ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCC------------cC
Confidence 1245678999999999999999988 6999999999999987322110 00011122333222 12
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKV 360 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~ 360 (421)
.+.+++|+|++++.++........|++|++.++..+++.|+++.+.+..|.
T Consensus 237 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 237 RLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCCHH
T ss_pred CCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhccc
Confidence 478899999999999976544557899999999888888888877776654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=226.56 Aligned_cols=227 Identities=19% Similarity=0.157 Sum_probs=170.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-C
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-A 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~ 165 (421)
++++|+||||||+||||++++++|+++|++|++++|+.+. ...... ...+++++.+|++|.++++++++.. +
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD----LVSLAK---ECPGIEPVCVDLGDWDATEKALGGIGP 76 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH---HSTTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH---hccCCCcEEecCCCHHHHHHHHHHcCC
Confidence 3678999999999999999999999999999999985321 111111 1246778899999999999999865 5
Q ss_pred CcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|+||||||..... .+.++++..+++|+.|+.++++++.+. +..++||++||...+.. .+
T Consensus 77 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~~ 144 (244)
T 1cyd_A 77 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT------------FP 144 (244)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------CT
T ss_pred CCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCC------------CC
Confidence 79999999976432 123445678999999999999887543 32249999999887642 23
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
+...|+.||.+.|.+++.++++ .|+++++++||.++++..........++..+..+.+ .++++++
T Consensus 145 ~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 212 (244)
T 1cyd_A 145 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHP------------LRKFAEV 212 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHST------------TSSCBCH
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhcCC------------ccCCCCH
Confidence 4578999999999999999887 589999999999999732210011223333333222 3468999
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+|+|++++.++..+.....|+.+++.++..
T Consensus 213 ~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 213 EDVVNSILFLLSDRSASTSGGGILVDAGYL 242 (244)
T ss_dssp HHHHHHHHHHHSGGGTTCCSSEEEESTTGG
T ss_pred HHHHHHHHHHhCchhhcccCCEEEECCCcc
Confidence 999999999998764456789999987753
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=227.70 Aligned_cols=247 Identities=14% Similarity=0.157 Sum_probs=176.3
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC--------ChhHHHH-HHHhhcCCceEEEEcccCCHH
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY--------DPSLKKA-RKALLNNHGVFVIEGDINDAK 155 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~-~~~~~~~~~v~~~~~Dl~d~~ 155 (421)
+.++++|++|||||+||||++++++|+++|++|++++|+.+.. ....... ........++.++.+|++|.+
T Consensus 5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 84 (281)
T 3s55_A 5 MADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRA 84 (281)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 4457899999999999999999999999999999999975331 1111111 111123467899999999999
Q ss_pred HHHHHhhcc-----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccC
Q 043169 156 LLAKLFDAV-----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYG 222 (421)
Q Consensus 156 ~~~~~~~~~-----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g 222 (421)
+++++++.+ ++|+||||||+... ..+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~ 163 (281)
T 3s55_A 85 ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNY-GRIVTVSSMLGHS 163 (281)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGGS
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECChhhcC
Confidence 999998865 78999999998643 22344567889999999999999863 3443 4999999987763
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCC---e
Q 043169 223 LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKP---I 296 (421)
Q Consensus 223 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~---~ 296 (421)
+..+...|+.||.+.+.+++.++.+ +||++++|+||.|++|..........+......... .
T Consensus 164 ------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (281)
T 3s55_A 164 ------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVE 231 (281)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHH
T ss_pred ------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHH
Confidence 2245678999999999999999987 589999999999999854321100000000000000 0
Q ss_pred EEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 297 TVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
..+. ........+.+++|+|++++.++........|+++++.+|...+
T Consensus 232 ~~~~--~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 232 SVFA--SLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHH--HHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGG
T ss_pred HHHH--hhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCcccC
Confidence 0000 00112256899999999999999877566789999999886544
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=228.57 Aligned_cols=245 Identities=14% Similarity=0.097 Sum_probs=176.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC--------ChhHHHHH-HHhhcCCceEEEEcccCCHHHH
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY--------DPSLKKAR-KALLNNHGVFVIEGDINDAKLL 157 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~-~~~~~~~~v~~~~~Dl~d~~~~ 157 (421)
++++|+||||||+|+||.+++++|+++|++|++++|+.... .+...... .......++.++.+|++|.+++
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL 89 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 47899999999999999999999999999999999874211 11111111 1112346899999999999999
Q ss_pred HHHhhcc-----CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCC
Q 043169 158 AKLFDAV-----AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 158 ~~~~~~~-----~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~ 228 (421)
+++++.+ ++|+||||||+.......++++..+++|+.|+.++++++.+ .+..++||++||...+....
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--- 166 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG--- 166 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC---
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc---
Confidence 9998865 78999999998755444566788999999999999998743 33234999999987653211
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
.+.++...|+.||.+.+.+++.++.++ ||++++|+||.|.+|..........+............+ .+.
T Consensus 167 -----~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 238 (278)
T 3sx2_A 167 -----SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAM---GNA 238 (278)
T ss_dssp -----CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTT---SCS
T ss_pred -----cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhh---hhh
Confidence 011334679999999999999999874 799999999999998544221111111111111111111 122
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.. ..+++++|+|++++.++........|+++++.+|.
T Consensus 239 ~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 275 (278)
T 3sx2_A 239 MP-VEVLAPEDVANAVAWLVSDQARYITGVTLPVDAGF 275 (278)
T ss_dssp SS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred cC-cCcCCHHHHHHHHHHHhCcccccccCCEEeECCCc
Confidence 22 56889999999999999876556789999998764
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=225.26 Aligned_cols=227 Identities=13% Similarity=0.094 Sum_probs=165.6
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|++|||||+||||++++++|+++|++|++++|+.+..+...... ..++.++.+|++|.++++++++.+
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~ 76 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL------GAAVRFRNADVTNEADATAALAFAK 76 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------------CEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh------CCceEEEEccCCCHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999876554433221 356889999999999999998865
Q ss_pred ----CCcEEEEcccccCch--------hhccCCchhhhhhHHHHHHHHHHHHhc---------CCCCeEEEEccccccCC
Q 043169 165 ----AFTHVMHLAAQAGVR--------YAMQNPHSYVHSNIAGLVTLLEACKSA---------NPQPSIVWASSSSVYGL 223 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~--------~~~~~~~~~~~~N~~g~~~l~~~~~~~---------~~~~riV~~SS~~v~g~ 223 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. +..++||++||...+.
T Consensus 77 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~- 155 (257)
T 3tpc_A 77 QEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD- 155 (257)
T ss_dssp HHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH-
T ss_pred HHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc-
Confidence 789999999986431 223456678999999999999988643 1234899999987652
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEe
Q 043169 224 NENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300 (421)
Q Consensus 224 ~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (421)
...+...|+.||.+.+.+++.++.+ +||++++|+||.|.++..... .......+...
T Consensus 156 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~------- 215 (257)
T 3tpc_A 156 -----------GQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGM--PQDVQDALAAS------- 215 (257)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC----------------CC-------
T ss_pred -----------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccC--CHHHHHHHHhc-------
Confidence 2245678999999999999999988 689999999999998743210 01111111111
Q ss_pred cCCCCcce-eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 301 GKNHVDLA-RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 301 ~~~~~~~~-~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
... ..+.+++|+|++++.+++.. ...|+++++.+|..++
T Consensus 216 -----~p~~~r~~~~~dva~~v~~l~s~~--~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 216 -----VPFPPRLGRAEEYAALVKHICENT--MLNGEVIRLDGALRMA 255 (257)
T ss_dssp -----SSSSCSCBCHHHHHHHHHHHHHCT--TCCSCEEEESTTCCC-
T ss_pred -----CCCCCCCCCHHHHHHHHHHHcccC--CcCCcEEEECCCccCC
Confidence 111 34789999999999999764 6789999999876543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-29 Score=229.17 Aligned_cols=234 Identities=16% Similarity=0.118 Sum_probs=176.3
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.++++|++|||||+||||++++++|+++|++|++++|+.+..+...... .....++.++.+|++|.++++++++.+
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 83 (256)
T 3gaf_A 7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAI---RQAGGKAIGLECNVTDEQHREAVIKAA 83 (256)
T ss_dssp TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH---HHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999653222221111 112467899999999999999988865
Q ss_pred -----CCcEEEEcccccCch---hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR---YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ .++||++||...+.
T Consensus 84 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~---------- 152 (256)
T 3gaf_A 84 LDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAG-GGAILNISSMAGEN---------- 152 (256)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTC----------
T ss_pred HHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHHHcC----------
Confidence 789999999986542 2344566789999999999999873 333 34999999988753
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.++...|+.||.+.+.+++.++.++ ||++++|+||.|.++..... ........+....+ ..
T Consensus 153 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~p------------~~ 217 (256)
T 3gaf_A 153 --TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATV-LTPEIERAMLKHTP------------LG 217 (256)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHH-CCHHHHHHHHTTCT------------TS
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhc-cCHHHHHHHHhcCC------------CC
Confidence 22456789999999999999999874 89999999999988621100 00122233333222 23
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCH
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTV 347 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~ 347 (421)
.+.+++|+|++++.++........|+++++.+|...++
T Consensus 218 r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 218 RLGEAQDIANAALFLCSPAAAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCC-
T ss_pred CCCCHHHHHHHHHHHcCCcccCccCCEEEECCCccccC
Confidence 47889999999999998765567899999999876654
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=228.63 Aligned_cols=234 Identities=11% Similarity=0.064 Sum_probs=171.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+||||++++++|+++|++|++++|+.+..+........ ....++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKE--KFGVRVLEVAVDVATPEGVDAVVESVRS 81 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999964322111111111 11357899999999999999988764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++++..+++|+.|+.++++++. +.+. ++||++||...+..
T Consensus 82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 150 (263)
T 3ai3_A 82 SFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGG-GAIIHNASICAVQP---------- 150 (263)
T ss_dssp HHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECchhhcCC----------
Confidence 689999999986431 2334556789999999999888874 3443 49999999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCh---------HHHHHHHHHcCCCeEEEec
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMA---------YFSFTRNILQGKPITVYRG 301 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 301 (421)
.++...|+.||.+.+.+++.++.+ +|+++++|+||.|++|....... ...+...+....
T Consensus 151 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 221 (263)
T 3ai3_A 151 --LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH------- 221 (263)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH-------
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC-------
Confidence 234678999999999999999887 58999999999999973210000 011111111110
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
.....+.+++|+|++++.++..+.....|++|++.++..++
T Consensus 222 ----~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 222 ----APIKRFASPEELANFFVFLCSERATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp ----CTTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTCCCC
T ss_pred ----CCCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECCCcccc
Confidence 11235889999999999999866445678999999886554
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=223.93 Aligned_cols=217 Identities=15% Similarity=0.156 Sum_probs=170.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+||||++++++|+++|++|++++|+.+... ..++.++.+|++|+++++++++.+
T Consensus 25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dv~d~~~v~~~~~~~~~ 92 (260)
T 3un1_A 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA------------DPDIHTVAGDISKPETADRIVREGIE 92 (260)
T ss_dssp HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS------------STTEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc------------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999765332 236899999999999999998865
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+...
T Consensus 93 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~--------- 162 (260)
T 3un1_A 93 RFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGS-GHIVSITTSLVDQPM--------- 162 (260)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCTTTTSCB---------
T ss_pred HCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEEechhhccCC---------
Confidence 789999999986432 234456678999999999999987 44443 499999998765321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+..+...|+.||.+.+.+++.++.++ ||++++|+||.|++|..... ....+.... ....
T Consensus 163 -~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-----~~~~~~~~~------------p~~r 224 (260)
T 3un1_A 163 -VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE-----THSTLAGLH------------PVGR 224 (260)
T ss_dssp -TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG-----GHHHHHTTS------------TTSS
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH-----HHHHHhccC------------CCCC
Confidence 22356789999999999999999886 89999999999999854321 111222222 2234
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
+.+++|+|++++.+.+.. ...|++|++.+|...
T Consensus 225 ~~~~~dva~av~~L~~~~--~itG~~i~vdGG~~~ 257 (260)
T 3un1_A 225 MGEIRDVVDAVLYLEHAG--FITGEILHVDGGQNA 257 (260)
T ss_dssp CBCHHHHHHHHHHHHHCT--TCCSCEEEESTTGGG
T ss_pred CcCHHHHHHHHHHhcccC--CCCCcEEEECCCeec
Confidence 778999999999984433 578999999987643
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=232.60 Aligned_cols=235 Identities=16% Similarity=0.132 Sum_probs=178.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.+|+|+||||+|+||++++++|+++| ++|++++|+.+... . ......+++++.+|++|++++.++++++ |
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~--~-----~~l~~~~~~~~~~D~~d~~~l~~~~~~~--d 74 (299)
T 2wm3_A 4 DKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKA--A-----KELRLQGAEVVQGDQDDQVIMELALNGA--Y 74 (299)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHH--H-----HHHHHTTCEEEECCTTCHHHHHHHHTTC--S
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHH--H-----HHHHHCCCEEEEecCCCHHHHHHHHhcC--C
Confidence 35899999999999999999999999 99999999654211 0 1112257899999999999999999987 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
+|||+||.... ...+.|+.++.+++++|++.+++ +||++||..+|+... ..+...|+.+|.
T Consensus 75 ~vi~~a~~~~~--------~~~~~~~~~~~~~~~aa~~~gv~-~iv~~S~~~~~~~~~----------~~~~~~y~~sK~ 135 (299)
T 2wm3_A 75 ATFIVTNYWES--------CSQEQEVKQGKLLADLARRLGLH-YVVYSGLENIKKLTA----------GRLAAAHFDGKG 135 (299)
T ss_dssp EEEECCCHHHH--------TCHHHHHHHHHHHHHHHHHHTCS-EEEECCCCCHHHHTT----------TSCCCHHHHHHH
T ss_pred EEEEeCCCCcc--------ccchHHHHHHHHHHHHHHHcCCC-EEEEEcCccccccCC----------CcccCchhhHHH
Confidence 99999985311 12457888999999999998865 999988887775211 123478999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHH-HHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRN-ILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
++|.++++ .|++++++|||.+||+.... +... ...+....+.. ..++..++|+|++|+|++++.++.
T Consensus 136 ~~e~~~~~----~gi~~~ilrp~~~~~~~~~~------~~~~~~~~g~~~~~~~--~~~~~~~~~i~~~Dva~~~~~~l~ 203 (299)
T 2wm3_A 136 EVEEYFRD----IGVPMTSVRLPCYFENLLSH------FLPQKAPDGKSYLLSL--PTGDVPMDGMSVSDLGPVVLSLLK 203 (299)
T ss_dssp HHHHHHHH----HTCCEEEEECCEEGGGGGTT------TCCEECTTSSSEEECC--CCTTSCEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHH----CCCCEEEEeecHHhhhchhh------cCCcccCCCCEEEEEe--cCCCCccceecHHHHHHHHHHHHc
Confidence 99998875 59999999999999973220 1101 11232222211 236778999999999999999998
Q ss_pred cCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccc
Q 043169 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKN 365 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~ 365 (421)
++. ...+++|++++ +.+|+.|+++.+.+.+|.+.+..
T Consensus 204 ~~~-~~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~ 240 (299)
T 2wm3_A 204 MPE-KYVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDA 240 (299)
T ss_dssp SHH-HHTTCEEECCS-EEECHHHHHHHHHHHHSSCEEEC
T ss_pred Chh-hhCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeE
Confidence 641 12468999986 67999999999999999876543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=227.00 Aligned_cols=241 Identities=17% Similarity=0.147 Sum_probs=173.3
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC---------ChhHHHHHHH-hhcCCceEEEEcccCCH
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY---------DPSLKKARKA-LLNNHGVFVIEGDINDA 154 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~---------~~~~~~~~~~-~~~~~~v~~~~~Dl~d~ 154 (421)
+.++++|++|||||+||||.+++++|+++|++|++++|+.+.. .+..+..... .....++.++.+|++|.
T Consensus 10 ~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 89 (280)
T 3pgx_A 10 AGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDD 89 (280)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 3457899999999999999999999999999999999853211 1111111111 12346788999999999
Q ss_pred HHHHHHhhcc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEcccccc
Q 043169 155 KLLAKLFDAV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVY 221 (421)
Q Consensus 155 ~~~~~~~~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~ 221 (421)
++++++++.+ ++|+||||||..... .+.++++..+++|+.|+.++++++. +.+..++||++||...+
T Consensus 90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 169 (280)
T 3pgx_A 90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGL 169 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhc
Confidence 9999998865 789999999986532 2344556789999999999999873 33323489999998775
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHc-CCCeE
Q 043169 222 GLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ-GKPIT 297 (421)
Q Consensus 222 g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~ 297 (421)
. ..+....|+.||.+.+.+++.++.+ +||++++|+||.|++|....... ......... .....
T Consensus 170 ~------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~-~~~~~~~~~~~~~~~ 236 (280)
T 3pgx_A 170 K------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAM-MEIFARHPSFVHSFP 236 (280)
T ss_dssp S------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHH-HHHHHHCGGGGGGSC
T ss_pred c------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhh-hhhhhcCchhhhhhh
Confidence 3 2245678999999999999999987 58999999999999985442111 111110000 01010
Q ss_pred EEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 298 VYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 298 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.. ..... .+.+++|+|++++.++........|+++++.+|.
T Consensus 237 ~~----~~~~~-r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 237 PM----PVQPN-GFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGA 277 (280)
T ss_dssp CB----TTBCS-SCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTG
T ss_pred hc----ccCCC-CCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 11 11112 3899999999999999876556789999998764
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=216.23 Aligned_cols=220 Identities=17% Similarity=0.176 Sum_probs=172.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-CC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-AF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 166 (421)
.+||++|||||+++||.++++.|+++|++|++.+|+.+..+.. ...++..+.+|++|+++++++++++ ++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~---------~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 79 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP---------RHPRIRREELDITDSQRLQRLFEALPRL 79 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC---------CCTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh---------hcCCeEEEEecCCCHHHHHHHHHhcCCC
Confidence 4799999999999999999999999999999999987654432 3467899999999999999999887 79
Q ss_pred cEEEEcccccCc--hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCC
Q 043169 167 THVMHLAAQAGV--RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS 240 (421)
Q Consensus 167 d~vi~~Ag~~~~--~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~ 240 (421)
|++|||||+..+ ..+.++++..+++|+.|+..+.+++. +.+ ++||++||....- ..+...
T Consensus 80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~--G~IVnisS~~~~~------------~~~~~~ 145 (242)
T 4b79_A 80 DVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG--GSILNIASMYSTF------------GSADRP 145 (242)
T ss_dssp SEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--EEEEEECCGGGTS------------CCSSCH
T ss_pred CEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEeeccccC------------CCCCCH
Confidence 999999998654 23445677899999999888888763 333 3999999987542 223457
Q ss_pred hHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHH
Q 043169 241 LYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 317 (421)
.|+.||.+...+++.++.+ +||+|++|.||.|..|-......-....+.+.+..|+. -+..++|+
T Consensus 146 ~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~Plg------------R~g~peei 213 (242)
T 4b79_A 146 AYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLA------------RWGEAPEV 213 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTC------------SCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCC------------CCcCHHHH
Confidence 8999999999999999988 48999999999998874321111123344444444321 15568999
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCC
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
|.+++.++........|+++.+.+|
T Consensus 214 A~~v~fLaSd~a~~iTG~~l~VDGG 238 (242)
T 4b79_A 214 ASAAAFLCGPGASFVTGAVLAVDGG 238 (242)
T ss_dssp HHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHhCchhcCccCceEEECcc
Confidence 9999999987767788999999876
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=225.98 Aligned_cols=233 Identities=16% Similarity=0.088 Sum_probs=175.1
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.++++|++|||||+|+||++++++|+++|++|++++|+.+..+...... ......++.++.+|++|.++++++++.+
T Consensus 5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADL--DQLGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--HTTSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH--HhhCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 44578999999999999999999999999999999999653222221111 1112257899999999999999988765
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++.+. +. ++||++||.....
T Consensus 83 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~--------- 152 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGS-GRVVLTSSITGPI--------- 152 (262)
T ss_dssp HHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSS-CEEEEECCSBTTT---------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEechhhcc---------
Confidence 789999999986432 234455678999999999999887543 43 4999999976421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
...++...|+.||.+.+.+++.++.+ +||++++|+||.|++|..... ...+...+....+.
T Consensus 153 --~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~------------ 216 (262)
T 3pk0_A 153 --TGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLEN--GEEYIASMARSIPA------------ 216 (262)
T ss_dssp --BCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTT--CHHHHHHHHTTSTT------------
T ss_pred --CCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccccc--CHHHHHHHHhcCCC------------
Confidence 11245678999999999999999988 589999999999998732211 12333334433321
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
.-+.+++|+|++++.++........|+++++.+|..+
T Consensus 217 ~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 217 GALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQVL 253 (262)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred CCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCeec
Confidence 2367899999999999987656788999999987643
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=222.41 Aligned_cols=226 Identities=15% Similarity=0.119 Sum_probs=172.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+.+|++|||||+||||++++++|+++|++|++++++... ..+..... .....++.++++|++|.++++++++.+
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 78 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKE---KAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVS 78 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999999998875421 11111111 112457889999999999999998865
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~----------- 146 (246)
T 3osu_A 79 QFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRS-GAIINLSSVVGAV----------- 146 (246)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHH-----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEEcchhhcC-----------
Confidence 789999999986432 234456678999999999999988 44443 4999999976542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..++...|+.||.+.+.+++.++.+ +|+++++|+||.|.++.... ....+...+..+.+. ..
T Consensus 147 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--~~~~~~~~~~~~~p~------------~r 211 (246)
T 3osu_A 147 -GNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA--LSDELKEQMLTQIPL------------AR 211 (246)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSC--SCHHHHHHHHTTCTT------------CS
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccc--cCHHHHHHHHhcCCC------------CC
Confidence 2245678999999999999999886 58999999999999985432 123444445444332 24
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+.+++|+|++++.++........|++|++.+|.
T Consensus 212 ~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 212 FGQDTDIANTVAFLASDKAKYITGQTIHVNGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 678899999999999876556789999998874
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=220.47 Aligned_cols=228 Identities=18% Similarity=0.158 Sum_probs=168.6
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|+|+||||+||||++++++|+++|++|++++|+.+. .+.... ...++.++.+|++|.++++++++..
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD----LDSLVR---ECPGIEPVCVDLGDWEATERALGSVG 75 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH---HSTTCEEEECCTTCHHHHHHHHTTCC
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH---HcCCCCEEEEeCCCHHHHHHHHHHcC
Confidence 34788999999999999999999999999999999985321 111111 1135778899999999999999865
Q ss_pred CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||..... ...++++..+++|+.++.++++++.+. +..++||++||...+. +.
T Consensus 76 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~ 143 (244)
T 3d3w_A 76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------AV 143 (244)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CC
T ss_pred CCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc------------CC
Confidence 589999999976432 123345678999999999988887542 3234999999988763 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
++...|+.||.+.|.+++.++.+ .|+++++++||.++++..............+..+.+ ...+++
T Consensus 144 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 211 (244)
T 3d3w_A 144 TNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP------------LGKFAE 211 (244)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTCT------------TCSCBC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHhhCC------------CCCCcC
Confidence 45678999999999999999877 489999999999999742210000011122222211 235889
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
++|+|++++.++........|+.|++.++..
T Consensus 212 ~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 212 VEHVVNAILFLLSDRSGMTTGSTLPVEGGFW 242 (244)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 9999999999998654456789999988753
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=225.15 Aligned_cols=231 Identities=16% Similarity=0.102 Sum_probs=170.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+|+||||+||||++++++|+++|++|++++|+.+..+...+.. .....++.++.+|++|.++++++++.+
T Consensus 10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (260)
T 3awd_A 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDL---RMEGHDVSSVVMDVTNTESVQNAVRSVHE 86 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---HHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999643211111111 112357899999999999999988754
Q ss_pred ---CCcEEEEcccccC-c----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAG-V----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~-~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||... . ....+++...+++|+.|+.++++++.+ .+. ++||++||...+...
T Consensus 87 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~~-------- 157 (260)
T 3awd_A 87 QEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQ-GVIVAIGSMSGLIVN-------- 157 (260)
T ss_dssp HHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC--------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCC-CEEEEEecchhcccC--------
Confidence 6899999999764 1 112334467899999999999988754 343 499999998765311
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+..+...|+.||.+.|.+++.++.+ +|+++++|+||.+++|..........+...+..+.+ ..
T Consensus 158 --~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 223 (260)
T 3awd_A 158 --RPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTP------------MG 223 (260)
T ss_dssp --SSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCT------------TS
T ss_pred --CCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCC------------cC
Confidence 1123478999999999999999887 699999999999999854311001233333333322 12
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+++++|+|++++.++........|++|++.++.
T Consensus 224 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 224 RVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence 4789999999999998765445678999998864
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=225.00 Aligned_cols=230 Identities=13% Similarity=0.061 Sum_probs=172.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL-DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.++|+||||||+||||++++++|+++|++|+++ +|+.+..+...+. ......++.++.+|++|.++++++++.+
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEE---IEKLGVKVLVVKANVGQPAKIKEMFQQIDE 78 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH---HHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH---HHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999999999999997 6643211111111 1112457899999999999999999876
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ .++||++||...+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~----------- 146 (258)
T 3oid_A 79 TFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG-GGHIVSISSLGSIR----------- 146 (258)
T ss_dssp HHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEEEEGGGTS-----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhCC-----------
Confidence 789999999975432 2334456789999999999998873 333 34999999987752
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+..+...|+.||.+.+.+++.++.++ ||++++|+||.|.++..........+...+....+ ...
T Consensus 147 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------~~r 213 (258)
T 3oid_A 147 -YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTP------------AGR 213 (258)
T ss_dssp -BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCT------------TSS
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCC------------CCC
Confidence 22456889999999999999999884 89999999999998743322112233333333222 224
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
+.+++|+|++++.++........|+++++.+|...
T Consensus 214 ~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 248 (258)
T 3oid_A 214 MVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRSL 248 (258)
T ss_dssp CBCHHHHHHHHHHHTSSTTTTCCSCEEEESTTGGG
T ss_pred CcCHHHHHHHHHHHhCcccCCccCCEEEECCCccC
Confidence 77899999999999987766788999999987643
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=224.38 Aligned_cols=240 Identities=14% Similarity=0.120 Sum_probs=168.8
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh--hcCCceEEEEcccCCHHHHHHHhh
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL--LNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
+.++.+|++|||||+||||++++++|+++|++|++++|+... ..+...... ....++.++.+|++|.++++++++
T Consensus 20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 96 (281)
T 3v2h_A 20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPD---EIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMA 96 (281)
T ss_dssp --CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHH---HHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChH---HHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHH
Confidence 345789999999999999999999999999999999984321 111111111 124678999999999999999988
Q ss_pred cc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCC
Q 043169 163 AV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPF 229 (421)
Q Consensus 163 ~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~ 229 (421)
.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 97 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~------- 168 (281)
T 3v2h_A 97 MVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGW-GRIINIASAHGLV------- 168 (281)
T ss_dssp HHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS-------
T ss_pred HHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECCccccc-------
Confidence 65 789999999986432 234456678999999999999987 34443 4999999987652
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCe-EEEecCCCC
Q 043169 230 SEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPI-TVYRGKNHV 305 (421)
Q Consensus 230 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 305 (421)
..+....|+.||.+.+.+++.++.++ ||++++|+||.|.+|..................+.. ..+ ..+
T Consensus 169 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 240 (281)
T 3v2h_A 169 -----ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVM---LKG 240 (281)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-------------------------------C
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHH---Hhc
Confidence 22456789999999999999999874 899999999999997432211000000000000000 011 123
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.....+++++|+|++++.++........|+++++.+|.
T Consensus 241 ~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG~ 278 (281)
T 3v2h_A 241 QPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGGW 278 (281)
T ss_dssp CTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTTG
T ss_pred CCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCCc
Confidence 44567999999999999999876556789999998764
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=224.90 Aligned_cols=235 Identities=17% Similarity=0.106 Sum_probs=173.6
Q ss_pred CCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++|+||||||+ |+||++++++|+++|++|++++|+.+ .+...++.... ...+.++.+|++|.++++++++.+
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~ 80 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEA---LGGALLFRADVTQDEELDALFAGV 80 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHH---TTCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHHHH
Confidence 3678999999999 99999999999999999999999652 11122222111 134789999999999999988865
Q ss_pred -----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+... .++||++||...+.
T Consensus 81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-------- 152 (261)
T 2wyu_A 81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK-------- 152 (261)
T ss_dssp HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS--------
T ss_pred HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC--------
Confidence 68999999998642 123445668899999999999999976521 13999999977652
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.++...|+.||.+.+.+++.++.++ |+++++|+||.|++|..........+...+.+..+.
T Consensus 153 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~----------- 217 (261)
T 2wyu_A 153 ----VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPL----------- 217 (261)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTT-----------
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCC-----------
Confidence 12345789999999999999998875 899999999999998533211122333333332221
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHH
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPK 349 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~e 349 (421)
..+.+++|+|++++.++........|++|++.++..++..|
T Consensus 218 -~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 218 -RRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC--
T ss_pred -CCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCccccCCC
Confidence 13678999999999998765445678999999886655433
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=225.52 Aligned_cols=232 Identities=12% Similarity=0.104 Sum_probs=171.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++|++|||||+|+||.+++++|+++|++|++++|+.+..+. ..... ....++.++.+|++|.++++++++.+
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEE----AKLEIEQFPGQILTVQMDVRNTDDIQKMIEQID 78 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999996432211 11111 12357899999999999999998865
Q ss_pred ----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+..++||++||...+.
T Consensus 79 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 148 (257)
T 3imf_A 79 EKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD---------- 148 (257)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc----------
Confidence 78999999997543 22344566789999999999999873 223234999999987653
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCCCCChH-HHHHHHHHcCCCeEEEecCCCCcc
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVYGPWGRPDMAY-FSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
..+....|+.||.+.+.+++.++.+ +||++++|+||.|.++........ ..+...+.... .
T Consensus 149 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------p 214 (257)
T 3imf_A 149 --AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSV------------P 214 (257)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTS------------T
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcC------------C
Confidence 2245678999999999999988754 489999999999998854321100 01111222221 1
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
...+.+++|+|++++.++........|+++++.+|..++
T Consensus 215 ~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 215 LGRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQHLH 253 (257)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTSC
T ss_pred CCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCcccC
Confidence 234788999999999999876556789999999886543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=222.04 Aligned_cols=231 Identities=13% Similarity=0.034 Sum_probs=171.8
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++||++|||||+++||.++++.|+++|++|++++|+.+..++..++.. ....++.++++|++|+++++++++.+
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~---~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 79 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR---GMGKEVLGVKADVSKKKDVEEFVRRTF 79 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999996544333332222 23467899999999999999988775
Q ss_pred ----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||+... +.+.++++..+++|+.|+.++.+++. +.+ .++||++||...+-
T Consensus 80 ~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~~g~~--------- 149 (254)
T 4fn4_A 80 ETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASIAGIR--------- 149 (254)
T ss_dssp HHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC---------
T ss_pred HHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhcC---------
Confidence 79999999997532 23455677899999999888888763 344 34999999987542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-hHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM-AYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
..+...+|+.||.+...+++.++.+ +||+|++|.||.|-.|-..... .-....+...+..+ .
T Consensus 150 ---~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~-----------~ 215 (254)
T 4fn4_A 150 ---GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMS-----------L 215 (254)
T ss_dssp ---SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHT-----------T
T ss_pred ---CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCC-----------C
Confidence 2234578999999999999999988 4899999999999887322111 00111111111110 0
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..-+..++|+|.+++.++....+...|+++.|.+|-
T Consensus 216 ~~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG~ 251 (254)
T 4fn4_A 216 SSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGL 251 (254)
T ss_dssp CCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCCc
Confidence 011456899999999999877677899999998764
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=225.29 Aligned_cols=231 Identities=12% Similarity=0.087 Sum_probs=173.5
Q ss_pred CCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++|+||||||+ ||||++++++|+++|++|++++|+. ..++..+..... .....++.+|++|.++++++++.+
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQ---LGSDIVLQCDVAEDASIDTMFAELG 82 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHh---cCCcEEEEccCCCHHHHHHHHHHHH
Confidence 678999999999 9999999999999999999999976 322222222221 123578999999999999988765
Q ss_pred ----CCcEEEEcccccCc--------h-hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV--------R-YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~--------~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||.... . .+.++++..+++|+.|+.++++++.+... .++||++||...+.
T Consensus 83 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-------- 154 (265)
T 1qsg_A 83 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-------- 154 (265)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS--------
T ss_pred HHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc--------
Confidence 68999999998642 1 23345678999999999999999976521 13999999987652
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.++...|+.||.+.+.+++.++.++ |+++++|+||.|++|..........+...+....+.
T Consensus 155 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~----------- 219 (265)
T 1qsg_A 155 ----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPI----------- 219 (265)
T ss_dssp ----BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT-----------
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCC-----------
Confidence 12356789999999999999998875 899999999999998543211222333333332221
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
..+.+++|+|++++.++........|++|++.++..++
T Consensus 220 -~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 220 -RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIA 257 (265)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGGB
T ss_pred -CCCCCHHHHHHHHHHHhCchhcCccCCEEEECCCcCCC
Confidence 13678999999999999765445678999999876543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=227.64 Aligned_cols=233 Identities=16% Similarity=0.073 Sum_probs=176.3
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.++++|+||||||+||||.+++++|+++|++|++++|+.+..+...... ......++.++.+|++|.++++++++.+
T Consensus 36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 113 (293)
T 3rih_A 36 MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAEL--GELGAGNVIGVRLDVSDPGSCADAARTV 113 (293)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHH--TTSSSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH--HhhCCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 44578999999999999999999999999999999999765433322221 1112257899999999999999988776
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 114 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iV~isS~~~~~--------- 183 (293)
T 3rih_A 114 VDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGR-GRVILTSSITGPV--------- 183 (293)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSS-CEEEEECCSBTTT---------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEeChhhcc---------
Confidence 789999999986432 234456678999999999999987 34443 4999999976421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
...++...|+.||.+.+.+++.++.+ +||++++|+||.|++|..... ...+...+....+.
T Consensus 184 --~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~------------ 247 (293)
T 3rih_A 184 --TGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDM--GEEYISGMARSIPM------------ 247 (293)
T ss_dssp --BBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHT--CHHHHHHHHTTSTT------------
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhc--cHHHHHHHHhcCCC------------
Confidence 11245678999999999999999987 489999999999998732111 12333444444332
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
.-+..++|+|++++.++........|+++++.+|..+
T Consensus 248 ~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 248 GMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGGQVL 284 (293)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 1256789999999999987656778999999987653
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=227.36 Aligned_cols=233 Identities=13% Similarity=0.074 Sum_probs=173.6
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.++++|+||||||+|+||.++++.|+++|++|++++|+.+..+...++... ....++.++.+|++|.++++++++.+
T Consensus 16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 93 (266)
T 4egf_A 16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGE--QFGTDVHTVAIDLAEPDAPAELARRAA 93 (266)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999965433222222211 12467999999999999999888765
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||+.... ...++++..+++|+.|+.++++++.+ .+..++||++||...+.
T Consensus 94 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 163 (266)
T 4egf_A 94 EAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA---------- 163 (266)
T ss_dssp HHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc----------
Confidence 789999999986532 23344567899999999999888743 23234999999988753
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.+....|+.||.+.+.+++.++.+ +||++++|+||.|.++..............+....+ ..
T Consensus 164 --~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------~~ 229 (266)
T 4egf_A 164 --PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIP------------LG 229 (266)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTCT------------TS
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcCC------------CC
Confidence 2245678999999999999999987 489999999999998621100000112222333222 22
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.+.+++|+|++++.++........|+++++.+|..
T Consensus 230 r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 264 (266)
T 4egf_A 230 RFAVPHEVSDAVVWLASDAASMINGVDIPVDGGYT 264 (266)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCchhcCccCcEEEECCCcc
Confidence 36789999999999998765577899999988754
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=225.35 Aligned_cols=228 Identities=19% Similarity=0.197 Sum_probs=145.0
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|+||||||+|+||.+++++|+++|++|++++|+.+..+...... .....++.++.+|++|.++++++++.+
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQI---VADGGTAISVAVDVSDPESAKAMADRTL 81 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---HHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH---HhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999653222221111 122467899999999999999998865
Q ss_pred ----CCcEEEEcccccCc-------hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV-------RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPF 229 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~-------~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~ 229 (421)
++|+||||||+... ....++++..+++|+.|+.++++++ ++.+. ++||++||...|
T Consensus 82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~-------- 152 (253)
T 3qiv_A 82 AEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGG-GAIVNQSSTAAW-------- 152 (253)
T ss_dssp HHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECC------------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CEEEEECCcccc--------
Confidence 78999999998432 1123445678999999977666665 44443 499999998875
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 230 SEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 230 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
.+...|+.||.+.+.+++.++.++ |+++++|+||.|++|...... ...+...+.++.+
T Consensus 153 -------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~----------- 213 (253)
T 3qiv_A 153 -------LYSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTT-PKEMVDDIVKGLP----------- 213 (253)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-------------------------------------
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcC-cHHHHHHHhccCC-----------
Confidence 234669999999999999999885 799999999999998443211 1122222222222
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
...+.+++|+|++++.++........|++|++.+|..+
T Consensus 214 -~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~~~ 251 (253)
T 3qiv_A 214 -LSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGGQII 251 (253)
T ss_dssp -------CCHHHHHHHHHHSGGGTTCCSCEEEC------
T ss_pred -CCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCeec
Confidence 22356689999999999987655668999999987654
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=225.42 Aligned_cols=205 Identities=9% Similarity=0.001 Sum_probs=163.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+|+|+||||+|+||++++++|+++|+ +|++++|+.+. ...++.++.+|++|.+++.+++ +
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-------------~~~~~~~~~~D~~~~~~~~~~~----~ 66 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------------EHPRLDNPVGPLAELLPQLDGS----I 66 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------------CCTTEECCBSCHHHHGGGCCSC----C
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-------------cCCCceEEeccccCHHHHHHhh----h
Confidence 468999999999999999999999998 99999997653 1257888999999988887776 5
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK 246 (421)
|+||||||.... ...+++..+++|+.++.++++++++.+.+ +||++||..+|+ .+...|+.+|
T Consensus 67 d~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~--------------~~~~~y~~sK 129 (215)
T 2a35_A 67 DTAFCCLGTTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADA--------------KSSIFYNRVK 129 (215)
T ss_dssp SEEEECCCCCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHHH
T ss_pred cEEEECeeeccc--cCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECCcccCC--------------CCccHHHHHH
Confidence 999999997532 24567788999999999999999998865 999999999874 2457899999
Q ss_pred HHHHHHHHHHHHHhCCc-EEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhh
Q 043169 247 KAGEEIAHTYNHIYGLS-ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~-~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l 325 (421)
.++|.+++. .|++ ++++|||.+|||..... . ...+. +....+ .+ ..++++|++|+|++++.++
T Consensus 130 ~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~-~----~~~~~-~~~~~~----~~--~~~~~i~~~Dva~~~~~~~ 193 (215)
T 2a35_A 130 GELEQALQE----QGWPQLTIARPSLLFGPREEFR-L----AEILA-APIARI----LP--GKYHGIEACDLARALWRLA 193 (215)
T ss_dssp HHHHHHHTT----SCCSEEEEEECCSEESTTSCEE-G----GGGTT-CCCC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCeEEEEeCceeeCCCCcch-H----HHHHH-Hhhhhc----cC--CCcCcEeHHHHHHHHHHHH
Confidence 999998876 4899 99999999999965421 1 11111 121222 12 2678999999999999999
Q ss_pred hcCCCCCCceEEEecCCCccCH
Q 043169 326 DTSAGPAPYRIFNLGNTSPVTV 347 (421)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~~t~ 347 (421)
+++. +++||+++++.+++
T Consensus 194 ~~~~----~~~~~i~~~~~~~~ 211 (215)
T 2a35_A 194 LEEG----KGVRFVESDELRKL 211 (215)
T ss_dssp TCCC----SEEEEEEHHHHHHH
T ss_pred hcCC----CCceEEcHHHHHHh
Confidence 8762 78999998766554
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=224.34 Aligned_cols=231 Identities=14% Similarity=0.089 Sum_probs=171.2
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.++++|++|||||+||||.+++++|+++|++|++++|+. ...+..........++.++.+|++|.++++++.+..
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (273)
T 3uf0_A 27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD----GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELA 102 (273)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST----HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999642 111111111123457899999999999998885533
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 103 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~IV~isS~~~~~----------- 170 (273)
T 3uf0_A 103 ATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGS-GRIVTIASMLSFQ----------- 170 (273)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS-----------
T ss_pred hcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcchHhcC-----------
Confidence 789999999986532 234456688999999999999987 33443 4999999988753
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.++...|+.||.+.+.+++.++.+ +||++++|+||.|.+|..............+....+ ...
T Consensus 171 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------~~r 237 (273)
T 3uf0_A 171 -GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARIP------------AGR 237 (273)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHST------------TSS
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCC------------CCC
Confidence 2245678999999999999999988 589999999999998743210000112222222221 224
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
+.+++|+|++++.++........|+++++.+|..+
T Consensus 238 ~~~pedva~~v~~L~s~~a~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 238 WATPEDMVGPAVFLASDAASYVHGQVLAVDGGWLA 272 (273)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHhCchhcCCcCCEEEECcCccC
Confidence 67889999999999987655778999999987643
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-28 Score=225.73 Aligned_cols=256 Identities=13% Similarity=0.066 Sum_probs=177.9
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCC--------hhHHHHHHH-hhcCCceEEEEcccCCHH
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYD--------PSLKKARKA-LLNNHGVFVIEGDINDAK 155 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--------~~~~~~~~~-~~~~~~v~~~~~Dl~d~~ 155 (421)
+.++++|+||||||+||||.+++++|+++|++|++++|+..... ......... .....++.++.+|++|.+
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRA 84 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHH
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 44578999999999999999999999999999999999743221 111111111 123467899999999999
Q ss_pred HHHHHhhcc-----CCcEEEEcccccCch--hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCC
Q 043169 156 LLAKLFDAV-----AFTHVMHLAAQAGVR--YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENV 227 (421)
Q Consensus 156 ~~~~~~~~~-----~~d~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~ 227 (421)
+++++++.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++..... .++||++||...+......
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~ 164 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQP 164 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccc
Confidence 999988865 789999999986543 23445678999999999999999976532 2499999998765322222
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEE----e
Q 043169 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVY----R 300 (421)
Q Consensus 228 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~----~ 300 (421)
+..+.. +.++...|+.||.+.+.+++.++.++ ||++++|+||.|.++....... ............. .
T Consensus 165 ~~~~~~-~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~----~~~~~~~~~~~~~~~~~~ 239 (287)
T 3pxx_A 165 PGAGGP-QGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPM----YRQFRPDLEAPSRADALL 239 (287)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHH----HHHHCTTSSSCCHHHHHH
T ss_pred cccccc-CCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccch----hhhhccccccchhHHHHh
Confidence 222211 11345679999999999999999885 8999999999999985432100 0011000000000 0
Q ss_pred -cCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 301 -GKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 301 -~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
..........+.+++|+|++++.++........|+++++.+|..+
T Consensus 240 ~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~~~ 285 (287)
T 3pxx_A 240 AFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAGAML 285 (287)
T ss_dssp HGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred hhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECchhhh
Confidence 000011114689999999999999977656788999999987654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-28 Score=225.00 Aligned_cols=232 Identities=16% Similarity=0.079 Sum_probs=175.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||++++++|+++|++|++++|+.+. ....... ...++.++.+|++|.++++++++.+
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~----~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESN----IARIREE--FGPRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHH--HGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHH--hCCcceEEEccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999995432 1111111 1357899999999999999888765
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+... .++||++||...+. +.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~ 146 (255)
T 4eso_A 79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG------------GH 146 (255)
T ss_dssp HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS------------BC
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC------------CC
Confidence 789999999986532 23445677899999999999999865311 23999999988753 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC----hHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDM----AYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
++...|+.||.+.+.+++.++.++ |+++++|+||.|.+|...... ....+........+ ..
T Consensus 147 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p------------~~ 214 (255)
T 4eso_A 147 PGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITP------------MK 214 (255)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHST------------TS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCC------------CC
Confidence 456789999999999999999884 899999999999998543211 11122222222111 22
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHH
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPK 349 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~e 349 (421)
.+.+++|+|++++.++.. .....|+++++.+|...++.+
T Consensus 215 r~~~pedvA~~v~~L~s~-~~~itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 215 RNGTADEVARAVLFLAFE-ATFTTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp SCBCHHHHHHHHHHHHHT-CTTCCSCEEEESTTTTTTBCC
T ss_pred CCcCHHHHHHHHHHHcCc-CcCccCCEEEECCCccccCcC
Confidence 367899999999998876 457789999999987665543
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-28 Score=224.80 Aligned_cols=232 Identities=13% Similarity=0.019 Sum_probs=170.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||++++++|+++|++|++++|+.+..+...... .....++.++.+|++|.++++++++.+
T Consensus 11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (260)
T 2zat_A 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATL---QGEGLSVTGTVCHVGKAEDRERLVAMAVN 87 (260)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---HHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999643221111111 112356889999999999999888754
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 88 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~---------- 156 (260)
T 2zat_A 88 LHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGG-GSVLIVSSVGAYH---------- 156 (260)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTS----------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEechhhcC----------
Confidence 68999999997531 12334456789999999998888874 3443 4999999998763
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.++...|+.||.+.+.+++.++.++ |+++++|+||.+.++.......-......+... ....
T Consensus 157 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~------------~~~~ 222 (260)
T 2zat_A 157 --PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKES------------LRIR 222 (260)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHH------------HTCS
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHHhc------------CCCC
Confidence 22456789999999999999998874 899999999999987421000000000111110 1123
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
.+.+++|+|++++.++........|+++++.+|..++
T Consensus 223 ~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 223 RLGNPEDCAGIVSFLCSEDASYITGETVVVGGGTASR 259 (260)
T ss_dssp SCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTTCCCC
T ss_pred CCCCHHHHHHHHHHHcCcccCCccCCEEEECCCcccc
Confidence 4789999999999999876445678999999987665
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-28 Score=222.96 Aligned_cols=229 Identities=14% Similarity=0.083 Sum_probs=155.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc---
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA--- 163 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~--- 163 (421)
.+++|+||||||+|+||++++++|+++|++|++++|+.+..+...... .....++.++.+|++|.++++++++.
T Consensus 11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (266)
T 1xq1_A 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW---QKKGFQVTGSVCDASLRPEREKLMQTVSS 87 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---HHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999543221111111 11235789999999999999988865
Q ss_pred ---cCCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 164 ---VAFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 164 ---~~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
-++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~---------- 156 (266)
T 1xq1_A 88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGC-GNIIFMSSIAGVV---------- 156 (266)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CEEEEEC----------------
T ss_pred HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEccchhcc----------
Confidence 3679999999975432 133445678999999999999988 44554 4999999987653
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
..++...|+.||.+.+.+++.++.++ |+++++|+||.+++|...... ...+...+... ....
T Consensus 157 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~------------~~~~ 221 (266)
T 1xq1_A 157 --SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY-DDEFKKVVISR------------KPLG 221 (266)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------------
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc-CHHHHHHHHhc------------CCCC
Confidence 12356789999999999999998874 899999999999998533210 01111111111 1122
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.+++++|+|++++.++........|+++++.++..
T Consensus 222 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 222 RFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLT 256 (266)
T ss_dssp --CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCEE
T ss_pred CCcCHHHHHHHHHHHcCccccCccCcEEEEcCCcc
Confidence 47899999999999987654456789999998754
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=221.15 Aligned_cols=229 Identities=13% Similarity=0.056 Sum_probs=170.8
Q ss_pred CCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.+++|+||||||+ ||||.++++.|+++|++|++++|+.+ .+......... ..++.++.+|++|.++++++++.+
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~ 93 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKG---FGSDLVVKCDVSLDEDIKNLKKFL 93 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHH
Confidence 3789999999999 99999999999999999999999652 11122222111 134789999999999999988765
Q ss_pred -----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcCC--CCeEEEEccccccCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSANP--QPSIVWASSSSVYGLNENVPF 229 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~riV~~SS~~v~g~~~~~~~ 229 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+... .++||++||...+.
T Consensus 94 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~------- 166 (285)
T 2p91_A 94 EENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK------- 166 (285)
T ss_dssp HHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS-------
T ss_pred HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc-------
Confidence 78999999998643 223345567899999999999999876532 24999999977652
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 230 SEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 230 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
+.++...|+.||.+.+.+++.++.++ ||++++|+||.|++|..........+...+....+.
T Consensus 167 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~---------- 231 (285)
T 2p91_A 167 -----VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPF---------- 231 (285)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTT----------
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCC----------
Confidence 12356789999999999999998774 899999999999998543221222333333322221
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..+.+++|+|++++.++........|++|++.++.
T Consensus 232 --~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 232 --GKPITIEDVGDTAVFLCSDWARAITGEVVHVDNGY 266 (285)
T ss_dssp --SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred --CCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCCc
Confidence 13678999999999999765445678999998774
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-28 Score=224.56 Aligned_cols=229 Identities=13% Similarity=0.118 Sum_probs=172.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|++|||||+|+||++++++|+++|++|++++|+.+..+...+... ....++.++.+|++|.++++++++.+
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVT---DTGRRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999996532222222111 12467999999999999999998865
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+ ++||++||...+.
T Consensus 85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~---------- 152 (264)
T 3ucx_A 85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNSMVVRH---------- 152 (264)
T ss_dssp HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECCGGGGC----------
T ss_pred HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECcchhcc----------
Confidence 78999999987532 22344566789999999999998874 333 4999999987653
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC---------ChHHHHHHHHHcCCCeEEEe
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD---------MAYFSFTRNILQGKPITVYR 300 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 300 (421)
+.++...|+.||.+.+.+++.++.+ +||++++|+||.|++|..... .....+...+..+.
T Consensus 153 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 224 (264)
T 3ucx_A 153 --SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGS------ 224 (264)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS------
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccC------
Confidence 2245678999999999999999987 589999999999998732100 00112222222222
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
....+.+++|+|++++.++........|+++++.+|..
T Consensus 225 ------p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 225 ------DLKRLPTEDEVASAILFMASDLASGITGQALDVNCGEY 262 (264)
T ss_dssp ------SSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred ------CcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 23357899999999999998765567899999988763
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=219.54 Aligned_cols=223 Identities=16% Similarity=0.139 Sum_probs=162.3
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++++|+||||||+||||+++++.|+++|++|++++|+.+.. .+.. ...++.++.+|++|.++++++++.+
T Consensus 22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~ 93 (260)
T 3gem_A 22 HMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHAS---VTEL-----RQAGAVALYGDFSCETGIMAFIDLL 93 (260)
T ss_dssp -----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHH---HHHH-----HHHTCEEEECCTTSHHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHH---HHHH-----HhcCCeEEECCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999976421 1111 1124889999999999999998765
Q ss_pred -----CCcEEEEcccccCch---hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR---YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||..... ...++++..+++|+.|+.++++++.. .+ .++||++||...+.
T Consensus 94 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~---------- 162 (260)
T 3gem_A 94 KTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASE-VADIVHISDDVTRK---------- 162 (260)
T ss_dssp HHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGT----------
T ss_pred HHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEECChhhcC----------
Confidence 789999999986432 22344567899999999999988743 33 24999999987753
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.++...|+.||.+.+.+++.++.++ +|++++|+||.|.++..... .....+....+ ..-
T Consensus 163 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~----~~~~~~~~~~p------------~~r 224 (260)
T 3gem_A 163 --GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDA----AYRANALAKSA------------LGI 224 (260)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC-------------------CC------------SCC
T ss_pred --CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCH----HHHHHHHhcCC------------CCC
Confidence 22456789999999999999999886 49999999999988743211 11111222111 123
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
+..++|+|++++.+++.. ...|+++++.+|..++
T Consensus 225 ~~~~edva~~v~~L~~~~--~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 225 EPGAEVIYQSLRYLLDST--YVTGTTLTVNGGRHVK 258 (260)
T ss_dssp CCCTHHHHHHHHHHHHCS--SCCSCEEEESTTTTTC
T ss_pred CCCHHHHHHHHHHHhhCC--CCCCCEEEECCCcccC
Confidence 556899999999998644 6789999999886554
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-29 Score=228.64 Aligned_cols=228 Identities=16% Similarity=0.107 Sum_probs=166.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--CCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--AFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d~ 168 (421)
|+||||||+||||++++++|+++|++|++++|+.+..+. .+.+|++|.++++++++.. ++|+
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------------~~~~D~~~~~~~~~~~~~~~~~~d~ 65 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA----------------DLSTPGGRETAVAAVLDRCGGVLDG 65 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC----------------CTTSHHHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc----------------cccCCcccHHHHHHHHHHcCCCccE
Confidence 689999999999999999999999999999996543211 1578999999999999865 6799
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCC-CC-------CCC---
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVP-FS-------EAD--- 233 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~-~~-------e~~--- 233 (421)
||||||.... ..+++..+++|+.|+.++++++.+. +. ++||++||..+|+.....+ .. ++.
T Consensus 66 vi~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (255)
T 2dkn_A 66 LVCCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQ-PAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIE 141 (255)
T ss_dssp EEECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHH
T ss_pred EEECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ceEEEEeccccccccccccchhhhhcccchhhhhh
Confidence 9999997542 3457789999999999999987654 32 4999999999886431110 00 000
Q ss_pred ---CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 234 ---RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 234 ---~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
....+...|+.||.+.|.+++.++++ .|++++++|||.++||... .++.....+.....+ .+ .
T Consensus 142 ~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~------~~~~~~~~~~~~~~~----~~-~ 210 (255)
T 2dkn_A 142 LAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQ------ASKADPRYGESTRRF----VA-P 210 (255)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHH------HHHHCTTTHHHHHSC----CC-T
T ss_pred hccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhh------hcccchhhHHHHHHH----HH-H
Confidence 00134578999999999999998876 5999999999999997211 111100000000000 01 3
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHH
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPK 349 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~e 349 (421)
...+++++|+|++++.+++.+.....|++|+++++..++++|
T Consensus 211 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 211 LGRGSEPREVAEAIAFLLGPQASFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHHHCT
T ss_pred hcCCCCHHHHHHHHHHHhCCCcccceeeEEEecCCeEeeeec
Confidence 447899999999999999876444678999999987766544
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=220.65 Aligned_cols=236 Identities=16% Similarity=0.030 Sum_probs=172.6
Q ss_pred cccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 84 QIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 84 ~~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
.++++++|+|+||||+||||.+++++|+++|++|++++|+.+.. + ........++.++.+|++|.++++++++.
T Consensus 10 ~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~----~--~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~ 83 (291)
T 3rd5_A 10 DLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKG----E--AAARTMAGQVEVRELDLQDLSSVRRFADG 83 (291)
T ss_dssp GCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----H--HHHTTSSSEEEEEECCTTCHHHHHHHHHT
T ss_pred hccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHH----H--HHHHHhcCCeeEEEcCCCCHHHHHHHHHh
Confidence 45568999999999999999999999999999999999954211 1 11111245799999999999999999998
Q ss_pred c-CCcEEEEcccccCch--hhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCC-CCCCCCCCCCCCCCC
Q 043169 164 V-AFTHVMHLAAQAGVR--YAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLN-ENVPFSEADRTDQPA 239 (421)
Q Consensus 164 ~-~~d~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~-~~~~~~e~~~~~~~~ 239 (421)
+ ++|+||||||+..+. .+.++++..+++|+.|+.++++++.+...+ |||++||...+... ...+..++..+..+.
T Consensus 84 ~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~~~~~~~~~~~~~~~~~~~~~~~ 162 (291)
T 3rd5_A 84 VSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSMAHWPGRINLEDLNWRSRRYSPW 162 (291)
T ss_dssp CCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCGGGTTCCCCSSCTTCSSSCCCHH
T ss_pred cCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeechhhccCCCCcccccccccCCCCc
Confidence 7 789999999986542 345678899999999999999999888754 99999998876432 222222222333456
Q ss_pred ChHHHHHHHHHHHHHHHHHHh---C--CcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 240 SLYAATKKAGEEIAHTYNHIY---G--LSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~~---g--i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
..|+.||++.+.+++.++.++ | |++++|+||.|.++-..... ..+.. .....+ ..+-..++
T Consensus 163 ~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~--~~~~~-~~~~~~-----------~~~~~~~~ 228 (291)
T 3rd5_A 163 LAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASG--RKLGD-ALMSAA-----------TRVVATDA 228 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC----------------------------------CHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccc--hHHHH-HHHHHH-----------HHHHhCCH
Confidence 789999999999999998774 5 99999999999887433210 01111 001100 11223469
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+|+|++++.++..+ ...|+.+.+.+|
T Consensus 229 ~~~A~~~~~l~~~~--~~~G~~~~vdgG 254 (291)
T 3rd5_A 229 DFGARQTLYAASQD--LPGDSFVGPRFG 254 (291)
T ss_dssp HHHHHHHHHHHHSC--CCTTCEEEETTS
T ss_pred HHHHHHHHHHHcCC--CCCCceeCCccc
Confidence 99999999999875 577888888754
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=225.40 Aligned_cols=235 Identities=15% Similarity=0.099 Sum_probs=175.6
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.++++|+||||||+||||.+++++|+++|++|++++|+.+..+..... ......++.++.+|++|.++++++++.+
T Consensus 4 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (280)
T 3tox_A 4 SRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDE---IAGGGGEAAALAGDVGDEALHEALVELAV 80 (280)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHH---HTTTTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---HHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999964322111111 1112457899999999999999998865
Q ss_pred ----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||+... ..+.++++..+++|+.|+.++++++.+ .+ .++||++||...+.
T Consensus 81 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--------- 150 (280)
T 3tox_A 81 RRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG-GGSLTFTSSFVGHT--------- 150 (280)
T ss_dssp HHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCSBTTT---------
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcChhhCc---------
Confidence 78999999997632 223445678999999999999998743 33 24999999987652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC--hHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDM--AYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
...++...|+.||.+.+.+++.++.++ ||++++|+||.|.+|...... ........+....+
T Consensus 151 --~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p----------- 217 (280)
T 3tox_A 151 --AGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHA----------- 217 (280)
T ss_dssp --BCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTST-----------
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCc-----------
Confidence 122456789999999999999999884 899999999999998532100 01122222222222
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCH
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTV 347 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~ 347 (421)
...+.+++|+|++++.++........|+++++.+|..++.
T Consensus 218 -~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~~~ 257 (280)
T 3tox_A 218 -LKRIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257 (280)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCC
T ss_pred -cCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCCccccc
Confidence 2247789999999999998765678899999998876554
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=215.57 Aligned_cols=227 Identities=16% Similarity=0.091 Sum_probs=159.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||++++++|+++|++|++++|+.+. ...++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~~D~~d~~~~~~~~~~~~~ 70 (250)
T 2fwm_X 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ-------------EQYPFATEVMDVADAAQVAQVCQRLLA 70 (250)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS-------------SCCSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh-------------hcCCceEEEcCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999996541 1123788999999999999998764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 71 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~----------- 138 (250)
T 2fwm_X 71 ETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRG-GAIVTVASDAAHT----------- 138 (250)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTS-----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCC-CEEEEECchhhCC-----------
Confidence 689999999985431 233456788999999999999988 44443 4999999988753
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHH-HHHcCCCeEEEecCCCCccee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTR-NILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.++...|+.||.+.+.+++.++.+. |+++++|+||.++++............. .+.... ..+ .......
T Consensus 139 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~p~~ 212 (250)
T 2fwm_X 139 -PRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFG--EQF---KLGIPLG 212 (250)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC--------------------------------------
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhh--hcc---cccCCCC
Confidence 22456789999999999999998874 8999999999999874321100000000 000000 000 0001122
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.+.+++|+|++++.++........|+.+++.++..
T Consensus 213 ~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 213 KIARPQEIANTILFLASDLASHITLQDIVVDGGST 247 (250)
T ss_dssp ---CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 47899999999999998764567899999988753
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-28 Score=221.33 Aligned_cols=230 Identities=14% Similarity=0.101 Sum_probs=167.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+||||++++++|+++|++|++++|+.+. +. .... .. . .++.+|++|.++++++++.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~----~~~~-~~--~-~~~~~D~~~~~~~~~~~~~~~~ 73 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KE----VAEA-IG--G-AFFQVDLEDERERVRFVEEAAY 73 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HH----HHHH-HT--C-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HH----HHHH-hh--C-CEEEeeCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999997643 11 1111 11 4 78999999999999988765
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++++..+++|+.|+.++++++.+ .+. ++||++||...+.
T Consensus 74 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~----------- 141 (256)
T 2d1y_A 74 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGG-GAIVNVASVQGLF----------- 141 (256)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTS-----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEccccccC-----------
Confidence 789999999986432 12334567899999999999888743 333 4999999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHH-cCCCeEEEecCCCCccee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNIL-QGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 309 (421)
+.++...|+.||.+.+.+++.++.++ |+++++|+||.+.++. ...++.... ..+....+ .......
T Consensus 142 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~------~~~~~~~~~~~~~~~~~~---~~~~~~~ 211 (256)
T 2d1y_A 142 -AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA------VLEAIALSPDPERTRRDW---EDLHALR 211 (256)
T ss_dssp -BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH------HHHHHC--------CHHH---HTTSTTS
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch------hhhccccccCCHHHHHHH---HhcCCCC
Confidence 12345789999999999999998874 8999999999998751 111100000 00000000 0112234
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCH
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTV 347 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~ 347 (421)
.+++++|+|++++.++........|++|++.++...++
T Consensus 212 ~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 212 RLGKPEEVAEAVLFLASEKASFITGAILPVDGGMTASF 249 (256)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC
T ss_pred CCcCHHHHHHHHHHHhCchhcCCCCCEEEECCCccccc
Confidence 58999999999999998764456789999998865544
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-28 Score=222.75 Aligned_cols=231 Identities=14% Similarity=0.077 Sum_probs=168.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc---
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA--- 163 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~--- 163 (421)
++++|+||||||+|+||++++++|+++|++|++++|+.+..+....... ....++.++.+|++|.++++++++.
T Consensus 6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (260)
T 2ae2_A 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR---SKGFKVEASVCDLSSRSERQELMNTVAN 82 (260)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999996432211111111 1235788999999999999888864
Q ss_pred ---cCCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 164 ---VAFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 164 ---~~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
-++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 83 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~---------- 151 (260)
T 2ae2_A 83 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASER-GNVVFISSVSGAL---------- 151 (260)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSS-EEEEEECCGGGTS----------
T ss_pred HcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhcc----------
Confidence 268999999997643 12334566789999999999999883 3443 4999999987653
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC---CCChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGR---PDMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
+.++...|+.||.+.+.+++.++.++ |+++++|+||.+.++... ........+..+....
T Consensus 152 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~------------ 217 (260)
T 2ae2_A 152 --AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRC------------ 217 (260)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTS------------
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcC------------
Confidence 22346789999999999999999874 899999999999886211 0000001011122211
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
....+.+++|+|++++.++........|+++++.+|...
T Consensus 218 ~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~~ 256 (260)
T 2ae2_A 218 ALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLMA 256 (260)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCccc
Confidence 123478999999999999876544567999999887543
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-28 Score=230.84 Aligned_cols=248 Identities=14% Similarity=0.084 Sum_probs=182.2
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC------CCChhHHHHHHH-hhcCCceEEEEcccCCHHHH
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN------YYDPSLKKARKA-LLNNHGVFVIEGDINDAKLL 157 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~------~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~ 157 (421)
+..+++|+||||||+||||.++++.|+++|++|++++|+.. ............ .....++.++.+|++|.+++
T Consensus 22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 101 (322)
T 3qlj_A 22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQA 101 (322)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHH
Confidence 44578999999999999999999999999999999998621 101112221111 12245788999999999999
Q ss_pred HHHhhcc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCC---------CCeEEEEcccc
Q 043169 158 AKLFDAV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANP---------QPSIVWASSSS 219 (421)
Q Consensus 158 ~~~~~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~---------~~riV~~SS~~ 219 (421)
+++++.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++..... .++||++||..
T Consensus 102 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~ 181 (322)
T 3qlj_A 102 AGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGA 181 (322)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHH
Confidence 9988865 789999999986532 23445668899999999999998743210 13999999977
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCe
Q 043169 220 VYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPI 296 (421)
Q Consensus 220 v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 296 (421)
.+. .......|+.||.+.+.+++.++.+ +||++++|+|| +.++-...... ...
T Consensus 182 ~~~------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~--~~~--------- 237 (322)
T 3qlj_A 182 GLQ------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFA--EMM--------- 237 (322)
T ss_dssp HHH------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCC--C-----------
T ss_pred Hcc------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhh--hhh---------
Confidence 642 2235678999999999999999988 58999999999 76653221100 000
Q ss_pred EEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc-----------------CHHHHHHHHHHHhC
Q 043169 297 TVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV-----------------TVPKLVNILERHLK 359 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~-----------------t~~el~~~l~~~~g 359 (421)
......+.++.++|+|.+++.++........|+++++.+|... ++.|+++.+.+.++
T Consensus 238 ------~~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~ 311 (322)
T 3qlj_A 238 ------ATQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLG 311 (322)
T ss_dssp ------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHH
T ss_pred ------hccccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhh
Confidence 0011223467899999999999976655678999999887654 77999999999998
Q ss_pred Ccc
Q 043169 360 VKA 362 (421)
Q Consensus 360 ~~~ 362 (421)
.+.
T Consensus 312 ~~~ 314 (322)
T 3qlj_A 312 KAR 314 (322)
T ss_dssp HSC
T ss_pred ccC
Confidence 543
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-28 Score=224.59 Aligned_cols=234 Identities=16% Similarity=0.068 Sum_probs=165.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--------cCCceEEEEcccCCHHHHH
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL--------NNHGVFVIEGDINDAKLLA 158 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--------~~~~v~~~~~Dl~d~~~~~ 158 (421)
++++|+|+||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|.++++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 79 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAA----QETVRLLGGPGSKEGPPRGNHAAFQADVSEARAAR 79 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH----HHHHHTC------------CCEEEECCTTSHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHH----HHHHHHHHhcCccccccCcceEEEEecCCCHHHHH
Confidence 36789999999999999999999999999999999954311 11111100 0146889999999999999
Q ss_pred HHhhcc-----CC-cEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCC
Q 043169 159 KLFDAV-----AF-THVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLN 224 (421)
Q Consensus 159 ~~~~~~-----~~-d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~ 224 (421)
++++.+ ++ |+||||||..... .+.++++..+++|+.|+.++++++.+. +..++||++||...+.
T Consensus 80 ~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-- 157 (264)
T 2pd6_A 80 CLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV-- 157 (264)
T ss_dssp HHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH--
T ss_pred HHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc--
Confidence 998875 45 9999999986432 233456678999999999999987543 3124999999986542
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEec
Q 043169 225 ENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRG 301 (421)
Q Consensus 225 ~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (421)
+.++...|+.||.+.+.+++.++.+ +|+++++++||.+++|.... ....+...+..+
T Consensus 158 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~-------- 217 (264)
T 2pd6_A 158 ----------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK--VPQKVVDKITEM-------- 217 (264)
T ss_dssp ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC------------CTGGG--------
T ss_pred ----------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhh--cCHHHHHHHHHh--------
Confidence 1235678999999999999999887 69999999999999985431 111111111111
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHH
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKL 350 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el 350 (421)
.....+.+++|+|++++.++........|+.+++.++..++....
T Consensus 218 ----~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~ 262 (264)
T 2pd6_A 218 ----IPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLFMAENLY 262 (264)
T ss_dssp ----CTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC-------
T ss_pred ----CCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCceeccccC
Confidence 112347899999999999987654456789999998876655443
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=221.88 Aligned_cols=240 Identities=12% Similarity=0.056 Sum_probs=177.3
Q ss_pred ccCCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhh
Q 043169 85 IHRSGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 85 ~~~~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
....++|+||||||+ |+||.+++++|+++|++|++++|+.. ..+...... .....+.++.+|++|.++++++++
T Consensus 9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~ 84 (271)
T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFA---AEFGSELVFPCDVADDAQIDALFA 84 (271)
T ss_dssp CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHH---HHTTCCCEEECCTTCHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchh-hHHHHHHHH---HHcCCcEEEECCCCCHHHHHHHHH
Confidence 345789999999999 99999999999999999999999632 111112111 122458899999999999999998
Q ss_pred cc-----CCcEEEEcccccCch---------hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCC
Q 043169 163 AV-----AFTHVMHLAAQAGVR---------YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENV 227 (421)
Q Consensus 163 ~~-----~~d~vi~~Ag~~~~~---------~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~ 227 (421)
.+ ++|+||||||+.... ...++++..+++|+.|+.++++++.+... .++||++||...+.
T Consensus 85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~----- 159 (271)
T 3ek2_A 85 SLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER----- 159 (271)
T ss_dssp HHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----
T ss_pred HHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc-----
Confidence 76 789999999986531 23445567899999999999999865421 23899999987653
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 228 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
+.++...|+.||.+.+.+++.++.++ |+++++|+||.|.++..........+...+....+
T Consensus 160 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--------- 223 (271)
T 3ek2_A 160 -------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSP--------- 223 (271)
T ss_dssp -------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHST---------
T ss_pred -------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCC---------
Confidence 22456889999999999999998874 89999999999998754432222333333333322
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHH
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVN 352 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~ 352 (421)
...+..++|+|++++.++........|+++++.+|..+++.++.+
T Consensus 224 ---~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~~~~ 268 (271)
T 3ek2_A 224 ---LKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGMAG 268 (271)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCCC--
T ss_pred ---cCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhhhhh
Confidence 123678999999999999876556789999999998877766544
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=216.75 Aligned_cols=229 Identities=13% Similarity=0.049 Sum_probs=173.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+++||||+|+||++++++|+++|++|++++|+.+..+...... .....++.++.+|++|.++++++++.+
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSM---KEKGFKARGLVLNISDIESIQNFFAEIKA 78 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---HHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999653222211111 112457899999999999999998875
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++.+ .+. ++||++||...+.
T Consensus 79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~----------- 146 (247)
T 3lyl_A 79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRW-GRIISIGSVVGSA----------- 146 (247)
T ss_dssp TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHH-----------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-eEEEEEcchhhcc-----------
Confidence 689999999986432 23445667899999999999988743 332 4999999987652
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..++...|+.||.+.+.+++.++.+ .|+++++|+||.|.++..... .......+.... ....
T Consensus 147 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~------------~~~~ 211 (247)
T 3lyl_A 147 -GNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKL--TDEQKSFIATKI------------PSGQ 211 (247)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTS--CHHHHHHHHTTS------------TTCC
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhc--cHHHHHHHhhcC------------CCCC
Confidence 2245678999999999999999887 489999999999998754321 112222222222 2235
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
+.+++|+|++++.++........|+++++.+|..+
T Consensus 212 ~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 212 IGEPKDIAAAVAFLASEEAKYITGQTLHVNGGMYM 246 (247)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred CcCHHHHHHHHHHHhCCCcCCccCCEEEECCCEec
Confidence 78999999999999987655678999999887543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=223.01 Aligned_cols=231 Identities=15% Similarity=0.066 Sum_probs=170.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||++++++|+++|++|++++|+.+.. ...... ...++.++.+|++|.++++++++.+
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~----~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAA----DAAATK--IGCGAAACRVDVSDEQQIIAMVDACVA 99 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHH----HHHHHH--HCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHH--cCCcceEEEecCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999854321 111111 1467899999999999999988865
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||+... ..+.++++..+++|+.|+.++++++.+ .+ .++||++||...+.
T Consensus 100 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~----------- 167 (277)
T 3gvc_A 100 AFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERG-GGAIVNLSSLAGQV----------- 167 (277)
T ss_dssp HHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTS-----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhcc-----------
Confidence 78999999998643 223445678899999999999988743 33 34999999987652
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCC---Ccc
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNH---VDL 307 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 307 (421)
..++...|+.||.+.+.+++.++.+ +||++++|+||.|++|.. ................. ...
T Consensus 168 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 236 (277)
T 3gvc_A 168 -AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ----------QTAMAMFDGALGAGGARSMIARL 236 (277)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----------HHHHTCC------CCHHHHHHHH
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH----------HHhhhcchhhHHHHhhhhhhhcc
Confidence 2245678999999999999999887 589999999999998621 11111000000000000 011
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
...+.+++|+|++++.++........|+++++.+|...+
T Consensus 237 ~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 237 QGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGTIAA 275 (277)
T ss_dssp HSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGS
T ss_pred ccCCCCHHHHHHHHHHHcCCccCCccCcEEEECCcchhc
Confidence 234788999999999999876567789999999876543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=227.77 Aligned_cols=232 Identities=11% Similarity=0.080 Sum_probs=173.2
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.++++|++|||||+||||++++++|+++|++|++++|+.+..+...++. .....++.++.+|++|.++++++++.+
T Consensus 22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l---~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEF---RNVGHDAEAVAFDVTSESEIIEAFARLD 98 (271)
T ss_dssp GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH---HHTTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999998653222222211 112457899999999999999998865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++.+ .+. ++||++||...+.
T Consensus 99 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iV~isS~~~~~---------- 167 (271)
T 4ibo_A 99 EQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGY-GKIVNIGSLTSEL---------- 167 (271)
T ss_dssp HHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS----------
T ss_pred HHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEccHHhCC----------
Confidence 689999999986432 23445667899999999999887643 342 4999999977642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
...+...|+.||.+.+.+++.++.+ +||++++|+||.|.++........+.+...+....+ ..
T Consensus 168 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------~~ 233 (271)
T 4ibo_A 168 --ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTP------------AK 233 (271)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHST------------TC
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCC------------CC
Confidence 2245678999999999999999887 589999999999998732210000122222222222 22
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
.+.+++|+|++++.++........|+++++.+|...
T Consensus 234 r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~ 269 (271)
T 4ibo_A 234 RWGKPQELVGTAVFLSASASDYVNGQIIYVDGGMLS 269 (271)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCcEEEECCCeec
Confidence 367789999999999887655678999999987654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-28 Score=226.06 Aligned_cols=231 Identities=14% Similarity=0.106 Sum_probs=173.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+||||++++++|+++|++|++++|+.+........ .......++.++.+|++|.++++++++.+
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQ--YVEKEGVKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH--HHHTTTCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHH--HHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999965321111111 11123457899999999999999988865
Q ss_pred ---CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+... .++||++||...+. .
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------~ 189 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYE------------G 189 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHH------------C
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcC------------C
Confidence 789999999976431 13445678999999999999999976532 24999999987763 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
......|+.||.+.+.+++.++.++ ||++++|+||.|++|...... -......+. .......+.
T Consensus 190 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~-~~~~~~~~~------------~~~p~~r~~ 256 (291)
T 3ijr_A 190 NETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSF-DEKKVSQFG------------SNVPMQRPG 256 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHS-CHHHHHHTT------------TTSTTSSCB
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccC-CHHHHHHHH------------ccCCCCCCc
Confidence 2456789999999999999999885 899999999999987211000 001111111 112234578
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+++|+|++++.++........|+++++.+|..
T Consensus 257 ~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 288 (291)
T 3ijr_A 257 QPYELAPAYVYLASSDSSYVTGQMIHVNGGVI 288 (291)
T ss_dssp CGGGTHHHHHHHHSGGGTTCCSCEEEESSSCC
T ss_pred CHHHHHHHHHHHhCCccCCCcCCEEEECCCcc
Confidence 89999999999998765567899999988754
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=217.36 Aligned_cols=236 Identities=17% Similarity=0.106 Sum_probs=173.1
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC------------ChhHHHHHHH-hhcCCceEEEEcccC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY------------DPSLKKARKA-LLNNHGVFVIEGDIN 152 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~~-~~~~~~v~~~~~Dl~ 152 (421)
.++++|++|||||+|+||.++++.|+++|++|++++|+.... .+........ .....++.++.+|++
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 347899999999999999999999999999999999974221 1112221111 123467899999999
Q ss_pred CHHHHHHHhhcc-----CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccc
Q 043169 153 DAKLLAKLFDAV-----AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSS 218 (421)
Q Consensus 153 d~~~~~~~~~~~-----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~ 218 (421)
|.++++++++.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++.. .+..++||++||.
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 166 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV 166 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence 999999988764 789999999986432 23445667999999999999998743 2323499999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHH---------
Q 043169 219 SVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSF--------- 286 (421)
Q Consensus 219 ~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~--------- 286 (421)
..+. ..+....|+.||.+.+.+++.++.+ +||++++|+||.|.+|..........+
T Consensus 167 ~~~~------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~ 234 (286)
T 3uve_A 167 GGLK------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGP 234 (286)
T ss_dssp GGTS------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCH
T ss_pred hhcc------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccch
Confidence 7752 2245678999999999999999987 589999999999998854321100000
Q ss_pred --HHHH-HcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 287 --TRNI-LQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 287 --~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.... .... .. ...+.+++|+|++++.++........|++++|.+|..
T Consensus 235 ~~~~~~~~~~~----------~~-p~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~ 284 (286)
T 3uve_A 235 DDMAPICQMFH----------TL-PIPWVEPIDISNAVLFFASDEARYITGVTLPIDAGSC 284 (286)
T ss_dssp HHHHHHHHTTC----------SS-SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hhHHHHHHhhh----------cc-CCCcCCHHHHHHHHHHHcCccccCCcCCEEeECCccc
Confidence 0000 0001 11 1457899999999999998765678899999988754
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-28 Score=223.23 Aligned_cols=229 Identities=12% Similarity=0.099 Sum_probs=171.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++++.|+++|++|++.+|+.+..++..++.. ....++.++++|++|+++++++++.+
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~---~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLT---RKGYDAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHH---HTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999996543333322222 12467889999999999999888775
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||+... +.+.++++..+++|+.|+.++.+++. +.+..++||++||...+.
T Consensus 83 ~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~----------- 151 (255)
T 4g81_D 83 EGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA----------- 151 (255)
T ss_dssp TTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------
T ss_pred HCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC-----------
Confidence 79999999998643 23455677899999999988888763 222234999999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..+....|+.||.+...+++.++.+ +||+|++|.||.|..|.......-..+...+.+..|.. -
T Consensus 152 -~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~------------R 218 (255)
T 4g81_D 152 -ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQ------------R 218 (255)
T ss_dssp -BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTC------------S
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCC------------C
Confidence 2244578999999999999999988 48999999999998763210000012222222222211 1
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+..++|+|.+++.++........|+++.|.+|
T Consensus 219 ~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 219 WGRPEELIGTAIFLSSKASDYINGQIIYVDGG 250 (255)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhCCCcCCEEEECCC
Confidence 45679999999999987666788999999876
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-27 Score=220.32 Aligned_cols=232 Identities=13% Similarity=0.047 Sum_probs=175.6
Q ss_pred cCCCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 86 HRSGGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 86 ~~~~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
+++++|+||||||+| +||.++++.|+++|++|++++|+.+.. +....... ....+.++.+|++|.++++++++.
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~-~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFK-KRVDPLAE---SLGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHHHH---HHTCCEEEECCTTCHHHHHHHHHH
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHH-HHHHHHHH---hcCCeEEEEcCCCCHHHHHHHHHH
Confidence 347899999999997 999999999999999999999974321 11111111 124578999999999999999987
Q ss_pred c-----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCC
Q 043169 164 V-----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPF 229 (421)
Q Consensus 164 ~-----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~ 229 (421)
+ ++|+||||||+... ..+.++++..+++|+.|+.++++++..... .++||++||...+.
T Consensus 102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~------- 174 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK------- 174 (296)
T ss_dssp HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-------
T ss_pred HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc-------
Confidence 6 78999999998753 223445668899999999999999876432 24999999987652
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 230 SEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 230 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
..+....|+.||.+.+.+++.++.++ ||++++|+||.|.++..............+....+
T Consensus 175 -----~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p----------- 238 (296)
T 3k31_A 175 -----VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSP----------- 238 (296)
T ss_dssp -----CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHST-----------
T ss_pred -----CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCC-----------
Confidence 22456889999999999999998874 89999999999999854432222223333333222
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
..-+..++|+|++++.++........|+++++.+|..+
T Consensus 239 -~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 276 (296)
T 3k31_A 239 -LRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCGYHV 276 (296)
T ss_dssp -TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred -CCCCCCHHHHHHHHHHHcCCccCCccCCEEEECCCccc
Confidence 12356789999999999987655788999999987653
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=219.88 Aligned_cols=225 Identities=15% Similarity=0.128 Sum_probs=167.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh--hcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL--LNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+|+|+||||+|+||++++++|+++|++|++++|+.+.. ....... ....++.++.+|++|+++++++++..
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETL----EETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQ 77 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999954311 1111111 11346899999999999999998754
Q ss_pred --CCcEEEEcccccCchh-------hccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVRY-------AMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~-------~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||...... ..++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 78 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~--------- 147 (250)
T 2cfc_A 78 FGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGA-GVIVNIASVASLV--------- 147 (250)
T ss_dssp HSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS---------
T ss_pred hCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CEEEEECChhhcc---------
Confidence 6899999999864321 234456789999999887777663 4453 4999999987753
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
..++...|+.||.+.+.+++.++.++ |+++++++||.+++|..........+...+....+ .
T Consensus 148 ---~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~ 212 (250)
T 2cfc_A 148 ---AFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIP------------Q 212 (250)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCT------------T
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCC------------C
Confidence 12356789999999999999998875 89999999999999853310001123333333322 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..+.+++|+|++++.++..+.....|+.+++.++.
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 213 KEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAY 247 (250)
T ss_dssp CSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCchhhcccCCEEEECCce
Confidence 24789999999999999876445678999998764
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=215.28 Aligned_cols=225 Identities=13% Similarity=0.070 Sum_probs=171.0
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|++|||||+|+||++++++|+++|++|++++|+.+.. +..... ....+.++.+|++|.++++++++.+
T Consensus 5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~----~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 78 (248)
T 3op4_A 5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGA----QAISDY--LGDNGKGMALNVTNPESIEAVLKAIT 78 (248)
T ss_dssp TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHH----HHHHHH--HGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHH--hcccceEEEEeCCCHHHHHHHHHHHH
Confidence 447899999999999999999999999999999999954321 111111 1245788999999999999998865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++.+ .+. ++||++||...+.
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~---------- 147 (248)
T 3op4_A 79 DEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQ-GRIINVGSVVGTM---------- 147 (248)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHH----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEEcchhhcC----------
Confidence 789999999986532 23445678899999999999998743 343 4999999976542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.++...|+.||.+.+.+++.++.+ +|+++++|+||.|.++-..... ...........+ ..
T Consensus 148 --~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~p------------~~ 211 (248)
T 3op4_A 148 --GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALN--DEQRTATLAQVP------------AG 211 (248)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSC--HHHHHHHHHTCT------------TC
T ss_pred --CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcC--HHHHHHHHhcCC------------CC
Confidence 2245688999999999999999887 4899999999999987433211 122222222222 22
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+.+++|+|++++.++........|+++++.+|.
T Consensus 212 r~~~p~dva~~v~~L~s~~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 212 RLGDPREIASAVAFLASPEAAYITGETLHVNGGM 245 (248)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHcCCccCCccCcEEEECCCe
Confidence 4788999999999999876556789999998874
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=220.07 Aligned_cols=231 Identities=13% Similarity=0.063 Sum_probs=169.2
Q ss_pred cCCCCCEEEEEcCCC-hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 86 HRSGGMSVLVTGAAG-FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
..+++|+||||||+| +||++++++|+++|++|++++|+.+..+...+.. ......++.++.+|++|.++++++++.+
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQL--ADLGLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--HTTCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH--HhcCCCceEEEEeCCCCHHHHHHHHHHH
Confidence 347899999999986 8999999999999999999999654322222111 1122357999999999999999998876
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++... +..++||++||...+.
T Consensus 96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 166 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR--------- 166 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC---------
T ss_pred HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC---------
Confidence 789999999986432 233455678999999999999987543 2234899999987652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+..+...|+.||.+.+.+++.++.+ +|+++++|+||.|.++...... .......+. .....
T Consensus 167 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~------------~~~~~ 230 (266)
T 3o38_A 167 ---AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTS-SSELLDRLA------------SDEAF 230 (266)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------------------------------CCTT
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccC-cHHHHHHHH------------hcCCc
Confidence 2245688999999999999999887 5899999999999987322110 001111111 12233
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..+.+++|+|++++.++........|+++++.+|.
T Consensus 231 ~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 231 GRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQR 265 (266)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSCC
T ss_pred CCCCCHHHHHHHHHHHcCccccCccCCEEEEcCCc
Confidence 45789999999999999876556789999998763
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=206.52 Aligned_cols=203 Identities=13% Similarity=0.024 Sum_probs=157.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+|+||||+|+||++++++|+++|++|++++|+.+.... ....+++++.+|++|.+++.++++++ |+|
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~--d~v 71 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQ--DAV 71 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccc---------ccCCceEEEEecCCCHHHHHHHHcCC--CEE
Confidence 4899999999999999999999999999999996543221 11457899999999999999999876 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 249 (421)
||+||.... .+ ..++|+.++.++++++++.+.+ +||++||..+|+..... + .+...|+.+|.++
T Consensus 72 i~~a~~~~~----~~---~~~~n~~~~~~~~~~~~~~~~~-~~v~~Ss~~~~~~~~~~-------~-~~~~~y~~~K~~~ 135 (206)
T 1hdo_A 72 IVLLGTRND----LS---PTTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTKV-------P-PRLQAVTDDHIRM 135 (206)
T ss_dssp EECCCCTTC----CS---CCCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTCS-------C-GGGHHHHHHHHHH
T ss_pred EECccCCCC----CC---ccchHHHHHHHHHHHHHHhCCC-eEEEEeeeeeccCcccc-------c-ccchhHHHHHHHH
Confidence 999997542 12 2358999999999999998865 99999999998743221 1 1467899999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC
Q 043169 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 250 e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~ 329 (421)
|.+++. .|++++++||+.+ +++..... ...... +.+. .+++|++|+|++++.+++++
T Consensus 136 e~~~~~----~~i~~~~lrp~~~-~~~~~~~~-------------~~~~~~--~~~~--~~~i~~~Dva~~~~~~~~~~- 192 (206)
T 1hdo_A 136 HKVLRE----SGLKYVAVMPPHI-GDQPLTGA-------------YTVTLD--GRGP--SRVISKHDLGHFMLRCLTTD- 192 (206)
T ss_dssp HHHHHH----TCSEEEEECCSEE-ECCCCCSC-------------CEEESS--SCSS--CSEEEHHHHHHHHHHTTSCS-
T ss_pred HHHHHh----CCCCEEEEeCCcc-cCCCCCcc-------------eEeccc--CCCC--CCccCHHHHHHHHHHHhcCc-
Confidence 998853 6999999999998 33222111 011111 1111 48999999999999999886
Q ss_pred CCCCceEEEecCCC
Q 043169 330 GPAPYRIFNLGNTS 343 (421)
Q Consensus 330 ~~~~~~~~~i~~~~ 343 (421)
...+++|+++++.
T Consensus 193 -~~~g~~~~i~~g~ 205 (206)
T 1hdo_A 193 -EYDGHSTYPSHQY 205 (206)
T ss_dssp -TTTTCEEEEECCC
T ss_pred -cccccceeeeccc
Confidence 4568999999864
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=219.06 Aligned_cols=221 Identities=12% Similarity=0.026 Sum_probs=169.3
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.+.++|+||||||+||||++++++|+++|++|++++|+.+.. ...+.++++|++|.++++++++.+
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~ 76 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD-------------VNVSDHFKIDVTNEEEVKEAVEKTT 76 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C-------------TTSSEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc-------------cCceeEEEecCCCHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999965422 135678999999999999998865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||+.... ...++++..+++|+.|+.++++++.. .+. ++||++||...+.
T Consensus 77 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~---------- 145 (269)
T 3vtz_A 77 KKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGH-GSIINIASVQSYA---------- 145 (269)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS----------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEECchhhcc----------
Confidence 789999999986432 12334567899999999999888643 343 4999999988764
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCC---------CCChHHHHHHHHHcCCCeEEEec
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGR---------PDMAYFSFTRNILQGKPITVYRG 301 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 301 (421)
+......|+.||.+.+.+++.++.++ +|++++|+||.|.++... ...........+....
T Consensus 146 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 216 (269)
T 3vtz_A 146 --ATKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQH------- 216 (269)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHS-------
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcC-------
Confidence 22456789999999999999999887 899999999999986211 0001112222222211
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
....+.+++|+|++++.++........|+++++.+|..
T Consensus 217 -----p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 254 (269)
T 3vtz_A 217 -----PMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGGLL 254 (269)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -----CCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCCcc
Confidence 22347789999999999998765667899999998753
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=219.37 Aligned_cols=230 Identities=13% Similarity=0.096 Sum_probs=171.7
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|+||||||+||||++++++|+++|++|++++|+.+. ....... ...++.++++|++|.++++++++.+
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDA----AVRVANE--IGSKAFGVRVDVSSAKDAESMVEKTT 96 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHH--HCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHH--hCCceEEEEecCCCHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999985421 1111111 2457899999999999999998865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++. +.+ .++||++||...+.
T Consensus 97 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~---------- 165 (277)
T 4dqx_A 97 AKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNG-GGSIINTTSYTATS---------- 165 (277)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT-CEEEEEECCGGGTS----------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhCc----------
Confidence 789999999986432 2334556789999999999888874 333 24999999988763
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC----CCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGR----PDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+..+...|+.||.+.+.+++.++.++ ||++++|+||.|.++... ...........+....
T Consensus 166 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~----------- 232 (277)
T 4dqx_A 166 --AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARA----------- 232 (277)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTS-----------
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcC-----------
Confidence 22456789999999999999999874 899999999999886200 0000111111122222
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
....+.+++|+|++++.++........|+++++.+|..++
T Consensus 233 -~~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 233 -VMDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGGSSIG 272 (277)
T ss_dssp -TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSSSC
T ss_pred -cccCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCchhhh
Confidence 2234778999999999999876556789999999886543
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=219.73 Aligned_cols=230 Identities=12% Similarity=0.060 Sum_probs=168.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC-CCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN-FNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++|+||||||+|+||++++++|+++|++|++++| +.+. ....... .....++.++.+|++|.+++.++++.+
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDE----ANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSA 79 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH----HHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHH----HHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 367899999999999999999999999999999998 3221 1111111 112356889999999999999988764
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+..++||++||...+.
T Consensus 80 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~--------- 150 (261)
T 1gee_A 80 IKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI--------- 150 (261)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS---------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC---------
Confidence 689999999986431 23344567899999999988887643 33134999999987652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.++...|+.||.+.+.+++.++.++ |+++++++||.|++|..............+....+ .
T Consensus 151 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~ 215 (261)
T 1gee_A 151 ---PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIP------------M 215 (261)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCT------------T
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcCC------------C
Confidence 22456789999999999999998774 89999999999999743210000122222222211 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..+++++|+|++++.++........|+++++.++..
T Consensus 216 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 216 GYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCCcc
Confidence 247899999999999987654456789999988754
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=220.41 Aligned_cols=241 Identities=16% Similarity=0.129 Sum_probs=172.8
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC---------CChhHHHH-HHHhhcCCceEEEEcccCCHH
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY---------YDPSLKKA-RKALLNNHGVFVIEGDINDAK 155 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~-~~~~~~~~~v~~~~~Dl~d~~ 155 (421)
.++++|++|||||+|+||.+++++|+++|++|++++|+.+. ........ ........++.++.+|++|.+
T Consensus 7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 7 GKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 34789999999999999999999999999999999985321 11111111 111223467899999999999
Q ss_pred HHHHHhhcc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccC
Q 043169 156 LLAKLFDAV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYG 222 (421)
Q Consensus 156 ~~~~~~~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g 222 (421)
+++++++.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++. +.+..++||++||...+.
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 166 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK 166 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence 999998864 689999999986542 2344567889999999999988863 333234999999988753
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCe-EE
Q 043169 223 LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPI-TV 298 (421)
Q Consensus 223 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~ 298 (421)
..+....|+.||.+.+.+++.++.++ ||++++|+||.|.+|..... ............... ..
T Consensus 167 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~~~ 233 (277)
T 3tsc_A 167 ------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGD-MVTAVGQAMETNPQLSHV 233 (277)
T ss_dssp ------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHH-HHHHHHHHHHTCGGGTTT
T ss_pred ------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccch-hhhhhhhcccccHHHHHH
Confidence 22456789999999999999999884 89999999999998743211 011111111111100 00
Q ss_pred EecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 299 YRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 299 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
. ...... -+.+++|+|++++.++........|+++++.+|.
T Consensus 234 ~---~~~~p~-r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 234 L---TPFLPD-WVAEPEDIADTVCWLASDESRKVTAAQIPVDQGS 274 (277)
T ss_dssp T---CCSSSC-SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred h---hhccCC-CCCCHHHHHHHHHHHhCccccCCcCCEEeeCCCc
Confidence 0 011111 3889999999999999876667889999998774
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=220.36 Aligned_cols=230 Identities=14% Similarity=0.080 Sum_probs=166.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc---
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA--- 163 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~--- 163 (421)
++++|+++||||+|+||++++++|+++|++|++++|+.+..+...+... ....++.++.+|++|.++++++++.
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 94 (273)
T 1ae1_A 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR---EKGLNVEGSVCDLLSRTERDKLMQTVAH 94 (273)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999996432211111111 1235788999999999999888864
Q ss_pred ---cCCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 164 ---VAFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 164 ---~~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
-++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 95 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~---------- 163 (273)
T 1ae1_A 95 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQN-GNVIFLSSIAGFS---------- 163 (273)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-EEEEEECCGGGTS----------
T ss_pred HcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcCHhhcC----------
Confidence 2689999999986432 2334566789999999999999873 3443 4999999988764
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCh----HHHHHHHHHcCCCeEEEecCCCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMA----YFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
..++...|+.||.+.+.+++.++.+. |+++++|+||.+++|....... ...+...+....+
T Consensus 164 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p---------- 231 (273)
T 1ae1_A 164 --ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP---------- 231 (273)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST----------
T ss_pred --CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCC----------
Confidence 22356789999999999999998874 8999999999999984321100 0111222222111
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
...+.+++|+|++++.++........|+++++.+|..
T Consensus 232 --~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 232 --MGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFT 268 (273)
T ss_dssp --TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred --CCCCcCHHHHHHHHHHHhCccccCcCCCEEEECCCcc
Confidence 1237789999999999987654556799999988753
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=219.91 Aligned_cols=226 Identities=15% Similarity=0.100 Sum_probs=170.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++|+||||||+||||.+++++|+++|++|++++|+... ........ .....++.++.+|++|.++++++++.+
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~ 101 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAG---AADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVI 101 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChH---HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999884321 11111111 112457899999999999999998865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 102 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~---------- 170 (269)
T 4dmm_A 102 ERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRS-GRIINIASVVGEM---------- 170 (269)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCHHHHH----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECchhhcC----------
Confidence 789999999986432 2344567889999999999998873 3343 4999999977542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
..+....|+.||.+.+.+++.++.+ +||++++|+||.|.++.... .....+....+ ..
T Consensus 171 --~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-----~~~~~~~~~~p------------~~ 231 (269)
T 4dmm_A 171 --GNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE-----LAAEKLLEVIP------------LG 231 (269)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH-----HHHHHHGGGCT------------TS
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc-----ccHHHHHhcCC------------CC
Confidence 2245678999999999999999887 48999999999999874431 11122222221 22
Q ss_pred ecccHHHHHHHHHHhhhc-CCCCCCceEEEecCCCcc
Q 043169 310 DFTYIDDIVKGCLGSLDT-SAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~-~~~~~~~~~~~i~~~~~~ 345 (421)
.+.+++|+|++++.++.. ......|+++++.+|..+
T Consensus 232 r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 232 RYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM 268 (269)
T ss_dssp SCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTSCC
T ss_pred CCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCeec
Confidence 477899999999999987 334567999999887644
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=219.78 Aligned_cols=229 Identities=15% Similarity=0.136 Sum_probs=170.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC-CCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF-NNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++|+|+||||+||||++++++|+++|++|++++|+ .+..+....... ....++.++.+|++|+++++++++.+
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMR---ADGGDAAFFAADLATSEACQQLVDEFV 80 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHH---HTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHH---hcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999997 433222222111 12357899999999999999998854
Q ss_pred ----CCcEEEEcccc-cCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cC----CCCeEEEEccccccCCCCCC
Q 043169 165 ----AFTHVMHLAAQ-AGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----AN----PQPSIVWASSSSVYGLNENV 227 (421)
Q Consensus 165 ----~~d~vi~~Ag~-~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~----~~~riV~~SS~~v~g~~~~~ 227 (421)
++|+||||||. ... ....++++..+++|+.|+.++++++.+ .+ ..++||++||...+..
T Consensus 81 ~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---- 156 (258)
T 3afn_B 81 AKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG---- 156 (258)
T ss_dssp HHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC----
T ss_pred HHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC----
Confidence 67999999997 321 112234567899999999998887632 11 1149999999876521
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 228 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
..++...|+.||.+.+.+++.++.+. |+++++++||.++++..... ...+...+..+.+
T Consensus 157 -------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~--------- 218 (258)
T 3afn_B 157 -------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK--TQDVRDRISNGIP--------- 218 (258)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC--CHHHHHHHHTTCT---------
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc--CHHHHHHHhccCC---------
Confidence 12356789999999999999998775 89999999999999854321 1233444444332
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCC-CCCceEEEecCCC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAG-PAPYRIFNLGNTS 343 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~~~~i~~~~ 343 (421)
...+++++|+|++++.++..... ...|++|++.++.
T Consensus 219 ---~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 219 ---MGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ 255 (258)
T ss_dssp ---TCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred ---CCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence 23588999999999999876432 4568999998865
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=229.17 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=176.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcc-cCCHHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD-INDAKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D-l~d~~~~~~~~~~~~~d 167 (421)
.+|+|+||||||+||++++++|+++|++|++++|+.+... ........++.++.+| ++|.+++.++++++ |
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~------~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~--d 75 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI------AEELQAIPNVTLFQGPLLNNVPLMDTLFEGA--H 75 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH------HHHHHTSTTEEEEESCCTTCHHHHHHHHTTC--S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh------HHHHhhcCCcEEEECCccCCHHHHHHHHhcC--C
Confidence 4688999999999999999999999999999999765320 0111122478999999 99999999999987 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEcccc--ccCCCCCCCCCCCCCCCCCCChHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSS--VYGLNENVPFSEADRTDQPASLYAA 244 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~--v~g~~~~~~~~e~~~~~~~~~~Y~~ 244 (421)
+||||++... .+.|..+ .+++++|++.+ ++ +||++||.. .|+. .+...|+.
T Consensus 76 ~Vi~~a~~~~-----------~~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~~~~~~~~-------------~~~~~y~~ 129 (352)
T 1xgk_A 76 LAFINTTSQA-----------GDEIAIG-KDLADAAKRAGTIQ-HYIYSSMPDHSLYGP-------------WPAVPMWA 129 (352)
T ss_dssp EEEECCCSTT-----------SCHHHHH-HHHHHHHHHHSCCS-EEEEEECCCGGGTSS-------------CCCCTTTH
T ss_pred EEEEcCCCCC-----------cHHHHHH-HHHHHHHHHcCCcc-EEEEeCCccccccCC-------------CCCccHHH
Confidence 9999997531 1357777 99999999988 65 999999975 3421 23467999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHH-HHHcCCCeEEEecCCCCcceeecccH-HHHHHHHH
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTR-NILQGKPITVYRGKNHVDLARDFTYI-DDIVKGCL 322 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~v-~Dva~a~~ 322 (421)
+|.++|.++++ .|++++++||+ +||++..... . .++. .....+.... ..+++++..++++|+ +|+|++++
T Consensus 130 sK~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~-~-~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~v~~Dva~ai~ 201 (352)
T 1xgk_A 130 PKFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLP-Y-PLFQMELMPDGTFEW-HAPFDPDIPLPWLDAEHDVGPALL 201 (352)
T ss_dssp HHHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSS-C-SSCBEEECTTSCEEE-EESSCTTSCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHH----cCCCEEEEecc-eecCCchhcc-c-ccccccccCCCceEE-eeccCCCCceeeEecHHHHHHHHH
Confidence 99999999876 48999999987 6887543211 0 0000 0011222211 112457788999999 89999999
Q ss_pred HhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceec
Q 043169 323 GSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE 368 (421)
Q Consensus 323 ~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~ 368 (421)
.+++.+.....+++||+++ +.+|+.|+++.+.+.+|.+.+...+|
T Consensus 202 ~~l~~~~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp 246 (352)
T 1xgk_A 202 QIFKDGPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVP 246 (352)
T ss_dssp HHHHHCHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECS
T ss_pred HHHhCCchhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECC
Confidence 9998641112478999995 67999999999999999876544444
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=220.13 Aligned_cols=230 Identities=13% Similarity=0.097 Sum_probs=173.7
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.++++|+||||||+|+||++++++|+++|++|++++|+.+..+....+.. ....++.++++|++|.++++++++.+
T Consensus 28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 104 (276)
T 3r1i_A 28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIA---GVGGKALPIRCDVTQPDQVRGMLDQMT 104 (276)
T ss_dssp GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHH---HTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999997654433332221 12357899999999999999999865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++.+ .+..++||++||...+...
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~-------- 176 (276)
T 3r1i_A 105 GELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN-------- 176 (276)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC--------
Confidence 789999999986542 23344567889999999999988743 3322489999998764211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
...+...|+.||.+.+.+++.++.+ +||++++|+||.|.++..... ......+....+ ..
T Consensus 177 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~---~~~~~~~~~~~p------------~~ 239 (276)
T 3r1i_A 177 --IPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL---ADYHALWEPKIP------------LG 239 (276)
T ss_dssp --CSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG---GGGHHHHGGGST------------TS
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc---hHHHHHHHhcCC------------CC
Confidence 1124578999999999999999988 589999999999998744321 112222222221 12
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+.+++|+|++++.++........|+++++.+|.
T Consensus 240 r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 273 (276)
T 3r1i_A 240 RMGRPEELTGLYLYLASAASSYMTGSDIVIDGGY 273 (276)
T ss_dssp SCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCcCHHHHHHHHHHHcCccccCccCcEEEECcCc
Confidence 3678899999999999876567789999998775
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=219.16 Aligned_cols=229 Identities=11% Similarity=0.056 Sum_probs=171.3
Q ss_pred CCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.+++|+|+||||+ ||||+++++.|+++|++|++++|+.+ .++........ ...+.++.+|++|.++++++++.+
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~ 78 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQE---LNSPYVYELDVSKEEHFKSLYNSV 78 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHh---cCCcEEEEcCCCCHHHHHHHHHHH
Confidence 3678999999999 99999999999999999999999764 22222222221 124789999999999999988765
Q ss_pred -----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+... .++||++||...+.
T Consensus 79 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-------- 150 (275)
T 2pd4_A 79 KKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK-------- 150 (275)
T ss_dssp HHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS--------
T ss_pred HHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC--------
Confidence 68999999998643 223445668899999999999999976511 13999999977642
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.++...|+.||.+.+.+++.++.++ ||++++|+||.|.++..........+...+....+.
T Consensus 151 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----------- 215 (275)
T 2pd4_A 151 ----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPL----------- 215 (275)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT-----------
T ss_pred ----CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCc-----------
Confidence 12345789999999999999998875 899999999999987432211122333333222211
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+.+++|+|++++.++........|+.+++.++.
T Consensus 216 -~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg~ 250 (275)
T 2pd4_A 216 -RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 250 (275)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 12567899999999999765445678999998764
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-28 Score=225.27 Aligned_cols=230 Identities=14% Similarity=0.065 Sum_probs=172.1
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
..+++|+||||||+||||.++++.|+++|++|++++|+.+..+....... ....++.++.+|++|.++++++++.+
T Consensus 24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (270)
T 3ftp_A 24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFK---QAGLEGRGAVLNVNDATAVDALVESTL 100 (270)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH---HHTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEEeCCCHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999995432222211111 12357889999999999999998865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++. +.+ .++||++||...+.
T Consensus 101 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~---------- 169 (270)
T 3ftp_A 101 KEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR-GGRIVNITSVVGSA---------- 169 (270)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhCC----------
Confidence 789999999986432 2344566789999999999999874 233 24999999977642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
..++...|+.||.+.+.+++.++.+ .||++++|+||.|.++..... .......+.... ...
T Consensus 170 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~------------p~~ 233 (270)
T 3ftp_A 170 --GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGL--PQEQQTALKTQI------------PLG 233 (270)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHS--CHHHHHHHHTTC------------TTC
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhc--CHHHHHHHHhcC------------CCC
Confidence 2245678999999999999999987 489999999999988621100 011222222222 123
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
.+.+++|+|++++.++........|+++++.+|..+
T Consensus 234 r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 234 RLGSPEDIAHAVAFLASPQAGYITGTTLHVNGGMFM 269 (270)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred CCCCHHHHHHHHHHHhCCCcCCccCcEEEECCCccc
Confidence 478899999999999976655678999999987644
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=219.42 Aligned_cols=233 Identities=11% Similarity=0.008 Sum_probs=171.3
Q ss_pred cccCCCCCEEEEEcCCCh--hHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHh
Q 043169 84 QIHRSGGMSVLVTGAAGF--VGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 84 ~~~~~~~k~vlITG~sG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
.+.++++|++|||||+|+ ||.++++.|+++|++|++++|+.. ..+..........++.++.+|++|.+++++++
T Consensus 25 ~~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 100 (293)
T 3grk_A 25 QSGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA----LKKRVEPLAEELGAFVAGHCDVADAASIDAVF 100 (293)
T ss_dssp --CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHH----HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHH
T ss_pred ccccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHHHHhcCCceEEECCCCCHHHHHHHH
Confidence 344578999999999977 999999999999999999998531 11111111111246889999999999999998
Q ss_pred hcc-----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCC
Q 043169 162 DAV-----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENV 227 (421)
Q Consensus 162 ~~~-----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~ 227 (421)
+.+ ++|+||||||+... ..+.++++..+++|+.|+.++++++.+... .++||++||...+.
T Consensus 101 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----- 175 (293)
T 3grk_A 101 ETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK----- 175 (293)
T ss_dssp HHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS-----
T ss_pred HHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc-----
Confidence 865 78999999998652 223445667899999999999999875432 24999999987753
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 228 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
..+....|+.||.+.+.+++.++.+ +||++++|+||.|.++..............+....+
T Consensus 176 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p--------- 239 (293)
T 3grk_A 176 -------VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAP--------- 239 (293)
T ss_dssp -------BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHST---------
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCC---------
Confidence 2245688999999999999999987 489999999999998743322222233333333222
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
...+..++|+|++++.++........|+++++.+|..
T Consensus 240 ---~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (293)
T 3grk_A 240 ---LRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSGYH 276 (293)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ---CCCCCCHHHHHHHHHHHcCccccCCcceEEEECCCcc
Confidence 1236678999999999998765578899999998764
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=211.91 Aligned_cols=227 Identities=13% Similarity=0.059 Sum_probs=165.3
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.+.++|+||||||+||||+++++.|+++|++|++++|+.+. .+.... ....++.++.+|++|.+++.+++++.
T Consensus 9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (249)
T 3f9i_A 9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEK----LKSLGN--ALKDNYTIEVCNLANKEECSNLISKT 82 (249)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH--HHCSSEEEEECCTTSHHHHHHHHHTC
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHHH--HhccCccEEEcCCCCHHHHHHHHHhc
Confidence 345789999999999999999999999999999999995421 111111 12357899999999999999999876
Q ss_pred -CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+. ++||++||...+. .
T Consensus 83 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~------------~ 149 (249)
T 3f9i_A 83 SNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRY-GRIINISSIVGIA------------G 149 (249)
T ss_dssp SCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCCCC--------------C
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEEccHHhcc------------C
Confidence 68999999998653 23456678899999999999988773 3332 4999999987753 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.++...|+.||.+.+.+++.++.+ .|+++++++||.|.++...... ......+..+. ....+.
T Consensus 150 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~------------~~~~~~ 215 (249)
T 3f9i_A 150 NPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLN--EKQREAIVQKI------------PLGTYG 215 (249)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CC--HHHHHHHHHHC------------TTCSCB
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccC--HHHHHHHHhcC------------CCCCCc
Confidence 245678999999999999999877 4899999999999987433211 12222222222 123578
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+++|+|++++.++........|+++++.+|..
T Consensus 216 ~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 216 IPEDVAYAVAFLASNNASYITGQTLHVNGGML 247 (249)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred CHHHHHHHHHHHcCCccCCccCcEEEECCCEe
Confidence 89999999999998765567899999988753
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=222.23 Aligned_cols=228 Identities=17% Similarity=0.130 Sum_probs=168.2
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+++++|+||||||+|+||++++++|+++|++|++++|+.. ...+...... ....++.++.+|++|.++++++++.+
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 93 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS---KAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKA 93 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCch---HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 3478999999999999999999999999999999998321 1111111111 12457889999999999999988754
Q ss_pred -----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhc---CCCCeEEEEcccccc-CCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSA---NPQPSIVWASSSSVY-GLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~---~~~~riV~~SS~~v~-g~~~~~~~~e 231 (421)
++|+||||||.... ....++++..+++|+.|+.++++++.+. + ++||++||...+ ..
T Consensus 94 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~iv~~sS~~~~~~~-------- 163 (274)
T 1ja9_A 94 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG--GRIILTSSIAAVMTG-------- 163 (274)
T ss_dssp HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE--EEEEEECCGGGTCCS--------
T ss_pred HHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CEEEEEcChHhccCC--------
Confidence 67999999998643 1223345678999999999999988664 3 399999998876 31
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC-----------CChHHHHHHHHHcCCCeE
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRP-----------DMAYFSFTRNILQGKPIT 297 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~-----------~~~~~~~~~~~~~~~~~~ 297 (421)
.++...|+.||.+.|.+++.+++++ |+++++++||.++++.... ......+...+..+
T Consensus 164 ----~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 235 (274)
T 1ja9_A 164 ----IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM---- 235 (274)
T ss_dssp ----CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT----
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhc----
Confidence 1345789999999999999998875 8999999999998862110 00001122222222
Q ss_pred EEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 298 VYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 298 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.....+++++|+|++++.++..+.....|++|++++|
T Consensus 236 --------~~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 236 --------NPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp --------STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --------CCCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 1234589999999999999986544457899999876
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=215.60 Aligned_cols=227 Identities=16% Similarity=0.121 Sum_probs=172.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+++||++|||||+++||.++++.|+++|++|++.+|+.. ++..+.. .....++.++.+|++|+++++++++.-++
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~---~~~g~~~~~~~~Dv~d~~~v~~~~~~g~i 80 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDII---AKDGGNASALLIDFADPLAAKDSFTDAGF 80 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHH---HHTTCCEEEEECCTTSTTTTTTSSTTTCC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHH---HHhCCcEEEEEccCCCHHHHHHHHHhCCC
Confidence 589999999999999999999999999999999999643 1222221 12346789999999999999998887789
Q ss_pred cEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 167 THVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 167 d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
|++|||||+... +.+.++++..+++|+.|+.++.+++. +.+..++||++||...+. ..+.
T Consensus 81 DiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~------------g~~~ 148 (247)
T 4hp8_A 81 DILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ------------GGIR 148 (247)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCSS
T ss_pred CEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC------------CCCC
Confidence 999999998643 23455678899999999988888753 333335999999987542 2234
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
...|+.||.+...+++.++.+ +||+|++|.||.|..|-......-....+.+.+..|.. -+..++
T Consensus 149 ~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~Plg------------R~g~pe 216 (247)
T 4hp8_A 149 VPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIPAG------------RWGHSE 216 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTS------------SCBCTH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCC------------CCcCHH
Confidence 578999999999999999988 48999999999998763210000012233344443321 145679
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
|+|.+++.++....+...|+++.+.+|
T Consensus 217 eiA~~v~fLaSd~a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 217 DIAGAAVFLSSAAADYVHGAILNVDGG 243 (247)
T ss_dssp HHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHhCchhcCCcCCeEEECcc
Confidence 999999999987767788999999876
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-28 Score=224.54 Aligned_cols=228 Identities=14% Similarity=0.075 Sum_probs=168.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+||||.+++++|+++|++|++++|+.+..+...... .....++.++.+|++|.++++++++.+
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l---~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGL---RAAGHDVDGSSCDVTSTDEVHAAVAAAVER 98 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---HTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---HhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999643222221111 112467899999999999999988865
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh------cCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS------ANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~------~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||..... ...++++..+++|+.|+.++++++.+ .+. ++||++||...+.
T Consensus 99 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~-g~iV~isS~~~~~---------- 167 (279)
T 3sju_A 99 FGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGW-GRIVNIASTGGKQ---------- 167 (279)
T ss_dssp HCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTC-EEEEEECCGGGTS----------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCC-cEEEEECChhhcc----------
Confidence 789999999986532 23344567899999999999998754 332 4999999987652
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC---------CChHHHHHHHHHcCCCeEEEe
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP---------DMAYFSFTRNILQGKPITVYR 300 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 300 (421)
+......|+.||.+.+.+++.++.+ +||++++|+||.|.+|.... ..........+....
T Consensus 168 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 239 (279)
T 3sju_A 168 --GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKI------ 239 (279)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTC------
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcC------
Confidence 2245678999999999999999988 58999999999998862110 001112222222222
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
....+.+++|+|++++.++........|+++++.+|.
T Consensus 240 ------p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 240 ------PLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGGL 276 (279)
T ss_dssp ------TTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTTC
T ss_pred ------CCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 1234788999999999999876556789999998774
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=217.61 Aligned_cols=234 Identities=12% Similarity=0.037 Sum_probs=164.5
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|+||||||+|+||++++++|+++|++|++++|+.+.. ..... ....++.++.+|++|.++++++++.+
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGA----ERVAG--EIGDAALAVAADISKEADVDAAVEAAL 78 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHH--HHCTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHH----HHHHH--HhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999954321 11111 12457899999999999999998865
Q ss_pred ----CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHHhcC-------CCCeEEEEccccccCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACKSAN-------PQPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~~~-------~~~riV~~SS~~v~g~~~~~~ 228 (421)
++|+||||||..... ...++++..+++|+.|+.++++++.+.. ...+||++||...+.
T Consensus 79 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~------ 152 (261)
T 3n74_A 79 SKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR------ 152 (261)
T ss_dssp HHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS------
T ss_pred HhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC------
Confidence 789999999986421 1334556789999999988888774221 123799999987652
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.+....|+.||.+.+.+++.++.+ +|+++++++||.+.++..... .... .......+ ...
T Consensus 153 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~------~~~~-~~~~~~~~---~~~ 216 (261)
T 3n74_A 153 ------PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTF------MGED-SEEIRKKF---RDS 216 (261)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhh------cccC-cHHHHHHH---hhc
Confidence 2245677999999999999999988 489999999999998743211 0000 00000011 112
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCH
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTV 347 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~ 347 (421)
.....+++++|+|++++.++........|+++++.+|..++.
T Consensus 217 ~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 217 IPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDGGRSIGG 258 (261)
T ss_dssp CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTC--
T ss_pred CCcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecCCcccCC
Confidence 233458899999999999997665567899999998876654
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-27 Score=215.36 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=167.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+||||++++++|+++|++|++++|+.+. ..... .. ...++.++.+|++|.++++++++.+
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~-~~-~~~~~~~~~~D~~d~~~v~~~~~~~~~ 82 (263)
T 3ak4_A 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMA----AQAVV-AG-LENGGFAVEVDVTKRASVDAAMQKAID 82 (263)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHH-HT-CTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHH-HH-HhcCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999995321 11111 11 1236889999999999999988854
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+..++||++||...+.
T Consensus 83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 151 (263)
T 3ak4_A 83 ALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV----------- 151 (263)
T ss_dssp HHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-----------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc-----------
Confidence 689999999976432 22345667899999999999888754 23124999999987652
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCh----H-----HHHHHHHHcCCCeEEEec
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMA----Y-----FSFTRNILQGKPITVYRG 301 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~ 301 (421)
..++...|+.||.+.+.+++.++.+. |+++++|+||.|+++....... . ......+....
T Consensus 152 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 223 (263)
T 3ak4_A 152 -GAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLT------- 223 (263)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHTC-------
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhcC-------
Confidence 12346789999999999999998874 8999999999999873210000 0 11111111111
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
....+++++|+|++++.++........|++|++.++..
T Consensus 224 -----p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 224 -----PLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGVR 261 (263)
T ss_dssp -----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred -----CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcCEe
Confidence 12348899999999999998764456789999988753
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=218.49 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=168.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||++++++|+++|++|++++|+.+..+....... ......++.++.+|++|.++++++++.+
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 88 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVL-ETAPDAEVLTTVADVSDEAQVEAYVTATTE 88 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-hhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999996532221111111 1111457899999999999999988765
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~---------- 157 (267)
T 1iy8_A 89 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGS-GMVVNTASVGGIR---------- 157 (267)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTS----------
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEEcchhhcc----------
Confidence 68999999998643 1233456678999999988766655 44443 4999999987652
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC------CChHHHHHHHHHcCCCeEEEecCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP------DMAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
..++...|+.||.+.+.+++.++.+ +||++++|+||.|+++.... ..........+....
T Consensus 158 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 226 (267)
T 1iy8_A 158 --GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN--------- 226 (267)
T ss_dssp --BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC---------
T ss_pred --CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccC---------
Confidence 1234678999999999999999877 48999999999999862110 000010111122111
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
....+.+++|+|++++.++........|+.+++.+|...
T Consensus 227 ---p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~~ 265 (267)
T 1iy8_A 227 ---PSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSA 265 (267)
T ss_dssp ---TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTT
T ss_pred ---CCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCccc
Confidence 122478999999999999976645677999999887543
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=221.63 Aligned_cols=236 Identities=16% Similarity=0.060 Sum_probs=169.9
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.+++|++|||||+|+||.+++++|+++|++|++++|+.+..+ ...... ....++.++++|++|.++++++++.+
T Consensus 24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~----~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (283)
T 3v8b_A 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVE----EVADEIVGAGGQAIALEADVSDELQMRNAVRDL 99 (283)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH----HHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999543221 111111 12357899999999999999999875
Q ss_pred -----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||+... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 100 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~Iv~isS~~~~~~------- 171 (283)
T 3v8b_A 100 VLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGG-GAIVVVSSINGTRT------- 171 (283)
T ss_dssp HHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCSBTTTB-------
T ss_pred HHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-ceEEEEcChhhccC-------
Confidence 78999999998543 2233455678999999999999988 44443 49999999876421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
.+.++...|+.||.+.+.+++.++.+ +||++++|+||.|.++.......... .....+.... .....
T Consensus 172 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~----~~~~~~~~~~---~~~~p 241 (283)
T 3v8b_A 172 ---FTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHE----EETAIPVEWP---KGQVP 241 (283)
T ss_dssp ---CCSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCH----HHHSCCCBCT---TCSCG
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccc----hhhhhhhhhh---hhcCc
Confidence 02235678999999999999999988 47999999999999875432110000 0000001000 01111
Q ss_pred e--eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 A--RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~--~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
. ..+..++|+|++++.++........|+++++.+|.
T Consensus 242 ~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 279 (283)
T 3v8b_A 242 ITDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDGGQ 279 (283)
T ss_dssp GGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred cccCCCCCHHHHHHHHHHHcCccccCCcCCEEEECcCc
Confidence 1 34678999999999999876567789999998764
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=219.96 Aligned_cols=228 Identities=19% Similarity=0.129 Sum_probs=165.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCce-EEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGV-FVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++|+|+||||+|+||++++++|+++|++|++++|+.+.. +..... . ..++ .++.+|++|.++++++++.+
T Consensus 8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~----~~~~~~-~-~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (254)
T 2wsb_A 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAAL----DRAAQE-L-GAAVAARIVADVTDAEAMTAAAAEAE 81 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHH-H-GGGEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHH-h-cccceeEEEEecCCHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999954211 111111 1 2356 88999999999999988653
Q ss_pred ---CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+. ++||++||...+...
T Consensus 82 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~--------- 151 (254)
T 2wsb_A 82 AVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGA-GAIVNLGSMSGTIVN--------- 151 (254)
T ss_dssp HHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC---------
T ss_pred hhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEecchhccCC---------
Confidence 6899999999864321 22334678999999977777765 34443 499999998876321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+..+...|+.||.+.+.+++.++.++ |+++++++||.++++........+.+...+....+ ...
T Consensus 152 -~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 218 (254)
T 2wsb_A 152 -RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTP------------MGR 218 (254)
T ss_dssp -SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTST------------TSS
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcCC------------CCC
Confidence 11234789999999999999998875 89999999999998732100000122233333221 134
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+++++|+|++++.++........|+++++.++.
T Consensus 219 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 219 CGEPSEIAAAALFLASPAASYVTGAILAVDGGY 251 (254)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCHHHHHHHHHHHhCcccccccCCEEEECCCE
Confidence 789999999999998765445678999998763
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=220.12 Aligned_cols=230 Identities=13% Similarity=0.060 Sum_probs=168.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+.+|+|+||||+|+||.+++++|+++|++|++++|+.... .+..... .....++.++.+|++|.++++++++.+
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 81 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTA---METMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMS 81 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHH---HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999998854321 1111111 112357999999999999999999865
Q ss_pred ---CCcEEEEcccccC--c----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAG--V----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~--~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||+.. . ..+.++++..+++|+.|+.++++++ ++.+. ++||++||...++.
T Consensus 82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~iss~~~~~~-------- 152 (264)
T 3i4f_A 82 HFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNF-GRIINYGFQGADSA-------- 152 (264)
T ss_dssp HHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTTGGGC--------
T ss_pred HhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC-CeEEEEeechhccc--------
Confidence 7899999999421 1 1233455678999999999999988 45553 49999999854421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
....+...|+.||.+.+.+++.++.+ +|+++++|+||.|+++..... ........... ...
T Consensus 153 --~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~------------~p~ 216 (264)
T 3i4f_A 153 --PGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEAT--IQEARQLKEHN------------TPI 216 (264)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCC--HHHHHHC-------------------
T ss_pred --CCCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhc--cHHHHHHHhhc------------CCC
Confidence 12235678999999999999999987 589999999999999854321 22222111111 112
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
..+.+++|+|++++.++........|+++++.+|-..
T Consensus 217 ~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG~~~ 253 (264)
T 3i4f_A 217 GRSGTGEDIARTISFLCEDDSDMITGTIIEVTGAVDV 253 (264)
T ss_dssp -CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCSCCC
T ss_pred CCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCceee
Confidence 3478899999999999987655678999999987653
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=225.26 Aligned_cols=241 Identities=15% Similarity=0.184 Sum_probs=176.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+|+||||||+||++++++|+++|++|++++|+.+...+..... .......+++++.+|++|++++.++++++ |+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~d~~~l~~~~~~~--d~v 80 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQM-LLYFKQLGAKLIEASLDDHQRLVDALKQV--DVV 80 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHH-HHHHHTTTCEEECCCSSCHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHH-HHHHHhCCeEEEeCCCCCHHHHHHHHhCC--CEE
Confidence 578999999999999999999999999999999765432222111 11123468999999999999999999976 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
||+||.... ..|+.++.+++++|++.+ ++ |||+ | +||...... +....+....| .+|.+
T Consensus 81 i~~a~~~~~-----------~~~~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~~~~---~~~~~p~~~~y-~sK~~ 140 (313)
T 1qyd_A 81 ISALAGGVL-----------SHHILEQLKLVEAIKEAGNIK-RFLP-S---EFGMDPDIM---EHALQPGSITF-IDKRK 140 (313)
T ss_dssp EECCCCSSS-----------STTTTTHHHHHHHHHHSCCCS-EEEC-S---CCSSCTTSC---CCCCSSTTHHH-HHHHH
T ss_pred EECCccccc-----------hhhHHHHHHHHHHHHhcCCCc-eEEe-c---CCcCCcccc---ccCCCCCcchH-HHHHH
Confidence 999997532 137788999999999998 65 8885 3 454322111 11111224568 99999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHH----HHcCCCeEEEecCCCCcceeecccHHHHHHHHHHh
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRN----ILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGS 324 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 324 (421)
+|.++++ .|++++++||+.++|+.... +... ...++.+.++ ++++..++++|++|+|++++.+
T Consensus 141 ~e~~~~~----~g~~~~ilrp~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~~~Dva~~~~~~ 207 (313)
T 1qyd_A 141 VRRAIEA----ASIPYTYVSSNMFAGYFAGS------LAQLDGHMMPPRDKVLIY---GDGNVKGIWVDEDDVGTYTIKS 207 (313)
T ss_dssp HHHHHHH----TTCCBCEEECCEEHHHHTTT------SSCTTCCSSCCSSEECCB---TTSCSEEEEECHHHHHHHHHHH
T ss_pred HHHHHHh----cCCCeEEEEeceeccccccc------cccccccccCCCCeEEEe---CCCCceEEEEEHHHHHHHHHHH
Confidence 9988764 68999999999998742210 0000 1123333333 5678899999999999999999
Q ss_pred hhcCCCCCCceEEEecCC-CccCHHHHHHHHHHHhCCccccceec
Q 043169 325 LDTSAGPAPYRIFNLGNT-SPVTVPKLVNILERHLKVKAKKNVIE 368 (421)
Q Consensus 325 l~~~~~~~~~~~~~i~~~-~~~t~~el~~~l~~~~g~~~~~~~~~ 368 (421)
+..+ ...++.|++.++ +.+|+.|+++.+.+.+|.+.+....|
T Consensus 208 l~~~--~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 250 (313)
T 1qyd_A 208 IDDP--QTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250 (313)
T ss_dssp TTCG--GGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred HhCc--ccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence 9876 234677888764 68999999999999999876554443
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=217.11 Aligned_cols=209 Identities=14% Similarity=0.055 Sum_probs=160.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
+++|+|+||||+|+||++++++|+++|+ +|++++|+.+..+... ..++.++.+|++|.+++.++++++
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~- 85 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA---------YKNVNQEVVDFEKLDDYASAFQGH- 85 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG---------GGGCEEEECCGGGGGGGGGGGSSC-
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc---------cCCceEEecCcCCHHHHHHHhcCC-
Confidence 4678999999999999999999999999 9999999876544321 136889999999999999998865
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
|+||||||..... .+++..+++|+.++.++++++++.+.+ +||++||.++|+ .+...|+.+
T Consensus 86 -d~vi~~ag~~~~~---~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~SS~~~~~--------------~~~~~Y~~s 146 (242)
T 2bka_A 86 -DVGFCCLGTTRGK---AGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSSKGADK--------------SSNFLYLQV 146 (242)
T ss_dssp -SEEEECCCCCHHH---HHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHH
T ss_pred -CEEEECCCccccc---CCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEccCcCCC--------------CCcchHHHH
Confidence 9999999975322 234678999999999999999988864 999999998874 234689999
Q ss_pred HHHHHHHHHHHHHHhCC-cEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHh
Q 043169 246 KKAGEEIAHTYNHIYGL-SITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGS 324 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi-~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 324 (421)
|.+.|.+++. .++ ++++||||.+|||.... .....+........+. ......+++++|+|++++.+
T Consensus 147 K~~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~dva~~~~~~ 213 (242)
T 2bka_A 147 KGEVEAKVEE----LKFDRYSVFRPGVLLCDRQES-RPGEWLVRKFFGSLPD--------SWASGHSVPVVTVVRAMLNN 213 (242)
T ss_dssp HHHHHHHHHT----TCCSEEEEEECCEEECTTGGG-SHHHHHHHHHHCSCCT--------TGGGGTEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHh----cCCCCeEEEcCceecCCCCCC-cHHHHHHHHhhcccCc--------cccCCcccCHHHHHHHHHHH
Confidence 9999998876 478 69999999999996432 1223333333332221 01123589999999999999
Q ss_pred hhcCCCCCCceEEEecC
Q 043169 325 LDTSAGPAPYRIFNLGN 341 (421)
Q Consensus 325 l~~~~~~~~~~~~~i~~ 341 (421)
+..+. .++.+++.+
T Consensus 214 ~~~~~---~~~~~~~~~ 227 (242)
T 2bka_A 214 VVRPR---DKQMELLEN 227 (242)
T ss_dssp HTSCC---CSSEEEEEH
T ss_pred HhCcc---ccCeeEeeH
Confidence 98762 245665543
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=228.14 Aligned_cols=244 Identities=13% Similarity=0.076 Sum_probs=175.2
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCC---ceEEEEcccCCHHHHHHHhh
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH---GVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~---~v~~~~~Dl~d~~~~~~~~~ 162 (421)
+++++|++|||||+||||+++++.|+++|++|++++|+.+..+........ ... ++.++.+|++|.++++++++
T Consensus 22 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~~~~Dv~d~~~v~~~~~ 98 (297)
T 1xhl_A 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILK---AGVPAEKINAVVADVTEASGQDDIIN 98 (297)
T ss_dssp -CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCGGGEEEEECCTTSHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCCCceEEEEecCCCCHHHHHHHHH
Confidence 347899999999999999999999999999999999964322221111111 122 68999999999999999887
Q ss_pred cc-----CCcEEEEcccccCch------hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCC
Q 043169 163 AV-----AFTHVMHLAAQAGVR------YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENV 227 (421)
Q Consensus 163 ~~-----~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~ 227 (421)
.+ ++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+ ++||++||...+...
T Consensus 99 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS~~~~~~~--- 173 (297)
T 1xhl_A 99 TTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGPQA--- 173 (297)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGSSSC---
T ss_pred HHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcCchhccCC---
Confidence 64 689999999975421 12344567899999999999888754 33 499999998775311
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC--Ch-----HHHHHHHHHcCCCeE
Q 043169 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD--MA-----YFSFTRNILQGKPIT 297 (421)
Q Consensus 228 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~--~~-----~~~~~~~~~~~~~~~ 297 (421)
.++...|+.||.+.+.+++.++.+ +||++++|+||.|.++..... .. ...+...+....
T Consensus 174 --------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 242 (297)
T 1xhl_A 174 --------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECI--- 242 (297)
T ss_dssp --------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTC---
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhcC---
Confidence 134578999999999999999876 589999999999998732110 00 001111111111
Q ss_pred EEecCCCCcceeecccHHHHHHHHHHhhhcC-CCCCCceEEEecCCCccCHHHHHHHHHHH
Q 043169 298 VYRGKNHVDLARDFTYIDDIVKGCLGSLDTS-AGPAPYRIFNLGNTSPVTVPKLVNILERH 357 (421)
Q Consensus 298 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~i~~~~~~t~~el~~~l~~~ 357 (421)
....+.+++|+|++++.++... .....|+++++.++......+.+..+.+.
T Consensus 243 ---------p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~ 294 (297)
T 1xhl_A 243 ---------PVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMSV 294 (297)
T ss_dssp ---------TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHHH
T ss_pred ---------CCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhhh
Confidence 1224789999999999998754 44677999999988766666655444443
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=218.79 Aligned_cols=227 Identities=12% Similarity=0.037 Sum_probs=167.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC-CCCCCChhHHHHHHHhhcCCceEEEEcccCCH----HHHHHHhh
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN-FNNYYDPSLKKARKALLNNHGVFVIEGDINDA----KLLAKLFD 162 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~----~~~~~~~~ 162 (421)
+++|++|||||+||||+++++.|+++|++|++++| +.+..+........ ....++.++.+|++|. ++++++++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNA--ARAGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHH--hcCCceEEEeccCCCccccHHHHHHHHH
Confidence 57899999999999999999999999999999998 43322111111111 1135789999999999 99988887
Q ss_pred cc-----CCcEEEEcccccCch----hhc-----------cCCchhhhhhHHHHHHHHHHHHhcCC--C------CeEEE
Q 043169 163 AV-----AFTHVMHLAAQAGVR----YAM-----------QNPHSYVHSNIAGLVTLLEACKSANP--Q------PSIVW 214 (421)
Q Consensus 163 ~~-----~~d~vi~~Ag~~~~~----~~~-----------~~~~~~~~~N~~g~~~l~~~~~~~~~--~------~riV~ 214 (421)
.+ ++|+||||||+.... ... ++++..+++|+.|+.++++++.+... . ++||+
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~ 166 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN 166 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence 65 689999999976432 122 44567899999999999999876421 1 49999
Q ss_pred EccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHH
Q 043169 215 ASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNIL 291 (421)
Q Consensus 215 ~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~ 291 (421)
+||...+. +.++...|+.||.+.+.+++.++.+. ||++++|+||.|++| .. ....+...+.
T Consensus 167 isS~~~~~------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~---~~~~~~~~~~ 230 (276)
T 1mxh_A 167 LCDAMTDL------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PA---MPQETQEEYR 230 (276)
T ss_dssp ECCGGGGS------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SS---SCHHHHHHHH
T ss_pred ECchhhcC------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-cc---CCHHHHHHHH
Confidence 99988763 22456789999999999999998874 899999999999998 22 1123333333
Q ss_pred cCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 292 QGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+. .+++.+++|+|++++.++........|+++++.++.
T Consensus 231 ~~~p~-----------~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 231 RKVPL-----------GQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 271 (276)
T ss_dssp TTCTT-----------TSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hcCCC-----------CCCCCCHHHHHHHHHHHhCccccCccCcEEEECCch
Confidence 32211 122789999999999999865445678999998774
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=216.94 Aligned_cols=236 Identities=16% Similarity=0.098 Sum_probs=172.9
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC--------ChhHHHHHHH-hhcCCceEEEEcccCCHHH
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY--------DPSLKKARKA-LLNNHGVFVIEGDINDAKL 156 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~ 156 (421)
.++++|++|||||+|+||.++++.|+++|++|++++|+.... .+........ .....++.++.+|++|.++
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 103 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDA 103 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 347899999999999999999999999999999999974321 1111111111 1234679999999999999
Q ss_pred HHHHhhcc-----CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccC
Q 043169 157 LAKLFDAV-----AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYG 222 (421)
Q Consensus 157 ~~~~~~~~-----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g 222 (421)
++++++.+ ++|+||||||..... .+.++++..+++|+.|+.++++++... +..++||++||...+.
T Consensus 104 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~ 183 (299)
T 3t7c_A 104 MQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR 183 (299)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc
Confidence 99988764 689999999986432 134456789999999999999987432 3234999999987652
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCh------------HHHHH
Q 043169 223 LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMA------------YFSFT 287 (421)
Q Consensus 223 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~------------~~~~~ 287 (421)
..+....|+.||.+.+.+++.++.++ ||++++|+||.|.+|....... ...+.
T Consensus 184 ------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (299)
T 3t7c_A 184 ------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQ 251 (299)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHH
T ss_pred ------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHH
Confidence 22456789999999999999999885 8999999999999885432100 00000
Q ss_pred HHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 288 RNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
....... .. ...+..++|+|++++.++........|+++++.+|..
T Consensus 252 ~~~~~~~----------~~-p~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~ 297 (299)
T 3t7c_A 252 VASRQMH----------VL-PIPYVEPADISNAILFLVSDDARYITGVSLPVDGGAL 297 (299)
T ss_dssp HHHHHHS----------SS-SCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHhhhhc----------cc-CcCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCCcc
Confidence 0000000 00 1347789999999999998765678899999988754
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-28 Score=223.73 Aligned_cols=233 Identities=10% Similarity=0.034 Sum_probs=173.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|++|||||+|+||.+++++|+++|++|++++|+.+..+........ ....++.++.+|++|.++++++++.+
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAG--ATGRRCLPLSMDVRAPPAVMAAVDQALK 101 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH--HHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999965432222222111 12467999999999999999988865
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.. .+ .++||++||...+.
T Consensus 102 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~----------- 169 (277)
T 4fc7_A 102 EFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDH-GGVIVNITATLGNR----------- 169 (277)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCSHHHH-----------
T ss_pred HcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhCC-----------
Confidence 78999999997543 223445678999999999999998742 22 23999999987652
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC-ChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPD-MAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
.......|+.||.+.+.+++.++.++ ||++++|+||.|.++..... ..............+ ..
T Consensus 170 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p------------~~ 236 (277)
T 4fc7_A 170 -GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASP------------LQ 236 (277)
T ss_dssp -TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTST------------TS
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCC------------CC
Confidence 22456789999999999999999874 89999999999998721000 000122222333222 22
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
-+.+++|+|++++.++........|+++++.+|..++
T Consensus 237 r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG~~~~ 273 (277)
T 4fc7_A 237 RLGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWLT 273 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHH
T ss_pred CCcCHHHHHHHHHHHcCCccCCcCCCEEEECCCcccC
Confidence 3678999999999999876557889999999876544
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=215.22 Aligned_cols=225 Identities=12% Similarity=0.130 Sum_probs=156.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEe-CCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLD-NFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+|+||||+|+||++++++|+++|++|++++ |+.+..+...+.. .....++.++.+|++|.++++++++.+
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEF---KAAGINVVVAKGDVKNPEDVENMVKTAMD 79 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHH---HHTTCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHH---HhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999994 4332111111111 112457899999999999999988864
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEcccc-ccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSS-VYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~-v~g~~~~~~~~e~ 232 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+ .+. ++||++||.. .++
T Consensus 80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~---------- 148 (247)
T 2hq1_A 80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKS-GKIINITSIAGIIG---------- 148 (247)
T ss_dssp HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTC-EEEEEECC----------------
T ss_pred hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcChhhccC----------
Confidence 68999999998643 124456778999999998888887753 443 4999999974 443
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
.++...|+.||.+.+.+++.++.++ |+++++++||.+.++.... ....+...+..+.+ ..
T Consensus 149 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~------------~~ 211 (247)
T 2hq1_A 149 ---NAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV--LPDKVKEMYLNNIP------------LK 211 (247)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--SCHHHHHHHHTTST------------TS
T ss_pred ---CCCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh--cchHHHHHHHhhCC------------CC
Confidence 1345789999999999999998874 8999999999998762111 00122222222221 23
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+++++|+|++++.++..+.....|++|+++++.
T Consensus 212 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 212 RFGTPEEVANVVGFLASDDSNYITGQVINIDGGL 245 (247)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CCCCHHHHHHHHHHHcCcccccccCcEEEeCCCc
Confidence 4789999999999998765444678999998764
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=212.81 Aligned_cols=225 Identities=13% Similarity=0.104 Sum_probs=166.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+|+||.+++++|+++|++|++++|+.+ +...... .....++.++.+|++|.++++++++.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l---~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 76 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEI---ARHGVKAVHHPADLSDVAQIEALFALAERE 76 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHH---HTTSCCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHH---HhcCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999654 1111111 112356889999999999999998854
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ...++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------------ 143 (255)
T 2q2v_A 77 FGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNW-GRIINIASVHGLV------------ 143 (255)
T ss_dssp HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTS------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEcCchhcc------------
Confidence 679999999976432 123455678999999877776665 45553 4999999988753
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChH---HHH---H----HHHHcCCCeEEEec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAY---FSF---T----RNILQGKPITVYRG 301 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~---~~~---~----~~~~~~~~~~~~~~ 301 (421)
..++...|+.||.+.+.+++.++.+. |+++++|+||.+++|.... .. ... . ..+..
T Consensus 144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~--------- 212 (255)
T 2q2v_A 144 GSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQK--QIDDRAANGGDPLQAQHDLLA--------- 212 (255)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHH--HHHHHHHHTCCHHHHHHHHHT---------
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhh--hcccccccccchHHHHHHHHh---------
Confidence 12345789999999999999999874 8999999999999873210 00 000 0 11101
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.......+++++|+|++++.++........|+.|++.++.
T Consensus 213 --~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 252 (255)
T 2q2v_A 213 --EKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGW 252 (255)
T ss_dssp --TTCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred --ccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCCc
Confidence 1112335899999999999998765445678999998874
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=218.28 Aligned_cols=222 Identities=20% Similarity=0.113 Sum_probs=167.7
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.++++|+||||||+||||++++++|+++|++|++++|+.+.... ...+.+|++|.+++.++++.+
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~--------------~~~~~~Dv~~~~~~~~~~~~~ 88 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA--------------DLHLPGDLREAAYADGLPGAV 88 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCC--------------SEECCCCTTSHHHHHHHHHHH
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHh--------------hhccCcCCCCHHHHHHHHHHH
Confidence 344789999999999999999999999999999999996543321 234578999999998888764
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 89 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~--------- 158 (266)
T 3uxy_A 89 AAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGG-GAIVNVASCWGLR--------- 158 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCSBTTB---------
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECCHHhCC---------
Confidence 789999999986532 234456678999999999999988 44443 4999999987652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC-----CChHHHHHHHHHcCCCeEEEecCC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRP-----DMAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
+.++...|+.||.+.+.+++.++.++ ||++++|+||.|.+|.... ..........+....
T Consensus 159 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~--------- 226 (266)
T 3uxy_A 159 ---PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTV--------- 226 (266)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTS---------
T ss_pred ---CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcC---------
Confidence 22456789999999999999999875 8999999999999862110 000111112222222
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
....+.+++|+|++++.++........|+++++.+|..+
T Consensus 227 ---p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 265 (266)
T 3uxy_A 227 ---PLGRIAEPEDIADVVLFLASDAARYLCGSLVEVNGGKAV 265 (266)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred ---CCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCEeC
Confidence 233578899999999999987655678999999988654
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=215.00 Aligned_cols=234 Identities=10% Similarity=0.020 Sum_probs=174.6
Q ss_pred hhcccCCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHH
Q 043169 82 SAQIHRSGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAK 159 (421)
Q Consensus 82 ~~~~~~~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~ 159 (421)
...+..+++|+||||||+ ++||.+++++|+++|++|++++|+. .++..+.... ...++.++.+|++|.+++++
T Consensus 18 ~~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~---~~~~~~~~~~Dl~~~~~v~~ 92 (280)
T 3nrc_A 18 GSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCA---EFNPAAVLPCDVISDQEIKD 92 (280)
T ss_dssp ----CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHG---GGCCSEEEECCTTCHHHHHH
T ss_pred CCcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHH---hcCCceEEEeecCCHHHHHH
Confidence 344556889999999999 5599999999999999999999965 2122222211 22468999999999999999
Q ss_pred Hhhcc-----CCcEEEEcccccCch---------hhccCCchhhhhhHHHHHHHHHHHHhcC--CCCeEEEEccccccCC
Q 043169 160 LFDAV-----AFTHVMHLAAQAGVR---------YAMQNPHSYVHSNIAGLVTLLEACKSAN--PQPSIVWASSSSVYGL 223 (421)
Q Consensus 160 ~~~~~-----~~d~vi~~Ag~~~~~---------~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~riV~~SS~~v~g~ 223 (421)
+++.+ ++|+||||||+.... ...++++..+++|+.++.++++++.... ..++||++||...+.
T Consensus 93 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~- 171 (280)
T 3nrc_A 93 LFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK- 171 (280)
T ss_dssp HHHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS-
T ss_pred HHHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc-
Confidence 98875 789999999986531 2344556789999999999999886431 134999999987653
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEe
Q 043169 224 NENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300 (421)
Q Consensus 224 ~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (421)
+.++...|+.||.+.+.+++.++.+ .|+++++|+||.|.++..........+........+
T Consensus 172 -----------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p----- 235 (280)
T 3nrc_A 172 -----------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSP----- 235 (280)
T ss_dssp -----------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHST-----
T ss_pred -----------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCC-----
Confidence 2245678999999999999999887 589999999999998754332222333333333222
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
...+..++|+|++++.++........|+++++.+|..
T Consensus 236 -------~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG~~ 272 (280)
T 3nrc_A 236 -------LKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYH 272 (280)
T ss_dssp -------TCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTTGG
T ss_pred -------CCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCCcc
Confidence 1236778999999999998765567899999988764
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=218.91 Aligned_cols=242 Identities=14% Similarity=0.141 Sum_probs=172.8
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC--------ChhHHHHHH-HhhcCCceEEEEcccCCHH
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY--------DPSLKKARK-ALLNNHGVFVIEGDINDAK 155 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~ 155 (421)
+.++++|+||||||+||||.++++.|+++|++|++++|+.+.. .+....... ......++.++.+|++|.+
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLA 120 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 4457899999999999999999999999999999998863221 111111111 1123467899999999999
Q ss_pred HHHHHhhcc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccC
Q 043169 156 LLAKLFDAV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYG 222 (421)
Q Consensus 156 ~~~~~~~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g 222 (421)
+++++++.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++.+ .+..++||++||...+.
T Consensus 121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~ 200 (317)
T 3oec_A 121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR 200 (317)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence 999998865 789999999986532 23445667899999999999988743 33234899999987652
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCC--Ce-
Q 043169 223 LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGK--PI- 296 (421)
Q Consensus 223 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~--~~- 296 (421)
..+....|+.||.+.+.+++.++.++ ||++++|+||.|.++..... .+...+.... +.
T Consensus 201 ------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~----~~~~~~~~~~~~~~~ 264 (317)
T 3oec_A 201 ------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNE----KLLKMFLPHLENPTR 264 (317)
T ss_dssp ------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCH----HHHHHHCTTCSSCCH
T ss_pred ------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccch----hhhhhhhhhccccch
Confidence 22456789999999999999999884 89999999999998632110 0111110000 00
Q ss_pred ----EEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 297 ----TVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 297 ----~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..+. ........+++++|+|++++.++........|+++++.+|..
T Consensus 265 ~~~~~~~~--~~~~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 265 EDAAELFS--QLTLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGGQL 314 (317)
T ss_dssp HHHHHHHT--TTCSSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred hHHHHHHh--hhccCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcchh
Confidence 0000 001111468899999999999997765567899999988754
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-27 Score=225.46 Aligned_cols=233 Identities=12% Similarity=0.079 Sum_probs=172.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHH-HHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKAR-KALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++|++|||||+||||.+++++|+++|++|++++|+.+. ....... .......++.++.+|++|.++++++++.+
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEE--EDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGH--HHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcch--hHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999885321 1111111 11123467899999999999999888764
Q ss_pred ----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+... .++||++||...+.
T Consensus 124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~------------ 191 (294)
T 3r3s_A 124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ------------ 191 (294)
T ss_dssp HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS------------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc------------
Confidence 78999999998542 123445678999999999999999976542 23999999998764
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+......|+.||.+.+.+++.++.++ ||++++|+||.|+++..............+ ........+
T Consensus 192 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~------------~~~~p~~r~ 259 (294)
T 3r3s_A 192 PSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQF------------GQQTPMKRA 259 (294)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGGSTTT------------TTTSTTSSC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHHHHHH------------HhcCCCCCC
Confidence 22456789999999999999999885 899999999999986310000000000000 111223447
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
..++|+|++++.++........|+++++.+|..+
T Consensus 260 ~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 260 GQPAELAPVYVYLASQESSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred cCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 7899999999999987656678999999987654
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=222.93 Aligned_cols=227 Identities=16% Similarity=0.090 Sum_probs=167.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||+++++.|+++|++|++++|+.+..+....... ....++.++.+|++|.++++++++.+
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR---EAGVEADGRTCDVRSVPEIEALVAAVVE 95 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999996432211111111 11356889999999999999888764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc------CCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA------NPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~------~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||..... ...++++..+++|+.|+.++++++.+. +. ++||++||...+.
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~-g~iv~isS~~~~~--------- 165 (277)
T 2rhc_B 96 RYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT-GRIVNIASTGGKQ--------- 165 (277)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTE-EEEEEECCGGGTS---------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCC-eEEEEECcccccc---------
Confidence 689999999986432 223345678999999999999987654 32 4999999987642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChH-----------HHHHHHHHcCCCeE
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAY-----------FSFTRNILQGKPIT 297 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~-----------~~~~~~~~~~~~~~ 297 (421)
...+...|+.||.+.+.+++.++.+. ||++++|+||.++++.... .. ......+...
T Consensus 166 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---- 236 (277)
T 2rhc_B 166 ---GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAAS--VREHYSDIWEVSTEEAFDRITAR---- 236 (277)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHH--HHHHHHHHHTCCHHHHHHHHHHH----
T ss_pred ---CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhh--hhhhcccccccchHHHHHHHHhc----
Confidence 12356789999999999999998874 7999999999999862110 00 0011111111
Q ss_pred EEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 298 VYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 298 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.....+++++|+|++++.++..+.....|+++++.+|.
T Consensus 237 --------~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 237 --------VPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL 274 (277)
T ss_dssp --------STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred --------CCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCc
Confidence 11234889999999999999876556778999998764
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=217.37 Aligned_cols=233 Identities=15% Similarity=0.089 Sum_probs=172.1
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
+.++++|++|||||+|+||++++++|+++|++|++++++.... .+..... .....++.++.+|++|.++++++++.
T Consensus 13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 89 (270)
T 3is3_A 13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKD---AEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQ 89 (270)
T ss_dssp TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 3457899999999999999999999999999999988754211 1111111 11246789999999999999999887
Q ss_pred c-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCC
Q 043169 164 V-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 164 ~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
+ ++|+||||||+.... .+.++++..+++|+.|+.++++++.+... .++||++||.....
T Consensus 90 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 158 (270)
T 3is3_A 90 AVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD----------- 158 (270)
T ss_dssp HHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT-----------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc-----------
Confidence 5 789999999986432 23455678899999999999999876532 24999999976311
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC----------CChHHHHHHHHHcCCCeEEEe
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP----------DMAYFSFTRNILQGKPITVYR 300 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 300 (421)
...++...|+.||.+.+.+++.++.+ +||++++|+||.|.++.... ..........+....+
T Consensus 159 ~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 233 (270)
T 3is3_A 159 FSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASP----- 233 (270)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHST-----
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCC-----
Confidence 12245678999999999999999988 48999999999999873210 0011112222222111
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+.+++|+|++++.++........|+++++.+|.
T Consensus 234 -------~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 234 -------LHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGA 269 (270)
T ss_dssp -------TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred -------CCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCCCC
Confidence 223678999999999999876556789999998764
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=217.59 Aligned_cols=239 Identities=10% Similarity=0.079 Sum_probs=173.4
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|++|||||+|+||.+++++|+++|++|++++|+.+..+...++... ......+.++.+|++|.++++++++..
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~g 84 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRA-QYPDAILQPVVADLGTEQGCQDVIEKYP 84 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH-HCTTCEEEEEECCTTSHHHHHHHHHHCC
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-hCCCceEEEEecCCCCHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999965433222222211 112356889999999999999999876
Q ss_pred CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+. +.
T Consensus 85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------------~~ 151 (267)
T 3t4x_A 85 KVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKE-GRVIFIASEAAIM------------PS 151 (267)
T ss_dssp CCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTE-EEEEEECCGGGTS------------CC
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CEEEEEcchhhcc------------CC
Confidence 789999999986542 1234456779999999888877663 3442 4999999988752 23
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC---------CCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGR---------PDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
++...|+.||.+.+.+++.++.++ ||++++|+||.+.++... ................. .
T Consensus 152 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 223 (267)
T 3t4x_A 152 QEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENR--------P 223 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHC--------T
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccC--------C
Confidence 456889999999999999999874 799999999999876110 00001111111111000 0
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
......+.+++|+|++++.++........|+++++.+|...+
T Consensus 224 ~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 224 TSIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGGLVRS 265 (267)
T ss_dssp TCSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTCSCS
T ss_pred cccccCccCHHHHHHHHHHHcCccccCccCCeEEECCCcccc
Confidence 011345888999999999999876567889999999886554
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=216.22 Aligned_cols=224 Identities=16% Similarity=0.151 Sum_probs=168.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||.++++.|+++|++|++++|+.+.. ...... ...++.++.+|++|.++++++++.+
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~----~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGA----KAAAAS--IGKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHH----HHHHHH--HCTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHH--hCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999854321 111111 1467899999999999999998865
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+..++||++||...+.
T Consensus 77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 145 (247)
T 3rwb_A 77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA----------- 145 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH-----------
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc-----------
Confidence 789999999986432 234456678999999999998884 4444334999999987652
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC--CChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP--DMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
..+....|+.||.+.+.+++.++.+ +||++++|+||.|.++.... ......+.... . ..
T Consensus 146 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---~------------~~ 209 (247)
T 3rwb_A 146 -GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML---Q------------AM 209 (247)
T ss_dssp -TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH---S------------SS
T ss_pred -CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc---c------------cc
Confidence 2245678999999999999999988 58999999999998762111 00001111110 1 11
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..+..++|+|++++.++........|+++++.+|.
T Consensus 210 ~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 210 KGKGQPEHIADVVSFLASDDARWITGQTLNVDAGM 244 (247)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 23567899999999999876566789999998764
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=218.05 Aligned_cols=231 Identities=16% Similarity=0.127 Sum_probs=167.9
Q ss_pred cccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 84 QIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 84 ~~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
+..++++|++|||||+|+||+++++.|+++|++|++++|+.+..+........ ....++.++.+|++|.++++++++.
T Consensus 15 ~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~v~~~~~~ 92 (267)
T 1vl8_A 15 EVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE--KYGVETMAFRCDVSNYEEVKKLLEA 92 (267)
T ss_dssp --CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 33457899999999999999999999999999999999964322111111101 1235688999999999999998876
Q ss_pred c-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEcccc-ccCCCCCCCC
Q 043169 164 V-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSS-VYGLNENVPF 229 (421)
Q Consensus 164 ~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~-v~g~~~~~~~ 229 (421)
+ ++|+||||||..... ...++++..+++|+.|+.++++++. +.+. ++||++||.. .+.
T Consensus 93 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~------- 164 (267)
T 1vl8_A 93 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDN-PSIINIGSLTVEEV------- 164 (267)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSS-CEEEEECCGGGTCC-------
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEECCcchhcc-------
Confidence 4 689999999986432 1233456789999999999988874 3343 4999999987 321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChH--HHHHHHHHcCCCeEEEecCCC
Q 043169 230 SEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAY--FSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 230 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 304 (421)
+.++...|+.||.+.+.+++.++.+ +||++++|+||.+.++.... .. ......+....+
T Consensus 165 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~p--------- 228 (267)
T 1vl8_A 165 -----TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEA--VFSDPEKLDYMLKRIP--------- 228 (267)
T ss_dssp -----CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHH--HHTCHHHHHHHHHTCT---------
T ss_pred -----CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccc--cccChHHHHHHHhhCC---------
Confidence 1234678999999999999999887 48999999999998873210 00 112222222211
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+.+++|+|++++.++........|+.+.+.+|.
T Consensus 229 ---~~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 264 (267)
T 1vl8_A 229 ---LGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW 264 (267)
T ss_dssp ---TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ---CCCCcCHHHHHHHHHHHcCccccCCcCCeEEECCCC
Confidence 123678999999999999765456778999998764
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=216.28 Aligned_cols=227 Identities=15% Similarity=0.100 Sum_probs=167.6
Q ss_pred cccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 84 QIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 84 ~~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
.+.++++|+||||||+|+||+++++.|+++|++|++++|+.+. .+.... ....++.++.+|++|.++++++++.
T Consensus 21 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~ 94 (266)
T 3grp_A 21 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDK----LKEIAA--DLGKDVFVFSANLSDRKSIKQLAEV 94 (266)
T ss_dssp CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH--HHCSSEEEEECCTTSHHHHHHHHHH
T ss_pred chhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH--HhCCceEEEEeecCCHHHHHHHHHH
Confidence 3455889999999999999999999999999999999985421 111111 1245789999999999999998876
Q ss_pred c-----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCC
Q 043169 164 V-----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 164 ~-----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
+ ++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 95 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~Iv~isS~~~~~-------- 165 (266)
T 3grp_A 95 AEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRY-GRIINITSIVGVV-------- 165 (266)
T ss_dssp HHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCC------------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEECCHHHcC--------
Confidence 4 68999999998643 2234566788999999977777765 33443 4999999977642
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
...+...|+.||.+.+.+++.++.+ +||++++|+||.|.++..... .......+....+
T Consensus 166 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p------------ 227 (266)
T 3grp_A 166 ----GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL--NEKQKEAIMAMIP------------ 227 (266)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC--CHHHHHHHHTTCT------------
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc--CHHHHHHHHhcCC------------
Confidence 1234578999999999999999887 489999999999988632111 1122333333332
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+.+++|+|++++.++........|+++++.+|.
T Consensus 228 ~~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 228 MKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGM 263 (266)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CCCCcCHHHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 234678999999999999876556789999998764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-27 Score=215.82 Aligned_cols=233 Identities=14% Similarity=0.076 Sum_probs=166.9
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.++++|++|||||+||||.+++++|+++|++|++++++... ........ .....++.++.+|++|.++++++++.+
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAE---GAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAA 80 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCH---HHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 34789999999999999999999999999999999654321 11111111 122457899999999999999998865
Q ss_pred -----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEcccccc-CCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVY-GLNENVPFSEA 232 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~-g~~~~~~~~e~ 232 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+... .++||++||...+ .
T Consensus 81 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 150 (259)
T 3edm_A 81 ADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG---------- 150 (259)
T ss_dssp HHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC----------
T ss_pred HHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC----------
Confidence 68999999997522 123344567899999999999999976532 2389999998765 2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIYG--LSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..++...|+.||.+.+.+++.++.+++ |++++|+||.|.++...... .......+. .......
T Consensus 151 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~-~~~~~~~~~------------~~~p~~r 215 (259)
T 3edm_A 151 --GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFT-KPEVRERVA------------GATSLKR 215 (259)
T ss_dssp --CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC-----------------------------------C
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCccccccc-ChHHHHHHH------------hcCCCCC
Confidence 124567899999999999999998854 99999999999887332100 001111111 1122345
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
+.+++|+|++++.++........|++|++.++...+
T Consensus 216 ~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~~ 251 (259)
T 3edm_A 216 EGSSEDVAGLVAFLASDDAAYVTGACYDINGGVLFS 251 (259)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSBC
T ss_pred CcCHHHHHHHHHHHcCccccCccCCEEEECCCcCCC
Confidence 778999999999999876556789999998876443
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=218.09 Aligned_cols=233 Identities=16% Similarity=0.088 Sum_probs=161.4
Q ss_pred cccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhh
Q 043169 84 QIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 84 ~~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
++..+++|++|||||+||||+++++.|+++|++|++++|+.. +........ .....++.++++|++|.++++++++
T Consensus 23 mm~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 99 (280)
T 4da9_A 23 MMTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDA---EGVAPVIAELSGLGARVIFLRADLADLSSHQATVD 99 (280)
T ss_dssp CCSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCH---HHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHH
T ss_pred hhhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 344578999999999999999999999999999999996432 111111111 1224679999999999999998888
Q ss_pred cc-----CCcEEEEcccccCc------hhhccCCchhhhhhHHHHHHHHHHHHhc----C--CCCeEEEEccccccCCCC
Q 043169 163 AV-----AFTHVMHLAAQAGV------RYAMQNPHSYVHSNIAGLVTLLEACKSA----N--PQPSIVWASSSSVYGLNE 225 (421)
Q Consensus 163 ~~-----~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~l~~~~~~~----~--~~~riV~~SS~~v~g~~~ 225 (421)
.+ ++|+||||||+... ..+.++++..+++|+.|+.++++++.+. + ..++||++||...+.
T Consensus 100 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--- 176 (280)
T 4da9_A 100 AVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM--- 176 (280)
T ss_dssp HHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------
T ss_pred HHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc---
Confidence 65 78999999998421 1234556788999999999888887432 2 124899999987652
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecC
Q 043169 226 NVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGK 302 (421)
Q Consensus 226 ~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
..++...|+.||.+.+.+++.++.+ +||++++|+||.|.++..... .......+..
T Consensus 177 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~---------- 235 (280)
T 4da9_A 177 ---------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAV--SGKYDGLIES---------- 235 (280)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------
T ss_pred ---------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhc--chhHHHHHhh----------
Confidence 2245678999999999999999988 589999999999998743210 0011110111
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.......+.+++|+|++++.++........|+++++.+|..
T Consensus 236 -~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (280)
T 4da9_A 236 -GLVPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGGLS 276 (280)
T ss_dssp -------CCBCHHHHHHHHHHHHTSTTGGGTTCEEEESTTCC
T ss_pred -cCCCcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 01123347889999999999998765567899999988754
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-27 Score=220.69 Aligned_cols=235 Identities=18% Similarity=0.266 Sum_probs=172.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC-CCCCh-hHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN-NYYDP-SLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+|+|+||||+|+||++++++|+++|++|++++|+. ....+ .... ........+++++.+|++|.+++.++++++ |
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~--d 78 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEE-LIDNYQSLGVILLEGDINDHETLVKAIKQV--D 78 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHH-HHHHHHHTTCEEEECCTTCHHHHHHHHTTC--S
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHH-HHHHHHhCCCEEEEeCCCCHHHHHHHHhCC--C
Confidence 57899999999999999999999999999999976 22221 1111 111122357999999999999999999976 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCCC-CChHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQP-ASLYAAT 245 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~-~~~Y~~s 245 (421)
+|||+||... +.++.+++++|++.+ ++ |||+ | +||... ++.... .| ...| .+
T Consensus 79 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~s 132 (307)
T 2gas_A 79 IVICAAGRLL---------------IEDQVKIIKAIKEAGNVK-KFFP-S---EFGLDV----DRHDAV-EPVRQVF-EE 132 (307)
T ss_dssp EEEECSSSSC---------------GGGHHHHHHHHHHHCCCS-EEEC-S---CCSSCT----TSCCCC-TTHHHHH-HH
T ss_pred EEEECCcccc---------------cccHHHHHHHHHhcCCce-EEee-c---ccccCc----ccccCC-CcchhHH-HH
Confidence 9999998642 345789999999988 65 8883 3 344221 121222 22 3578 99
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHH---HHHcCCCeEEEecCCCCcceeecccHHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTR---NILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL 322 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 322 (421)
|..+|.++++ .|++++++|||.++++... .+.. ....++.+.++ ++++..++++|++|+|++++
T Consensus 133 K~~~e~~~~~----~~i~~~~lrp~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~ 199 (307)
T 2gas_A 133 KASIRRVIEA----EGVPYTYLCCHAFTGYFLR------NLAQLDATDPPRDKVVIL---GDGNVKGAYVTEADVGTFTI 199 (307)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEETTTTGG------GTTCTTCSSCCSSEEEEE---TTSCSEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEcceeeccccc------cccccccccCCCCeEEEe---cCCCcceEEeeHHHHHHHHH
Confidence 9999988764 5899999999999885321 1110 01133344444 56788999999999999999
Q ss_pred HhhhcCCCCCCceEEEecCC-CccCHHHHHHHHHHHhCCccccceec
Q 043169 323 GSLDTSAGPAPYRIFNLGNT-SPVTVPKLVNILERHLKVKAKKNVIE 368 (421)
Q Consensus 323 ~~l~~~~~~~~~~~~~i~~~-~~~t~~el~~~l~~~~g~~~~~~~~~ 368 (421)
.++..+ ...+++|++.++ +.+|+.|+++.+.+.+|.+.+....+
T Consensus 200 ~~l~~~--~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (307)
T 2gas_A 200 RAANDP--NTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS 244 (307)
T ss_dssp HHHTCG--GGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEEC
T ss_pred HHHcCc--cccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecC
Confidence 999876 234678888764 67999999999999999876654443
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=215.21 Aligned_cols=236 Identities=12% Similarity=0.044 Sum_probs=164.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC-CChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY-YDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+||||||+||||+++++.|+++|++|++++|+.+. .+........ ....++.++.+|++|.++++++++.+
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 79 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAA--QHGVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHH--HHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHh--ccCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996532 1111111111 01357889999999999999988764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 80 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~----------- 147 (260)
T 1x1t_A 80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGF-GRIINIASAHGLV----------- 147 (260)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS-----------
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEECcHHhCc-----------
Confidence 689999999976431 2334566789999999999888874 3343 4999999987753
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHH--HcCCCeEEE-ecCCCCcc
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNI--LQGKPITVY-RGKNHVDL 307 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~ 307 (421)
..++...|+.||.+.+.+++.++.++ |+++++|+||.|.+|..... ........ ...+....+ . ....
T Consensus 148 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~p 221 (260)
T 1x1t_A 148 -ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQ--ISALAEKNGVDQETAARELLS---EKQP 221 (260)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC--------------------------CHH---HHCT
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHh--hhhhccccCCchHHHHHHHhh---ccCC
Confidence 12456789999999999999998874 89999999999998743211 00000000 000000000 0 0011
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+.+++|+|++++.++........|+++++.++.
T Consensus 222 ~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 222 SLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGW 257 (260)
T ss_dssp TCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCCc
Confidence 235789999999999999765455779999998764
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=217.93 Aligned_cols=237 Identities=14% Similarity=0.092 Sum_probs=172.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++.+
T Consensus 11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 88 (265)
T 1h5q_A 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGK--EFGVKTKAYQCDVSNTDIVTKTIQQIDA 88 (265)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHH--HHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHH--hcCCeeEEEEeeCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999976543322222211 12457899999999999999988764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++++..+++|+.|+.++++++.+. +..++||++||...+...... .
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-----~ 163 (265)
T 1h5q_A 89 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS-----L 163 (265)
T ss_dssp HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE-----T
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc-----c
Confidence 589999999986432 123445678999999999999987543 322499999998765321100 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
....+...|+.||.+.+.+++.++.+. |+++++|+||.|+++..... ...+...+....+ ...
T Consensus 164 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~~~ 229 (265)
T 1h5q_A 164 NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM--DKKIRDHQASNIP------------LNR 229 (265)
T ss_dssp TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS--CHHHHHHHHHTCT------------TSS
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc--chhHHHHHHhcCc------------ccC
Confidence 111346789999999999999998774 89999999999998743321 1122222222221 123
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+++++|+|++++.++........|+.|++.+|..
T Consensus 230 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 230 FAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQL 263 (265)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred CCCHHHHHHHHHhhccCchhcCcCcEEEecCCEe
Confidence 7889999999999997754456789999988753
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=216.08 Aligned_cols=227 Identities=15% Similarity=0.105 Sum_probs=170.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++++.|+++|++|++.+|+.+..++ ...+ ...++.++++|++|+++++++++.+
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~----~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDA----AIAE--IGGGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHHH--HCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH----HHHH--cCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999996542222 1111 2457889999999999999988775
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|++|||||.... +.+.++++..+++|+.|+.++.+++.+.-. .++||++||...+. ..
T Consensus 100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~------------~~ 167 (273)
T 4fgs_A 100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST------------GT 167 (273)
T ss_dssp HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS------------CC
T ss_pred HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc------------CC
Confidence 79999999998543 234556778999999999999998854321 13899999987542 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC---C--hHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPD---M--AYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+....|+.||.+...+++.++.++ ||+|++|.||.|..|..... . ....+...+.+.-|+.
T Consensus 168 ~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~Plg----------- 236 (273)
T 4fgs_A 168 PAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMG----------- 236 (273)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTS-----------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCC-----------
Confidence 345789999999999999999884 79999999999988742211 1 1122333333333321
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
-+..++|+|.+++.++....+...|+++.|.+|.
T Consensus 237 -R~g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 237 -RVGRAEEVAAAALFLASDDSSFVTGAELFVDGGS 270 (273)
T ss_dssp -SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -CCcCHHHHHHHHHHHhCchhcCccCCeEeECcCh
Confidence 1456899999999999877677889999998764
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=217.51 Aligned_cols=230 Identities=12% Similarity=0.047 Sum_probs=169.3
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.+++++|+||||||+|+||++++++|+++|++|++++|+............ .....++.++.+|++|.+++.++++.+
T Consensus 24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~v~~~~~~~ 101 (271)
T 4iin_A 24 AMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNEL--EEKGYKAAVIKFDAASESDFIEAIQTI 101 (271)
T ss_dssp CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH--HHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH--HhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 345789999999999999999999999999999999995432111111111 122457899999999999999998865
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 102 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~--------- 171 (271)
T 4iin_A 102 VQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRF-GSVVNVASIIGER--------- 171 (271)
T ss_dssp HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHH---------
T ss_pred HHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCC-CEEEEEechhhcC---------
Confidence 789999999986542 2334566889999999988888774 3343 4999999977642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+..+...|+.||.+.+.+++.++.+ .|+++++|+||.|.++.... +.... ...+ ......
T Consensus 172 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~------~~~~~-----~~~~---~~~~~~ 234 (271)
T 4iin_A 172 ---GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNAN------LKDEL-----KADY---VKNIPL 234 (271)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-----------------------C---GGGCTT
T ss_pred ---CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhh------hcHHH-----HHHH---HhcCCc
Confidence 2245688999999999999999887 58999999999998873221 00000 0000 011223
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..+.+++|+|++++.++........|+++++.+|-
T Consensus 235 ~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 235 NRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGL 269 (271)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCCCe
Confidence 45789999999999999876556789999998764
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=219.62 Aligned_cols=228 Identities=18% Similarity=0.129 Sum_probs=161.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.++|+||||||+||||++++++|+++|++|++++++.. +..+..... .....++.++.+|++|.++++++++.+
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANR---EAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDR 100 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCh---hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999988744321 111111111 122467899999999999999998876
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhc------CCCCeEEEEccccccCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSA------NPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~------~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+. +..++||++||...+..
T Consensus 101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------- 173 (272)
T 4e3z_A 101 QFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILG------- 173 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHC-------
T ss_pred hCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccC-------
Confidence 78999999998643 1134456688999999999999887543 12348999999776421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
.......|+.||.+.+.+++.++.++ |+++++|+||.|.++..... ........+.. ...
T Consensus 174 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~------------~~~ 236 (272)
T 4e3z_A 174 ----SATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASG-GLPDRAREMAP------------SVP 236 (272)
T ss_dssp ----CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------------------------CCT
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCccccc-CChHHHHHHhh------------cCC
Confidence 11234679999999999999999875 89999999999998743221 11111111111 112
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
...+.+++|+|++++.++........|++|++.+|
T Consensus 237 ~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 237 MQRAGMPEEVADAILYLLSPSASYVTGSILNVSGG 271 (272)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCCCcCHHHHHHHHHHHhCCccccccCCEEeecCC
Confidence 23467899999999999987655678999999876
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=212.68 Aligned_cols=232 Identities=10% Similarity=0.058 Sum_probs=174.3
Q ss_pred CCCCCEEEEEcCCCh--hHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGF--VGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++|+||||||+|+ ||.+++++|+++|++|++++|+... .+...+.. ......++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERL-EKSVHELA-GTLDRNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHHH-HTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHH-HHHHHHHH-HhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence 478999999999966 9999999999999999999986321 11111111 1122347999999999999999998875
Q ss_pred -----CCcEEEEcccccCc--------hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV--------RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||.... ....+++...+++|+.|+.++++++..... .++||++||...+.
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-------- 153 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL-------- 153 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS--------
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc--------
Confidence 78999999998652 122334567899999999999999876532 23999999987652
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+....|+.||.+.+.+++.++.++ ||++++|+||.|.++..............+....+
T Consensus 154 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~------------ 217 (266)
T 3oig_A 154 ----VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAP------------ 217 (266)
T ss_dssp ----CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHST------------
T ss_pred ----cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcCC------------
Confidence 22456789999999999999999874 89999999999998744332222333333333222
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
...+.+++|+|++++.++........|+++++.+|-.
T Consensus 218 ~~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG~~ 254 (266)
T 3oig_A 218 LRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFH 254 (266)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCCeE
Confidence 1236789999999999998765567899999988754
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=212.07 Aligned_cols=219 Identities=17% Similarity=0.093 Sum_probs=164.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+||||||+||||++++++|+++|++|++++|+.+. ....... . ...+.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEE----GKAMAAE-L-ADAARYVHLDVTQPAQWKAAVDTAVTA 78 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHH-T-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHH-h-hcCceEEEecCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999995421 1111111 1 235889999999999999998854
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------------ 145 (260)
T 1nff_A 79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGR-GSIINISSIEGLA------------ 145 (260)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEeehhhcC------------
Confidence 679999999986432 233456678999999987666655 44453 4999999988763
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
..++...|+.||.+.+.+++.++.+ +|+++++|+||.|+++.... ...... ......+
T Consensus 146 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------------~~~~~~-------~~~~~~~ 206 (260)
T 1nff_A 146 GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW------------VPEDIF-------QTALGRA 206 (260)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT------------SCTTCS-------CCSSSSC
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCcccc------------chhhHH-------hCccCCC
Confidence 1234578999999999999999887 58999999999999974220 000000 0112347
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.+++|+|++++.++........|++|++.++..
T Consensus 207 ~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 207 AEPVEVSNLVVYLASDESSYSTGAEFVVDGGTV 239 (260)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCHHHHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 899999999999987654456789999998754
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=215.25 Aligned_cols=227 Identities=11% Similarity=0.066 Sum_probs=165.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+|+||||+||||++++++|+++|++|++++|+.+..+........ ....++.++.+|++|.++++++++.+
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIAN--KYGVKAHGVEMNLLSEESINKAFEEIYN 81 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH--HHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh--hcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999954321111111110 02357899999999999999998754
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 82 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~----------- 149 (248)
T 2pnf_A 82 LVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRW-GRIVNISSVVGFT----------- 149 (248)
T ss_dssp HSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTC-EEEEEECCHHHHH-----------
T ss_pred hcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEEccHHhcC-----------
Confidence 679999999976431 223445678999999997777765 34453 3999999975432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..++...|+.+|.+.+.+++.++++. |+++++++||.++++..... ...+...+....+ ...
T Consensus 150 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~~~ 214 (248)
T 2pnf_A 150 -GNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVL--SEEIKQKYKEQIP------------LGR 214 (248)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS--CHHHHHHHHHTCT------------TSS
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhc--cHHHHHHHHhcCC------------CCC
Confidence 11345789999999999999998773 89999999999998743211 1122222222211 124
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+++++|+|++++.++........|++|++.++
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 215 FGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 78999999999999876534567899999876
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=214.64 Aligned_cols=225 Identities=16% Similarity=0.109 Sum_probs=167.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEccc--CCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI--NDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~~~~~~~~~ 164 (421)
.+++|+||||||+|+||.++++.|+++|++|++++|+.+..+........ ....++.++.+|+ +|.++++++++.+
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINE--ETGRQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--hcCCCceEEEEecccCCHHHHHHHHHHH
Confidence 47899999999999999999999999999999999965433222222211 1234788999999 9999999888765
Q ss_pred -----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+ .++||++||...+.
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~-------- 157 (252)
T 3f1l_A 87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD-AGSLVFTSSSVGRQ-------- 157 (252)
T ss_dssp HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGTS--------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC-CCEEEEECChhhcc--------
Confidence 78999999998532 1233445678999999999999988 3444 34999999987652
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIYG--LSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
...+...|+.||.+.+.+++.++.+++ |++++|+||.|.++ +........ ..
T Consensus 158 ----~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~----------~~~~~~~~~------------~~ 211 (252)
T 3f1l_A 158 ----GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTA----------MRASAFPTE------------DP 211 (252)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSH----------HHHHHCTTC------------CG
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCc----------hhhhhCCcc------------ch
Confidence 224567899999999999999998864 99999999999875 111111111 11
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHH
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVP 348 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~ 348 (421)
..+.+++|+|.+++.++........|+.+++.+|...++.
T Consensus 212 ~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 212 QKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp GGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC------
T ss_pred hccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCcCCCCC
Confidence 2367889999999999987766788999999988766554
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=218.80 Aligned_cols=236 Identities=12% Similarity=0.076 Sum_probs=171.7
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.++++|++|||||+|+||.+++++|+++|++|++++|+.+..+...+..... ....++.++.+|++|.++++++++.+
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQR-FPGARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-STTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999654322222222111 22345899999999999999988765
Q ss_pred ----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhc---CCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSA---NPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~---~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||+... ..+.++++..+++|+.|+.++++++.+. ...++||++||...+.
T Consensus 83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 151 (265)
T 3lf2_A 83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ----------- 151 (265)
T ss_dssp HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS-----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC-----------
Confidence 78999999998643 2234456678999999999999988432 1134899999987652
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC--------CChHHHHHHHHHcCCCeEEEecC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRP--------DMAYFSFTRNILQGKPITVYRGK 302 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
+.+....|+.||.+.+.+++.++.++ ||++++|+||.|.+|.... ......+...+.....
T Consensus 152 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 223 (265)
T 3lf2_A 152 -PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQ------- 223 (265)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTT-------
T ss_pred -CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccC-------
Confidence 22456789999999999999999874 8999999999998862100 0001111111111100
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.....+..++|+|++++.++........|+++++.+|..
T Consensus 224 ---~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~ 262 (265)
T 3lf2_A 224 ---IPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGLS 262 (265)
T ss_dssp ---CTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSSCC
T ss_pred ---CCcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCCCc
Confidence 112247789999999999998765678899999988753
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=221.00 Aligned_cols=229 Identities=13% Similarity=0.109 Sum_probs=167.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-cCC---ceEEEEcccCCHHHHHHHhh
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL-NNH---GVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~---~v~~~~~Dl~d~~~~~~~~~ 162 (421)
++++|++|||||+|+||++++++|+++|++|++++|+.+..+. ...... ... ++.++.+|++|.++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEE----TRQIILKSGVSEKQVNSVVADVTTEDGQDQIIN 78 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHHHHHcCCCCcceEEEEecCCCHHHHHHHHH
Confidence 3688999999999999999999999999999999995432211 111111 112 68999999999999999887
Q ss_pred cc-----CCcEEEEcccccCch--------hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCC
Q 043169 163 AV-----AFTHVMHLAAQAGVR--------YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNE 225 (421)
Q Consensus 163 ~~-----~~d~vi~~Ag~~~~~--------~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~ 225 (421)
.+ ++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+ ++||++||...+...
T Consensus 79 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~- 155 (280)
T 1xkq_A 79 STLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSSIVAGPQA- 155 (280)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGSSSC-
T ss_pred HHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecCccccCCC-
Confidence 64 689999999976421 12334567899999999999998754 33 499999998775311
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC--Ch-----HHHHHHHHHcCCC
Q 043169 226 NVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD--MA-----YFSFTRNILQGKP 295 (421)
Q Consensus 226 ~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~--~~-----~~~~~~~~~~~~~ 295 (421)
.++...|+.||.+.+.+++.++.+ +||++++|+||.|++|..... .. ...+...+....
T Consensus 156 ----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~- 224 (280)
T 1xkq_A 156 ----------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECI- 224 (280)
T ss_dssp ----------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTC-
T ss_pred ----------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcCC-
Confidence 134578999999999999999876 589999999999998732110 00 001111111111
Q ss_pred eEEEecCCCCcceeecccHHHHHHHHHHhhhcC-CCCCCceEEEecCCCc
Q 043169 296 ITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS-AGPAPYRIFNLGNTSP 344 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~i~~~~~ 344 (421)
....+.+++|+|++++.++... .....|+++++.++..
T Consensus 225 -----------p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 225 -----------PIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTS 263 (280)
T ss_dssp -----------TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred -----------CCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCcc
Confidence 1224789999999999998754 4457799999988754
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=216.19 Aligned_cols=229 Identities=16% Similarity=0.084 Sum_probs=168.9
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC-ChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY-DPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
...++|+||||||+||||++++++|+++|++|+++++..... ....... .....++.++.+|++|.++++++++.+
T Consensus 9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (256)
T 3ezl_A 9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQ---KALGFDFYASEGNVGDWDSTKQAFDKV 85 (256)
T ss_dssp ----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHH---HHTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH---HhcCCeeEEEecCCCCHHHHHHHHHHH
Confidence 346889999999999999999999999999999998543322 2211111 123467899999999999999998865
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 86 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~--------- 155 (256)
T 3ezl_A 86 KAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGW-GRIINISSVNGQK--------- 155 (256)
T ss_dssp HHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCCCGGG---------
T ss_pred HHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcchhhcc---------
Confidence 789999999986432 233456678999999988887776 44443 4999999987652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+..+...|+.||.+.+.+++.++.+ .|+++++++||.|.++..... .......+....+ .
T Consensus 156 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~------------~ 218 (256)
T 3ezl_A 156 ---GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAI--RPDVLEKIVATIP------------V 218 (256)
T ss_dssp ---SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS--CHHHHHHHHHHST------------T
T ss_pred ---CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCcccccc--CHHHHHHHHhcCC------------C
Confidence 2245688999999999999999887 489999999999988632111 1223333333222 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..+.+++|+|++++.++........|+++++.+|..
T Consensus 219 ~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~~ 254 (256)
T 3ezl_A 219 RRLGSPDEIGSIVAWLASEESGFSTGADFSLNGGLH 254 (256)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred CCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCEe
Confidence 236789999999999997665567899999988754
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=211.76 Aligned_cols=228 Identities=11% Similarity=0.025 Sum_probs=170.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++|++|||||+||||++++++|+++|++|++++++... ..+..... .....++.++.+|++|.++++++++.+
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 104 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAE---RAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETV 104 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999775421 11111111 112467899999999999999988865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++.+.- ..++||++||..... .+
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~-----------~~ 173 (271)
T 3v2g_A 105 EALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL-----------VP 173 (271)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC-----------CC
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc-----------CC
Confidence 789999999986432 2344567889999999999999987652 134999999965421 11
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.++...|+.||.+.+.+++.++.++ ||++++|+||.|.++....... .........+ ...+.
T Consensus 174 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~---~~~~~~~~~~------------~~r~~ 238 (271)
T 3v2g_A 174 WPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGD---HAEAQRERIA------------TGSYG 238 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCS---SHHHHHHTCT------------TSSCB
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccch---hHHHHHhcCC------------CCCCC
Confidence 2456789999999999999999874 8999999999999885432111 1111222221 12367
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.++|+|++++.++........|+++++.+|.
T Consensus 239 ~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 239 EPQDIAGLVAWLAGPQGKFVTGASLTIDGGA 269 (271)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhCcccCCccCCEEEeCcCc
Confidence 8999999999999766557789999998764
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=214.48 Aligned_cols=225 Identities=12% Similarity=0.101 Sum_probs=167.1
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|+|+||||+|+||++++++|+++|++|++++|+.+..+... .. . ..++.++.+|++|.++++++++.+
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~----~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA----KK-L-GNNCVFAPADVTSEKDVQTALALAK 81 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH----HH-H-CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHH----HH-h-CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999765332221 11 1 357899999999999999998854
Q ss_pred ----CCcEEEEcccccCch----------hhccCCchhhhhhHHHHHHHHHHHHhc----------CCCCeEEEEccccc
Q 043169 165 ----AFTHVMHLAAQAGVR----------YAMQNPHSYVHSNIAGLVTLLEACKSA----------NPQPSIVWASSSSV 220 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----------~~~~~~~~~~~~N~~g~~~l~~~~~~~----------~~~~riV~~SS~~v 220 (421)
++|+||||||..... ...++++..+++|+.++.++++++.+. + .++||++||...
T Consensus 82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~ 160 (265)
T 2o23_A 82 GKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQ-RGVIINTASVAA 160 (265)
T ss_dssp HHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSC-CEEEEEECCTHH
T ss_pred HHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCC-CcEEEEeCChhh
Confidence 689999999986432 223345678999999999999988654 3 348999999877
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeE
Q 043169 221 YGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT 297 (421)
Q Consensus 221 ~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
+. +.++...|+.||.+.+.+++.++.+ .|+++++|+||.+.++..... .......+....+.
T Consensus 161 ~~------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~- 225 (265)
T 2o23_A 161 FE------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSL--PEKVCNFLASQVPF- 225 (265)
T ss_dssp HH------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHTCSS-
T ss_pred cC------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCcccccc--CHHHHHHHHHcCCC-
Confidence 53 1235678999999999999999877 489999999999988733210 00011111111110
Q ss_pred EEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 298 VYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 298 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
...+++++|+|++++.++++. ...|+.+++.++..
T Consensus 226 ----------~~~~~~~~dva~~~~~l~~~~--~~~G~~i~vdgG~~ 260 (265)
T 2o23_A 226 ----------PSRLGDPAEYAHLVQAIIENP--FLNGEVIRLDGAIR 260 (265)
T ss_dssp ----------SCSCBCHHHHHHHHHHHHHCT--TCCSCEEEESTTCC
T ss_pred ----------cCCCCCHHHHHHHHHHHhhcC--ccCceEEEECCCEe
Confidence 023789999999999998754 57889999988754
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-27 Score=213.49 Aligned_cols=226 Identities=14% Similarity=0.104 Sum_probs=165.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC-CCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN-FNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+++||||+|+||++++++|+++|++|++++| +.+..+...+.. .....++.++.+|++|.++++++++.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEI---KKLGSDAIAVRADVANAEDVTNMVKQTVD 78 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH---HHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH---HhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998 332111111111 112357889999999999999988864
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~----------- 146 (246)
T 2uvd_A 79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRH-GRIVNIASVVGVT----------- 146 (246)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHH-----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECCHHhcC-----------
Confidence 689999999986431 2334566789999999777777653 4443 4999999986542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..++...|+.||.+.+.+++.++.+ +|+++++|+||.+.++...... ......+....+ ...
T Consensus 147 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~p------------~~~ 211 (246)
T 2uvd_A 147 -GNPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLD--ENIKAEMLKLIP------------AAQ 211 (246)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCC--TTHHHHHHHTCT------------TCS
T ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcC--HHHHHHHHhcCC------------CCC
Confidence 1234578999999999999998876 4899999999999987432110 011112222211 123
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+++++|+|++++.++........|+.+++.+|.
T Consensus 212 ~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 212 FGEAQDIANAVTFFASDQSKYITGQTLNVDGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHcCchhcCCCCCEEEECcCc
Confidence 789999999999999765445678999998764
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-26 Score=211.43 Aligned_cols=217 Identities=16% Similarity=0.091 Sum_probs=165.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+||||||+||||+++++.|+++|++|++++|+.+. ..++.++.+|++|.++++++++.+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 71 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG--------------EAKYDHIECDVTNPDQVKASIDHIFKE 71 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC--------------SCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc--------------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999996542 356889999999999999988764
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+ .++||++||...+.
T Consensus 72 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~------------ 138 (264)
T 2dtx_A 72 YGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSR-DPSIVNISSVQASI------------ 138 (264)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEECCGGGTS------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECCchhcc------------
Confidence 689999999986432 23345668899999999998888754 23 24999999988753
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCC-------Ch--HHHHHHHHHcCCCeEEEecCC
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIYG--LSITGLRFFTVYGPWGRPD-------MA--YFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~~vrp~~v~G~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~ 303 (421)
..++...|+.||.+.+.+++.++.+++ +++++|+||.+.++..... .. .......+...
T Consensus 139 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 208 (264)
T 2dtx_A 139 ITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHE---------- 208 (264)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHH----------
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhc----------
Confidence 224567899999999999999998865 9999999999987621100 00 00011111111
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.....+++++|+|++++.++........|+++++.++.
T Consensus 209 --~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 246 (264)
T 2dtx_A 209 --HPMQRIGKPQEVASAVAFLASREASFITGTCLYVDGGL 246 (264)
T ss_dssp --STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --CCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCc
Confidence 11234789999999999999876556779999998764
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-26 Score=208.12 Aligned_cols=228 Identities=16% Similarity=0.101 Sum_probs=171.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++++.|+++|++|++.+|+.+..+ ..+. ......++.++.+|++|+++++++++++
T Consensus 4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~-~~~~---~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~ 79 (258)
T 4gkb_A 4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGA-FLDA---LAQRQPRATYLPVELQDDAQCRDAVAQTIA 79 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHH-HHHH---HHHHCTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHH-HHHH---HHhcCCCEEEEEeecCCHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999776421 1111 1223467899999999999998888765
Q ss_pred ---CCcEEEEcccccCc---hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV---RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~---~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|++|||||+... +.+.++++..+++|+.|+.++.+++. +.+ ++||++||...+.
T Consensus 80 ~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--G~IVnisS~~~~~------------ 145 (258)
T 4gkb_A 80 TFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR--GAIVNISSKTAVT------------ 145 (258)
T ss_dssp HHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTHHHH------------
T ss_pred HhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEeehhhcc------------
Confidence 79999999998543 22345567889999999888888763 333 4999999987542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC----hHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM----AYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
..+....|+.||.+.+.+++.++.+ +||+|++|.||.|..|-..... ........+....|. +
T Consensus 146 ~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl------g---- 215 (258)
T 4gkb_A 146 GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL------G---- 215 (258)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT------T----
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC------C----
Confidence 2234578999999999999999987 4899999999999887432110 001122233333221 0
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|.+++.++........|+++.|.+|-
T Consensus 216 -~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 216 -RRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGGY 250 (258)
T ss_dssp -TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -CCCcCHHHHHHHHHHHhCchhcCccCCeEEECCCc
Confidence 12567899999999999877677899999998774
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=211.81 Aligned_cols=224 Identities=14% Similarity=0.045 Sum_probs=164.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+||||||+|+||++++++|+++|++|++++|+.+. ...... .. ..++.++.+|++|.++++++++.+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~-~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE----GAATAR-EL-GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH-TT-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH-Hh-CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999995421 111111 11 346889999999999999988754
Q ss_pred --CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHH----HHhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEA----CKSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~----~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||.... ..+.++++..+++|+.|+.+++++ +++.+. ++||++||...+.
T Consensus 77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------------ 143 (254)
T 1hdc_A 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGG-GSIVNISSAAGLM------------ 143 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEECchhhcc------------
Confidence 68999999998643 123345667899999998755554 455553 4999999987753
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
..++...|+.||.+.+.+++.++.+ .|+++++|+||.++++.. ..... .....+ ........+
T Consensus 144 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~----------~~~~~-~~~~~~---~~~~p~~~~ 209 (254)
T 1hdc_A 144 GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT----------AETGI-RQGEGN---YPNTPMGRV 209 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----------HHHTC-CCSTTS---CTTSTTSSC
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc----------cccch-hHHHHH---HhcCCCCCC
Confidence 1245678999999999999999887 489999999999998621 11111 000000 001112236
Q ss_pred c-cHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 312 T-YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 312 i-~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
. +++|+|++++.++........|+.+++.++..
T Consensus 210 ~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 210 GNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGWT 243 (254)
T ss_dssp B-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCCHHHHHHHHHHHhCchhcCCCCCEEEECCCcc
Confidence 7 99999999999998764567799999988753
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=213.52 Aligned_cols=240 Identities=10% Similarity=0.040 Sum_probs=165.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||++++++|+++|++|++++|+.+..+...+.... .....++.++.+|++|+++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIAS-LVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-HSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999964322211111110 001237899999999999999888743
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
.+|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 83 ~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------------ 149 (260)
T 2z1n_A 83 LGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGW-GRMVYIGSVTLLR------------ 149 (260)
T ss_dssp TTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS------------
T ss_pred hcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECchhhcC------------
Confidence 379999999975431 2334566789999999877777663 4443 4999999988763
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+.++...|+.||.+.+.+++.++.++ |+++++|+||.|++|.......................+. .......+
T Consensus 150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~r~ 226 (260)
T 2z1n_A 150 PWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMA---SRIPMGRV 226 (260)
T ss_dssp CCTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC--------------------------CCTTSSC
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHH---hcCCCCCc
Confidence 22346789999999999999998874 8999999999999985431000000000000000000000 01112347
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+++|+|++++.++........|+++++.++.
T Consensus 227 ~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 227 GKPEELASVVAFLASEKASFITGAVIPVDGGA 258 (260)
T ss_dssp CCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 89999999999999875456789999998763
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-27 Score=215.03 Aligned_cols=225 Identities=13% Similarity=0.093 Sum_probs=163.9
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|++|||||+|+||.+++++|+++|++|++++|+.+ .... ....++.++++|++|.++++++++.+
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~-------~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE-------DVVA--DLGDRARFAAADVTDEAAVASALDLAE 75 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH-------HHHH--HTCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH-------HHHH--hcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999998321 1111 12467999999999999999988754
Q ss_pred ---CCcEEEEcccccCch--------hhccCCchhhhhhHHHHHHHHHHHHhc-----------CCCCeEEEEccccccC
Q 043169 165 ---AFTHVMHLAAQAGVR--------YAMQNPHSYVHSNIAGLVTLLEACKSA-----------NPQPSIVWASSSSVYG 222 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~--------~~~~~~~~~~~~N~~g~~~l~~~~~~~-----------~~~~riV~~SS~~v~g 222 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. ...++||++||...+.
T Consensus 76 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 155 (257)
T 3tl3_A 76 TMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD 155 (257)
T ss_dssp HHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C
T ss_pred HhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC
Confidence 689999999986431 234456789999999999999988643 2234899999987652
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEE
Q 043169 223 LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVY 299 (421)
Q Consensus 223 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (421)
...+...|+.||.+.+.+++.++.+ +||++++|+||.|.++-.... .......+....+.
T Consensus 156 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~--- 218 (257)
T 3tl3_A 156 ------------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASL--PEEARASLGKQVPH--- 218 (257)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC-----CHHHHHHHHHTSSS---
T ss_pred ------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhc--cHHHHHHHHhcCCC---
Confidence 1234578999999999999999887 489999999999998743321 11222222222211
Q ss_pred ecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 300 RGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 300 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
...+.+++|+|++++.+++.. ...|+++++.+|..+.
T Consensus 219 --------~~r~~~p~dva~~v~~l~s~~--~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 --------PSRLGNPDEYGALAVHIIENP--MLNGEVIRLDGAIRMA 255 (257)
T ss_dssp --------SCSCBCHHHHHHHHHHHHHCT--TCCSCEEEESTTC---
T ss_pred --------CCCccCHHHHHHHHHHHhcCC--CCCCCEEEECCCccCC
Confidence 124778999999999999864 6889999998876543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-27 Score=216.59 Aligned_cols=236 Identities=11% Similarity=0.022 Sum_probs=165.2
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.++++|++|||||+|+||.+++++|+++|++|++++|.....+...+..........++.++.+|++|.++++++++.+
T Consensus 6 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 85 (262)
T 3ksu_A 6 YHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFA 85 (262)
T ss_dssp CSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999988543211111111111122457899999999999999998865
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++.+.. ..++||++||...+.
T Consensus 86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~------------ 153 (262)
T 3ksu_A 86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA------------ 153 (262)
T ss_dssp HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH------------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc------------
Confidence 789999999986432 2334456789999999999999997641 123999999987653
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
.......|+.||.+.+.+++.++.++ ||++++|+||.|.++..... ........+ ........+
T Consensus 154 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~----------~~~~~~~~~---~~~~~~~r~ 220 (262)
T 3ksu_A 154 YTGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQ----------ETKESTAFH---KSQAMGNQL 220 (262)
T ss_dssp HHCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTC----------C---------------CCCCS
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc----------CchHHHHHH---HhcCcccCC
Confidence 12345789999999999999999885 89999999999987521000 000000000 011223347
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
..++|+|++++.++.. .....|+++++.++....
T Consensus 221 ~~pedvA~~v~~L~s~-~~~itG~~i~vdGg~~~~ 254 (262)
T 3ksu_A 221 TKIEDIAPIIKFLTTD-GWWINGQTIFANGGYTTR 254 (262)
T ss_dssp CCGGGTHHHHHHHHTT-TTTCCSCEEEESTTCCCC
T ss_pred CCHHHHHHHHHHHcCC-CCCccCCEEEECCCccCC
Confidence 7899999999999887 556889999998876433
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=211.02 Aligned_cols=227 Identities=12% Similarity=0.074 Sum_probs=162.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||++++++|+++|++|++++|+.. +...... . ....++.++++|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~-~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA---PEAEAAI-R-NLGRRVLTVKCDVSQPGDVEAFGKQVIS 78 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC---HHHHHHH-H-HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCch---hHHHHHH-H-hcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999651 1111111 1 12357899999999999999888754
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~----------- 146 (249)
T 2ew8_A 79 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGW-GRIINLTSTTYWL----------- 146 (249)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGGS-----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-eEEEEEcchhhcc-----------
Confidence 689999999986431 233445678999999988888874 45443 4999999988763
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.++...|+.||.+.+.+++.++.++ |+++++|+||.|.++...... .... ......- . .....
T Consensus 147 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~-~~~~~~~-~---------~~~~~ 213 (249)
T 2ew8_A 147 -KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASA-LSAM-FDVLPNM-L---------QAIPR 213 (249)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------CT-T---------SSSCS
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhcc-ccch-hhHHHHh-h---------CccCC
Confidence 22456789999999999999998874 899999999999987422000 0000 0000000 0 11224
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+.+++|+|++++.++........|+++++.++.
T Consensus 214 ~~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 214 LQVPLDLTGAAAFLASDDASFITGQTLAVDGGM 246 (249)
T ss_dssp CCCTHHHHHHHHHHTSGGGTTCCSCEEEESSSC
T ss_pred CCCHHHHHHHHHHHcCcccCCCCCcEEEECCCc
Confidence 789999999999999765456779999998764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=213.27 Aligned_cols=219 Identities=8% Similarity=0.031 Sum_probs=153.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+||||.+++++|+++|++|++++|+.+..+........ ...++.++.+|++|.++++++++.+
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEA---AGGRIVARSLDARNEDEVTAFLNAADA 80 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEECcCCCHHHHHHHHHHHHh
Confidence 36889999999999999999999999999999999976654443333222 2467999999999999999999865
Q ss_pred --CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------------ 147 (252)
T 3h7a_A 81 HAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQ-GKIFFTGATASLR------------ 147 (252)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEEGGGTC------------
T ss_pred hCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECCHHHcC------------
Confidence 78999999998643 2234456678999999998888876 34442 4999999987652
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcE-EEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSI-TGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~-~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.+....|+.||.+.+.+++.++.++ ||++ ++++||.|.++..... ...... .. .......
T Consensus 148 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~--~~~~~~---------~~---~~~~~~~- 212 (252)
T 3h7a_A 148 GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRER--REQMFG---------KD---ALANPDL- 212 (252)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------------
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhcc--chhhhh---------hh---hhcCCcc-
Confidence 22456789999999999999999874 8999 8999999987633211 000000 00 0111223
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceE
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRI 336 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~ 336 (421)
+.+++|+|++++.++..+.....+++
T Consensus 213 ~~~pedvA~~~~~l~s~~~~~~~~~i 238 (252)
T 3h7a_A 213 LMPPAAVAGAYWQLYQQPKSAWTFEM 238 (252)
T ss_dssp -CCHHHHHHHHHHHHHCCGGGBCSEE
T ss_pred CCCHHHHHHHHHHHHhCchhcceeeE
Confidence 88999999999999986643333333
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=210.24 Aligned_cols=233 Identities=12% Similarity=0.014 Sum_probs=173.4
Q ss_pred ccCCCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhh
Q 043169 85 IHRSGGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
+.+++||++|||||+| +||.++++.|+++|++|++.+|+.+..++..+. .......++.++++|++|+++++++++
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~--~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKL--LEQLNQPEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH--HGGGTCSSCEEEECCTTCHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH--HHhcCCCcEEEEEccCCCHHHHHHHHH
Confidence 3468999999999877 999999999999999999999975433222111 112234578999999999999998887
Q ss_pred cc-----CCcEEEEcccccCchh--------hccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCC
Q 043169 163 AV-----AFTHVMHLAAQAGVRY--------AMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 163 ~~-----~~d~vi~~Ag~~~~~~--------~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~ 228 (421)
.+ ++|++|||||+..... ..+++...+++|+.++..+.+.+..... .++||++||....-
T Consensus 79 ~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~------ 152 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF------ 152 (256)
T ss_dssp HHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS------
T ss_pred HHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc------
Confidence 65 7899999999864321 1223345678999998888887754322 24999999977531
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.+....|+.||.+.+.+++.++.+ +||+|++|.||.|..|..........+.+.+.+..|..
T Consensus 153 ------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~-------- 218 (256)
T 4fs3_A 153 ------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLK-------- 218 (256)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTS--------
T ss_pred ------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCC--------
Confidence 2245678999999999999999987 48999999999998874433333344555555443321
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
-+..++|+|.+++.++........|+++.+.+|-
T Consensus 219 ----R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG~ 252 (256)
T 4fs3_A 219 ----RNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGF 252 (256)
T ss_dssp ----SCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ----CCcCHHHHHHHHHHHhCchhcCccCCEEEECcCH
Confidence 1456899999999999876667889999998763
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=220.98 Aligned_cols=236 Identities=16% Similarity=0.158 Sum_probs=173.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC-CCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN-NYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.+|+|+||||+|+||++++++|+++|++|++++|+. +...+..... .......+++++.+|++|.+++.++++++ |
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-l~~~~~~~v~~v~~D~~d~~~l~~a~~~~--d 79 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQL-REEFRSMGVTIIEGEMEEHEKMVSVLKQV--D 79 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHH-HHHHHHTTCEEEECCTTCHHHHHHHHTTC--S
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHH-HHHhhcCCcEEEEecCCCHHHHHHHHcCC--C
Confidence 357899999999999999999999999999999976 3222222111 11122367999999999999999999987 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCCC-CChHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQP-ASLYAAT 245 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~-~~~Y~~s 245 (421)
+|||+||... +.++.+++++|++.+ ++ +||+ | +||... +++... .+ ...| .+
T Consensus 80 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~s 133 (321)
T 3c1o_A 80 IVISALPFPM---------------ISSQIHIINAIKAAGNIK-RFLP-S---DFGCEE----DRIKPL-PPFESVL-EK 133 (321)
T ss_dssp EEEECCCGGG---------------SGGGHHHHHHHHHHCCCC-EEEC-S---CCSSCG----GGCCCC-HHHHHHH-HH
T ss_pred EEEECCCccc---------------hhhHHHHHHHHHHhCCcc-EEec-c---ccccCc----cccccC-CCcchHH-HH
Confidence 9999998631 455789999999988 65 8882 3 344211 121111 22 3579 99
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHH---HHHcCCCeEEEecCCCCcceeecccHHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTR---NILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL 322 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 322 (421)
|.++|.++++ .|++++++||+.++++ ....+.. ....++.+..+ ++++..++|+|++|+|++++
T Consensus 134 K~~~e~~~~~----~~~~~~~lrp~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~ 200 (321)
T 3c1o_A 134 KRIIRRAIEA----AALPYTYVSANCFGAY------FVNYLLHPSPHPNRNDDIVIY---GTGETKFVLNYEEDIAKYTI 200 (321)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEEHHH------HHHHHHCCCSSCCTTSCEEEE---TTSCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEeceeccc------cccccccccccccccCceEEe---cCCCcceeEeeHHHHHHHHH
Confidence 9999988864 5899999999998874 1122221 01234445555 56788999999999999999
Q ss_pred HhhhcCCCCCCceEEEecC-CCccCHHHHHHHHHHHhCCccccceec
Q 043169 323 GSLDTSAGPAPYRIFNLGN-TSPVTVPKLVNILERHLKVKAKKNVIE 368 (421)
Q Consensus 323 ~~l~~~~~~~~~~~~~i~~-~~~~t~~el~~~l~~~~g~~~~~~~~~ 368 (421)
.++..+ ...+++|++.+ ++.+|+.|+++.+.+.+|.+.+....+
T Consensus 201 ~~l~~~--~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~ 245 (321)
T 3c1o_A 201 KVACDP--RCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245 (321)
T ss_dssp HHHHCG--GGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEEC
T ss_pred HHHhCc--cccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCC
Confidence 999876 23478888876 478999999999999999887655443
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=211.49 Aligned_cols=225 Identities=15% Similarity=0.123 Sum_probs=166.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-C
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-A 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~ 165 (421)
++++|+++||||+|+||++++++|+++|++|++++|+.+..+. .....++.++.+|++|.++++++.+.. +
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE--------LEKYPGIQTRVLDVTKKKQIDQFANEVER 74 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG--------GGGSTTEEEEECCTTCHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH--------HHhccCceEEEeeCCCHHHHHHHHHHhCC
Confidence 3678999999999999999999999999999999985321110 111137889999999999999887765 6
Q ss_pred CcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.. ...
T Consensus 75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~-----------~~~ 142 (246)
T 2ag5_A 75 LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKS-GNIINMSSVASSVK-----------GVV 142 (246)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCSBTTTB-----------CCT
T ss_pred CCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEechHhCcC-----------CCC
Confidence 89999999986432 1234456789999999999998874 3343 49999999876531 111
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC----CChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 238 PASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRP----DMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+...|+.||.+.+.+++.++.+. |+++++|+||.+++|.... ..........+....+ ...
T Consensus 143 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 210 (246)
T 2ag5_A 143 NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQK------------TGR 210 (246)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCT------------TSS
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCC------------CCC
Confidence 45789999999999999998874 8999999999999873210 0000111222222111 123
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+.+++|+|++++.++........|+.+++.++.
T Consensus 211 ~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 211 FATAEEIAMLCVYLASDESAYVTGNPVIIDGGW 243 (246)
T ss_dssp CEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred CCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 778999999999999766556779999998764
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-27 Score=221.08 Aligned_cols=238 Identities=16% Similarity=0.206 Sum_probs=173.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC-ChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY-DPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+|+|+||||+|+||+++++.|+++|++|++++|+.+.. .+.... ........+++++.+|++|.+++.++++++ |+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~-~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~--d~ 80 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQ-LLESFKASGANIVHGSIDDHASLVEAVKNV--DV 80 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHH-HHHHHHTTTCEEECCCTTCHHHHHHHHHTC--SE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHH-HHHHHHhCCCEEEEeccCCHHHHHHHHcCC--CE
Confidence 57899999999999999999999999999999976543 122111 112223568999999999999999999987 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCCC-CChHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQP-ASLYAATK 246 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~-~~~Y~~sK 246 (421)
|||+||... +.++.+++++|++.+ ++ |||+ |+ ||... ++.... .| ...| .+|
T Consensus 81 vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S~---~g~~~----~~~~~~-~p~~~~y-~sK 134 (308)
T 1qyc_A 81 VISTVGSLQ---------------IESQVNIIKAIKEVGTVK-RFFP-SE---FGNDV----DNVHAV-EPAKSVF-EVK 134 (308)
T ss_dssp EEECCCGGG---------------SGGGHHHHHHHHHHCCCS-EEEC-SC---CSSCT----TSCCCC-TTHHHHH-HHH
T ss_pred EEECCcchh---------------hhhHHHHHHHHHhcCCCc-eEee-cc---cccCc----cccccC-CcchhHH-HHH
Confidence 999998531 345689999999988 65 8884 43 44211 121222 23 3568 999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
.++|.++++ .|++++++||+.++|+....-. ........++.+.++ ++++..++|+|++|+|++++.++.
T Consensus 135 ~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~~l~ 204 (308)
T 1qyc_A 135 AKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLA---QAGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIKAVD 204 (308)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEEHHHHTTTTT---CTTCSSCCSSEEEEE---TTSCCEEEEECHHHHHHHHHTTSS
T ss_pred HHHHHHHHh----cCCCeEEEEeceeccccccccc---cccccCCCCCceEEe---cCCCceEEEecHHHHHHHHHHHHh
Confidence 999988764 5899999999999875221100 000001233444554 567889999999999999999998
Q ss_pred cCCCCCCceEEEecCC-CccCHHHHHHHHHHHhCCccccceec
Q 043169 327 TSAGPAPYRIFNLGNT-SPVTVPKLVNILERHLKVKAKKNVIE 368 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~~-~~~t~~el~~~l~~~~g~~~~~~~~~ 368 (421)
.+ ...+++|++.++ +.+|+.|+++.+.+.+|.+.+....|
T Consensus 205 ~~--~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 245 (308)
T 1qyc_A 205 DP--RTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245 (308)
T ss_dssp CG--GGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred Cc--cccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCC
Confidence 76 334688888764 67999999999999999887654443
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=214.13 Aligned_cols=227 Identities=13% Similarity=0.034 Sum_probs=166.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
+|++|||||+|+||++++++|+++|++|++++|+.+.. ......... ....++.++.+|++|.++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEE--QAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKL 79 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHH--HHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchH--HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999964320 011111111 12357899999999999999888754
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+..++||++||...+. .
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~ 147 (258)
T 3a28_C 80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ------------G 147 (258)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS------------C
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc------------C
Confidence 689999999986431 23345667899999999999988754 34324999999987653 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChH-----------HHHHHHHHcCCCeEEEec
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAY-----------FSFTRNILQGKPITVYRG 301 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 301 (421)
.++...|+.||.+.+.+++.++.++ |+++++|+||.|.++.... .. ......+....
T Consensus 148 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------- 218 (258)
T 3a28_C 148 FPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQ--IDAELSKINGKPIGENFKEYSSSI------- 218 (258)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHH--HHHHHHHHHCCCTTHHHHHHHTTC-------
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhh--hhhhhccccCCchHHHHHHHHhcC-------
Confidence 2356789999999999999998774 8999999999998762110 00 00111111111
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
....+.+++|+|++++.++........|+++++.+|..
T Consensus 219 -----p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 256 (258)
T 3a28_C 219 -----ALGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGGML 256 (258)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSC
T ss_pred -----CCCCccCHHHHHHHHHHHhCcccCCCCCCEEEECCCEe
Confidence 11237899999999999998765567899999988754
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=217.41 Aligned_cols=227 Identities=11% Similarity=0.088 Sum_probs=166.2
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.++++|+|+||||+|+||+++++.|+++|++|++++|+.+.. ....... ....++.++.+|++|.++++++++.+
T Consensus 40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 115 (285)
T 2c07_A 40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSC----DSVVDEIKSFGYESSGYAGDVSKKEEISEVINKI 115 (285)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHH----HHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHH----HHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHH
Confidence 446789999999999999999999999999999988753211 1111111 12357889999999999999988754
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 116 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~--------- 185 (285)
T 2c07_A 116 LTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY-GRIINISSIVGLT--------- 185 (285)
T ss_dssp HHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHH---------
T ss_pred HHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CEEEEECChhhcc---------
Confidence 689999999986431 2334556789999999888887764 3443 4999999986542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
..++...|+.||.+.+.+++.++.+. |+++++|+||.+.++..... ...+...+....+ .
T Consensus 186 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~ 248 (285)
T 2c07_A 186 ---GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI--SEQIKKNIISNIP------------A 248 (285)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C--CHHHHHHHHTTCT------------T
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhc--CHHHHHHHHhhCC------------C
Confidence 12346789999999999999998774 89999999999998743321 1222233333221 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..+++++|+|++++.++........|+.+++.+|.
T Consensus 249 ~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 249 GRMGTPEEVANLACFLSSDKSGYINGRVFVIDGGL 283 (285)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCCc
Confidence 23789999999999999875445678999998764
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=213.02 Aligned_cols=224 Identities=13% Similarity=0.102 Sum_probs=169.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHH-HHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKAR-KALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+.+|+||||||+||||++++++|+++|++|++++++.. ....... .......++.++.+|++|.++++++++.+
T Consensus 24 l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~---~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (267)
T 4iiu_A 24 AMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDA---AGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIA 100 (267)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCch---HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999987665331 1111111 11123467999999999999999988865
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH-----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK-----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~-----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ .++||++||...+.
T Consensus 101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~---------- 169 (267)
T 4iiu_A 101 QHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQ-GGRIITLSSVSGVM---------- 169 (267)
T ss_dssp HHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCHHHHH----------
T ss_pred HhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEcchHhcc----------
Confidence 789999999986532 2344567889999999999999873 333 34999999976542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
..++...|+.||.+.+.+++.++.++ |+++++|+||.|.++..... ......+....+ ..
T Consensus 170 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~p------------~~ 232 (267)
T 4iiu_A 170 --GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME---ESALKEAMSMIP------------MK 232 (267)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC---HHHHHHHHHTCT------------TC
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc---HHHHHHHHhcCC------------CC
Confidence 22456789999999999999998874 89999999999999854432 233344444332 12
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.+.+++|+|++++.++........|+++++.+|
T Consensus 233 ~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 233 RMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 367899999999999987655678999999876
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=213.95 Aligned_cols=228 Identities=16% Similarity=0.113 Sum_probs=164.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||++++++|+++|++|++++|+.+. ....... . ..++.++++|++|.++++++++.+
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAA----GQQLAAE-L-GERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHH----HHHHHHH-H-CTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHH-c-CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999985421 1111111 1 357899999999999999988775
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.|+.++.+++ ++.+ ++||++||...+.
T Consensus 77 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~----------- 143 (253)
T 1hxh_A 77 RLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVSSWL----------- 143 (253)
T ss_dssp HHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCGGGTS-----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcchhhcC-----------
Confidence 689999999986432 233456678999999877777655 3444 4999999988763
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---h--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---Y--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.++...|+.||.+.+.+++.++.+ + |+++++|+||.+++|....... ............ .....
T Consensus 144 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~--------~~~p~ 213 (253)
T 1hxh_A 144 -PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLP-KGVSKEMVLHDP--------KLNRA 213 (253)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSC-TTCCHHHHBCBT--------TTBTT
T ss_pred -CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccc-hhhhHHHHhhhh--------ccCcc
Confidence 2234578999999999999998877 4 8999999999999872110000 000000011000 01112
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..+.+++|+|++++.++..+.....|+.+++.++.
T Consensus 214 ~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 214 GRAYMPERIAQLVLFLASDESSVMSGSELHADNSI 248 (253)
T ss_dssp CCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSSC
T ss_pred CCCCCHHHHHHHHHHHcCccccCCCCcEEEECCCc
Confidence 34789999999999999876556779999998764
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=220.03 Aligned_cols=230 Identities=20% Similarity=0.218 Sum_probs=171.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+|+||||+|+||++++++|+++|++|++++|+.+...... ......+++++.+|++|.+++.++++++ |+||
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~-----~~l~~~~v~~v~~Dl~d~~~l~~a~~~~--d~vi 84 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLL-----DEFQSLGAIIVKGELDEHEKLVELMKKV--DVVI 84 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHH-----HHHHHTTCEEEECCTTCHHHHHHHHTTC--SEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHH-----HHhhcCCCEEEEecCCCHHHHHHHHcCC--CEEE
Confidence 58999999999999999999999999999999764111111 1112357899999999999999999986 9999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCCC-CChHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQP-ASLYAATKKA 248 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~-~~~Y~~sK~~ 248 (421)
|+|+... +.++.+++++|++.+ ++ +||+ | +||... ++.... .| ...| .+|.+
T Consensus 85 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~sK~~ 138 (318)
T 2r6j_A 85 SALAFPQ---------------ILDQFKILEAIKVAGNIK-RFLP-S---DFGVEE----DRINAL-PPFEALI-ERKRM 138 (318)
T ss_dssp ECCCGGG---------------STTHHHHHHHHHHHCCCC-EEEC-S---CCSSCT----TTCCCC-HHHHHHH-HHHHH
T ss_pred ECCchhh---------------hHHHHHHHHHHHhcCCCC-EEEe-e---ccccCc----ccccCC-CCcchhH-HHHHH
Confidence 9998531 445789999999988 65 8884 3 344221 111111 12 3468 99999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
+|.++++ .|++++++||+.+++. ....+......++.+.++ ++++..++|+|++|+|++++.++..+
T Consensus 139 ~e~~~~~----~~~~~~~lr~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~~l~~~ 205 (318)
T 2r6j_A 139 IRRAIEE----ANIPYTYVSANCFASY------FINYLLRPYDPKDEITVY---GTGEAKFAMNYEQDIGLYTIKVATDP 205 (318)
T ss_dssp HHHHHHH----TTCCBEEEECCEEHHH------HHHHHHCTTCCCSEEEEE---TTSCCEEEEECHHHHHHHHHHHTTCG
T ss_pred HHHHHHh----cCCCeEEEEcceehhh------hhhhhccccCCCCceEEe---cCCCceeeEeeHHHHHHHHHHHhcCc
Confidence 9988764 6899999999988763 222232222344445554 56788999999999999999999876
Q ss_pred CCCCCceEEEecC-CCccCHHHHHHHHHHHhCCccccceec
Q 043169 329 AGPAPYRIFNLGN-TSPVTVPKLVNILERHLKVKAKKNVIE 368 (421)
Q Consensus 329 ~~~~~~~~~~i~~-~~~~t~~el~~~l~~~~g~~~~~~~~~ 368 (421)
...+++|++.+ ++.+|+.|+++.+.+.+|.+.+...++
T Consensus 206 --~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (318)
T 2r6j_A 206 --RALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244 (318)
T ss_dssp --GGTTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred --cccCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence 23467888875 478999999999999999887654443
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=213.58 Aligned_cols=228 Identities=13% Similarity=0.052 Sum_probs=163.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.+++|++|||||+||||++++++|+++|++|++.+++... ..+..... .....++.++.+|++|.++++++++.+
T Consensus 24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 100 (267)
T 3u5t_A 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAA---AAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAE 100 (267)
T ss_dssp ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999998664431 11111111 123457899999999999999998865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||+.... ...++++..+++|+.|+.++++++.+... .++||++||...+. .
T Consensus 101 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~ 168 (267)
T 3u5t_A 101 EAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL------------L 168 (267)
T ss_dssp HHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH------------C
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc------------C
Confidence 789999999986432 12334567889999999999998865321 23999999987642 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.+....|+.||.+.+.+++.++.++ ||++++|+||.|.++..... ........+.... ....+.
T Consensus 169 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~------------p~~r~~ 235 (267)
T 3u5t_A 169 HPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEG-KSDEVRDRFAKLA------------PLERLG 235 (267)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC------------CHHHHHTSS------------TTCSCB
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcccccc-CCHHHHHHHHhcC------------CCCCCc
Confidence 2456789999999999999999884 89999999999988732210 0011112222222 123477
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.++|+|++++.++........|+++++.+|
T Consensus 236 ~pedvA~~v~~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 236 TPQDIAGAVAFLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp CHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred CHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 899999999999987656678999999875
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=215.86 Aligned_cols=229 Identities=14% Similarity=0.052 Sum_probs=170.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||.+++++|+++|++|++++|+.+..+........ ...++.++.+|++|.++++++++.+
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 106 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIA---SGGTAQELAGDLSEAGAGTDLIERAEA 106 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHH---TTCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999987665544433322 3467899999999999998888765
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~Iv~isS~~~~~------------ 173 (275)
T 4imr_A 107 IAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKW-GRVVSIGSINQLR------------ 173 (275)
T ss_dssp HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS------------
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECCHHhCC------------
Confidence 789999999985432 2334556789999999999999873 3443 4999999988753
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCh-HHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMA-YFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+..+...|+.||.+.+.+++.++.++ ||++++|+||.|.++....... .......+.... ....-
T Consensus 174 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~-----------~p~~r 242 (275)
T 4imr_A 174 PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTL-----------NWMGR 242 (275)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHH-----------STTCS
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhc-----------CccCC
Confidence 22345679999999999999999885 8999999999998762110000 001111111111 00112
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+..++|+|++++.++........|+++++.+|
T Consensus 243 ~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 274 (275)
T 4imr_A 243 AGRPEEMVGAALFLASEACSFMTGETIFLTGG 274 (275)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred CcCHHHHHHHHHHHcCcccCCCCCCEEEeCCC
Confidence 56789999999999987656778999999875
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=212.84 Aligned_cols=230 Identities=12% Similarity=0.019 Sum_probs=168.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHH-HHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKA-RKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++|+++||||+|+||++++++|+++|++|++++++.. ...... ........++.++.+|++|.++++++++.+
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 98 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERN---DHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVL 98 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCH---HHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCch---HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999986432 111111 111223467999999999999999998865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.. .+. ++||++||...+.
T Consensus 99 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~---------- 167 (269)
T 3gk3_A 99 ADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRF-GRIVNIGSVNGSR---------- 167 (269)
T ss_dssp HHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHH----------
T ss_pred HHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEeCChhhcc----------
Confidence 789999999986432 23345667899999999998888743 332 4999999977642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
...+...|+.||.+.+.+++.++.++ |+++++|+||.|.++..... . ........ .......
T Consensus 168 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~----~~~~~~~~-------~~~~~~~ 232 (269)
T 3gk3_A 168 --GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAV--P----QDVLEAKI-------LPQIPVG 232 (269)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------------CCS-------GGGCTTS
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhh--c----hhHHHHHh-------hhcCCcC
Confidence 22456789999999999999998874 89999999999998743321 0 00001000 0112233
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
.+.+++|+|++++.++........|+++++.+|..+
T Consensus 233 ~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~ 268 (269)
T 3gk3_A 233 RLGRPDEVAALIAFLCSDDAGFVTGADLAINGGMHM 268 (269)
T ss_dssp SCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTSCC
T ss_pred CccCHHHHHHHHHHHhCCCcCCeeCcEEEECCCEeC
Confidence 477899999999999987756678999999988654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=210.95 Aligned_cols=226 Identities=18% Similarity=0.165 Sum_probs=169.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+++||||+|+||.+++++|+++|++|++++|+.+. ..... .. ...++.++.+|++|.++++++++++
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~-~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL----LAEAV-AA-LEAEAIAVVADVSDPKAVEAVFAEALE 76 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHH-HT-CCSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHH-HH-hcCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999995321 11111 11 1257889999999999999988775
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+... .++||++||...++ .
T Consensus 77 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-------------~ 143 (263)
T 2a4k_A 77 EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-------------A 143 (263)
T ss_dssp HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-------------H
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC-------------C
Confidence 689999999986432 12334567899999999999999876531 24999999988752 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
++...|+.||.+.+.+++.++.+. |+++++|+||.|.++..... .......+....+ ...+.+
T Consensus 144 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~p------------~~~~~~ 209 (263)
T 2a4k_A 144 FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL--PPWAWEQEVGASP------------LGRAGR 209 (263)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS--CHHHHHHHHHTST------------TCSCBC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc--CHHHHHHHHhcCC------------CCCCcC
Confidence 235689999999999999998774 89999999999998743221 1122222322221 123678
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
++|+|++++.++........|+.+++.++..+
T Consensus 210 p~dvA~~v~~l~s~~~~~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 210 PEEVAQAALFLLSEESAYITGQALYVDGGRSI 241 (263)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTTTT
T ss_pred HHHHHHHHHHHhCccccCCcCCEEEECCCccc
Confidence 99999999999987655677999999887643
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=210.63 Aligned_cols=215 Identities=18% Similarity=0.134 Sum_probs=165.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----C
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----A 165 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----~ 165 (421)
+|+||||||+|+||++++++|+++|++|++++|+.+ . .++.++.+|++|.++++++++.+ +
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~--------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 66 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G--------------EDLIYVEGDVTREEDVRRAVARAQEEAP 66 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S--------------SSSEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c--------------cceEEEeCCCCCHHHHHHHHHHHHhhCC
Confidence 589999999999999999999999999999999653 1 24589999999999999998854 6
Q ss_pred CcEEEEcccccCchhh----cc----CCchhhhhhHHHHHHHHHHHHhcCC---------CCeEEEEccccccCCCCCCC
Q 043169 166 FTHVMHLAAQAGVRYA----MQ----NPHSYVHSNIAGLVTLLEACKSANP---------QPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~----~~----~~~~~~~~N~~g~~~l~~~~~~~~~---------~~riV~~SS~~v~g~~~~~~ 228 (421)
+|+||||||....... .+ +++..+++|+.++.++++++.+... .++||++||...+..
T Consensus 67 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----- 141 (242)
T 1uay_A 67 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG----- 141 (242)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC-----
T ss_pred ceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC-----
Confidence 7999999998643211 11 4567899999999999998865321 129999999887641
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
..+...|+.||.+.+.+++.++.+. |+++++|+||.++++..... ...+...+....+.
T Consensus 142 -------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~--------- 203 (242)
T 1uay_A 142 -------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL--PEKAKASLAAQVPF--------- 203 (242)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS--CHHHHHHHHTTCCS---------
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc--chhHHHHHHhhCCC---------
Confidence 2356789999999999999998774 89999999999999742211 11223333333221
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
...+++++|+|++++.++... ...|+.|++.++..++
T Consensus 204 --~~~~~~~~dva~~~~~l~~~~--~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 204 --PPRLGRPEEYAALVLHILENP--MLNGEVVRLDGALRMA 240 (242)
T ss_dssp --SCSCCCHHHHHHHHHHHHHCT--TCCSCEEEESTTCCCC
T ss_pred --cccCCCHHHHHHHHHHHhcCC--CCCCcEEEEcCCeecC
Confidence 023789999999999999873 5678999999876543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=215.26 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=157.7
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+..+++|+||||||+||||.+++++|+++|++|++++|+.+..+....... ....++.++.+|++|.++++++++.+
T Consensus 26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (301)
T 3tjr_A 26 LSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLR---GQGFDAHGVVCDVRHLDEMVRLADEA 102 (301)
T ss_dssp CCCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred HhccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHH
Confidence 444789999999999999999999999999999999996543222222111 12457899999999999999998865
Q ss_pred -----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||+... ..+.++++..+++|+.|+.++++++. +.+..++||++||...+.
T Consensus 103 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 173 (301)
T 3tjr_A 103 FRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV--------- 173 (301)
T ss_dssp HHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS---------
T ss_pred HHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC---------
Confidence 78999999998643 22344566789999999999999873 333234999999988752
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHH-----HHcCCCeEEEecCC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRN-----ILQGKPITVYRGKN 303 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 303 (421)
+.++...|+.||.+.+.+++.++.+. |+++++|+||.|.++-. ...... .....+...+ +
T Consensus 174 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~------~~~~~~~~~~~~~~~~~~~~~---~ 241 (301)
T 3tjr_A 174 ---PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLV------SNSERIRGADYGMSATPEGAF---G 241 (301)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHH------HHHHHHC------------------
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccc------cccccccchhhccccChhhhc---c
Confidence 22456789999999999999998874 89999999999987621 111000 0001111111 1
Q ss_pred CCcceeecccHHHHHHHHHHhhhcC
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
.......+++++|+|++++.+++.+
T Consensus 242 ~~~~~~~~~~pedvA~~i~~~l~~~ 266 (301)
T 3tjr_A 242 PLPTQDESVSADDVARLTADAILAN 266 (301)
T ss_dssp -------CCCHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCHHHHHHHHHHHHhcC
Confidence 1223456899999999999999877
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=209.28 Aligned_cols=229 Identities=17% Similarity=0.102 Sum_probs=165.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+|+||||+|+||++++++|+++|++|++++|+.+. ............++.++.+|++|.+++.++++.+
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDV----GEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEK 78 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999995421 1111111111257899999999999999988864
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... ...++++..+++|+.|+.++++++ ++.+..++||++||...+.
T Consensus 79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------- 147 (251)
T 1zk4_A 79 AFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV----------- 147 (251)
T ss_dssp HHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS-----------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhcc-----------
Confidence 579999999976431 123345678999999987776665 3444324999999988763
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
..++...|+.||.+.+.+++.++.+ .|+++++++||.++++....... ....... .. ....
T Consensus 148 -~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~--~~~~~~~-~~----------~~~~ 213 (251)
T 1zk4_A 148 -GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG--AEEAMSQ-RT----------KTPM 213 (251)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT--HHHHHTS-TT----------TCTT
T ss_pred -CCCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCc--hhhhHHH-hh----------cCCC
Confidence 1235678999999999999988764 48999999999999873221000 0000000 00 1112
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..+++++|+|++++.++........|+.+++.++..
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 214 GHIGEPNDIAYICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHcCcccccccCcEEEECCCcc
Confidence 348899999999999997654456789999988753
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-27 Score=219.93 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=168.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh--hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL--LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.+++|+|+||||+||||++++++|+++|++|++++|+.+..+.......... ....++.++.+|++|.++++++++.+
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 94 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 94 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence 4688999999999999999999999999999999996432221111111100 02457899999999999999998874
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||..... ...++++..+++|+.|+.++++++.+. + .++||++||...++
T Consensus 95 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~--------- 164 (303)
T 1yxm_A 95 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPTKAG--------- 164 (303)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCCTTC---------
T ss_pred HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCeEEEEEeecccC---------
Confidence 689999999965321 123345678999999999999987542 2 23899999987321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCC--CCCChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWG--RPDMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
.+....|+.+|.+.+.+++.++.+. |+++++|+||.|+||.. ........+...+... .
T Consensus 165 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~ 228 (303)
T 1yxm_A 165 ----FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQK------------I 228 (303)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGG------------S
T ss_pred ----CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhc------------C
Confidence 2345789999999999999998874 89999999999999832 1110000111111111 1
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
....+.+++|+|++++.++........|+.+++.++..+
T Consensus 229 p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~~~ 267 (303)
T 1yxm_A 229 PAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 267 (303)
T ss_dssp TTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred cccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCCeec
Confidence 112478899999999999976544577999999987654
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=212.54 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=160.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhhcCCceEE-EEcccCCHHHHHHHhhcc---
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGL-DNFNNYYDPSLKKARKALLNNHGVFV-IEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~-~~~Dl~d~~~~~~~~~~~--- 164 (421)
+|+|+||||+|+||++++++|+++|++|+++ +|+.+..+...... .....++.+ +.+|++|.++++++++.+
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEA---RRRGSPLVAVLGANLLEAEAATALVHQAAEV 77 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHH---HHTTCSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH---HhcCCceEEEEeccCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999998 77432211111111 112345666 999999999999988753
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHH----HHhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEA----CKSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~----~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ...++++..+++|+.|+.+++++ +++.+. ++||++||...+.
T Consensus 78 ~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~------------ 144 (245)
T 2ph3_A 78 LGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARF-GRIVNITSVVGIL------------ 144 (245)
T ss_dssp HTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHH------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC-CEEEEEeChhhcc------------
Confidence 679999999986431 23345567899999996665554 445554 4999999976432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
..++...|+.||.+.+.+++.++++. |+++++++||.++++..... ...+...+....+ ...+
T Consensus 145 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~~~~ 210 (245)
T 2ph3_A 145 GNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERL--PQEVKEAYLKQIP------------AGRF 210 (245)
T ss_dssp CCSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS--CHHHHHHHHHTCT------------TCSC
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhc--CHHHHHHHHhcCC------------CCCC
Confidence 11345789999999999999998875 89999999999998732211 1122222322221 1347
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
++++|+|++++.++..+.....|+.|++.++.
T Consensus 211 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 211 GRPEEVAEAVAFLVSEKAGYITGQTLCVDGGL 242 (245)
T ss_dssp BCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred cCHHHHHHHHHHHhCcccccccCCEEEECCCC
Confidence 89999999999999765445668999998764
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-26 Score=211.88 Aligned_cols=229 Identities=14% Similarity=0.042 Sum_probs=168.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||++++++|+++|++|++++|+.+..+....... ....++.++.+|++|.++++++++.+
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 107 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQK---TYGVHSKAYKCNISDPKSVEETISQQEK 107 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHH---HHCSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcceEEEeecCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999997654322221111 12357899999999999999988764
Q ss_pred ---CCcEEEEcccccCc------hhhccCCchhhhhhHHH----HHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV------RYAMQNPHSYVHSNIAG----LVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g----~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||.... ....++++..+++|+.| +.++++.+++.+. ++||++||...+...
T Consensus 108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~~------- 179 (279)
T 3ctm_A 108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGK-GSLIITSSISGKIVN------- 179 (279)
T ss_dssp HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCCTTSCC--------
T ss_pred HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEECchHhccCC-------
Confidence 57999999998643 22334456789999999 4566666666664 499999998764210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
...+...|+.||.+.+.+++.++.++ | ++++|+||.+.++-..... ......+....+ .
T Consensus 180 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~p------------~ 241 (279)
T 3ctm_A 180 ---IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFAS--KDMKAKWWQLTP------------L 241 (279)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCC--HHHHHHHHHHST------------T
T ss_pred ---CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccC--hHHHHHHHHhCC------------c
Confidence 12345789999999999999999874 7 9999999999987432111 122222221111 1
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..+++++|+|++++.++........|+++++.+|..
T Consensus 242 ~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 242 GREGLTQELVGGYLYLASNASTFTTGSDVVIDGGYT 277 (279)
T ss_dssp CSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred cCCcCHHHHHHHHHHHhCccccCccCCEEEECCCee
Confidence 237889999999999998754457789999988753
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=203.60 Aligned_cols=213 Identities=15% Similarity=0.157 Sum_probs=162.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|+||||||+++||+++++.|+++|++|++.+|+++ ..........++.++++|++|+++++++++.+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~-------~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g 74 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEK-------RSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQ 74 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-------HHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH-------HHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999999532 11111223467899999999999999988765
Q ss_pred CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|++|||||.... ..+.++++..+++|+.|+.++.+++. +.+ ++||++||...+. ..
T Consensus 75 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~--G~IInisS~~~~~------------~~ 140 (247)
T 3ged_A 75 RIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK--GRIINIASTRAFQ------------SE 140 (247)
T ss_dssp CCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGTS------------CC
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CcEEEEeeccccc------------CC
Confidence 79999999998643 22345677899999999988888774 333 4999999987642 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
+....|+.||.+...+++.++.++ ||+|++|.||.|-.+.... +.....+.-|. .-+..+
T Consensus 141 ~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~------~~~~~~~~~Pl------------~R~g~p 202 (247)
T 3ged_A 141 PDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQE------FTQEDCAAIPA------------GKVGTP 202 (247)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---------CCHHHHHTSTT------------SSCBCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHH------HHHHHHhcCCC------------CCCcCH
Confidence 345789999999999999999885 7999999999997763321 12222222221 115578
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+|+|.+++.++... ...|+++.|.+|-
T Consensus 203 ediA~~v~fL~s~~--~iTG~~i~VDGG~ 229 (247)
T 3ged_A 203 KDISNMVLFLCQQD--FITGETIIVDGGM 229 (247)
T ss_dssp HHHHHHHHHHHHCS--SCCSCEEEESTTG
T ss_pred HHHHHHHHHHHhCC--CCCCCeEEECcCH
Confidence 99999999999754 7889999998764
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=208.35 Aligned_cols=210 Identities=14% Similarity=0.060 Sum_probs=162.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-C
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-A 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~ 165 (421)
++++|++|||||+||||++++++|+++|++|++++|+.+ +|++|+++++++++.+ +
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----------------------~D~~~~~~v~~~~~~~g~ 59 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-----------------------LDISDEKSVYHYFETIGA 59 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-----------------------CCTTCHHHHHHHHHHHCS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-----------------------cCCCCHHHHHHHHHHhCC
Confidence 468899999999999999999999999999999998321 7999999999999876 6
Q ss_pred CcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTDQPA 239 (421)
Q Consensus 166 ~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~ 239 (421)
+|+||||||.... ..+.++++..+++|+.|+.++++++.+... .++||++||...+. +.++.
T Consensus 60 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------~~~~~ 127 (223)
T 3uce_A 60 FDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK------------VVANT 127 (223)
T ss_dssp EEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS------------CCTTC
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc------------CCCCc
Confidence 8999999998632 123445667899999999999999875421 23899999988753 22456
Q ss_pred ChHHHHHHHHHHHHHHHHHHhC-CcEEEEEeccccCCCCCCCC--hHHHHHHHHHcCCCeEEEecCCCCcceeecccHHH
Q 043169 240 SLYAATKKAGEEIAHTYNHIYG-LSITGLRFFTVYGPWGRPDM--AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDD 316 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~~g-i~~~~vrp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 316 (421)
..|+.||.+.+.+++.++.+++ +++++|+||.+.+|...... ....+...+....+ ...+.+++|
T Consensus 128 ~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~d 195 (223)
T 3uce_A 128 YVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLP------------VGKVGEASD 195 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHST------------TCSCBCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCC------------CCCccCHHH
Confidence 7899999999999999999875 99999999999987433211 11122222322222 224778999
Q ss_pred HHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 317 IVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 317 va~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
+|++++.+++.. ...|+++++.+|..+
T Consensus 196 vA~~~~~l~~~~--~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 196 IAMAYLFAIQNS--YMTGTVIDVDGGALL 222 (223)
T ss_dssp HHHHHHHHHHCT--TCCSCEEEESTTGGG
T ss_pred HHHHHHHHccCC--CCCCcEEEecCCeec
Confidence 999999999854 678999999987644
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-26 Score=208.96 Aligned_cols=225 Identities=15% Similarity=0.081 Sum_probs=163.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|++|||||+|+||++++++|+++|++|++++|+.+..+...+... ....++.++.+|++|.++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN---QAGGHAVAVKVDVSDRDQVFAAVEQARKTLG 78 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999999996432211111111 12356889999999999999988754
Q ss_pred CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+..++||++||...+. ..
T Consensus 79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~ 146 (256)
T 1geg_A 79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------GN 146 (256)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------CC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC------------CC
Confidence 689999999975431 12344567899999999888887743 33124999999987542 12
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHH-----------HHHHHHHcCCCeEEEecC
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYF-----------SFTRNILQGKPITVYRGK 302 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 302 (421)
+....|+.||.+.+.+++.++.+ +|+++++|+||.|.+|.... ... .....+....
T Consensus 147 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------- 216 (256)
T 1geg_A 147 PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAE--IDRQVSEAAGKPLGYGTAEFAKRI-------- 216 (256)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHH--HHHHHHHHHTCCTTHHHHHHHTTC--------
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhh--hhhhccccccCChHHHHHHHHhcC--------
Confidence 34578999999999999999877 48999999999999862110 000 0011111111
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
....+.+++|+|++++.++........|+++++.+|.
T Consensus 217 ----p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 253 (256)
T 1geg_A 217 ----TLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM 253 (256)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred ----CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 1224789999999999999766456789999998774
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=212.50 Aligned_cols=224 Identities=15% Similarity=0.100 Sum_probs=157.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+||||+++++.|+++|++|++++|+.+..+....... ....++.++.+|++|.++++++++.+
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 78 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIR---DAGGTALAQVLDVTDRHSVAAFAQAAVDT 78 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH---HTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996543222221111 12457889999999999999988765
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 79 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~IV~isS~~~~~------------ 145 (264)
T 3tfo_A 79 WGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRS-GQIINIGSIGALS------------ 145 (264)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTC------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-eEEEEEcCHHHcc------------
Confidence 789999999986432 2344566789999999988888763 3342 4999999987653
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
..+....|+.||.+.+.+++.++.+. ||++++|+||.|.++-... .......... ......+..
T Consensus 146 ~~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~----------~~~~~~~~~~-----~~~~~~~~~ 210 (264)
T 3tfo_A 146 VVPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGT----------ITHEETMAAM-----DTYRAIALQ 210 (264)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC--------------------------------------CCC
T ss_pred cCCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCccccc----------ccchhHHHHH-----HhhhccCCC
Confidence 22456789999999999999999885 8999999999998863221 0000000000 001112478
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
++|+|++++.++..+.....+++.....+
T Consensus 211 pedvA~~v~~l~s~~~~~~~~~i~i~p~~ 239 (264)
T 3tfo_A 211 PADIARAVRQVIEAPQSVDTTEITIRPTA 239 (264)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCccCccceEEEecCc
Confidence 99999999999998754344455444333
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=203.08 Aligned_cols=221 Identities=18% Similarity=0.155 Sum_probs=165.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|+++||||+|+||++++++|+++|++|++++|+.+. ...... ..++.++.+|++|.++++++++.+
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP----LREAAE----AVGAHPVVMDVADPASVERGFAEALAH 74 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH----TTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH----HcCCEEEEecCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999985321 111111 113889999999999999988764
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc----CCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA----NPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~----~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+. + .++||++||...++
T Consensus 75 ~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~------------ 141 (245)
T 1uls_A 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTASRVYLG------------ 141 (245)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEECCGGGGC------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEccchhcC------------
Confidence 689999999976431 123445678999999999998887543 3 24999999987443
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
.+....|+.||.+.+.+++.++.+ .|+++++|+||.|.++..... .......+....+ ...+
T Consensus 142 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~p------------~~~~ 206 (245)
T 1uls_A 142 -NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV--PEKVREKAIAATP------------LGRA 206 (245)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS--CHHHHHHHHHTCT------------TCSC
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhc--CHHHHHHHHhhCC------------CCCC
Confidence 134578999999999999999877 489999999999988743211 1122222222211 1126
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.+++|+|++++.++........|+.+.+.++..
T Consensus 207 ~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 207 GKPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (245)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCchhcCCcCCEEEECCCcc
Confidence 789999999999998664567799999987753
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=207.74 Aligned_cols=217 Identities=17% Similarity=0.127 Sum_probs=162.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+|+||||+|+||++++++|+++|++|++++|+.+..+ .+.++.+|++|+++++++++.+
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (253)
T 2nm0_A 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE--------------GFLAVKCDITDTEQVEQAYKEIEE 83 (253)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT--------------TSEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc--------------cceEEEecCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999654321 2788999999999999988764
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+ .+. ++||++||...+.
T Consensus 84 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~----------- 151 (253)
T 2nm0_A 84 THGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKK-GRVVLISSVVGLL----------- 151 (253)
T ss_dssp HTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECCCCCCC-----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEECchhhCC-----------
Confidence 68999999998643 124556788999999999999887643 343 4999999987542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..+....|+.||.+.+.+++.++.+. |+++++|+||.|.++.... ........+....+ ...
T Consensus 152 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~p------------~~~ 216 (253)
T 2nm0_A 152 -GSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV--LTDEQRANIVSQVP------------LGR 216 (253)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC-----------CHHHHHTTCT------------TCS
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh--cCHHHHHHHHhcCC------------CCC
Confidence 11235689999999999999998874 7999999999998763221 00011111211111 124
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+++++|+|++++.++........|+.+.+.++..
T Consensus 217 ~~~p~dvA~~i~~l~s~~~~~~tG~~i~vdGG~~ 250 (253)
T 2nm0_A 217 YARPEEIAATVRFLASDDASYITGAVIPVDGGLG 250 (253)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CcCHHHHHHHHHHHhCccccCCcCcEEEECCccc
Confidence 7899999999999998765567899999988753
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=212.79 Aligned_cols=229 Identities=14% Similarity=0.072 Sum_probs=168.2
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC-CCCChhHHHHHHHhhcCCceEEEEcccCC----HHHHHHH
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN-NYYDPSLKKARKALLNNHGVFVIEGDIND----AKLLAKL 160 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~~~~~ 160 (421)
.++++|++|||||+||||.+++++|+++|++|++++|+. +..+........ ....++.++.+|++| .++++++
T Consensus 19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~~~~~~~~~v~~~ 96 (288)
T 2x9g_A 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNK--ERSNTAVVCQADLTNSNVLPASCEEI 96 (288)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSCSTTHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHh--hcCCceEEEEeecCCccCCHHHHHHH
Confidence 347899999999999999999999999999999999965 322211111110 123578999999999 9999988
Q ss_pred hhcc-----CCcEEEEcccccCch--------------hhccCCchhhhhhHHHHHHHHHHHHhcCC---------CCeE
Q 043169 161 FDAV-----AFTHVMHLAAQAGVR--------------YAMQNPHSYVHSNIAGLVTLLEACKSANP---------QPSI 212 (421)
Q Consensus 161 ~~~~-----~~d~vi~~Ag~~~~~--------------~~~~~~~~~~~~N~~g~~~l~~~~~~~~~---------~~ri 212 (421)
++.+ ++|+||||||+.... ...++++..+++|+.|+.++++++.+... .++|
T Consensus 97 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~i 176 (288)
T 2x9g_A 97 INSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSI 176 (288)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEE
Confidence 8754 689999999985421 22334557899999999999988754321 2499
Q ss_pred EEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHH
Q 043169 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRN 289 (421)
Q Consensus 213 V~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~ 289 (421)
|++||...+. +.++...|+.||.+.+.+++.++.++ ||++++|+||.|++|. . . . ......
T Consensus 177 v~isS~~~~~------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~-~-~~~~~~ 240 (288)
T 2x9g_A 177 VNLCDAMVDQ------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-M-G-EEEKDK 240 (288)
T ss_dssp EEECCTTTTS------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-S-C-HHHHHH
T ss_pred EEEecccccC------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-c-C-hHHHHH
Confidence 9999987753 22456789999999999999998874 8999999999999985 2 1 1 122222
Q ss_pred HHcCCCeEEEecCCCCcceeec-ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 290 ILQGKPITVYRGKNHVDLARDF-TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~-i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+....+. .-+ ..++|+|++++.++........|+.+++.+|..
T Consensus 241 ~~~~~p~------------~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 284 (288)
T 2x9g_A 241 WRRKVPL------------GRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGLS 284 (288)
T ss_dssp HHHTCTT------------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHhhCCC------------CCCCCCHHHHHHHHHHHhCccccCccCCEEEECcchh
Confidence 3222211 124 689999999999998765567899999987743
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-26 Score=210.50 Aligned_cols=211 Identities=16% Similarity=0.160 Sum_probs=149.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+.+|++|||||+||||++++++|+++|++|++++|+.+.. ...... ...++.++.+|++|.++++++++.+
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 98 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDAL----QETAAE--IGDDALCVPTDVTDPDSVRALFTATVE 98 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHH--HTSCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHH--hCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999954321 111111 1367899999999999999999865
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHh----cCC-CCeEEEEccccccCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANP-QPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~-~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+ .+. .++||++||...+.
T Consensus 99 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~--------- 169 (272)
T 4dyv_A 99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS--------- 169 (272)
T ss_dssp HHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS---------
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC---------
Confidence 78999999998543 123445568999999998888887643 221 24999999987652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.++...|+.||.+.+.+++.++.+ +||++++|+||.|.++-... +..+..... .....
T Consensus 170 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----------~~~~~~~~~-----~~~~~ 231 (272)
T 4dyv_A 170 ---PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQK----------MKAGVPQAD-----LSIKV 231 (272)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC-----------------------------------
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhh----------hcccchhhh-----hcccc
Confidence 2245678999999999999999887 48999999999999873221 101000000 01122
Q ss_pred eecccHHHHHHHHHHhhhcCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
..+.+++|+|++++.++..+..
T Consensus 232 ~~~~~pedvA~~v~fL~s~~~~ 253 (272)
T 4dyv_A 232 EPVMDVAHVASAVVYMASLPLD 253 (272)
T ss_dssp ----CHHHHHHHHHHHHHSCTT
T ss_pred cCCCCHHHHHHHHHHHhCCCCc
Confidence 3478999999999999998744
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=209.41 Aligned_cols=217 Identities=14% Similarity=0.046 Sum_probs=157.1
Q ss_pred cccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 84 QIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 84 ~~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
.+..+++|+||||||+|+||.+++++|+++|++|++++|+.+..+....... ....++.++.+|++|.+++.++++.
T Consensus 23 ~m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~v~~~~~~ 99 (262)
T 3rkr_A 23 HMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIV---AAGGEAESHACDLSHSDAIAAFATG 99 (262)
T ss_dssp --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred hhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---HhCCceeEEEecCCCHHHHHHHHHH
Confidence 3455789999999999999999999999999999999996532222211111 1245789999999999999999887
Q ss_pred c-----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCC
Q 043169 164 V-----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPF 229 (421)
Q Consensus 164 ~-----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~ 229 (421)
+ ++|+||||||.... ..+.++++..+++|+.|+.++++++.. .+ .++||++||...+.
T Consensus 100 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~------- 171 (262)
T 3rkr_A 100 VLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAK-RGHIINISSLAGKN------- 171 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCEEEEECSSCSSC-------
T ss_pred HHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CceEEEEechhhcC-------
Confidence 5 68999999998321 123445667899999999999988743 34 34999999987652
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 230 SEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 230 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
+..+...|+.||.+.+.+++.++.+ .|+++++|+||.|.++-... ... ..
T Consensus 172 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----------~~~------------~~ 224 (262)
T 3rkr_A 172 -----PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVG----------LSA------------KK 224 (262)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccc----------ccc------------cc
Confidence 2245678999999999999999877 58999999999998762211 000 01
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEE
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFN 338 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~ 338 (421)
....++.++|+|++++.++........++++.
T Consensus 225 ~~~~~~~p~dvA~~v~~l~s~~~~~~~g~~~i 256 (262)
T 3rkr_A 225 SALGAIEPDDIADVVALLATQADQSFISEVLV 256 (262)
T ss_dssp ----CCCHHHHHHHHHHHHTCCTTCCEEEEEE
T ss_pred ccccCCCHHHHHHHHHHHhcCccccccCcEEe
Confidence 12346789999999999998764444455543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=209.75 Aligned_cols=227 Identities=11% Similarity=0.059 Sum_probs=165.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+|+||||+|+||++++++|+++|++|++++|+.+.. ...........++.++.+|++|.++++++++.+
T Consensus 26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (276)
T 2b4q_A 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEAC----ADTATRLSAYGDCQAIPADLSSEAGARRLAQALGE 101 (276)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHH----HHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999854321 111111111237889999999999999988764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCC---CCeEEEEccccccCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANP---QPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~---~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||..... ...++++..+++|+.|+.++++++. +.+. .++||++||...+..
T Consensus 102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~------- 174 (276)
T 2b4q_A 102 LSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA------- 174 (276)
T ss_dssp HCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC-------
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC-------
Confidence 689999999976432 2233456789999999988888764 3332 149999999887631
Q ss_pred CCCCCCCCCC-hHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHc--CCCeEEEecCCC
Q 043169 231 EADRTDQPAS-LYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ--GKPITVYRGKNH 304 (421)
Q Consensus 231 e~~~~~~~~~-~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 304 (421)
.+... .|+.||.+.+.+++.++.+ +||++++|+||.+.++.... ........+.. ..+
T Consensus 175 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~p--------- 238 (276)
T 2b4q_A 175 -----MGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRH--IANDPQALEADSASIP--------- 238 (276)
T ss_dssp -----CCCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHH--HHHCHHHHHHHHHTST---------
T ss_pred -----CCCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhh--cchhHHHHHHhhcCCC---------
Confidence 12334 8999999999999999877 48999999999999873211 00001111111 111
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+.+++|+|++++.++........|+++++.+|.
T Consensus 239 ---~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 239 ---MGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGGF 274 (276)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred ---CCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 123788999999999999876556779999998764
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=210.08 Aligned_cols=209 Identities=16% Similarity=0.096 Sum_probs=156.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+.+|+||||||+||||++++++|+++|++|++++|+.+ ..+.....++.++.+|++|.++++++++.+
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~---------~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVE---------RLKALNLPNTLCAQVDVTDKYTFDTAITRAEKI 84 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH---------HHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH---------HHHHhhcCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999431 222334457899999999999999988865
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||..... ...++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~IV~isS~~~~~------------ 151 (266)
T 3p19_A 85 YGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNC-GTIINISSIAGKK------------ 151 (266)
T ss_dssp HCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTS------------
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEcChhhCC------------
Confidence 689999999986432 223445678999999999977776 34443 4999999988753
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
..++...|+.||.+.+.+++.++.+ +||++++|+||.|.++....... ........... .....+
T Consensus 152 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~-----------~~~~r~ 219 (266)
T 3p19_A 152 TFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTS-QQIKDGYDAWR-----------VDMGGV 219 (266)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSC-HHHHHHHHHHH-----------HHTTCC
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccc-hhhhHHHHhhc-----------ccccCC
Confidence 2245678999999999999999987 48999999999999874321110 01111111000 011237
Q ss_pred ccHHHHHHHHHHhhhcCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~ 330 (421)
++++|+|++++.++..+..
T Consensus 220 ~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 220 LAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp BCHHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 8899999999999998743
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-26 Score=211.17 Aligned_cols=231 Identities=12% Similarity=0.056 Sum_probs=168.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++|++|||||+||||.+++++|+++|++|++++|+.+.. .+..... .....++.++.+|++|.+++.++++.+
T Consensus 26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 102 (283)
T 1g0o_A 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTES---AEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV 102 (283)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH---HHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999864311 1111111 112357889999999999999888764
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+.- ..++||++||...+.. .
T Consensus 103 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------~ 171 (283)
T 1g0o_A 103 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK-----------A 171 (283)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS-----------S
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccC-----------C
Confidence 689999999986431 2344567889999999999999997751 1249999999876421 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC-------C--ChHHHHHHHHHc--CCCeEEEec
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP-------D--MAYFSFTRNILQ--GKPITVYRG 301 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~-------~--~~~~~~~~~~~~--~~~~~~~~~ 301 (421)
..+...|+.||.+.+.+++.++.+ +||++++|+||.|.++.... . .........+.. ..+
T Consensus 172 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------ 245 (283)
T 1g0o_A 172 VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSP------ 245 (283)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCT------
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCCC------
Confidence 123678999999999999999877 48999999999998862100 0 000111111111 111
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+.+++|+|++++.++........|+++++.+|.
T Consensus 246 ------~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 246 ------LRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 281 (283)
T ss_dssp ------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred ------CCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCCc
Confidence 123778999999999999876556789999998764
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=216.29 Aligned_cols=228 Identities=15% Similarity=0.060 Sum_probs=153.4
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|+||||||+||||.+++++|+++|++|++++|+.+..+........ .....++.++.+|++|.+++.++++.+
T Consensus 4 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEA-EGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-HTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999965433332222221 112237899999999999999998865
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC---------CCCeEEEEccccccCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN---------PQPSIVWASSSSVYGLNENV 227 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~---------~~~riV~~SS~~v~g~~~~~ 227 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++.... ..++||++||...+.
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~----- 157 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL----- 157 (319)
T ss_dssp HHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC-----
T ss_pred HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc-----
Confidence 789999999985432 2334566789999999999998874321 134899999988763
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 228 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
..+....|+.||.+.+.+++.++.+ .|+++++|+||.|.++-..........+............. .-
T Consensus 158 -------~~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 228 (319)
T 3ioy_A 158 -------AAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVE--RL 228 (319)
T ss_dssp -------CCSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-------------------------------
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhcccccchhHHHHH--HH
Confidence 2234578999999988888888766 48999999999999874332111111111111000000000 00
Q ss_pred CcceeecccHHHHHHHHHHhhhcC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
.......++++|+|++++.+++.+
T Consensus 229 ~~~~~~~~~pe~vA~~~~~al~~~ 252 (319)
T 3ioy_A 229 AGVHEFGMEPDVIGARVIEAMKAN 252 (319)
T ss_dssp CCGGGSSBCHHHHHHHHHHHHHTT
T ss_pred HHhhhcCCCHHHHHHHHHHHHHcC
Confidence 011112279999999999999876
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=204.00 Aligned_cols=219 Identities=15% Similarity=0.078 Sum_probs=162.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
++|++|||||+|+||++++++|+++|++|++++|+.+..+........ ....++.++.+|++|.++++++++.+
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ--EQGVEVFYHHLDVSKAESVEEFSKKVLERF 78 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--hcCCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999965433322222211 22467999999999999999999865
Q ss_pred -CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHhc---CCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKSA---NPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~---~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||+..... +.++++..+++|+.|+.++++++.+. +. +++|++||...+. ..
T Consensus 79 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~ii~~sS~~~~~------------~~ 145 (235)
T 3l77_A 79 GDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTG-GLALVTTSDVSAR------------LI 145 (235)
T ss_dssp SSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSS------------CC
T ss_pred CCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcEEEEecchhcc------------cC
Confidence 7899999999864322 34456688999999999999988532 21 2788888765432 12
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH-hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI-YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~-~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
+....|+.||.+.+.+++.+..+ .|+++++|+||.|.++...... .......++.++
T Consensus 146 ~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~----------------------~~~~~~~~~~p~ 203 (235)
T 3l77_A 146 PYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKP----------------------GKPKEKGYLKPD 203 (235)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCS----------------------CCCGGGTCBCHH
T ss_pred CCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccC----------------------CcccccCCCCHH
Confidence 34578999999999999998655 4899999999999876322100 001112478899
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
|+|++++.++..+.....+++.....+..
T Consensus 204 dva~~v~~l~~~~~~~~~~~~~~~~~~~~ 232 (235)
T 3l77_A 204 EIAEAVRCLLKLPKDVRVEELMLRSVYQR 232 (235)
T ss_dssp HHHHHHHHHHTSCTTCCCCEEEECCTTSC
T ss_pred HHHHHHHHHHcCCCCCccceEEEeecccC
Confidence 99999999999886656677766655543
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=209.63 Aligned_cols=224 Identities=14% Similarity=0.056 Sum_probs=162.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGL-DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
+|+|+||||+|+||++++++|+++|++|+++ +|+.+..+...+... ....++.++.+|++|.++++++++.+
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIE---AYGGQAITFGGDVSKEADVEAMMKTAIDAW 77 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH---HHTCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH---hcCCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 5799999999999999999999999999995 664321111111111 12357889999999999999998764
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++++..+++|+.|+.++++++.+ .+. ++||++||...+. .
T Consensus 78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~------------~ 144 (244)
T 1edo_A 78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASVVGLI------------G 144 (244)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHH------------C
T ss_pred CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-CEEEEECChhhcC------------C
Confidence 689999999986431 23344567899999999999988854 343 4999999986542 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.++...|+.||.+.+.+++.++.+ .|+++++++||.++++..... ...+...+....+ ...++
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~~~~~ 210 (244)
T 1edo_A 145 NIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL--GEDMEKKILGTIP------------LGRTG 210 (244)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT--CHHHHHHHHTSCT------------TCSCB
T ss_pred CCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc--ChHHHHHHhhcCC------------CCCCC
Confidence 234678999999999999999877 489999999999998732211 1122222222221 12478
Q ss_pred cHHHHHHHHHHhhhcC-CCCCCceEEEecCCC
Q 043169 313 YIDDIVKGCLGSLDTS-AGPAPYRIFNLGNTS 343 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~-~~~~~~~~~~i~~~~ 343 (421)
+++|+|++++.++..+ .....|+.|++.++.
T Consensus 211 ~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 211 QPENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp CHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhCCCccCCcCCCEEEeCCCc
Confidence 9999999999998433 224568999998764
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=208.83 Aligned_cols=220 Identities=15% Similarity=0.104 Sum_probs=162.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH-HHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA-KLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~~ 164 (421)
++++|+|+||||+||||.+++++|+++|++ |++++|+.+. ...+... ......++.++.+|++|. ++++++++.+
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELK-AINPKVNITFHTYDVTVPVAESKKLLKKI 78 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHH-HHCTTSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHH-HhCCCceEEEEEEecCCChHHHHHHHHHH
Confidence 367899999999999999999999999997 9999986531 1222221 111235788999999998 8888888754
Q ss_pred -----CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC------CCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP------QPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~------~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||... .++++..+++|+.|+.++++++.+... .++||++||...+.
T Consensus 79 ~~~~g~id~lv~~Ag~~~----~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 143 (254)
T 1sby_A 79 FDQLKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN----------- 143 (254)
T ss_dssp HHHHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-----------
T ss_pred HHhcCCCCEEEECCccCC----HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc-----------
Confidence 6899999999753 356788999999999999998854211 23899999988763
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-hH--HHHHHHHHcCCCeEEEecCCCCcc
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM-AY--FSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.++...|+.||.+.+.+++.++.+ +|+++++|+||.|.++...... .. ..........
T Consensus 144 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-------------- 208 (254)
T 1sby_A 144 -AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS-------------- 208 (254)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT--------------
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHhc--------------
Confidence 2234678999999999999998876 6899999999999987211000 00 0000111111
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..+.+++|+|++++.+++.. ..|++|++.++.
T Consensus 209 -~~~~~~~dvA~~i~~~~~~~---~~G~~~~v~gG~ 240 (254)
T 1sby_A 209 -HPTQTSEQCGQNFVKAIEAN---KNGAIWKLDLGT 240 (254)
T ss_dssp -SCCEEHHHHHHHHHHHHHHC---CTTCEEEEETTE
T ss_pred -CCCCCHHHHHHHHHHHHHcC---CCCCEEEEeCCc
Confidence 12347999999999988743 568999998873
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-26 Score=206.56 Aligned_cols=219 Identities=13% Similarity=0.128 Sum_probs=166.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKK-RGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.++|++|||||+||||++++++|++ .|++|++++|+.+. ....+.++.+|++|.++++++++..
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~-------------~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 68 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF-------------SAENLKFIKADLTKQQDITNVLDIIKN 68 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC-------------CCTTEEEEECCTTCHHHHHHHHHHTTT
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc-------------ccccceEEecCcCCHHHHHHHHHHHHh
Confidence 4678999999999999999999999 78999999986541 1245789999999999999988654
Q ss_pred -CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
++|+||||||+... ..+.++++..+++|+.|+.++++++.+... .++||++||...+. +.++
T Consensus 69 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------~~~~ 136 (244)
T 4e4y_A 69 VSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI------------AKPN 136 (244)
T ss_dssp CCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC------------CCTT
T ss_pred CCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc------------CCCC
Confidence 68999999998643 223445667899999999999999876432 13899999988753 2245
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC---------hHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 239 ASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM---------AYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
...|+.||.+.+.+++.++.+ +|+++++|+||.|.+|...... .............
T Consensus 137 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 204 (244)
T 4e4y_A 137 SFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEF------------ 204 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTS------------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcC------------
Confidence 578999999999999999986 5899999999999886211000 0000111122221
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
....+.+++|+|++++.++........|+++++.+|.
T Consensus 205 p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 241 (244)
T 4e4y_A 205 PLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGGY 241 (244)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHhcCccccccCCeEeECCCc
Confidence 2234788999999999999876556789999998774
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=208.11 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=165.6
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChh---HHHHH-HHhhcCCceEEEEcccCCHHHHHHHh
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPS---LKKAR-KALLNNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~-~~~~~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
+++++|++|||||+|+||.+++++|+++|++|++++|+.+..+.. ..... .......++.++++|++|.+++++++
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 84 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAV 84 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 347899999999999999999999999999999999988754432 11111 11122467999999999999999998
Q ss_pred hcc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccccCCCCCCCC
Q 043169 162 DAV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSVYGLNENVPF 229 (421)
Q Consensus 162 ~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v~g~~~~~~~ 229 (421)
+.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++.+.- ..++||++||...+..
T Consensus 85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------ 158 (285)
T 3sc4_A 85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP------ 158 (285)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC------
Confidence 866 789999999986432 2334456789999999999999886542 1349999999775421
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEecc-ccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 230 SEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFT-VYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 230 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~-v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
...+...|+.||.+.+.+++.++.+ +||++++|+||. +-.+ +.........
T Consensus 159 -----~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~----------~~~~~~~~~~---------- 213 (285)
T 3sc4_A 159 -----KWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA----------AVQNLLGGDE---------- 213 (285)
T ss_dssp -----GGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCH----------HHHHHHTSCC----------
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccH----------HHHhhccccc----------
Confidence 1134578999999999999999987 589999999995 4332 2223332221
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN 341 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~ 341 (421)
....+..++|+|++++.++.... ...|+.+.+.+
T Consensus 214 -~~~r~~~pedvA~~~~~l~s~~~-~~tG~~i~~dg 247 (285)
T 3sc4_A 214 -AMARSRKPEVYADAAYVVLNKPS-SYTGNTLLCED 247 (285)
T ss_dssp -CCTTCBCTHHHHHHHHHHHTSCT-TCCSCEEEHHH
T ss_pred -cccCCCCHHHHHHHHHHHhCCcc-cccceEEEEcC
Confidence 11236678999999999998775 56667665543
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-26 Score=207.50 Aligned_cols=217 Identities=15% Similarity=0.061 Sum_probs=161.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||++++++|+++|++|++++|+.+..+. +..+.+|++|.++++++++.+
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~--------------~~~~~~D~~~~~~~~~~~~~~~~ 77 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG--------------LFGVEVDVTDSDAVDRAFTAVEE 77 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT--------------SEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH--------------hcCeeccCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999997654322 123889999999999988764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+. ++||++||...+.
T Consensus 78 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~----------- 145 (247)
T 1uzm_A 78 HQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKF-GRMIFIGSVSGLW----------- 145 (247)
T ss_dssp HHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCCCC-------------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CEEEEECCHhhcc-----------
Confidence 689999999986431 23345678899999999999988753 343 4999999986542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..++...|+.||.+.+.+++.++.+ +|+++++|+||.+.++..... .......+.... ....
T Consensus 146 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~------------p~~~ 210 (247)
T 1uzm_A 146 -GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL--DERIQQGALQFI------------PAKR 210 (247)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS--CHHHHHHHGGGC------------TTCS
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhc--CHHHHHHHHhcC------------CCCC
Confidence 1234678999999999999999887 489999999999987621100 011111111111 1124
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+.+++|+|++++.++........|+++++.++..
T Consensus 211 ~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 211 VGTPAEVAGVVSFLASEDASYISGAVIPVDGGMG 244 (247)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CcCHHHHHHHHHHHcCccccCCcCCEEEECCCcc
Confidence 7899999999999997654557799999988753
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=207.63 Aligned_cols=233 Identities=16% Similarity=0.088 Sum_probs=165.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||++++++|+++|++|++++|+.+. ...... . ..++.++.+|++|.++++++++.+
T Consensus 6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~-~--~~~~~~~~~Dv~d~~~v~~~~~~~~~ 78 (270)
T 1yde_A 6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESG----GRALEQ-E--LPGAVFILCDVTQEDDVKTLVSETIR 78 (270)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH-H--CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH-H--hcCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999985321 111111 1 135889999999999999988765
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhc---CCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSA---NPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~---~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+. + .++||++||...+.
T Consensus 79 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~----------- 146 (270)
T 1yde_A 79 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAI----------- 146 (270)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCHHHHH-----------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-CCEEEEEcCccccC-----------
Confidence 78999999998542 1123345678999999999999988531 2 24999999975431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC----CChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP----DMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
..+....|+.||.+.+.+++.++.+ +|+++++|+||.|++|.... .......+.......+
T Consensus 147 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p----------- 214 (270)
T 1yde_A 147 -GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQP----------- 214 (270)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTST-----------
T ss_pred -CCCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcCC-----------
Confidence 1134578999999999999999877 58999999999999872110 0000000111111111
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHH
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVN 352 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~ 352 (421)
...+..++|+|++++.++.. .....|+.+++.+|..+...+...
T Consensus 215 -~~r~~~p~dva~~v~~L~s~-~~~itG~~i~vdGG~~~~~~~~~~ 258 (270)
T 1yde_A 215 -LGRMGQPAEVGAAAVFLASE-ANFCTGIELLVTGGAELGYGCKAS 258 (270)
T ss_dssp -TSSCBCHHHHHHHHHHHHHH-CTTCCSCEEEESTTTTSCC-----
T ss_pred -CCCCcCHHHHHHHHHHHccc-CCCcCCCEEEECCCeecccCcCcc
Confidence 12367899999999998876 356789999999887665544433
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-25 Score=209.09 Aligned_cols=177 Identities=19% Similarity=0.136 Sum_probs=135.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhH-HHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSL-KKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++|+||||||+||||.+++++|+++|++|++.+|+........ +..... .....++.++.+|++|.+++.++++.+
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999754333322 222111 123467999999999999999999865
Q ss_pred ----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||+... ..+.++.+..+++|+.|+.++++++ ++.+. ++||++||...+..
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~-g~iV~isS~~~~~~--------- 152 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKH-GLLIWISSSSSAGG--------- 152 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSC---------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEecchhccC---------
Confidence 78999999997532 1233455678999999999999988 55553 49999999876531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPW 276 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~ 276 (421)
..+....|+.||.+.+.+++.++.+ +||++++|+||.|.++.
T Consensus 153 --~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 153 --TPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 1133567999999999999999887 58999999999998653
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=204.62 Aligned_cols=191 Identities=13% Similarity=0.128 Sum_probs=151.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-CCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-AFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d~v 169 (421)
|+|+||||+|+||++++++|+ +|++|++++|+.+ ++.+|++|++++++++++. ++|+|
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~~d~v 62 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG--------------------DVTVDITNIDSIKKMYEQVGKVDAI 62 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS--------------------SEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc--------------------ceeeecCCHHHHHHHHHHhCCCCEE
Confidence 489999999999999999999 9999999998532 4789999999999999875 57999
Q ss_pred EEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHH
Q 043169 170 MHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAA 244 (421)
Q Consensus 170 i~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~ 244 (421)
|||||...... ..+++...+++|+.++.++++++.+... .++||++||...+. +.++...|+.
T Consensus 63 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~------------~~~~~~~Y~~ 130 (202)
T 3d7l_A 63 VSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED------------PIVQGASAAM 130 (202)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS------------CCTTCHHHHH
T ss_pred EECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC------------CCCccHHHHH
Confidence 99999754321 2233457789999999999999977610 13999999987653 2245678999
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHH
Q 043169 245 TKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL 322 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 322 (421)
+|.+.|.+++.++.+. |+++++++||.++++.. . .. +....+++++++|+|++++
T Consensus 131 sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~-------~----~~------------~~~~~~~~~~~~dva~~~~ 187 (202)
T 3d7l_A 131 ANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD-------K----LE------------PFFEGFLPVPAAKVARAFE 187 (202)
T ss_dssp HHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH-------H----HG------------GGSTTCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh-------h----hh------------hhccccCCCCHHHHHHHHH
Confidence 9999999999998764 89999999999999721 0 00 1122457899999999999
Q ss_pred HhhhcCCCCCCceEEEec
Q 043169 323 GSLDTSAGPAPYRIFNLG 340 (421)
Q Consensus 323 ~~l~~~~~~~~~~~~~i~ 340 (421)
.++.. ...|++|++.
T Consensus 188 ~~~~~---~~~G~~~~vd 202 (202)
T 3d7l_A 188 KSVFG---AQTGESYQVY 202 (202)
T ss_dssp HHHHS---CCCSCEEEEC
T ss_pred Hhhhc---cccCceEecC
Confidence 88843 3567888873
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=207.31 Aligned_cols=223 Identities=16% Similarity=0.084 Sum_probs=164.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+|++|||||+||||++++++|+++| +.|++.+|+.+. .+..... ...++.++.+|++|.++++++++.+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~----~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAP----LKKLKEK--YGDRFFYVVGDITEDSVLKQLVNAAVKG 75 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHH----HHHHHHH--HGGGEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHH----HHHHHHH--hCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999985 788888885431 1112211 1357899999999999999998875
Q ss_pred --CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+ ++||++||...+.
T Consensus 76 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~~----------- 142 (254)
T 3kzv_A 76 HGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACNM----------- 142 (254)
T ss_dssp HSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCCC-----------
T ss_pred cCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhcc-----------
Confidence 78999999998543 1233456678999999999999988 4444 4999999987653
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCCCC-------hHHHHHHHHHcCCCeEEEecCCCC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRFFTVYGPWGRPDM-------AYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~~vrp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.++...|+.||.+.+.+++.++.+. |+++++|+||.|.++-..... ........+....+
T Consensus 143 -~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 211 (254)
T 3kzv_A 143 -YFSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKE---------- 211 (254)
T ss_dssp -SSCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHT----------
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHh----------
Confidence 22456789999999999999999885 899999999999987432110 01122222222111
Q ss_pred cceeecccHHHHHHHHHHhhhcC-CCCCCceEEEecCCCc
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTS-AGPAPYRIFNLGNTSP 344 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~i~~~~~ 344 (421)
...+.+++|+|++++.++... .....|+.+++.+++.
T Consensus 212 --~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~~ 249 (254)
T 3kzv_A 212 --NNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPAL 249 (254)
T ss_dssp --TC----CHHHHHHHHHHHHHCCCGGGTTCEEETTCGGG
T ss_pred --cCCcCCcccHHHHHHHHHhhcccCCCCccEEEecCccc
Confidence 123667899999999999876 2567899999887653
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-26 Score=206.46 Aligned_cols=215 Identities=15% Similarity=0.119 Sum_probs=162.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHh
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD-------GVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
+|+|+||||+|+||++++++|+++|+ +|++++|+.+.. ....... ....++.++.+|++|.+++++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADL----EKISLECRAEGALTDTITADISDMADVRRLT 77 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHH----HHHHHHHHTTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHH----HHHHHHHHccCCeeeEEEecCCCHHHHHHHH
Confidence 67899999999999999999999999 999999854211 1111111 12357899999999999999988
Q ss_pred hcc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCC
Q 043169 162 DAV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 162 ~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~ 228 (421)
+.+ ++|+||||||..... .+.++++..+++|+.|+.++++++.+ .+. ++||++||...+.
T Consensus 78 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~------ 150 (244)
T 2bd0_A 78 THIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS-GHIFFITSVAATK------ 150 (244)
T ss_dssp HHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS------
T ss_pred HHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CEEEEEecchhcC------
Confidence 754 689999999986431 23345667899999999999988743 343 4999999988763
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.++...|+.||.+.+.+++.++.+ +|+++++++||.|++|...... . ..
T Consensus 151 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~------------~---------~~ 203 (244)
T 2bd0_A 151 ------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD------------D---------EM 203 (244)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC------------S---------TT
T ss_pred ------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcc------------c---------cc
Confidence 2245678999999999999988875 4899999999999998432110 0 00
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
...+++++|+|++++.++..+.....++++...+++.
T Consensus 204 --~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~~~~ 240 (244)
T 2bd0_A 204 --QALMMMPEDIAAPVVQAYLQPSRTVVEEIILRPTSGD 240 (244)
T ss_dssp --GGGSBCHHHHHHHHHHHHTSCTTEEEEEEEEEETTCC
T ss_pred --cccCCCHHHHHHHHHHHHhCCccccchheEEeccccc
Confidence 1258899999999999998765445566666655443
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=213.97 Aligned_cols=227 Identities=15% Similarity=0.119 Sum_probs=168.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC---cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD---GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+++|++|||||+||||.+++++|+++|+ +|++++|+.+..+...+.... .....++.++.+|++|.++++++++.+
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 109 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQ-EFPNAKVHVAQLDITQAEKIKPFIENL 109 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-HCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHh-hCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 6899999999999999999999999998 999999965433222222111 112467899999999999999999876
Q ss_pred -----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~IV~isS~~~~~-------- 180 (287)
T 3rku_A 110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNS-GDIVNLGSIAGRD-------- 180 (287)
T ss_dssp CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTS--------
T ss_pred HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEECChhhcC--------
Confidence 68999999997642 1234456789999999999999987 34443 4999999987652
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCC--CCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGR--PDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
..+....|+.||.+.+.+++.++.+ +||++++|+||.|.++... ..... ..........
T Consensus 181 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~-~~~~~~~~~~----------- 244 (287)
T 3rku_A 181 ----AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNE-EQAKNVYKDT----------- 244 (287)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCH-HHHHHHHTTS-----------
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcH-HHHHHhhccc-----------
Confidence 2245678999999999999999988 4899999999999887210 00000 1111111111
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..+.++|+|++++.++..+.....|+++.+.++++
T Consensus 245 ----~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 245 ----TPLMADDVADLIVYATSRKQNTVIADTLIFPTNQA 279 (287)
T ss_dssp ----CCEEHHHHHHHHHHHHTSCTTEEEEEEEEEETTEE
T ss_pred ----CCCCHHHHHHHHHHHhCCCCCeEecceEEeeCCCC
Confidence 12378999999999998875556788998887764
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=204.64 Aligned_cols=220 Identities=12% Similarity=0.044 Sum_probs=163.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++++.|+++|++|++.+|+.... .....++++|++|.++++++++.+
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG-------------LPEELFVEADLTTKEGCAIVAEATRQ 74 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT-------------SCTTTEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC-------------CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999965321 123457899999999998888764
Q ss_pred ---CCcEEEEcccccCc------hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV------RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||.... ..+.++++..+++|+.|+.++.+++. +.+ .++||++||...+-
T Consensus 75 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Iv~isS~~~~~--------- 144 (261)
T 4h15_A 75 RLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARG-SGVVVHVTSIQRVL--------- 144 (261)
T ss_dssp HTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS---------
T ss_pred HcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcC-CceEEEEEehhhcc---------
Confidence 68999999997532 22345667899999999888887763 344 34999999976531
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC-----------C-ChHHHHHHHHHcCCCe
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP-----------D-MAYFSFTRNILQGKPI 296 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~-----------~-~~~~~~~~~~~~~~~~ 296 (421)
........|+.||.+.+.+++.++.+ +||+|++|.||.|..|.... + .....+........|.
T Consensus 145 --~~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 222 (261)
T 4h15_A 145 --PLPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPL 222 (261)
T ss_dssp --CCTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTT
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCC
Confidence 11123567999999999999999988 48999999999998752100 0 0011122222222221
Q ss_pred EEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 297 TVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|.+++.++........|+++.+.+|-
T Consensus 223 ------------gR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG~ 257 (261)
T 4h15_A 223 ------------GRPAKPEEVANLIAFLASDRAASITGAEYTIDGGT 257 (261)
T ss_dssp ------------SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred ------------CCCcCHHHHHHHHHHHhCchhcCccCcEEEECCcC
Confidence 12567899999999999876667889999998764
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=206.15 Aligned_cols=229 Identities=14% Similarity=0.084 Sum_probs=168.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHH-HhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARK-ALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++|+|+||||+|+||.+++++|+++|++|++++++.. +...+... .......+.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK---EEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDN 81 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCS---HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHH
Confidence 68899999999999999999999999999998754332 11111111 1123467889999999999998888764
Q ss_pred ---------CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCC
Q 043169 165 ---------AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ---------~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||+..... ..++++..+++|+.|+.++++++.+.- ..++||++||...+.
T Consensus 82 ~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~-------- 153 (255)
T 3icc_A 82 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI-------- 153 (255)
T ss_dssp HHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS--------
T ss_pred HhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc--------
Confidence 2799999999864321 233456789999999999999987541 123899999987653
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+....|+.||.+.+.+++.++.++ |+++++++||.+.++-......-..+........+
T Consensus 154 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------ 217 (255)
T 3icc_A 154 ----SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISA------------ 217 (255)
T ss_dssp ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTST------------
T ss_pred ----CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccCC------------
Confidence 22446789999999999999999874 89999999999998754321111112222222221
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
...+.+++|+|++++.++........|+++++.+|.
T Consensus 218 ~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~ 253 (255)
T 3icc_A 218 FNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGS 253 (255)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSST
T ss_pred cCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCCe
Confidence 224678999999999998766556789999998874
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=214.61 Aligned_cols=229 Identities=12% Similarity=0.004 Sum_probs=168.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEe-CCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH----------
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLD-NFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK---------- 155 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---------- 155 (421)
.+++|+||||||+|+||.++++.|+++|++|++++ |+.+..+........ ....++.++.+|++|.+
T Consensus 43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 120 (328)
T 2qhx_A 43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNA--RRPNSAITVQADLSNVATAPVSGADGS 120 (328)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSSSCBCC-------
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--hcCCeEEEEEeeCCCchhccccccccc
Confidence 36889999999999999999999999999999999 754322111111110 12357899999999998
Q ss_pred -------HHHHHhhcc-----CCcEEEEcccccCch----hh--------------ccCCchhhhhhHHHHHHHHHHHHh
Q 043169 156 -------LLAKLFDAV-----AFTHVMHLAAQAGVR----YA--------------MQNPHSYVHSNIAGLVTLLEACKS 205 (421)
Q Consensus 156 -------~~~~~~~~~-----~~d~vi~~Ag~~~~~----~~--------------~~~~~~~~~~N~~g~~~l~~~~~~ 205 (421)
+++++++.+ ++|+||||||+.... .. .++++..+++|+.|+.++++++.+
T Consensus 121 ~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 200 (328)
T 2qhx_A 121 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH 200 (328)
T ss_dssp CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888765 789999999986431 12 344567899999999999988753
Q ss_pred ----cCC-----CCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecccc
Q 043169 206 ----ANP-----QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVY 273 (421)
Q Consensus 206 ----~~~-----~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~ 273 (421)
.+. .++||++||...+. +.++...|+.||.+.+.+++.++.++ ||++++|+||.|.
T Consensus 201 ~m~~~~~~~~~~~g~IV~isS~~~~~------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~ 268 (328)
T 2qhx_A 201 RVAGTPAKHRGTNYSIINMVDAMTNQ------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSV 268 (328)
T ss_dssp HHHHSCGGGSCSCEEEEEECCTTTTS------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS
T ss_pred HHHhcCCcCCCCCcEEEEECchhhcc------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccc
Confidence 230 24999999987653 22456789999999999999998874 8999999999999
Q ss_pred CCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 274 GPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 274 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
++. . . . ......+....+.. .-+..++|+|++++.++........|+++++.+|..
T Consensus 269 T~~-~-~-~-~~~~~~~~~~~p~~-----------~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 324 (328)
T 2qhx_A 269 LVD-D-M-P-PAVWEGHRSKVPLY-----------QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 324 (328)
T ss_dssp CCC-C-S-C-HHHHHHHHTTCTTT-----------TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCc-c-c-c-HHHHHHHHhhCCCC-----------CCCCCHHHHHHHHHHHhCccccCccCcEEEECCCcc
Confidence 886 2 1 1 23333333322210 026789999999999997654567899999988753
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-26 Score=208.17 Aligned_cols=208 Identities=16% Similarity=0.105 Sum_probs=154.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||.+++++|+++|++|++++|+.+..+...+..........++.++.+|++|.++++++++.+
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999654333222222221112267899999999999999988765
Q ss_pred ---CCcEEEEcccccCc---hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV---RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~---~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||+... ..+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~------------ 150 (250)
T 3nyw_A 84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKN-GYIFNVASRAAKY------------ 150 (250)
T ss_dssp HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECC-----------------
T ss_pred hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEEccHHhcC------------
Confidence 68999999998543 22344566889999999999998873 3443 4999999977542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
...+...|+.||.+.+.+++.++.++ |+++++|+||.|.++ +..... .. .....+
T Consensus 151 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~----------~~~~~~--~~----------~~~~~~ 208 (250)
T 3nyw_A 151 GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD----------MAKKAG--TP----------FKDEEM 208 (250)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH----------HHHHTT--CC----------SCGGGS
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc----------hhhhcC--CC----------cccccC
Confidence 12346889999999999999999874 899999999999875 111111 11 112347
Q ss_pred ccHHHHHHHHHHhhhcCC
Q 043169 312 TYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~ 329 (421)
++++|+|++++.++..+.
T Consensus 209 ~~p~dva~~v~~l~s~~~ 226 (250)
T 3nyw_A 209 IQPDDLLNTIRCLLNLSE 226 (250)
T ss_dssp BCHHHHHHHHHHHHTSCT
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 899999999999998663
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-26 Score=206.71 Aligned_cols=219 Identities=16% Similarity=0.110 Sum_probs=161.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|+++||||+|+||++++++|+++|++|++++|+.+. ... .. ++.++.+|++| +++.++++.+
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~-------~~~-~~---~~~~~~~D~~~-~~~~~~~~~~~~~~g 69 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE-------AAQ-SL---GAVPLPTDLEK-DDPKGLVKRALEALG 69 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH-------HHH-HH---TCEEEECCTTT-SCHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH-------HHH-hh---CcEEEecCCch-HHHHHHHHHHHHHcC
Confidence 5899999999999999999999999999999996532 111 11 27889999999 8777766543
Q ss_pred CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.... .
T Consensus 70 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~----------~ 138 (239)
T 2ekp_A 70 GLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGW-GRVLFIGSVTTFTAGG----------P 138 (239)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCCT----------T
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECchhhccCCC----------C
Confidence 689999999975421 2334566889999999999888873 3443 4999999988764211 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
++...|+.||.+.+.+++.++.+. |+++++|+||.+.++..........+...+....+ ...+.+
T Consensus 139 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p------------~~~~~~ 206 (239)
T 2ekp_A 139 VPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIP------------MGRWAR 206 (239)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCT------------TSSCBC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcCC------------CCCCcC
Confidence 356789999999999999998874 89999999999998732110000122222222211 123788
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
++|+|++++.++........|+.+++.++.
T Consensus 207 ~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 207 PEEIARVAAVLCGDEAEYLTGQAVAVDGGF 236 (239)
T ss_dssp HHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHHHHHHcCchhcCCCCCEEEECCCc
Confidence 999999999999765445678999998764
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-27 Score=217.10 Aligned_cols=235 Identities=16% Similarity=0.087 Sum_probs=163.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh---cCCceEEEEcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL---NNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+++|+|+||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|.++++++++.+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAG----VQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKV 80 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999954211 11111111 1246889999999999999988775
Q ss_pred -----CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHH----HHhcC--CCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEA----CKSAN--PQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~----~~~~~--~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||... .++++..+++|+.|+.++.+. +++.+ ..++||++||...+..
T Consensus 81 ~~~~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------- 146 (267)
T 2gdz_A 81 VDHFGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP---------- 146 (267)
T ss_dssp HHHHSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC----------
T ss_pred HHHcCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC----------
Confidence 6899999999753 356778999999976655554 44432 1249999999887631
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH--HHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 234 RTDQPASLYAATKKAGEEIAHTY--NHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~--~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.++...|+.||.+.+.+++.+ +.+ .|+++++|+||.+.++....... ... . +...............
T Consensus 147 --~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~----~-~~~~~~~~~~~~~~~~ 218 (267)
T 2gdz_A 147 --VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEK-EEN----M-GQYIEYKDHIKDMIKY 218 (267)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGC-HHH----H-GGGGGGHHHHHHHHHH
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhcccc-ccc----c-chhhhHHHHHHHHhcc
Confidence 234568999999999999875 233 58999999999998862110000 000 0 0000000000000112
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHH
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKL 350 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el 350 (421)
..+++++|+|++++.++... ...|+++++.+++.+++.|+
T Consensus 219 ~~~~~~~dvA~~v~~l~s~~--~~~G~~~~v~gg~~~~~~~~ 258 (267)
T 2gdz_A 219 YGILDPPLIANGLITLIEDD--ALNGAIMKITTSKGIHFQDY 258 (267)
T ss_dssp HCCBCHHHHHHHHHHHHHCT--TCSSCEEEEETTTEEEECCC
T ss_pred ccCCCHHHHHHHHHHHhcCc--CCCCcEEEecCCCcccccCc
Confidence 34789999999999999876 47799999999887776553
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=208.35 Aligned_cols=227 Identities=17% Similarity=0.158 Sum_probs=163.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++|+++||||+|+||.+++++|+++|++|++++|+.+.. ....... ....++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREAL----EKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVV 79 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999954321 1111111 12346889999999999999888765
Q ss_pred ----CCcEEEEccccc-Cc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQA-GV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~-~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||.. .. ..+.++++..+++|+.|+.++++++.+ .+. ++||++||...+.
T Consensus 80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~--------- 149 (262)
T 1zem_A 80 RDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNY-GRIVNTASMAGVK--------- 149 (262)
T ss_dssp HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHS---------
T ss_pred HHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhcc---------
Confidence 789999999975 21 123345667899999999999988754 332 4999999987653
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC------------Ch-HHH-HHHHHHcCC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD------------MA-YFS-FTRNILQGK 294 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~------------~~-~~~-~~~~~~~~~ 294 (421)
..+....|+.||.+.+.+++.++.+ +||++++|+||.+.++..... .. ... ....+....
T Consensus 150 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (262)
T 1zem_A 150 ---GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSV 226 (262)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTS
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcC
Confidence 1234578999999999999999876 489999999999977621100 00 000 111111111
Q ss_pred CeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 295 PITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 295 ~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+ ..-+..++|+|++++.++........|+.+.+.+|
T Consensus 227 p------------~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 262 (262)
T 1zem_A 227 P------------MRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262 (262)
T ss_dssp T------------TSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESCC
T ss_pred C------------CCCCcCHHHHHHHHHHHcCchhcCcCCcEEecCCC
Confidence 1 11367889999999999876655677888888754
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=210.52 Aligned_cols=231 Identities=13% Similarity=0.018 Sum_probs=167.8
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEe-CCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH--------
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLD-NFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK-------- 155 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-------- 155 (421)
+.++++|++|||||+|+||.++++.|+++|++|++++ |+.+..+........ ....++.++.+|++|.+
T Consensus 4 m~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (291)
T 1e7w_A 4 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNA--RRPNSAITVQADLSNVATAPVSGAD 81 (291)
T ss_dssp ----CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSSSCBCCCC---
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhh--hcCCeeEEEEeecCCcccccccccc
Confidence 3447899999999999999999999999999999999 854322211111110 12357899999999999
Q ss_pred ---------HHHHHhhcc-----CCcEEEEcccccCch----hh--------------ccCCchhhhhhHHHHHHHHHHH
Q 043169 156 ---------LLAKLFDAV-----AFTHVMHLAAQAGVR----YA--------------MQNPHSYVHSNIAGLVTLLEAC 203 (421)
Q Consensus 156 ---------~~~~~~~~~-----~~d~vi~~Ag~~~~~----~~--------------~~~~~~~~~~N~~g~~~l~~~~ 203 (421)
++.++++.+ ++|+||||||+.... .+ .++++..+++|+.|+.++++++
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~ 161 (291)
T 1e7w_A 82 GSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAF 161 (291)
T ss_dssp -CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 999888765 789999999986421 12 3445678999999999999887
Q ss_pred Hh----cCC-----CCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEecc
Q 043169 204 KS----ANP-----QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFT 271 (421)
Q Consensus 204 ~~----~~~-----~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~ 271 (421)
.+ .+. .++||++||...+. +.+....|+.||.+.+.+++.++.+ +||++++|+||.
T Consensus 162 ~~~m~~~~~~~~~~~g~Iv~isS~~~~~------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~ 229 (291)
T 1e7w_A 162 AHRVAGTPAKHRGTNYSIINMVDAMTNQ------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL 229 (291)
T ss_dssp HHHHHTSCGGGSCSCEEEEEECCTTTTS------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred HHHHHhcCCCCCCCCcEEEEEechhhcC------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCC
Confidence 53 220 24999999987653 2245678999999999999999887 489999999999
Q ss_pred ccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 272 VYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 272 v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
|..+. . .. ......+....+.. .-+..++|+|++++.++........|+++++.++..
T Consensus 230 v~T~~-~--~~-~~~~~~~~~~~p~~-----------~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 287 (291)
T 1e7w_A 230 SVLVD-D--MP-PAVWEGHRSKVPLY-----------QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 287 (291)
T ss_dssp BCCGG-G--SC-HHHHHHHHTTCTTT-----------TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccCCc-c--CC-HHHHHHHHhhCCCC-----------CCCCCHHHHHHHHHHHhCCcccCccCcEEEECCCcc
Confidence 98774 2 11 23333333322210 025679999999999997655567899999987754
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=204.66 Aligned_cols=209 Identities=14% Similarity=0.126 Sum_probs=164.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
..+|+||||||+|+||++++++|+++|++|++++|+.+... -..+.+|++|.++++++++.+
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~---------------~~~~~~d~~d~~~v~~~~~~~~~~ 84 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA---------------DHSFTIKDSGEEEIKSVIEKINSK 84 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS---------------SEEEECSCSSHHHHHHHHHHHHTT
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc---------------ccceEEEeCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999765332 135789999999999998876
Q ss_pred --CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||.... ....++++..+++|+.|+.++++++.+... .++||++||...+. +.
T Consensus 85 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------~~ 152 (251)
T 3orf_A 85 SIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN------------RT 152 (251)
T ss_dssp TCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CC
T ss_pred cCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc------------CC
Confidence 68999999997532 223455678899999999999999875421 23899999987752 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
.+...|+.||.+.+.+++.++.+ +|+++++|+||.|.++ +....... .....+
T Consensus 153 ~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~----------~~~~~~~~------------~~~~~~ 210 (251)
T 3orf_A 153 SGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTP----------TNRKYMSD------------ANFDDW 210 (251)
T ss_dssp TTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCH----------HHHHHCTT------------SCGGGS
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCc----------chhhhccc------------cccccc
Confidence 45678999999999999999877 4799999999999875 11222221 123457
Q ss_pred ccHHHHHHHHHHhhhc-CCCCCCceEEEecCCCcc
Q 043169 312 TYIDDIVKGCLGSLDT-SAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~-~~~~~~~~~~~i~~~~~~ 345 (421)
++++|+|++++.++.. ......|+.+++.+++..
T Consensus 211 ~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 211 TPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKSKV 245 (251)
T ss_dssp BCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETTE
T ss_pred CCHHHHHHHHHHHhcCccccCCcceEEEEecCCcc
Confidence 8999999999999988 444678999999877653
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=204.96 Aligned_cols=231 Identities=13% Similarity=0.015 Sum_probs=173.4
Q ss_pred CCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCCCCC-ChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 87 RSGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFNNYY-DPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 87 ~~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
++++|+|+||||+ |+||.+++++|+++|++|++++|+.... ++...+... ....++.++.+|++|.++++++++.
T Consensus 17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (267)
T 3gdg_A 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEK--TYGIKAKAYKCQVDSYESCEKLVKD 94 (267)
T ss_dssp CCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHH--HHCCCEECCBCCTTCHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHH--hcCCceeEEecCCCCHHHHHHHHHH
Confidence 3789999999999 9999999999999999999999876543 222222221 1246799999999999999999887
Q ss_pred c-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCC
Q 043169 164 V-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 164 ~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
+ ++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+...
T Consensus 95 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~------ 167 (267)
T 3gdg_A 95 VVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGT-GSLVITASMSGHIAN------ 167 (267)
T ss_dssp HHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTSCC------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCC-ceEEEEccccccccC------
Confidence 6 789999999986532 134456678999999999999987 44443 499999997764211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIYG--LSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
...+...|+.||.+.+.+++.++.+++ +++++++||.|.++-.... .......+....+ .
T Consensus 168 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~------------~ 229 (267)
T 3gdg_A 168 ----FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV--PKETQQLWHSMIP------------M 229 (267)
T ss_dssp ----SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS--CHHHHHHHHTTST------------T
T ss_pred ----CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC--CHHHHHHHHhcCC------------C
Confidence 113467899999999999999998854 8999999999987633211 1122222333222 2
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..+.+++|+|++++.++........|+++++.+|..
T Consensus 230 ~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 230 GRDGLAKELKGAYVYFASDASTYTTGADLLIDGGYT 265 (267)
T ss_dssp SSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHhHhheeecCccccccCCEEEECCcee
Confidence 346778999999999998765677899999988753
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=205.62 Aligned_cols=212 Identities=14% Similarity=0.077 Sum_probs=153.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++|+|+||||+|+||++++++|+++| ++|++++|+.+..+. .. . ....++.++.+|++|.+++.++++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~----l~-~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE----LK-S-IKDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH----HH-T-CCCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHH----HH-h-ccCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999 999999996543321 11 1 13457899999999999999988854
Q ss_pred -----CCcEEEEcccccC-c----hhhccCCchhhhhhHHHHHHHHHHHHhc----------CC----CCeEEEEccccc
Q 043169 165 -----AFTHVMHLAAQAG-V----RYAMQNPHSYVHSNIAGLVTLLEACKSA----------NP----QPSIVWASSSSV 220 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~-~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~----------~~----~~riV~~SS~~v 220 (421)
++|+||||||... . ....++++..+++|+.|+.++++++.+. +. .++||++||...
T Consensus 76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 155 (250)
T 1yo6_A 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcc
Confidence 6799999999865 2 1223445678999999999998887532 30 249999999876
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeE
Q 043169 221 YGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT 297 (421)
Q Consensus 221 ~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
+..... + ..+..+...|+.||++.+.+++.++.++ |+++++|+||.|.++....
T Consensus 156 ~~~~~~----~-~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------------------ 212 (250)
T 1yo6_A 156 SITDNT----S-GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK------------------ 212 (250)
T ss_dssp CSTTCC----S-TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------
T ss_pred ccCCcc----c-ccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC------------------
Confidence 542211 0 1111456789999999999999999875 8999999999998762210
Q ss_pred EEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEec
Q 043169 298 VYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLG 340 (421)
Q Consensus 298 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~ 340 (421)
..+++++|+|++++.++........|..+.+.
T Consensus 213 -----------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~ 244 (250)
T 1yo6_A 213 -----------NAALTVEQSTAELISSFNKLDNSHNGRFFMRN 244 (250)
T ss_dssp -----------------HHHHHHHHHHHTTCCGGGTTCEEETT
T ss_pred -----------CCCCCHHHHHHHHHHHHhcccccCCCeEEEEC
Confidence 02567899999999999876433456655554
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-26 Score=210.97 Aligned_cols=228 Identities=14% Similarity=0.104 Sum_probs=168.8
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++++|+||||||+|+||.+++++|+++|++|++++|+.+.. +..... ...++.++.+|++|.++++++++.+
T Consensus 26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~----~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~ 99 (281)
T 3ppi_A 26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKG----KALADE--LGNRAEFVSTNVTSEDSVLAAIEAAN 99 (281)
T ss_dssp GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHH--HCTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHH----HHHHHH--hCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999954321 111111 1467999999999999999988754
Q ss_pred ---CCcEEEEc-ccccCch---------hhccCCchhhhhhHHHHHHHHHHHHhc---------CCCCeEEEEccccccC
Q 043169 165 ---AFTHVMHL-AAQAGVR---------YAMQNPHSYVHSNIAGLVTLLEACKSA---------NPQPSIVWASSSSVYG 222 (421)
Q Consensus 165 ---~~d~vi~~-Ag~~~~~---------~~~~~~~~~~~~N~~g~~~l~~~~~~~---------~~~~riV~~SS~~v~g 222 (421)
++|+|||| ||..... ...++++..+++|+.|+.++++++... +..++||++||...+.
T Consensus 100 ~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 179 (281)
T 3ppi_A 100 QLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE 179 (281)
T ss_dssp TSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS
T ss_pred HhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC
Confidence 57999999 5543221 122235678999999999999987521 1234999999988753
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEE
Q 043169 223 LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVY 299 (421)
Q Consensus 223 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (421)
+......|+.||.+.+.+++.++.++ |+++++|+||.|.++..... .......+....+.
T Consensus 180 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~--- 242 (281)
T 3ppi_A 180 ------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESV--GEEALAKFAANIPF--- 242 (281)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTT--CHHHHHHHHHTCCS---
T ss_pred ------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcc--cHHHHHHHHhcCCC---
Confidence 22456789999999999999998874 89999999999987622110 11222233332221
Q ss_pred ecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 300 RGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 300 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
...+.+++|+|++++.++.+. ...|+++++.+|..++
T Consensus 243 --------~~~~~~pedvA~~v~~l~s~~--~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 243 --------PKRLGTPDEFADAAAFLLTNG--YINGEVMRLDGAQRFT 279 (281)
T ss_dssp --------SSSCBCHHHHHHHHHHHHHCS--SCCSCEEEESTTCCCC
T ss_pred --------CCCCCCHHHHHHHHHHHHcCC--CcCCcEEEECCCcccC
Confidence 134788999999999999864 6789999999887654
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=209.13 Aligned_cols=214 Identities=18% Similarity=0.123 Sum_probs=153.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+||||.+++++|+++|++|++++|+.+..+........ .....+.++++|++|.++++++++.+
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 107 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGG--RTGNIVRAVVCDVGDPDQVAALFAAVRA 107 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999965433222222211 12234689999999999999998876
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHH----hcC-CCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK----SAN-PQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~-~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+ ..++||++||...+.
T Consensus 108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~--------- 178 (281)
T 4dry_A 108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT--------- 178 (281)
T ss_dssp HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC---------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC---------
Confidence 78999999998533 12344566799999999888888764 332 124999999987652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
...+...|+.||.+.+.+++.++.+ +||++++|+||.|.++-.. .+.. .... .......
T Consensus 179 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~----------~~~~----~~~~-~~~~~~~ 240 (281)
T 4dry_A 179 ---PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTA----------RMST----GVLQ-ANGEVAA 240 (281)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-----------------C----EEEC-TTSCEEE
T ss_pred ---CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhh----------hhcc----hhhh-hhhcccc
Confidence 2245688999999999999999877 5899999999999886221 1111 0000 0011122
Q ss_pred eecccHHHHHHHHHHhhhcCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~ 329 (421)
..++.++|+|++++.++..+.
T Consensus 241 ~~~~~pedvA~~v~fL~s~~~ 261 (281)
T 4dry_A 241 EPTIPIEHIAEAVVYMASLPL 261 (281)
T ss_dssp CCCBCHHHHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHhCCCc
Confidence 347899999999999998773
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=204.83 Aligned_cols=199 Identities=17% Similarity=0.145 Sum_probs=149.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
.+|+||||||+||||++++++|+++|++|++++|+.+.. +...... ..++.++.+|++|.++++++++.+
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 75 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRL----QQQELLL--GNAVIGIVADLAHHEDVDVAFAAAVEWG 75 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHH--GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHHh--cCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999964322 1111111 236899999999999999988865
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCC--CCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANP--QPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++...-. .++||++||...+. ..+
T Consensus 76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~------------~~~ 143 (235)
T 3l6e_A 76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV------------GKA 143 (235)
T ss_dssp CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS------------SCS
T ss_pred CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC------------CCC
Confidence 789999999985432 23455678899999999999988743211 12999999977642 223
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 238 PASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
....|+.||.+.+.+++.++.++ |+++++|+||.|.++..... .. . ....+..+
T Consensus 144 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~----------~~-~------------~~~~~~~p 200 (235)
T 3l6e_A 144 NESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNT----------DH-V------------DPSGFMTP 200 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC----------------------------------CBCH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhcc----------CC-C------------CCcCCCCH
Confidence 45789999999999999999874 79999999999987632210 00 0 01147889
Q ss_pred HHHHHHHHHhhhcC
Q 043169 315 DDIVKGCLGSLDTS 328 (421)
Q Consensus 315 ~Dva~a~~~~l~~~ 328 (421)
+|+|++++.++..+
T Consensus 201 edvA~~v~~l~~~~ 214 (235)
T 3l6e_A 201 EDAAAYMLDALEAR 214 (235)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999865
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-27 Score=207.37 Aligned_cols=191 Identities=17% Similarity=0.147 Sum_probs=147.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-CCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-AFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~d~v 169 (421)
|+|+||||+|+||++++++|+++ +|++++|+.+. ....... .. . .++.+|++|++++.++++.. ++|+|
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~----~~~~~~~-~~--~-~~~~~D~~~~~~~~~~~~~~~~id~v 70 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGA----LAELARE-VG--A-RALPADLADELEAKALLEEAGPLDLL 70 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHH----HHHHHHH-HT--C-EECCCCTTSHHHHHHHHHHHCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHH----HHHHHHh-cc--C-cEEEeeCCCHHHHHHHHHhcCCCCEE
Confidence 58999999999999999999999 99999985321 1111111 11 2 88999999999999999831 45999
Q ss_pred EEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 170 MHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 170 i~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
|||||..... ...++++..+++|+.|+.++++++++.+. ++||++||..+|. +..+...|+.+
T Consensus 71 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~iv~~sS~~~~~------------~~~~~~~Y~~s 137 (207)
T 2yut_A 71 VHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKG-ARAVFFGAYPRYV------------QVPGFAAYAAA 137 (207)
T ss_dssp EECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEE-EEEEEECCCHHHH------------SSTTBHHHHHH
T ss_pred EECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCC-cEEEEEcChhhcc------------CCCCcchHHHH
Confidence 9999986431 23445667899999999999999976654 4999999988763 22456789999
Q ss_pred HHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL 322 (421)
Q Consensus 246 K~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 322 (421)
|.+.|.+++.++.+ +|+++++++||.++++... +.+...+.+++++|+|++++
T Consensus 138 K~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~------------------------~~~~~~~~~~~~~dva~~~~ 193 (207)
T 2yut_A 138 KGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA------------------------PLGGPPKGALSPEEAARKVL 193 (207)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG------------------------GGTSCCTTCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc------------------------ccCCCCCCCCCHHHHHHHHH
Confidence 99999999999887 5999999999999987310 01223467999999999999
Q ss_pred HhhhcC
Q 043169 323 GSLDTS 328 (421)
Q Consensus 323 ~~l~~~ 328 (421)
.+++++
T Consensus 194 ~~~~~~ 199 (207)
T 2yut_A 194 EGLFRE 199 (207)
T ss_dssp HHHC--
T ss_pred HHHhCC
Confidence 999876
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=204.27 Aligned_cols=228 Identities=15% Similarity=0.158 Sum_probs=165.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+|+||.+++++|+++|++|++++|+.+. ...... ....++.++.+|++|.++++++++.+
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAER----LRELEV--AHGGNAVGVVGDVRSLQDQKRAAERCLA 75 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH--HTBTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHH----HHHHHH--HcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999985421 111111 12467899999999999999988876
Q ss_pred ---CCcEEEEcccccCchh---------hccCCchhhhhhHHHHHHHHHHHHhcC--CCCeEEEEccccccCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY---------AMQNPHSYVHSNIAGLVTLLEACKSAN--PQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~---------~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|+||||||+..... ..++++..+++|+.|+.++++++.+.. ..++||++||...+.
T Consensus 76 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------- 147 (281)
T 3zv4_A 76 AFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY-------- 147 (281)
T ss_dssp HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS--------
T ss_pred hcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc--------
Confidence 7899999999854211 112355688999999999998874321 014999999987652
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCC--h----HH--HHHHHHHcCCCeEEEe
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIYG--LSITGLRFFTVYGPWGRPDM--A----YF--SFTRNILQGKPITVYR 300 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~g--i~~~~vrp~~v~G~~~~~~~--~----~~--~~~~~~~~~~~~~~~~ 300 (421)
+......|+.||.+.+.+++.++.+++ |++++|+||.|.++-..... . .. .+...+....+
T Consensus 148 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 218 (281)
T 3zv4_A 148 ----PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLP----- 218 (281)
T ss_dssp ----SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCT-----
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCC-----
Confidence 224567899999999999999998853 99999999999887322110 0 00 01111222211
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhh-cCCCCCCceEEEecCCCc
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLD-TSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~-~~~~~~~~~~~~i~~~~~ 344 (421)
..-+..++|+|.+++.++. .......|+++++.+|..
T Consensus 219 -------~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~~ 256 (281)
T 3zv4_A 219 -------IGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGMG 256 (281)
T ss_dssp -------TSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSGG
T ss_pred -------CCCCCCHHHHHHHHHHhhcccccccccCcEEEECCCCc
Confidence 2236778999999999998 444457899999988753
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=202.25 Aligned_cols=213 Identities=15% Similarity=0.096 Sum_probs=154.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+++||||+|+||++++++|+++|++|++++|+.+..+...++.. ....++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 80 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELT---AAGAKVHVLELDVADRQGVDAAVASTVE 80 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999996432211111111 12357899999999999999988754
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||..... .+.++++..+++|+.|+.++++++. +.+ ++||++||...+.
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~----------- 147 (247)
T 2jah_A 81 ALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSSIAGRV----------- 147 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTC-----------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEccHHhcC-----------
Confidence 689999999986421 2334456789999999999998874 334 4999999987653
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..++...|+.||.+.+.+++.++.+ +||++++|+||.+.++....... ... .......+ + .+.
T Consensus 148 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~-~~~~~~~~---------~--~~~ 213 (247)
T 2jah_A 148 -NVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITH-TAT-KEMYEQRI---------S--QIR 213 (247)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCC-HHH-HHHHHHHT---------T--TSC
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccc-hhh-HHHHHhcc---------c--ccC
Confidence 2234678999999999999999877 48999999999998873221100 011 11111000 0 111
Q ss_pred cccHHHHHHHHHHhhhcCC
Q 043169 311 FTYIDDIVKGCLGSLDTSA 329 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~ 329 (421)
+++++|+|++++.++..+.
T Consensus 214 ~~~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 214 KLQAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp CBCHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 5789999999999998763
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-25 Score=209.61 Aligned_cols=222 Identities=12% Similarity=0.090 Sum_probs=164.4
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChh---HHHH-HHHhhcCCceEEEEcccCCHHHHHHHh
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPS---LKKA-RKALLNNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~-~~~~~~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
.++++|+||||||+|+||.+++++|+++|++|++++|+.+..+.. .... ........++.++.+|++|.+++++++
T Consensus 41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~ 120 (346)
T 3kvo_A 41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAV 120 (346)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 347899999999999999999999999999999999988765431 1111 111223467899999999999999999
Q ss_pred hcc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCC
Q 043169 162 DAV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 162 ~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~ 228 (421)
+.+ ++|+||||||+.... ...++++..+++|+.|+.++++++. +.+ .++||++||...+...
T Consensus 121 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS~~~~~~~---- 195 (346)
T 3kvo_A 121 EKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSK-VAHILNISPPLNLNPV---- 195 (346)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCS-SCEEEEECCCCCCCGG----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHcCCC----
Confidence 865 789999999986432 2234456789999999999999884 333 2499999998765310
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
.......|+.||.+.+.+++.++.++ ||++++|.||.+... .+.+.+....
T Consensus 196 ------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T---------~~~~~~~~~~------------ 248 (346)
T 3kvo_A 196 ------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT---------AAMDMLGGPG------------ 248 (346)
T ss_dssp ------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC---------HHHHHHCC--------------
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc---------HHHHhhcccc------------
Confidence 12356789999999999999999884 899999999964332 1222221111
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecC
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN 341 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~ 341 (421)
....+..++|+|++++.++.. .....|+.+ +.+
T Consensus 249 ~~~r~~~pedvA~~v~~L~s~-~~~itG~~i-vdg 281 (346)
T 3kvo_A 249 IESQCRKVDIIADAAYSIFQK-PKSFTGNFV-IDE 281 (346)
T ss_dssp CGGGCBCTHHHHHHHHHHHTS-CTTCCSCEE-EHH
T ss_pred ccccCCCHHHHHHHHHHHHhc-CCCCCceEE-ECC
Confidence 122366789999999999987 455667766 543
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=203.64 Aligned_cols=217 Identities=15% Similarity=0.054 Sum_probs=158.5
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
..+++|+||||||+||||++++++|+++|++|++++|+. + ..... ..+.++ +|+ .++++++++.+
T Consensus 15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~-------~--~~~~~--~~~~~~-~D~--~~~~~~~~~~~~ 80 (249)
T 1o5i_A 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------E--LLKRS--GHRYVV-CDL--RKDLDLLFEKVK 80 (249)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-------H--HHHHT--CSEEEE-CCT--TTCHHHHHHHSC
T ss_pred hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH-------H--HHHhh--CCeEEE-eeH--HHHHHHHHHHhc
Confidence 447899999999999999999999999999999999953 1 11111 356777 999 44566666655
Q ss_pred CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
++|+||||||..... ...++++..+++|+.|+.++++++ ++.+. ++||++||...+. +.
T Consensus 81 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------------~~ 147 (249)
T 1o5i_A 81 EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGW-GRIVAITSFSVIS------------PI 147 (249)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS------------CC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEcchHhcC------------CC
Confidence 689999999975432 123445678999999977665554 45553 4999999998764 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHH-HHHcCCCeEEEecCCCCcceeecc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTR-NILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
++...|+.||.+.+.+++.++.+ +|+++++|+||.++++..... ...... .+....+ ...+.
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~p------------~~~~~ 213 (249)
T 1o5i_A 148 ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKEL--LSEEKKKQVESQIP------------MRRMA 213 (249)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHH--SCHHHHHHHHTTST------------TSSCB
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCccccc--chhhHHHHHHhcCC------------CCCCc
Confidence 34678999999999999999877 589999999999998742100 001111 2222211 23478
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+++|+|++++.++........|++|++.++.
T Consensus 214 ~~~dvA~~i~~l~s~~~~~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 214 KPEEIASVVAFLCSEKASYLTGQTIVVDGGL 244 (249)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 9999999999998865455678999998875
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-26 Score=206.66 Aligned_cols=218 Identities=17% Similarity=0.133 Sum_probs=162.4
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEccc--CCHHHHHHHhh
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI--NDAKLLAKLFD 162 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~~~~~~~ 162 (421)
+..+++|+|+||||+|+||++++++|+++|++|++++|+.+..+....... .....++.++.+|+ +|.+++.++++
T Consensus 9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~d~d~~~~~~~~~~~~ 86 (247)
T 3i1j_A 9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIK--SAGQPQPLIIALNLENATAQQYRELAA 86 (247)
T ss_dssp TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--HTTSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHH--hcCCCCceEEEeccccCCHHHHHHHHH
Confidence 345789999999999999999999999999999999996543222222211 11235677788777 99999998887
Q ss_pred cc-----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCC
Q 043169 163 AV-----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 163 ~~-----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~ 228 (421)
.+ ++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+ .++||++||...+.
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~------ 159 (247)
T 3i1j_A 87 RVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSE-DASIAFTSSSVGRK------ 159 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SEEEEEECCGGGTS------
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCeEEEEcchhhcC------
Confidence 65 78999999998532 12344566889999999999999883 333 34999999987652
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHIY----GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
...+...|+.||.+.+.+++.++.++ |+++++|+||.|.++ +.......
T Consensus 160 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~----------~~~~~~~~----------- 212 (247)
T 3i1j_A 160 ------GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG----------MRAQAYPD----------- 212 (247)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSH----------HHHHHSTT-----------
T ss_pred ------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCc----------cchhcccc-----------
Confidence 22456789999999999999998773 799999999999775 11111111
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEe
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNL 339 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i 339 (421)
.....+..++|+|++++.++........|+.+++
T Consensus 213 -~~~~~~~~p~dva~~~~~l~s~~~~~itG~~i~~ 246 (247)
T 3i1j_A 213 -ENPLNNPAPEDIMPVYLYLMGPDSTGINGQALNA 246 (247)
T ss_dssp -SCGGGSCCGGGGTHHHHHHHSGGGTTCCSCEEEC
T ss_pred -cCccCCCCHHHHHHHHHHHhCchhccccCeeecC
Confidence 1122356789999999999976655667777765
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=203.77 Aligned_cols=209 Identities=14% Similarity=0.149 Sum_probs=159.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
++|+||||||+|+||++++++|+++|++|++++|+.+..+ ....++.+|++|.++++++++.+
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 68 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------------DSNILVDGNKNWTEQEQSILEQTASSL 68 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999765322 23567889999999998887742
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||.... ....++++..+++|+.|+.++++++.+... .++||++||...+. +
T Consensus 69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------~ 136 (236)
T 1ooe_A 69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG------------P 136 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------C
T ss_pred CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc------------C
Confidence 68999999997542 223445678899999999999999875421 13999999988752 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
.++...|+.||.+.+.+++.++.++ |+++++|+||.+.++. ........ ....
T Consensus 137 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~----------~~~~~~~~------------~~~~ 194 (236)
T 1ooe_A 137 TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM----------NRKWMPNA------------DHSS 194 (236)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH----------HHHHSTTC------------CGGG
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc----------hhhcCCCc------------cccc
Confidence 2456789999999999999998765 4999999999998861 11111111 1123
Q ss_pred cccHHHHHHHHHHhh-hcCCCCCCceEEEecCCCc
Q 043169 311 FTYIDDIVKGCLGSL-DTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l-~~~~~~~~~~~~~i~~~~~ 344 (421)
++.++|+|++++.++ ........|+.+.+.++..
T Consensus 195 ~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg~~ 229 (236)
T 1ooe_A 195 WTPLSFISEHLLKWTTETSSRPSSGALLKITTENG 229 (236)
T ss_dssp CBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETT
T ss_pred cCCHHHHHHHHHHHHcCCCcccccccEEEEecCCC
Confidence 577899999999777 3333356788898877643
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=201.53 Aligned_cols=214 Identities=16% Similarity=0.095 Sum_probs=161.3
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCC---CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhh
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRG---DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
..+++|+||||||+|+||++++++|+++| ++|++++|+.+..+. ...... ...++.++.+|++|.++++++++
T Consensus 17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~-~~~l~~---~~~~~~~~~~Dl~~~~~v~~~~~ 92 (267)
T 1sny_A 17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LEDLAK---NHSNIHILEIDLRNFDAYDKLVA 92 (267)
T ss_dssp ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH-HHHHHH---HCTTEEEEECCTTCGGGHHHHHH
T ss_pred cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHH-HHHhhc---cCCceEEEEecCCChHHHHHHHH
Confidence 34788999999999999999999999999 999999998765432 222211 23579999999999999998887
Q ss_pred cc-------CCcEEEEcccccC-c----hhhccCCchhhhhhHHHHHHHHHHHHhc----------CC----CCeEEEEc
Q 043169 163 AV-------AFTHVMHLAAQAG-V----RYAMQNPHSYVHSNIAGLVTLLEACKSA----------NP----QPSIVWAS 216 (421)
Q Consensus 163 ~~-------~~d~vi~~Ag~~~-~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~----------~~----~~riV~~S 216 (421)
.+ ++|+||||||... . ....++++..+++|+.|+.++++++.+. +. .++||++|
T Consensus 93 ~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~is 172 (267)
T 1sny_A 93 DIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMS 172 (267)
T ss_dssp HHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEEC
T ss_pred HHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEe
Confidence 54 5799999999865 1 2233455678999999999999988543 10 24999999
Q ss_pred cccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcC
Q 043169 217 SSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQG 293 (421)
Q Consensus 217 S~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~ 293 (421)
|...+.... +..+...|+.||.+.+.+++.++.+ +|+++++|+||.|.++-...
T Consensus 173 S~~~~~~~~---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-------------- 229 (267)
T 1sny_A 173 SILGSIQGN---------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS-------------- 229 (267)
T ss_dssp CGGGCSTTC---------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT--------------
T ss_pred cccccccCC---------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC--------------
Confidence 988764211 1135678999999999999999887 58999999999998763211
Q ss_pred CCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecC
Q 043169 294 KPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN 341 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~ 341 (421)
..++.++|+|+.++.++........|..+.+.+
T Consensus 230 ---------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g 262 (267)
T 1sny_A 230 ---------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDG 262 (267)
T ss_dssp ---------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEECTTS
T ss_pred ---------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEccCC
Confidence 024678999999999998764445566665543
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=207.49 Aligned_cols=223 Identities=13% Similarity=0.055 Sum_probs=155.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--CCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--AFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d~ 168 (421)
|+||||||+||||++++++|+++|++|++++|+.+..+. . +.+|++|.++++++++++ ++|+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---------------~-~~~Dl~~~~~v~~~~~~~~~~id~ 65 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---------------D-LSTAEGRKQAIADVLAKCSKGMDG 65 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------C-TTSHHHHHHHHHHHHTTCTTCCSE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---------------c-cccCCCCHHHHHHHHHHhCCCCCE
Confidence 689999999999999999999999999999996543211 1 578999999999999876 7899
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC-----C------
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA-----D------ 233 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~-----~------ 233 (421)
||||||.... ...++..+++|+.|+.++++++. +.+. ++||++||...+......+..++ +
T Consensus 66 lv~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
T 1fjh_A 66 LVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQ-PAAVVISSVASAHLAFDKNPLALALEAGEEAKARA 141 (257)
T ss_dssp EEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHH
T ss_pred EEECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEECChhhhccccccchhhhhhcccchhhhhh
Confidence 9999997541 24467899999999999999885 3332 49999999988732111010000 0
Q ss_pred -----CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 234 -----RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 234 -----~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
.+..+...|+.||.+.+.+++.++.+ +|+++++|+||.|.++...... ........... + .
T Consensus 142 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~-----~-----~ 210 (257)
T 1fjh_A 142 IVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGL-QDPRYGESIAK-----F-----V 210 (257)
T ss_dssp HHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------------C-----C
T ss_pred hhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhc-cchhHHHHHHh-----c-----c
Confidence 11124578999999999999998876 5899999999999987432110 00000000000 0 0
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.....+.+++|+|++++.++..+.....|+.+++.++..
T Consensus 211 ~~~~~~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG~~ 249 (257)
T 1fjh_A 211 PPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGID 249 (257)
T ss_dssp CSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTHH
T ss_pred cccCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECCCcc
Confidence 111247899999999999998765567789999988753
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-24 Score=195.69 Aligned_cols=218 Identities=16% Similarity=0.187 Sum_probs=155.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
|+++||||+|+||++++++|+++|++|++++|+.+. ....... . ..++.++.+|++|.++++++++.+ +
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 74 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQER----LQELKDE-L-GDNLYIAQLDVRNRAAIEEMLASLPAEWCN 74 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHH-H-CTTEEEEECCTTCHHHHHHHHHTSCTTTCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHH-h-cCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 589999999999999999999999999999995421 1111111 1 247899999999999999999865 6
Q ss_pred CcEEEEcccccC--c---hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAG--V---RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 166 ~d~vi~~Ag~~~--~---~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
+|+||||||+.. . ..+.++++..+++|+.|+.++++++. +.+. ++||++||...+. +.
T Consensus 75 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~------------~~ 141 (248)
T 3asu_A 75 IDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNH-GHIINIGSTAGSW------------PY 141 (248)
T ss_dssp CCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTS------------CC
T ss_pred CCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEccchhcc------------CC
Confidence 899999999752 1 22344567889999999998888875 3443 4999999987652 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecccc-CCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVY-GPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
++...|+.||.+.+.+++.++.+. ||++++|+||.|. .+..... +... .......+ .....+
T Consensus 142 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~-----~~~~--~~~~~~~~-------~~~~~~ 207 (248)
T 3asu_A 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVR-----FKGD--DGKAEKTY-------QNTVAL 207 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC------------------------------------CCB
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhc-----ccCc--hHHHHHHH-------hccCCC
Confidence 446789999999999999999874 8999999999999 4521100 0000 00000000 011246
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+++|+|++++.++..+ ....+..+.+...
T Consensus 208 ~p~dvA~~v~~l~s~~-~~~~g~~i~v~~~ 236 (248)
T 3asu_A 208 TPEDVSEAVWWVSTLP-AHVNINTLEMMPV 236 (248)
T ss_dssp CHHHHHHHHHHHHHSC-TTCCCCEEEECCT
T ss_pred CHHHHHHHHHHHhcCC-ccceeeEEEEccc
Confidence 8999999999999865 3466777777654
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=196.45 Aligned_cols=204 Identities=15% Similarity=0.083 Sum_probs=146.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
.+|+|+||||+|+||++++++|+++|++|++++|+.+. ...... . ..++.++.+|++|.++++++++.+
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKR----LQALAA-E--LEGALPLPGDVREEGDWARAVAAMEEAF 76 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH-H--STTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHH-H--hhhceEEEecCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999995321 111111 1 137889999999999999888764
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... ...++++..+++|+.|+.++++.+ ++.+. ++||++||...+. +
T Consensus 77 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~------------~ 143 (234)
T 2ehd_A 77 GELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGG-GTIVNVGSLAGKN------------P 143 (234)
T ss_dssp SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC-EEEEEECCTTTTS------------C
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-cEEEEECCchhcC------------C
Confidence 689999999975431 123445678999999987666654 44453 4999999988763 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
..+...|+.+|.+.+.+++.++.+ .|+++++++||.+.++.... . . . . ..++
T Consensus 144 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----------~-~-~---------~----~~~~ 198 (234)
T 2ehd_A 144 FKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN----------T-P-G---------Q----AWKL 198 (234)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC-----------------------------------------C
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc----------c-c-c---------c----cCCC
Confidence 245678999999999999998876 48999999999998762210 0 0 0 0 0157
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEE
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIF 337 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~ 337 (421)
+++|+|++++.++..+.....+++.
T Consensus 199 ~~~dvA~~~~~l~~~~~~~~~g~~~ 223 (234)
T 2ehd_A 199 KPEDVAQAVLFALEMPGHAMVSEIE 223 (234)
T ss_dssp CHHHHHHHHHHHHHSCCSSCCCEEE
T ss_pred CHHHHHHHHHHHhCCCcccccceEE
Confidence 8999999999999876544455544
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=207.23 Aligned_cols=204 Identities=15% Similarity=0.026 Sum_probs=154.9
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.++++|+||||||+|+||++++++|+++|++|++++|+.+..+...+... ....++.++.+|++|.++++++++.+
T Consensus 26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~~~~~ 102 (272)
T 1yb1_A 26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCK---GLGAKVHTFVVDCSNREDIYSSAKKV 102 (272)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHH---hcCCeEEEEEeeCCCHHHHHHHHHHH
Confidence 445789999999999999999999999999999999995432211111111 12357899999999999999988764
Q ss_pred -----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|+||||||..... ...++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 103 ~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~--------- 172 (272)
T 1yb1_A 103 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNH-GHIVTVASAAGHV--------- 172 (272)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCCC-CC---------
T ss_pred HHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEechhhcC---------
Confidence 689999999986432 2334566889999999888777763 3443 4999999988753
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh------CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHIY------GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.++...|+.||.+.+.+++.++.++ |+++++|+||.+.++..... .
T Consensus 173 ---~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~------------------------~ 225 (272)
T 1yb1_A 173 ---SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP------------------------S 225 (272)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT------------------------H
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc------------------------c
Confidence 11345779999999999999998774 89999999999998742210 0
Q ss_pred cceeecccHHHHHHHHHHhhhcC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
.....+++++|+|++++.++..+
T Consensus 226 ~~~~~~~~~~dva~~i~~~~~~~ 248 (272)
T 1yb1_A 226 TSLGPTLEPEEVVNRLMHGILTE 248 (272)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHTT
T ss_pred ccccCCCCHHHHHHHHHHHHHcC
Confidence 11234788999999999999876
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=200.88 Aligned_cols=217 Identities=16% Similarity=0.107 Sum_probs=160.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChh---HHHHH-HHhhcCCceEEEEcccCCHHHHHHHhh
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPS---LKKAR-KALLNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~-~~~~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
++++|++|||||+|+||.+++++|+++|++|++++|+.+..+.. ..... .......++.++.+|++|.++++++++
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA 82 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999987654321 22111 111234678999999999999999988
Q ss_pred cc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCC
Q 043169 163 AV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPF 229 (421)
Q Consensus 163 ~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~ 229 (421)
.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++.. .+ .++||++||...+...
T Consensus 83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~----- 156 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAP-NPHILTLAPPPSLNPA----- 156 (274)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSS-SCEEEECCCCCCCCHH-----
T ss_pred HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcC-CceEEEECChHhcCCC-----
Confidence 65 789999999986432 23344567899999999999998743 33 3499999998764210
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEecc-ccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 230 SEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFT-VYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 230 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~-v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
...+...|+.||.+.+.+++.++.+ +||++++|+||. +-.+-. ....+
T Consensus 157 -----~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~-----------~~~~~------------ 208 (274)
T 3e03_A 157 -----WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAI-----------NMLPG------------ 208 (274)
T ss_dssp -----HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC------------------C------------
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchh-----------hhccc------------
Confidence 0134567999999999999999987 489999999995 444311 01111
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEE
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIF 337 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~ 337 (421)
.....+..++|+|++++.++........|+.+
T Consensus 209 ~~~~~~~~pedvA~~v~~l~s~~~~~itG~~i 240 (274)
T 3e03_A 209 VDAAACRRPEIMADAAHAVLTREAAGFHGQFL 240 (274)
T ss_dssp CCGGGSBCTHHHHHHHHHHHTSCCTTCCSCEE
T ss_pred ccccccCCHHHHHHHHHHHhCccccccCCeEE
Confidence 11123678999999999999876556667776
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-25 Score=201.09 Aligned_cols=209 Identities=13% Similarity=0.092 Sum_probs=160.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
.++|+|+||||+|+||++++++|+++|++|++++|+.+... ....++.+|++|.++++++++.+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~v~~~~~~~~~~ 71 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------------SASVIVKMTDSFTEQADQVTAEVGKL 71 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------------SEEEECCCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-------------CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999765322 13567899999999998888752
Q ss_pred ----CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||.... ....++++..+++|+.|+.++++++.+... .++||++||...+.
T Consensus 72 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------ 139 (241)
T 1dhr_A 72 LGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD------------ 139 (241)
T ss_dssp HTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------
T ss_pred hCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc------------
Confidence 68999999997542 223345667899999999999999865411 13999999988763
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
..++...|+.||.+.+.+++.++.+. |+++++|+||.+.++ +........ ...
T Consensus 140 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~----------~~~~~~~~~------------~~~ 197 (241)
T 1dhr_A 140 GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP----------MNRKSMPEA------------DFS 197 (241)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH----------HHHHHSTTS------------CGG
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCc----------cccccCcch------------hhc
Confidence 22356789999999999999998753 699999999998775 111111111 112
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.++.++|+|++++.++........|+.+.+.++.
T Consensus 198 ~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g~~ 231 (241)
T 1dhr_A 198 SWTPLEFLVETFHDWITGNKRPNSGSLIQVVTTD 231 (241)
T ss_dssp GSEEHHHHHHHHHHHHTTTTCCCTTCEEEEEEET
T ss_pred cCCCHHHHHHHHHHHhcCCCcCccceEEEEeCCC
Confidence 3567899999999999876556678999887654
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-25 Score=206.16 Aligned_cols=217 Identities=17% Similarity=0.118 Sum_probs=152.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|+||||||+|+||+++++.|+++|++|++++|+.+..+....... .......+.++.+|++|.++++++++.+
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 107 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK-SAGYPGTLIPYRCDLSNEEDILSMFSAIRS 107 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHH-hcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999995432211111111 1111246889999999999999988754
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHH----HHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAG----LVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g----~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||..... ...++++..+++|+.| +..+++.+++.+. .++||++||...+..
T Consensus 108 ~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~--------- 178 (279)
T 1xg5_A 108 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV--------- 178 (279)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC---------
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc---------
Confidence 689999999976432 1234456789999999 6666666777664 249999999887631
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
.+..+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++... ........... ....
T Consensus 179 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~----------~~~~~~~~~~~----~~~~ 243 (279)
T 1xg5_A 179 -LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAF----------KLHDKDPEKAA----ATYE 243 (279)
T ss_dssp -CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHH----------HHTTTCHHHHH----HHHC
T ss_pred -CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhh----------hhcccChhHHh----hhcc
Confidence 12234578999999999999988765 3799999999999886210 00000000000 0001
Q ss_pred eeecccHHHHHHHHHHhhhcC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~ 328 (421)
...+++++|+|++++.++..+
T Consensus 244 ~~~~~~~~dvA~~i~~l~~~~ 264 (279)
T 1xg5_A 244 QMKCLKPEDVAEAVIYVLSTP 264 (279)
T ss_dssp ---CBCHHHHHHHHHHHHHSC
T ss_pred cccCCCHHHHHHHHHHHhcCC
Confidence 124788999999999999876
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-25 Score=204.35 Aligned_cols=219 Identities=14% Similarity=0.025 Sum_probs=159.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKK-RGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.++|+||||||+||||++++++|++ +|++|++++|+.+..+....... ....++.++.+|++|.++++++++.+
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ---AEGLSPRFHQLDIDDLQSIRALRDFLRK 78 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHH---HTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHH---hcCCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999 99999999995432211111111 11357899999999999999998865
Q ss_pred ---CCcEEEEcccccCchhh----ccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCC-CC----------
Q 043169 165 ---AFTHVMHLAAQAGVRYA----MQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGL-NE---------- 225 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~-~~---------- 225 (421)
++|+||||||....... .++++..+++|+.|+.++++++.+... .++||++||...+.. ..
T Consensus 79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~ 158 (276)
T 1wma_A 79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFR 158 (276)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHH
T ss_pred hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcc
Confidence 68999999998643221 244567899999999999999976521 239999999776521 00
Q ss_pred CCCCCCCC------------------CCCCCCChHHHHHHHHHHHHHHHHHH-------hCCcEEEEEeccccCCCCCCC
Q 043169 226 NVPFSEAD------------------RTDQPASLYAATKKAGEEIAHTYNHI-------YGLSITGLRFFTVYGPWGRPD 280 (421)
Q Consensus 226 ~~~~~e~~------------------~~~~~~~~Y~~sK~~~e~~~~~~~~~-------~gi~~~~vrp~~v~G~~~~~~ 280 (421)
..++.|++ ....|...|+.||.+.+.+++.++.+ .|+++++|+||.|.++-...
T Consensus 159 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~- 237 (276)
T 1wma_A 159 SETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP- 237 (276)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT-
T ss_pred ccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc-
Confidence 01111111 01124488999999999999988876 48999999999998873221
Q ss_pred ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCC--CCCCceEEE
Q 043169 281 MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA--GPAPYRIFN 338 (421)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~--~~~~~~~~~ 338 (421)
..+.+++|+|++++.++..+. ....|..|.
T Consensus 238 ----------------------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~ 269 (276)
T 1wma_A 238 ----------------------------KATKSPEEGAETPVYLALLPPDAEGPHGQFVS 269 (276)
T ss_dssp ----------------------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEEE
T ss_pred ----------------------------cccCChhHhhhhHhhhhcCcccccccCceEec
Confidence 126789999999999997552 245666665
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=202.43 Aligned_cols=222 Identities=16% Similarity=0.122 Sum_probs=155.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
++ |++|||||+|+||.+++++|+++|++|++++|+.+. ............++.++.+|++|.++++++++.+
T Consensus 20 ~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 94 (272)
T 2nwq_A 20 MS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREER----LQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEE 94 (272)
T ss_dssp -C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGG
T ss_pred cC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45 899999999999999999999999999999995421 1111111111147899999999999999999876
Q ss_pred --CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCC-eEEEEccccccCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQP-SIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~-riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++. +.+ .+ +||++||...+.
T Consensus 95 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~~IV~isS~~~~~---------- 163 (272)
T 2nwq_A 95 FATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHG-AGASIVNLGSVAGKW---------- 163 (272)
T ss_dssp GSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGTS----------
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeCCchhcc----------
Confidence 68999999998542 12334566789999999888777763 444 34 999999987652
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.+....|+.||.+.+.+++.++.+ +||++++|+||.|.++..... +... ........ ...
T Consensus 164 --~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-----~~~~--~~~~~~~~-------~~~ 227 (272)
T 2nwq_A 164 --PYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVR-----FGGD--QARYDKTY-------AGA 227 (272)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC----------------------------------CC
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcc-----cccc--hHHHHHhh-------ccC
Confidence 2234578999999999999999876 489999999999998732110 0000 00000000 011
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.++.++|+|++++.++..+ ....+..+.+.++
T Consensus 228 ~~~~pedvA~~v~~l~s~~-~~~~g~~i~v~~~ 259 (272)
T 2nwq_A 228 HPIQPEDIAETIFWIMNQP-AHLNINSLEIMPV 259 (272)
T ss_dssp CCBCHHHHHHHHHHHHTSC-TTEEEEEEEEEET
T ss_pred CCCCHHHHHHHHHHHhCCC-ccCccceEEEeec
Confidence 2478999999999999865 3456677777654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-24 Score=193.09 Aligned_cols=198 Identities=14% Similarity=0.111 Sum_probs=146.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--CCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--AFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--~~d~ 168 (421)
|+||||||+|+||.+++++|+++|++|++++|+.+. .+.... ....++.++.+|++|.++++++++.+ .+|+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~ 75 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESK----LSTVTN--CLSNNVGYRARDLASHQEVEQLFEQLDSIPST 75 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHH----HHHHHH--TCSSCCCEEECCTTCHHHHHHHHHSCSSCCSE
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH--HHhhccCeEeecCCCHHHHHHHHHHHhhcCCE
Confidence 689999999999999999999999999999995421 111111 12467899999999999999999886 3699
Q ss_pred EEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCC--CCeEEEEccccccCCCCCCCCCCCCCCCCCCChH
Q 043169 169 VMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANP--QPSIVWASSSSVYGLNENVPFSEADRTDQPASLY 242 (421)
Q Consensus 169 vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y 242 (421)
||||||..... ...++++..+++|+.|+.++++++.+... ..+||++||...+. +.++...|
T Consensus 76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~------------~~~~~~~Y 143 (230)
T 3guy_A 76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ------------PKAQESTY 143 (230)
T ss_dssp EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS------------CCTTCHHH
T ss_pred EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC------------CCCCCchh
Confidence 99999976432 23344567899999999999998854321 12899999988753 22456789
Q ss_pred HHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHH
Q 043169 243 AATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK 319 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 319 (421)
+.||.+.+.+++.++.++ |+++++|+||.|.++-... ... ......+.+++|+|+
T Consensus 144 ~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----------~~~------------~~~~~~~~~~~dvA~ 201 (230)
T 3guy_A 144 CAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWET----------SGK------------SLDTSSFMSAEDAAL 201 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC--------------------------------------CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHh----------cCC------------CCCcccCCCHHHHHH
Confidence 999999999999999885 8999999999998762211 000 011235789999999
Q ss_pred HHHHhhhcC
Q 043169 320 GCLGSLDTS 328 (421)
Q Consensus 320 a~~~~l~~~ 328 (421)
+++.++..+
T Consensus 202 ~i~~l~~~~ 210 (230)
T 3guy_A 202 MIHGALANI 210 (230)
T ss_dssp HHHHHCCEE
T ss_pred HHHHHHhCc
Confidence 999998755
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-24 Score=197.47 Aligned_cols=228 Identities=13% Similarity=0.030 Sum_probs=164.6
Q ss_pred CCCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGA--AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~--sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++|+++|||| +|+||+++++.|+++|++|++++|+.+. ..+... . ....++.++.+|++|+++++++++.+
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~-~-~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR---LIQRIT-D-RLPAKAPLLELDVQNEEHLASLAGRV 78 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHH---HHHHHH-T-TSSSCCCEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHH---HHHHHH-H-hcCCCceEEEccCCCHHHHHHHHHHH
Confidence 468899999999 9999999999999999999999985421 111111 1 12346889999999999999988854
Q ss_pred --------CCcEEEEcccccCc---------hhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCC
Q 043169 165 --------AFTHVMHLAAQAGV---------RYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNEN 226 (421)
Q Consensus 165 --------~~d~vi~~Ag~~~~---------~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~ 226 (421)
++|+||||||.... ..+.++++..+++|+.|+.++++++.+... .++||++||...++
T Consensus 79 ~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~---- 154 (269)
T 2h7i_A 79 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA---- 154 (269)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC----
T ss_pred HHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc----
Confidence 68999999998641 122344567899999999999999865421 13999999976532
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC------CCChH----HHHHHHHHcC
Q 043169 227 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGR------PDMAY----FSFTRNILQG 293 (421)
Q Consensus 227 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~------~~~~~----~~~~~~~~~~ 293 (421)
.+....|+.||.+.+.+++.++.++ ||++++|+||.|.++-.. ..... ..+...+...
T Consensus 155 ---------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (269)
T 2h7i_A 155 ---------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQR 225 (269)
T ss_dssp ---------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhcc
Confidence 2345789999999999999998774 899999999999775110 00000 0011111111
Q ss_pred CCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 294 KPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+. .+.+..++|+|++++.++........|+++.+.+|.
T Consensus 226 ~p~-----------~rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 264 (269)
T 2h7i_A 226 API-----------GWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGA 264 (269)
T ss_dssp CTT-----------CCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTG
T ss_pred CCc-----------ccCCCCHHHHHHHHHHHhCchhccCcceEEEecCCe
Confidence 110 002567899999999999876566789999998764
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=198.44 Aligned_cols=227 Identities=13% Similarity=0.082 Sum_probs=160.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH---CCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKK---RGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+++|++|||||+|+||.+++++|++ +|++|++++|+.+..+........ .....++.++.+|++|+++++++++.+
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGA-QQPDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHH-HCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHh-hCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence 6789999999999999999999999 899999999964322221111111 011356899999999999999888654
Q ss_pred -------CCc--EEEEcccccCc---h----hhccCCchhhhhhHHHHHHHHHHHHhcCC-----CCeEEEEccccccCC
Q 043169 165 -------AFT--HVMHLAAQAGV---R----YAMQNPHSYVHSNIAGLVTLLEACKSANP-----QPSIVWASSSSVYGL 223 (421)
Q Consensus 165 -------~~d--~vi~~Ag~~~~---~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-----~~riV~~SS~~v~g~ 223 (421)
++| +||||||.... . .+.++++..+++|+.|+.++++++.+... .++||++||...+.
T Consensus 83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~- 161 (259)
T 1oaa_A 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ- 161 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS-
T ss_pred HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC-
Confidence 468 99999998532 1 22345668999999999999999865432 23899999988753
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCCCC---hHHHHHHHHHcCCCeEEE
Q 043169 224 NENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRFFTVYGPWGRPDM---AYFSFTRNILQGKPITVY 299 (421)
Q Consensus 224 ~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~~vrp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~ 299 (421)
+.++...|+.||.+.+.+++.++.++ +|++++|+||.+.++-..... .-......+...
T Consensus 162 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------ 224 (259)
T 1oaa_A 162 -----------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKL------ 224 (259)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHH------
T ss_pred -----------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChhHHHHHHHh------
Confidence 22456789999999999999999885 499999999998765110000 000000001000
Q ss_pred ecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEec
Q 043169 300 RGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLG 340 (421)
Q Consensus 300 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~ 340 (421)
.....+.+++|+|++++.++... ....|+.+++.
T Consensus 225 ------~p~~~~~~p~dvA~~v~~l~~~~-~~itG~~i~vd 258 (259)
T 1oaa_A 225 ------KSDGALVDCGTSAQKLLGLLQKD-TFQSGAHVDFY 258 (259)
T ss_dssp ------HHTTCSBCHHHHHHHHHHHHHHC-CSCTTEEEETT
T ss_pred ------hhcCCcCCHHHHHHHHHHHHhhc-cccCCcEEecc
Confidence 00123678999999999998753 35667776653
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-24 Score=192.19 Aligned_cols=205 Identities=11% Similarity=0.024 Sum_probs=141.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+.+|+||||||+|+||++++++|+++| ++|++++|+.+.... ....++.++.+|++|.+++.++++++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 89 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK---------PYPTNSQIIMGDVLNHAALKQAMQGQ-- 89 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS---------SCCTTEEEEECCTTCHHHHHHHHTTC--
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc---------cccCCcEEEEecCCCHHHHHHHhcCC--
Confidence 456899999999999999999999999 899999996643322 12357999999999999999999977
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK 246 (421)
|+||||||.... ...+.++++++++.+.+ +||++||..+|+............ ....+...+
T Consensus 90 D~vv~~a~~~~~--------------~~~~~~~~~~~~~~~~~-~iV~iSS~~~~~~~~~~~~~~~~~---~~~~~~~~~ 151 (236)
T 3qvo_A 90 DIVYANLTGEDL--------------DIQANSVIAAMKACDVK-RLIFVLSLGIYDEVPGKFVEWNNA---VIGEPLKPF 151 (236)
T ss_dssp SEEEEECCSTTH--------------HHHHHHHHHHHHHTTCC-EEEEECCCCC-------------------CGGGHHH
T ss_pred CEEEEcCCCCch--------------hHHHHHHHHHHHHcCCC-EEEEEecceecCCCCcccccchhh---cccchHHHH
Confidence 999999985321 23577899999998865 999999999987543321111111 111222333
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
..+|..+ ++.|+++++||||.++++.... ..... ........+++++|+|++++.++.
T Consensus 152 ~~~~~~l----~~~gi~~~~vrPg~i~~~~~~~----------------~~~~~--~~~~~~~~~i~~~DvA~~i~~ll~ 209 (236)
T 3qvo_A 152 RRAADAI----EASGLEYTILRPAWLTDEDIID----------------YELTS--RNEPFKGTIVSRKSVAALITDIID 209 (236)
T ss_dssp HHHHHHH----HTSCSEEEEEEECEEECCSCCC----------------CEEEC--TTSCCSCSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHCCCCEEEEeCCcccCCCCcc----------------eEEec--cCCCCCCcEECHHHHHHHHHHHHc
Confidence 3444433 2469999999999999874321 11111 111122358999999999999999
Q ss_pred cCCCCCCceEEEecCCCc
Q 043169 327 TSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~ 344 (421)
.+.. ..+++|++++++.
T Consensus 210 ~~~~-~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 210 KPEK-HIGENIGINQPGT 226 (236)
T ss_dssp STTT-TTTEEEEEECSSC
T ss_pred Cccc-ccCeeEEecCCCC
Confidence 8742 4689999998763
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=187.60 Aligned_cols=203 Identities=15% Similarity=0.170 Sum_probs=148.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHH-HCCCcEEEEeCCCC-CCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALK-KRGDGVVGLDNFNN-YYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~-~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+|+|+||||+|+||++++++|+ ++|++|++++|+.+ ..+... ....++.++.+|++|.+++.++++++ |
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~~~~D~~d~~~~~~~~~~~--d 75 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI-------IDHERVTVIEGSFQNPGXLEQAVTNA--E 75 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH-------HTSTTEEEEECCTTCHHHHHHHHTTC--S
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc-------cCCCceEEEECCCCCHHHHHHHHcCC--C
Confidence 3569999999999999999999 89999999999543 221110 13468999999999999999999876 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCC-hHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPAS-LYAATK 246 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~-~Y~~sK 246 (421)
+||||||.. |+. +.++++++++.+.+ +||++||..+|+..... ..+.. ..... .|+.+|
T Consensus 76 ~vv~~ag~~---------------n~~-~~~~~~~~~~~~~~-~iv~iSs~~~~~~~~~~-~~~~~--~~~~~~~y~~~K 135 (221)
T 3r6d_A 76 VVFVGAMES---------------GSD-MASIVKALSRXNIR-RVIGVSMAGLSGEFPVA-LEKWT--FDNLPISYVQGE 135 (221)
T ss_dssp EEEESCCCC---------------HHH-HHHHHHHHHHTTCC-EEEEEEETTTTSCSCHH-HHHHH--HHTSCHHHHHHH
T ss_pred EEEEcCCCC---------------Chh-HHHHHHHHHhcCCC-eEEEEeeceecCCCCcc-ccccc--ccccccHHHHHH
Confidence 999999852 445 89999999998865 99999999988632110 00000 01123 799999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhh-
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL- 325 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l- 325 (421)
.++|.+++. .|+++++||||.++++..... ..... ........+++.+|+|++++.++
T Consensus 136 ~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~---------------~~~~~--~~~~~~~~~~~~~dvA~~~~~l~~ 194 (221)
T 3r6d_A 136 RQARNVLRE----SNLNYTILRLTWLYNDPEXTD---------------YELIP--EGAQFNDAQVSREAVVKAIFDILH 194 (221)
T ss_dssp HHHHHHHHH----SCSEEEEEEECEEECCTTCCC---------------CEEEC--TTSCCCCCEEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHh----CCCCEEEEechhhcCCCCCcc---------------eeecc--CCccCCCceeeHHHHHHHHHHHHH
Confidence 999988764 699999999999998732211 11111 11111234899999999999999
Q ss_pred -hcCCCCCCceEEEecCCC
Q 043169 326 -DTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 326 -~~~~~~~~~~~~~i~~~~ 343 (421)
..+. ...++.+.+.++.
T Consensus 195 ~~~~~-~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 195 AADET-PFHRTSIGVGEPG 212 (221)
T ss_dssp CSCCG-GGTTEEEEEECTT
T ss_pred hcChh-hhhcceeeecCCC
Confidence 6653 2456778887654
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=200.02 Aligned_cols=205 Identities=16% Similarity=0.111 Sum_probs=152.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.+++|+|+||||+||||.+++++|+++|++|++++|+.+..+....... .....++.++.+|++|.++++++++.+
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 102 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL--ELGAASAHYIAGTMEDMTFAEQFVAQAGK 102 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--HHTCSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--HhCCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999996532221111111 112246899999999999999888754
Q ss_pred ---CCcEEEEc-ccccCchh---hccCCchhhhhhHHHHHHHHHHHHhc---CCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHL-AAQAGVRY---AMQNPHSYVHSNIAGLVTLLEACKSA---NPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ---~~d~vi~~-Ag~~~~~~---~~~~~~~~~~~N~~g~~~l~~~~~~~---~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+|||| ||...... ..++.+..+++|+.|+.++++++.+. + .++||++||...+.
T Consensus 103 ~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~------------ 169 (286)
T 1xu9_A 103 LMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-NGSIVVVSSLAGKV------------ 169 (286)
T ss_dssp HHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEGGGTS------------
T ss_pred HcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC-CCEEEEECCccccc------------
Confidence 68999999 56643221 23344678999999999998887432 2 24999999987653
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~-----gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.++...|+.||.+.+.+++.++.++ |+++++++||.+.++. ...... +....
T Consensus 170 ~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~----------~~~~~~------------~~~~~ 227 (286)
T 1xu9_A 170 AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET----------AMKAVS------------GIVHM 227 (286)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH----------HHHHSC------------GGGGG
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh----------HHHhcc------------ccccC
Confidence 22456789999999999999988765 8999999999998751 111111 11223
Q ss_pred ecccHHHHHHHHHHhhhcC
Q 043169 310 DFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~ 328 (421)
.+++++|+|++++.++..+
T Consensus 228 ~~~~~~~vA~~i~~~~~~~ 246 (286)
T 1xu9_A 228 QAAPKEECALEIIKGGALR 246 (286)
T ss_dssp GCBCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 5789999999999999865
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-24 Score=194.13 Aligned_cols=209 Identities=19% Similarity=0.181 Sum_probs=136.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHH---Hhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAK---LFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~---~~~~~ 164 (421)
+++|+||||||+||||++++++|++ |++|++++|+.+. ........++.++.+|+++.++... .++..
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~--------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEH--------LAALAEIEGVEPIESDIVKEVLEEGGVDKLKNL 73 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHH--------HHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHH--------HHHHHhhcCCcceecccchHHHHHHHHHHHHhc
Confidence 6789999999999999999999987 9999999984321 1111123578999999998865222 22222
Q ss_pred -CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||...... +.++++..+++|+.|+.++++++. +.+ ++||++||...+. +
T Consensus 74 ~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~~------------~ 139 (245)
T 3e9n_A 74 DHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGNG------------P 139 (245)
T ss_dssp SCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC-------------------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCccccc------------C
Confidence 6899999999864321 344566789999999888888763 333 3999999988764 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
.++...|+.||.+.+.+++.++.+ .|+++++|+||.|.++.... ...... .......++
T Consensus 140 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----------~~~~~~--------~~~~~~~~~ 201 (245)
T 3e9n_A 140 HPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQG----------LMDSQG--------TNFRPEIYI 201 (245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------CCGGGS
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhh----------hhhhhh--------cccccccCC
Confidence 245678999999999999999987 48999999999999873221 111000 011123478
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEec
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLG 340 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~ 340 (421)
+++|+|++++.+++.+ ..+.+|++.
T Consensus 202 ~p~dvA~~i~~l~~~~---~~~~~~~i~ 226 (245)
T 3e9n_A 202 EPKEIANAIRFVIDAG---ETTQITNVD 226 (245)
T ss_dssp CHHHHHHHHHHHHTSC---TTEEEEEEE
T ss_pred CHHHHHHHHHHHHcCC---CccceeeeE
Confidence 9999999999999876 346777765
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-24 Score=195.55 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=153.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHH-Hhhcc-CCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAK-LFDAV-AFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~-~~~~~-~~d~ 168 (421)
|++|||||+|+||++++++|+++|++|++++|+.+..+.... ... ...++.++ |..+.+.+-+ +.+.. ++|+
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~---~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~ 75 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAE---TYPQLKPM--SEQEPAELIEAVTSAYGQVDV 75 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHH---HCTTSEEC--CCCSHHHHHHHHHHHHSCCCE
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHh---cCCcEEEE--CHHHHHHHHHHHHHHhCCCCE
Confidence 689999999999999999999999999999997654322211 111 12334443 5554433222 22222 6899
Q ss_pred EEEccccc-Cc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCC
Q 043169 169 VMHLAAQA-GV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTDQPA 239 (421)
Q Consensus 169 vi~~Ag~~-~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~ 239 (421)
||||||.. .. ..+.++++..+++|+.|+.++++++. +.+. ++||++||...+. ..++.
T Consensus 76 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~------------~~~~~ 142 (254)
T 1zmt_A 76 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS-GHIIFITSATPFG------------PWKEL 142 (254)
T ss_dssp EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCSTTTS------------CCTTC
T ss_pred EEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECCccccc------------CCCCc
Confidence 99999986 32 12334556789999999999888874 3343 4999999987652 22356
Q ss_pred ChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHH------HHHHHHHcCCCeEEEecCCCCcceee
Q 043169 240 SLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYF------SFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
..|+.||.+.+.+++.++.+. ||++++|+||.|+||......... .....+....+ ...
T Consensus 143 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p------------~~~ 210 (254)
T 1zmt_A 143 STYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA------------LQR 210 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS------------SSS
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCC------------CCC
Confidence 789999999999999998874 899999999999887543211111 11111111111 113
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+.+++|+|++++.++........|+.+++.++.
T Consensus 211 ~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 243 (254)
T 1zmt_A 211 LGTQKELGELVAFLASGSCDYLTGQVFWLAGGF 243 (254)
T ss_dssp CBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred CcCHHHHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 678999999999999876555678999998775
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-24 Score=194.98 Aligned_cols=226 Identities=16% Similarity=0.063 Sum_probs=151.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+||||.+++++|+++|++|++++|+.+..+....... ....++.++.+|++|.++++++++.+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQ---SLGGQCVPVVCDSSQESEVRSLFEQVDRE 79 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HHSSEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---HcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999996432221111111 11357889999999999998888653
Q ss_pred ---CCcEEEEccc--cc------Cc---hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCC
Q 043169 165 ---AFTHVMHLAA--QA------GV---RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNEN 226 (421)
Q Consensus 165 ---~~d~vi~~Ag--~~------~~---~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~ 226 (421)
++|+|||||| .. .. ....++++..+++|+.++.++.+++. +.+. ++||++||...+.
T Consensus 80 ~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~---- 154 (260)
T 2qq5_A 80 QQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQ-GLIVVISSPGSLQ---- 154 (260)
T ss_dssp HTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTC-CEEEEECCGGGTS----
T ss_pred cCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCC-cEEEEEcChhhcC----
Confidence 6899999994 32 11 11223345789999999887777663 4443 4999999987752
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCC
Q 043169 227 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 227 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
..+...|+.||.+.+.+++.++.+ +|+++++|+||.|.++-..... .. ............
T Consensus 155 ---------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~--~~~~~~~~~~~~---- 217 (260)
T 2qq5_A 155 ---------YMFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHM--AK--EEVLQDPVLKQF---- 217 (260)
T ss_dssp ---------CCSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC--------------------------
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhh--cc--ccccchhHHHHH----
Confidence 123568999999999999999876 4899999999999887432100 00 000000000000
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCC-CCCceEEEe
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAG-PAPYRIFNL 339 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~~~~i 339 (421)
.....-+..++|+|++++.++..... ...|+.+.+
T Consensus 218 -~~~~~~~~~pe~va~~v~~l~s~~~~~~itG~~i~~ 253 (260)
T 2qq5_A 218 -KSAFSSAETTELSGKCVVALATDPNILSLSGKVLPS 253 (260)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCTTGGGGTTCEEEH
T ss_pred -HhhhccCCCHHHHHHHHHHHhcCcccccccceeech
Confidence 00011246899999999999876521 234555543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-24 Score=200.69 Aligned_cols=221 Identities=15% Similarity=0.068 Sum_probs=153.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH-HHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA-KLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~~- 164 (421)
.+++|+||||||+||||.+++++|+++|++|++++|+.++.+....... .....++.++.+|++|. ++++++++.+
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~ 86 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLK--NSNHENVVFHQLDVTDPIATMSSLADFIK 86 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--TTTCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCCceEEEEccCCCcHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999996543322222211 11235799999999998 8888887754
Q ss_pred ----CCcEEEEcccccCch----------------------------------hhccCCchhhhhhHHHHHHHHHHHHh-
Q 043169 165 ----AFTHVMHLAAQAGVR----------------------------------YAMQNPHSYVHSNIAGLVTLLEACKS- 205 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----------------------------------~~~~~~~~~~~~N~~g~~~l~~~~~~- 205 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++..
T Consensus 87 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 166 (311)
T 3o26_A 87 THFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPL 166 (311)
T ss_dssp HHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHh
Confidence 689999999986421 12233456799999998888888743
Q ss_pred ---cCCCCeEEEEccccccCCCCCC-------------------------------CCCCCCCCCCCCChHHHHHHHHHH
Q 043169 206 ---ANPQPSIVWASSSSVYGLNENV-------------------------------PFSEADRTDQPASLYAATKKAGEE 251 (421)
Q Consensus 206 ---~~~~~riV~~SS~~v~g~~~~~-------------------------------~~~e~~~~~~~~~~Y~~sK~~~e~ 251 (421)
.+ .++||++||...+...... ...+......+...|+.||++.+.
T Consensus 167 l~~~~-~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~ 245 (311)
T 3o26_A 167 LQLSD-SPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNA 245 (311)
T ss_dssp HTTSS-SCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHH
T ss_pred hccCC-CCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHH
Confidence 33 3499999997654221000 000111111345689999999999
Q ss_pred HHHHHHHHh-CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCC
Q 043169 252 IAHTYNHIY-GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 252 ~~~~~~~~~-gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
+++.+++++ ++++++|+||.|.++-... . .....++.++.++.++..+..
T Consensus 246 ~~~~la~e~~~i~v~~v~PG~v~T~~~~~--------------~---------------~~~~~~~~a~~~~~~~~~~~~ 296 (311)
T 3o26_A 246 YTRVLANKIPKFQVNCVCPGLVKTEMNYG--------------I---------------GNYTAEEGAEHVVRIALFPDD 296 (311)
T ss_dssp HHHHHHHHCTTSEEEEECCCSBCSGGGTT--------------C---------------CSBCHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHhhcCCceEEEecCCceecCCcCC--------------C---------------CCCCHHHHHHHHHHHHhCCCC
Confidence 999999985 6999999999998762110 0 124578999999998876643
Q ss_pred CCCceEEEec
Q 043169 331 PAPYRIFNLG 340 (421)
Q Consensus 331 ~~~~~~~~i~ 340 (421)
...+.|...
T Consensus 297 -~~~g~~~~~ 305 (311)
T 3o26_A 297 -GPSGFFYDC 305 (311)
T ss_dssp -CCCSCEETC
T ss_pred -CCCceEecc
Confidence 233344333
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=207.97 Aligned_cols=224 Identities=14% Similarity=0.084 Sum_probs=163.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
+++|++|||||+|+||.++++.|+++|++|++++|+.. ... ........++.++.+|++|.++++++++.+
T Consensus 211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~-----~~~-l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~ 284 (454)
T 3u0b_A 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA-----AED-LKRVADKVGGTALTLDVTADDAVDKITAHVTEH 284 (454)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGG-----HHH-HHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCcc-----HHH-HHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998431 111 111112235679999999999999888764
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcC---CCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSAN---PQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~---~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||+.... .+.++++..+++|+.|+.++.+++.... ..++||++||...+.
T Consensus 285 ~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~------------ 352 (454)
T 3u0b_A 285 HGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIA------------ 352 (454)
T ss_dssp STTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHH------------
T ss_pred cCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCC------------
Confidence 489999999986432 2344566889999999999999987652 134999999976542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
.......|+.+|.+.+.+++.++.+ .||++++|+||.|.++-.... .......... ......+
T Consensus 353 g~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~-----------~~~l~r~ 418 (454)
T 3u0b_A 353 GNRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAI---PLATREVGRR-----------LNSLFQG 418 (454)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC-------------CHHHHH-----------SBTTSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhc---chhhHHHHHh-----------hccccCC
Confidence 1245678999999999999998876 489999999999988632210 0000000000 0011234
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..++|+|++++.++........|+++++.++.
T Consensus 419 g~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 419 GQPVDVAELIAYFASPASNAVTGNTIRVCGQA 450 (454)
T ss_dssp BCHHHHHHHHHHHHCGGGTTCCSCEEEESSSB
T ss_pred CCHHHHHHHHHHHhCCccCCCCCcEEEECCcc
Confidence 67899999999998876667889999998764
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-23 Score=192.74 Aligned_cols=227 Identities=11% Similarity=0.009 Sum_probs=155.7
Q ss_pred CCCCCEEEEEcCC--ChhHHHHHHHHHHCCCcEEEEeCCC-----------CCCChhHHHHHHHhhcCC----ceEEEEc
Q 043169 87 RSGGMSVLVTGAA--GFVGTHVSLALKKRGDGVVGLDNFN-----------NYYDPSLKKARKALLNNH----GVFVIEG 149 (421)
Q Consensus 87 ~~~~k~vlITG~s--G~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~~~~~~~~~~~~~~~~----~v~~~~~ 149 (421)
++++|++|||||+ ||||.+++++|+++|++|++++|+. +..+.. ...... ....+.+
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 78 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQS------RVLPDGSLMEIKKVYPL 78 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGG------GBCTTSSBCCEEEEEEE
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhh------hhhcccccccccccccc
Confidence 4689999999999 9999999999999999999998631 111110 000000 1233333
Q ss_pred c--------cC----C--------HHHHHHHhhcc-----CCcEEEEcccccC----c--hhhccCCchhhhhhHHHHHH
Q 043169 150 D--------IN----D--------AKLLAKLFDAV-----AFTHVMHLAAQAG----V--RYAMQNPHSYVHSNIAGLVT 198 (421)
Q Consensus 150 D--------l~----d--------~~~~~~~~~~~-----~~d~vi~~Ag~~~----~--~~~~~~~~~~~~~N~~g~~~ 198 (421)
| ++ | .++++++++.+ ++|+||||||+.. + ..+.++++..+++|+.|+.+
T Consensus 79 ~~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~ 158 (297)
T 1d7o_A 79 DAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVS 158 (297)
T ss_dssp CTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred ceeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHH
Confidence 3 22 2 34555555443 6899999999642 1 22344566789999999999
Q ss_pred HHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccc
Q 043169 199 LLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTV 272 (421)
Q Consensus 199 l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v 272 (421)
+++++.+... .++||++||...+. ..+.. ..|+.||.+.+.+++.++.+ +||++++|+||.|
T Consensus 159 l~~~~~~~m~~~g~iv~isS~~~~~------------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v 226 (297)
T 1d7o_A 159 LLSHFLPIMNPGGASISLTYIASER------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPL 226 (297)
T ss_dssp HHHHHGGGEEEEEEEEEEECGGGTS------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_pred HHHHHHHHhccCceEEEEecccccc------------CCCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEecccc
Confidence 9999975421 13999999987642 11233 57999999999999988765 5999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 273 YGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 273 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+|..........+...+....+. ..+.+++|+|++++.++........|+++++.++.
T Consensus 227 ~T~~~~~~~~~~~~~~~~~~~~p~------------~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG~ 285 (297)
T 1d7o_A 227 GSRAAKAIGFIDTMIEYSYNNAPI------------QKTLTADEVGNAAAFLVSPLASAITGATIYVDNGL 285 (297)
T ss_dssp BCCCSSCCSHHHHHHHHHHHHSSS------------CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred ccchhhhccccHHHHHHhhccCCC------------CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 998544322223333333322221 12568999999999998765456678999998874
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-23 Score=193.78 Aligned_cols=270 Identities=16% Similarity=0.081 Sum_probs=177.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC-----CChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHh
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY-----YDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
++++|+||||||+||||.++++.|+++|++|++.++.... .............. ... ...+|++|.+++++++
T Consensus 6 ~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~-~~~-~~~~D~~~~~~~~~~~ 83 (319)
T 1gz6_A 6 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR-RGG-KAVANYDSVEAGEKLV 83 (319)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH-TTC-EEEEECCCGGGHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHh-hCC-eEEEeCCCHHHHHHHH
Confidence 4789999999999999999999999999999998764211 11111211111111 111 2358999988777766
Q ss_pred hcc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEcccc-ccCCCCCC
Q 043169 162 DAV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSS-VYGLNENV 227 (421)
Q Consensus 162 ~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~-v~g~~~~~ 227 (421)
+.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. ++||++||.. .++
T Consensus 84 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-grIV~vsS~~~~~~----- 157 (319)
T 1gz6_A 84 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY-GRIIMTASASGIYG----- 157 (319)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHC-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECChhhccC-----
Confidence 543 689999999986532 234456788999999998888887 34443 4999999965 443
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 228 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
..+...|+.||++.+.+++.++.+ +||++++|+||.+ .+-... ..
T Consensus 158 --------~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~--~~--------------------- 205 (319)
T 1gz6_A 158 --------NFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTET--VM--------------------- 205 (319)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGG--GS---------------------
T ss_pred --------CCCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccc--cC---------------------
Confidence 134678999999999999999887 4899999999987 431110 00
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHH
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISS 384 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 384 (421)
......+++++|+|.+++.++..+ ....|++|++.++...... ...... ...+ ......|...
T Consensus 206 ~~~~~~~~~p~dvA~~~~~l~s~~-~~~tG~~~~v~GG~~~~~~---------~~~~~~---~~~~----~~~~~~~~~~ 268 (319)
T 1gz6_A 206 PEDLVEALKPEYVAPLVLWLCHES-CEENGGLFEVGAGWIGKLR---------WERTLG---AIVR----KRNQPMTPEA 268 (319)
T ss_dssp CHHHHHHSCGGGTHHHHHHHTSTT-CCCCSCEEEEETTEEEEEE---------EEECCC---EECC----BTTBCCCHHH
T ss_pred ChhhhccCCHHHHHHHHHHHhCch-hhcCCCEEEECCCeEEEEe---------eeeccc---eecc----CCCCCCCHHH
Confidence 001123567899999999998764 3467899999876421110 000000 0000 0011234443
Q ss_pred HHH-------HcCCCcCCCHHHHHHHHHHHHHHHhC
Q 043169 385 AQK-------EFGYRPTTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 385 a~~-------~lG~~p~~~l~e~l~~~~~~~~~~~~ 413 (421)
+++ ..|+....++.+.++++++..++...
T Consensus 269 ~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (319)
T 1gz6_A 269 VRDNWVKICDFSNASKPKSIQESTGGIIEVLHKIDS 304 (319)
T ss_dssp HHHTHHHHTCCTTCBCCCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhccccccCCCchHHHHHHHHHHHhhccc
Confidence 332 35666556899999999987766554
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=9.6e-23 Score=194.29 Aligned_cols=175 Identities=17% Similarity=0.145 Sum_probs=136.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh---hcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL---LNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++|+||||||+|+||++++++|+++|++|++++|+....+.......... ....++.++.+|++|.++++++++.+
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence 36899999999999999999999999999998886655443332222111 11357899999999999999999875
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+. ++||++||...+.
T Consensus 81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~-g~IV~isS~~~~~------------ 147 (327)
T 1jtv_A 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGS-GRVLVTGSVGGLM------------ 147 (327)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEEGGGTS------------
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEECCccccc------------
Confidence 589999999975321 233456688999999999999986 33443 4999999987652
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPW 276 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~ 276 (421)
.......|+.||.+.+.+++.++.+ +||++++|+||.|.++-
T Consensus 148 ~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 148 GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 1234578999999999999999886 58999999999998874
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=184.76 Aligned_cols=219 Identities=14% Similarity=0.050 Sum_probs=147.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-e--CCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHH-HHHHhhcc-
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGL-D--NFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKL-LAKLFDAV- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-~~~~~~~~- 164 (421)
+|++|||||+|+||+++++.|+++|++|+++ + |+.+. ....... . .+..+. |..+.+. ++++.+..
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~----~~~~~~~-~--~~~~~~--~~~~v~~~~~~~~~~~g 71 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAE----RQRFESE-N--PGTIAL--AEQKPERLVDATLQHGE 71 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHH----HHHHHHH-S--TTEEEC--CCCCGGGHHHHHGGGSS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHH----HHHHHHH-h--CCCccc--CHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999 5 85321 1111111 1 122222 3333222 22333332
Q ss_pred CCcEEEEcccccCc---h----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQAGV---R----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~---~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|+||||||.... . .+.++++..+++|+.|+.++++++. +.+. ++||++||...+.
T Consensus 72 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~----------- 139 (244)
T 1zmo_A 72 AIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGG-ASVIFITSSVGKK----------- 139 (244)
T ss_dssp CEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTS-----------
T ss_pred CCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECChhhCC-----------
Confidence 68999999997643 1 1234456789999999999988874 3442 4999999987753
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC---CCCChHHHHHHHHHc-CCCeEEEecCCCCc
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWG---RPDMAYFSFTRNILQ-GKPITVYRGKNHVD 306 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 306 (421)
+.+....|+.||.+.+.+++.++.+ +||++++|+||.|.++-. .. ..-......+.. ..+
T Consensus 140 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~~~~p----------- 206 (244)
T 1zmo_A 140 -PLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSD-WENNPELRERVDRDVP----------- 206 (244)
T ss_dssp -CCTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHH-HHHCHHHHHHHHHHCT-----------
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccccc-ccchHHHHHHHhcCCC-----------
Confidence 2245678999999999999999877 489999999999987732 10 000011111111 111
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..-+..++|+|++++.++........|+.+.+.++.
T Consensus 207 -~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG~ 242 (244)
T 1zmo_A 207 -LGRLGRPDEMGALITFLASRRAAPIVGQFFAFTGGY 242 (244)
T ss_dssp -TCSCBCHHHHHHHHHHHHTTTTGGGTTCEEEESTTC
T ss_pred -CCCCcCHHHHHHHHHHHcCccccCccCCEEEeCCCC
Confidence 112678999999999999876555678899887763
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=193.79 Aligned_cols=227 Identities=17% Similarity=0.113 Sum_probs=161.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
..+++||||||+|+||.++++.|+++|++ |++++|+....+...+....-.....++.++.+|++|.+++.++++.+
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~ 303 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD 303 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 999999764322221111111122457899999999999999999876
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccc-cCCCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV-YGLNENVPFSEADRTDQ 237 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v-~g~~~~~~~~e~~~~~~ 237 (421)
++|+||||||+.... .+.++.+..+++|+.|+.+|.+++++.+.. +||++||.+. +| ..
T Consensus 304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~-~~V~~SS~a~~~g-------------~~ 369 (486)
T 2fr1_A 304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAFG-------------AP 369 (486)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTC-------------CT
T ss_pred cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCC-EEEEEcChHhcCC-------------CC
Confidence 679999999986431 233445678999999999999999887654 9999999754 43 13
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHH
Q 043169 238 PASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 317 (421)
....|+.+|...+.++++++. .|+++++|+||.+.+++..... . ...+ ...-+.+++++|+
T Consensus 370 g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~~~~---------~----~~~~-----~~~g~~~i~~e~~ 430 (486)
T 2fr1_A 370 GLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEGP---------V----ADRF-----RRHGVIEMPPETA 430 (486)
T ss_dssp TCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-------------------------C-----TTTTEECBCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCcccchh---------H----HHHH-----HhcCCCCCCHHHH
Confidence 457899999999999887765 5999999999999876322110 0 0000 1122467899999
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHH
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILE 355 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~ 355 (421)
++++..++..+.. .+.+. .+.|..+...+.
T Consensus 431 a~~l~~~l~~~~~-----~~~v~---~~d~~~~~~~~~ 460 (486)
T 2fr1_A 431 CRALQNALDRAEV-----CPIVI---DVRWDRFLLAYT 460 (486)
T ss_dssp HHHHHHHHHTTCS-----SCEEC---EECHHHHHHHHT
T ss_pred HHHHHHHHhCCCC-----eEEEE---eCCHHHHhhhhc
Confidence 9999999987621 12232 266777665443
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-22 Score=191.25 Aligned_cols=232 Identities=11% Similarity=-0.064 Sum_probs=156.7
Q ss_pred CCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCC---------CCCChhHHHHHHHhhcCCceEEEEcccCCH--H
Q 043169 89 GGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFN---------NYYDPSLKKARKALLNNHGVFVIEGDINDA--K 155 (421)
Q Consensus 89 ~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~--~ 155 (421)
++|++|||||++ |||.+++++|+++|++|++.+|+. ++.+...............+.++.+|+++. +
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 368999999975 999999999999999999887632 111110000000001123478889999877 6
Q ss_pred ------------------HHHHHhhcc-----CCcEEEEcccccC---c---hhhccCCchhhhhhHHHHHHHHHHHHhc
Q 043169 156 ------------------LLAKLFDAV-----AFTHVMHLAAQAG---V---RYAMQNPHSYVHSNIAGLVTLLEACKSA 206 (421)
Q Consensus 156 ------------------~~~~~~~~~-----~~d~vi~~Ag~~~---~---~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 206 (421)
++.++++.+ ++|+||||||+.. . ..+.++++..+++|+.|+.++++++...
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777777654 6899999999742 1 1234456678999999999999988643
Q ss_pred CC-CCeEEEEccccccCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCCCC
Q 043169 207 NP-QPSIVWASSSSVYGLNENVPFSEADRTDQPAS-LYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVYGPWGRPD 280 (421)
Q Consensus 207 ~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~-~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~G~~~~~~ 280 (421)
-. .++||++||...+. +.+... .|+.||.+.+.+++.++.+ +||++++|+||.|..+-....
T Consensus 161 m~~~g~Iv~isS~~~~~------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~~~~~~ 228 (329)
T 3lt0_A 161 MKPQSSIISLTYHASQK------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAI 228 (329)
T ss_dssp EEEEEEEEEEECGGGTS------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHTC
T ss_pred HhhCCeEEEEeCccccC------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeechhHhhh
Confidence 21 13999999987642 123343 8999999999999988765 489999999999987521100
Q ss_pred C-------------------------------------------hHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHH
Q 043169 281 M-------------------------------------------AYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317 (421)
Q Consensus 281 ~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 317 (421)
. ....+...+....+ ..-+..++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------------~~r~~~peev 296 (329)
T 3lt0_A 229 NKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAP------------LRQKLLSTDI 296 (329)
T ss_dssp C------------------------------------------CHHHHHHHHHHHHSS------------SCSCCCHHHH
T ss_pred hhhcccccccccccccccccccchhhcccccchhhhhhhhcccchhHHHHHHHhhcCc------------ccCcCCHHHH
Confidence 0 00000111111111 1225678999
Q ss_pred HHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 318 VKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 318 a~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
|++++.++........|+.+.+.+|..
T Consensus 297 A~~v~fL~s~~a~~itG~~i~vdGG~~ 323 (329)
T 3lt0_A 297 GSVASFLLSRESRAITGQTIYVDNGLN 323 (329)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHhCchhccccCcEEEEcCCee
Confidence 999999997665678899999988754
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-20 Score=186.66 Aligned_cols=229 Identities=17% Similarity=0.128 Sum_probs=163.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
..+++||||||+|+||.+++++|+++|+ +|++++|+........+....-.....++.++.+|++|.+++.++++..++
T Consensus 257 ~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~l 336 (511)
T 2z5l_A 257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPP 336 (511)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999999999 588889875432222111111111235689999999999999999988667
Q ss_pred cEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhc-CCCCeEEEEcccc-ccCCCCCCCCCCCCCCCCCCC
Q 043169 167 THVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSA-NPQPSIVWASSSS-VYGLNENVPFSEADRTDQPAS 240 (421)
Q Consensus 167 d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~-~~~~riV~~SS~~-v~g~~~~~~~~e~~~~~~~~~ 240 (421)
|+||||||+.... .+.++.+..+++|+.|+.++.+++... +. ++||++||.. ++| .....
T Consensus 337 d~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~-~~~V~~SS~a~~~g-------------~~g~~ 402 (511)
T 2z5l_A 337 NAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGL-DAFVLFSSVTGTWG-------------NAGQG 402 (511)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTC-CCEEEEEEGGGTTC-------------CTTBH
T ss_pred cEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCC-CEEEEEeCHHhcCC-------------CCCCH
Confidence 9999999986532 123345578899999999999998765 44 4999999975 443 13457
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHH
Q 043169 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 320 (421)
.|+.+|...+.++++++. .|+++++|+||.+.+.+.... ... ..+.. .-+..++++|++++
T Consensus 403 ~YaaaKa~ld~la~~~~~-~gi~v~sv~pG~~~~tgm~~~-~~~---~~~~~--------------~g~~~l~~e~~a~~ 463 (511)
T 2z5l_A 403 AYAAANAALDALAERRRA-AGLPATSVAWGLWGGGGMAAG-AGE---ESLSR--------------RGLRAMDPDAAVDA 463 (511)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTCCCEEEEECCBCSTTCCCC-HHH---HHHHH--------------HTBCCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCCcEEEEECCcccCCccccc-ccH---HHHHh--------------cCCCCCCHHHHHHH
Confidence 899999999999988754 599999999998844333222 111 11111 11246889999999
Q ss_pred HHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHH
Q 043169 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERH 357 (421)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~ 357 (421)
+..++..+. ..+.+.. +.|..+...+...
T Consensus 464 l~~al~~~~-----~~v~v~~---~d~~~~~~~~~~~ 492 (511)
T 2z5l_A 464 LLGAMGRND-----VCVTVVD---VDWERFAPATNAI 492 (511)
T ss_dssp HHHHHHHTC-----SEEEECC---BCHHHHHHHHHHH
T ss_pred HHHHHhCCC-----CEEEEEe---CCHHHHHhhhccc
Confidence 999998762 1233332 5677776655443
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-21 Score=182.55 Aligned_cols=233 Identities=16% Similarity=0.016 Sum_probs=151.6
Q ss_pred CCCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCC--ChhHHH---HHHHhhcCC----ceEEEEcc-----
Q 043169 87 RSGGMSVLVTGA--AGFVGTHVSLALKKRGDGVVGLDNFNNYY--DPSLKK---ARKALLNNH----GVFVIEGD----- 150 (421)
Q Consensus 87 ~~~~k~vlITG~--sG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~---~~~~~~~~~----~v~~~~~D----- 150 (421)
++++|++||||| +||||.++++.|+++|++|++++|+.... ...... ......... .+.++.+|
T Consensus 6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (315)
T 2o2s_A 6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK 85 (315)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS
T ss_pred cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccc
Confidence 368999999999 89999999999999999999998732000 000000 000111111 13444444
Q ss_pred -------cCC--------HHHHHHHhhcc-----CCcEEEEcccccC---c---hhhccCCchhhhhhHHHHHHHHHHHH
Q 043169 151 -------IND--------AKLLAKLFDAV-----AFTHVMHLAAQAG---V---RYAMQNPHSYVHSNIAGLVTLLEACK 204 (421)
Q Consensus 151 -------l~d--------~~~~~~~~~~~-----~~d~vi~~Ag~~~---~---~~~~~~~~~~~~~N~~g~~~l~~~~~ 204 (421)
++| .++++++++.+ ++|+||||||... . ..+.++++..+++|+.|+.++++++.
T Consensus 86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 165 (315)
T 2o2s_A 86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFG 165 (315)
T ss_dssp TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 332 34555555543 6899999999652 1 12334566889999999999999986
Q ss_pred hcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCC
Q 043169 205 SANP-QPSIVWASSSSVYGLNENVPFSEADRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 205 ~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~G~~~~ 278 (421)
+.-. .++||++||...+. ..+.. ..|+.||.+.+.+++.++.+ +||++++|+||.|.++-..
T Consensus 166 ~~m~~~g~Iv~isS~~~~~------------~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~ 233 (315)
T 2o2s_A 166 PIMNEGGSAVTLSYLAAER------------VVPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAAS 233 (315)
T ss_dssp TTEEEEEEEEEEEEGGGTS------------CCTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHHH
T ss_pred HHHhcCCEEEEEecccccc------------cCCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhhh
Confidence 5411 13999999987642 11223 47999999999999988765 4899999999999775100
Q ss_pred ------CCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 279 ------PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 279 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.......+...+....+ ..-+..++|+|++++.++........|+.+.+.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~p------------~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 292 (315)
T 2o2s_A 234 AIGKSGEKSFIDYAIDYSYNNAP------------LRRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNGL 292 (315)
T ss_dssp HTTCSSSSCHHHHHHHHHHHHSS------------SCCCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred hccccccchhHHHHHHHHhccCC------------CCCCCCHHHHHHHHHHHhCchhccCcCCEEEECCCe
Confidence 00011111111111111 112567899999999999865556789999998764
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=183.84 Aligned_cols=238 Identities=13% Similarity=-0.012 Sum_probs=135.7
Q ss_pred CCCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCC-----------CCCChhHHH------HHHHhhcCC-----
Q 043169 87 RSGGMSVLVTGA--AGFVGTHVSLALKKRGDGVVGLDNFN-----------NYYDPSLKK------ARKALLNNH----- 142 (421)
Q Consensus 87 ~~~~k~vlITG~--sG~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~~~~~~~------~~~~~~~~~----- 142 (421)
++++|++||||| +|+||.++++.|+++|++|++++|+. +..+..... .........
T Consensus 6 ~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (319)
T 2ptg_A 6 DLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV 85 (319)
T ss_dssp CCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------C
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence 367899999999 89999999999999999999998741 111110000 000000000
Q ss_pred ceEEEEcc------------cCC--------HHHHHHHhhcc-----CCcEEEEcccccC---c---hhhccCCchhhhh
Q 043169 143 GVFVIEGD------------IND--------AKLLAKLFDAV-----AFTHVMHLAAQAG---V---RYAMQNPHSYVHS 191 (421)
Q Consensus 143 ~v~~~~~D------------l~d--------~~~~~~~~~~~-----~~d~vi~~Ag~~~---~---~~~~~~~~~~~~~ 191 (421)
...++.+| ++| .++++++++.+ ++|+||||||... . ..+.++++..+++
T Consensus 86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~v 165 (319)
T 2ptg_A 86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSS 165 (319)
T ss_dssp CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHH
T ss_pred ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhH
Confidence 13444443 333 23555555543 6899999999642 1 1233456678999
Q ss_pred hHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEE
Q 043169 192 NIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLSIT 265 (421)
Q Consensus 192 N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~gi~~~ 265 (421)
|+.|+.++++++.+.-. .++||++||...+. ..+.. ..|+.||.+.+.+++.++.+ +||+++
T Consensus 166 N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~------------~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn 233 (319)
T 2ptg_A 166 SSYSFVSLLQHFLPLMKEGGSALALSYIASEK------------VIPGYGGGMSSAKAALESDCRTLAFEAGRARAVRVN 233 (319)
T ss_dssp HTHHHHHHHHHHGGGEEEEEEEEEEEECC------------------------------THHHHHHHHHHHHHHHCCEEE
T ss_pred hhHHHHHHHHHHHHHHhcCceEEEEecccccc------------ccCccchhhHHHHHHHHHHHHHHHHHhccccCeeEE
Confidence 99999999999875411 13999999987542 11223 57999999999999988765 589999
Q ss_pred EEEeccccCCCCCCCCh--HHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 266 GLRFFTVYGPWGRPDMA--YFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 266 ~vrp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+|+||.|.++-...... ...+...... .+. ......-+..++|+|++++.++........|+++.+.++.
T Consensus 234 ~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~~---~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG~ 305 (319)
T 2ptg_A 234 CISAGPLKSRAASAIGKAGDKTFIDLAID-----YSE---ANAPLQKELESDDVGRAALFLLSPLARAVTGATLYVDNGL 305 (319)
T ss_dssp EEEECCCC---------------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred EEeeCCccChhhhhcccccchhhHHHHHH-----HHh---ccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 99999998763211000 0000000000 000 0001123668999999999999875556789999998775
Q ss_pred c
Q 043169 344 P 344 (421)
Q Consensus 344 ~ 344 (421)
.
T Consensus 306 ~ 306 (319)
T 2ptg_A 306 H 306 (319)
T ss_dssp T
T ss_pred e
Confidence 3
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=200.31 Aligned_cols=218 Identities=17% Similarity=0.017 Sum_probs=147.5
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC-----CChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY-----YDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL 160 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~ 160 (421)
.+++||++|||||+|+||+++++.|+++|++|++++|.... ............ ...... ..+|++|.++++++
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i-~~~~~~-~~~D~~d~~~~~~~ 92 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEI-RKAGGE-AVADYNSVIDGAKV 92 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHH-HHTTCC-EEECCCCGGGHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHH-HHhCCe-EEEEeCCHHHHHHH
Confidence 45789999999999999999999999999999999882211 011111111111 111112 34799999888888
Q ss_pred hhcc-----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCC
Q 043169 161 FDAV-----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENV 227 (421)
Q Consensus 161 ~~~~-----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~ 227 (421)
++.+ ++|+||||||+... ..+.++++..+++|+.|+.++++++ ++.+. ++||++||.+.+.
T Consensus 93 ~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~-g~IV~isS~a~~~----- 166 (613)
T 3oml_A 93 IETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNY-GRIIMTSSNSGIY----- 166 (613)
T ss_dssp HC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCHHHHH-----
T ss_pred HHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEECCHHHcC-----
Confidence 8764 68999999998643 2244556789999999999999987 44442 4999999976431
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 228 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
.......|+.||.+.+.+++.++.+. ||++++|.||.+- +-. .+. .
T Consensus 167 -------~~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~--------------~~~---------~ 215 (613)
T 3oml_A 167 -------GNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMT--------------EGI---------L 215 (613)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------CCC---------C
T ss_pred -------CCCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhh--------------hhc---------c
Confidence 12356789999999999999999874 8999999998642 100 000 0
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.......+.++|+|.+++.++... ....|+++++.+|.
T Consensus 216 ~~~~~~~~~pedvA~~v~~L~s~~-~~~tG~~i~vdGG~ 253 (613)
T 3oml_A 216 PDILFNELKPKLIAPVVAYLCHES-CEDNGSYIESAAGW 253 (613)
T ss_dssp CHHHHTTCCGGGTHHHHHHTTSTT-CCCCSCEEEEETTE
T ss_pred chhhhhcCCHHHHHHHHHHhcCCC-cCCCceEEEECCCe
Confidence 011223457899999999998876 56788999988763
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=186.36 Aligned_cols=208 Identities=18% Similarity=0.113 Sum_probs=153.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
++++|||||+|+||.++++.|+++|+ +|+++.|+....+...+....-.....++.++.+|++|.+++.++++.+
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 48999999999999999999999998 7888888653333222222221223467999999999999999999875
Q ss_pred CCcEEEEccccc-Cc----hhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCC
Q 043169 165 AFTHVMHLAAQA-GV----RYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPA 239 (421)
Q Consensus 165 ~~d~vi~~Ag~~-~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~ 239 (421)
++|+||||||+. .. ..+.++.+..+++|+.|+.++.+++.+.+.. +||++||...+- .....
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~-~iV~~SS~a~~~------------g~~g~ 385 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLD-AFVLFSSGAAVW------------GSGGQ 385 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCS-EEEEEEEHHHHT------------TCTTC
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEeChHhcC------------CCCCc
Confidence 589999999986 22 1233445678999999999999999888754 999999976431 12456
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHH
Q 043169 240 SLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK 319 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 319 (421)
..|+.+|...+.++++++. .|+++++|.||.+.+++..... .....+.+.. ...+..++.++
T Consensus 386 ~~YaAaKa~ldala~~~~~-~Gi~v~sV~pG~w~~~gm~~~~---~~~~~l~~~g--------------~~~l~pe~~~~ 447 (496)
T 3mje_A 386 PGYAAANAYLDALAEHRRS-LGLTASSVAWGTWGEVGMATDP---EVHDRLVRQG--------------VLAMEPEHALG 447 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCCCEEEEECEESSSCC---------CHHHHHTT--------------EEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCeEEEEECCcccCCccccCh---HHHHHHHhcC--------------CCCCCHHHHHH
Confidence 7899999999999988765 5999999999998876543211 1111121211 12356799999
Q ss_pred HHHHhhhcC
Q 043169 320 GCLGSLDTS 328 (421)
Q Consensus 320 a~~~~l~~~ 328 (421)
++..++..+
T Consensus 448 ~l~~~l~~~ 456 (496)
T 3mje_A 448 ALDQMLEND 456 (496)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHcCC
Confidence 999999876
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=185.16 Aligned_cols=213 Identities=14% Similarity=0.099 Sum_probs=149.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEccc-CCHHH-HHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI-NDAKL-LAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl-~d~~~-~~~~~~~~ 164 (421)
++++|+++||||+++||.++++.|+++|++|++.++.. .+....+... ....+..+.+|+ .+.+. ++++.+.+
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~---~g~~~~~~~~Dv~~~~~~~~~~~~~~~ 393 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKA---AGGEAWPDQHDVAKDSEAIIKNVIDKY 393 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHH---TTCEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHh---cCCeEEEEEcChHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999988622 2222222211 234567788899 55543 23333333
Q ss_pred -CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||+... ..+.++++..+++|+.|+.++.+++. +.+ .++||++||.+.+- .
T Consensus 394 G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~ag~~------------~ 460 (604)
T 2et6_A 394 GTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQ-FGRIINITSTSGIY------------G 460 (604)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCHHHHS------------C
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhcc------------C
Confidence 68999999998643 22345567899999999888888763 333 34999999976431 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
......|+.||.+...+++.++.+ +||++++|.||. ..+ ... . ..... .....
T Consensus 461 ~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~-m~~-----~----~~~~~-------------~~~~~ 516 (604)
T 2et6_A 461 NFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETA-MTL-----S----IMREQ-------------DKNLY 516 (604)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCC-C-------------------------------CCSS
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCc-ccc-----c----cCchh-------------hccCC
Confidence 234578999999999999999887 489999999983 322 100 0 00000 01235
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.++|+|.+++.++..... ..|+++.+.++
T Consensus 517 ~pe~vA~~v~~L~s~~~~-itG~~~~vdGG 545 (604)
T 2et6_A 517 HADQVAPLLVYLGTDDVP-VTGETFEIGGG 545 (604)
T ss_dssp CGGGTHHHHHHTTSTTCC-CCSCEEEEETT
T ss_pred CHHHHHHHHHHHhCCccC-CCCcEEEECCC
Confidence 789999999999887655 78899998876
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-20 Score=184.92 Aligned_cols=229 Identities=16% Similarity=0.093 Sum_probs=157.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEE-eCCCCC----------CChhHHHHHHHhhcCCceEEEEcccCCHH
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGL-DNFNNY----------YDPSLKKARKALLNNHGVFVIEGDINDAK 155 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~-~r~~~~----------~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~ 155 (421)
..++++|||||+|+||.++++.|+++|++ |+++ +|+... .+...+....-.....++.++.+|++|.+
T Consensus 249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~ 328 (525)
T 3qp9_A 249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE 328 (525)
T ss_dssp CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence 46899999999999999999999999998 5555 676422 11111111111122467999999999999
Q ss_pred HHHHHhhcc----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhcCC----CCeEEEEccccccCC
Q 043169 156 LLAKLFDAV----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSANP----QPSIVWASSSSVYGL 223 (421)
Q Consensus 156 ~~~~~~~~~----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~----~~riV~~SS~~v~g~ 223 (421)
++.++++.+ ++|+||||||+... ..+.++.+..+++|+.|+.+|.+++..... .++||++||.+.+-
T Consensus 329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~- 407 (525)
T 3qp9_A 329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIW- 407 (525)
T ss_dssp HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTT-
T ss_pred HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcC-
Confidence 999999875 68999999998643 223344567899999999999999976551 24999999977542
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCC
Q 043169 224 NENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 224 ~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
.......|+.+|...+.++++++. .|+++++|+||.+-++ ...+.... ..+....
T Consensus 408 -----------g~~g~~~YaaaKa~l~~lA~~~~~-~gi~v~sI~pG~~~tg-m~~~~~~~---~~~~~~g--------- 462 (525)
T 3qp9_A 408 -----------GGAGQGAYAAGTAFLDALAGQHRA-DGPTVTSVAWSPWEGS-RVTEGATG---ERLRRLG--------- 462 (525)
T ss_dssp -----------CCTTCHHHHHHHHHHHHHHTSCCS-SCCEEEEEEECCBTTS-GGGSSHHH---HHHHHTT---------
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHh-CCCCEEEEECCccccc-cccchhhH---HHHHhcC---------
Confidence 123567899999999998876654 4999999999999332 21111111 1111111
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHH
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILE 355 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~ 355 (421)
...+..+++++++..++..+.. . ..+. .+.|..+...+.
T Consensus 463 -----~~~l~pee~a~~l~~~l~~~~~----~-v~v~---~~dw~~~~~~~~ 501 (525)
T 3qp9_A 463 -----LRPLAPATALTALDTALGHGDT----A-VTIA---DVDWSSFAPGFT 501 (525)
T ss_dssp -----BCCBCHHHHHHHHHHHHHHTCS----E-EEEC---CBCHHHHHHHHH
T ss_pred -----CCCCCHHHHHHHHHHHHhCCCC----e-EEEE---eCCHHHHHhhcc
Confidence 1346789999999999987621 2 2222 256666655544
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=185.13 Aligned_cols=232 Identities=16% Similarity=0.117 Sum_probs=155.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC-----ChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHH
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY-----DPSLKKARKALL-NNHGVFVIEGDINDAKLLAKL 160 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~-----~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~ 160 (421)
++++|+++||||+++||+++++.|+++|++|++.+|+.... ....+....... ....+ .+|++|.++++++
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~---~~d~~d~~~~~~~ 81 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA---VADYNNVLDGDKI 81 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEE---EEECCCTTCHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeE---EEEcCCHHHHHHH
Confidence 36899999999999999999999999999999998854110 011111111111 11222 2466665444444
Q ss_pred hh----cc-CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCC
Q 043169 161 FD----AV-AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENV 227 (421)
Q Consensus 161 ~~----~~-~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~ 227 (421)
++ .+ ++|+||||||+... ..+.++++..+++|+.|+.++.+++. +.+ .++||++||....-
T Consensus 82 v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~-~G~IVnisS~ag~~----- 155 (604)
T 2et6_A 82 VETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQK-YGRIVNTSSPAGLY----- 155 (604)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECCHHHcC-----
Confidence 33 32 68999999998542 23445567899999999888888763 333 24999999976431
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 228 PFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 228 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
.......|+.||.+...+++.++.+ +||+|++|.|| +..+ +.... .+
T Consensus 156 -------~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~----------m~~~~---~~--------- 205 (604)
T 2et6_A 156 -------GNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSR----------MTESI---MP--------- 205 (604)
T ss_dssp -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCH----------HHHTT---SC---------
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCc----------ccccc---CC---------
Confidence 1134568999999999999999987 48999999996 2211 11100 00
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC------------------CccCHHHHHHHHHHHhC
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT------------------SPVTVPKLVNILERHLK 359 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~------------------~~~t~~el~~~l~~~~g 359 (421)
........++|+|.+++.++... ....|+++.+.++ ...+..++.+.+.+...
T Consensus 206 -~~~~~~~~pe~vA~~v~~L~s~~-~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 276 (604)
T 2et6_A 206 -PPMLEKLGPEKVAPLVLYLSSAE-NELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEILD 276 (604)
T ss_dssp -HHHHTTCSHHHHHHHHHHHTSSS-CCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHTC
T ss_pred -hhhhccCCHHHHHHHHHHHhCCc-ccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhhc
Confidence 00112357899999999998876 5677888887664 23567888887776653
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-19 Score=169.24 Aligned_cols=215 Identities=13% Similarity=-0.031 Sum_probs=143.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCCCChhH--------HHH-HHHhhcCCceEEEEcccCCHHHH
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKK-RGDGVVGLDNFNNYYDPSL--------KKA-RKALLNNHGVFVIEGDINDAKLL 157 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~--------~~~-~~~~~~~~~v~~~~~Dl~d~~~~ 157 (421)
..+|++|||||+++||.++++.|++ +|++|++++|+.+..+... ... .........+..+.+|++|.+++
T Consensus 59 ~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 59 DGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 3589999999999999999999999 9999999999876654320 000 11111235688899999999998
Q ss_pred HHHhhcc------CCcEEEEccccc-------------C--c-----------------------hhhccCCchhhhhhH
Q 043169 158 AKLFDAV------AFTHVMHLAAQA-------------G--V-----------------------RYAMQNPHSYVHSNI 193 (421)
Q Consensus 158 ~~~~~~~------~~d~vi~~Ag~~-------------~--~-----------------------~~~~~~~~~~~~~N~ 193 (421)
+++++.+ ++|+||||||.. . + +.+.++++..+++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 8777542 589999999862 0 0 012233445677776
Q ss_pred HHHH-HHHHHHHhcCC---CCeEEEEccccccCCCCCCCCCCCCCCCCC--CChHHHHHHHHHHHHHHHHHH---hCCcE
Q 043169 194 AGLV-TLLEACKSANP---QPSIVWASSSSVYGLNENVPFSEADRTDQP--ASLYAATKKAGEEIAHTYNHI---YGLSI 264 (421)
Q Consensus 194 ~g~~-~l~~~~~~~~~---~~riV~~SS~~v~g~~~~~~~~e~~~~~~~--~~~Y~~sK~~~e~~~~~~~~~---~gi~~ 264 (421)
.+.. .+++++..... .++||++||.+..- ..+. ...|+.||.+.+.+++.++.+ +||++
T Consensus 219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~------------~~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRV 286 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEI------------TWPIYWHGALGKAKVDLDRTAQRLNARLAKHGGGA 286 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGG------------GHHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhc------------cCCCccchHHHHHHHHHHHHHHHHHHHhCccCEEE
Confidence 6664 66666543221 13899999976431 1112 268999999999999999987 48999
Q ss_pred EEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 265 TGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 265 ~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
++|.||.|-.+-...-...+.....+.+ +.. -.-..+||++++..++...
T Consensus 287 NaVaPG~i~T~~~~~ip~~~~~~~~~~~--~m~------------r~G~pEdva~~v~~L~sd~ 336 (422)
T 3s8m_A 287 NVAVLKSVVTQASAAIPVMPLYISMVYK--IMK------------EKGLHEGTIEQLDRLFRER 336 (422)
T ss_dssp EEEEECCCCCTTGGGSTHHHHHHHHHHH--HHH------------HTTCCCCHHHHHHHHHHHT
T ss_pred EEEEcCCCcChhhhcCCCChHHHHHHHh--hhc------------CCcChHHHHHHHHHHhcch
Confidence 9999999988743221112211111110 000 0112389999999988754
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=165.80 Aligned_cols=176 Identities=15% Similarity=-0.018 Sum_probs=129.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCCCChh--------HHHHH-HHhhcCCceEEEEcccCCHHHH
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKK-RGDGVVGLDNFNNYYDPS--------LKKAR-KALLNNHGVFVIEGDINDAKLL 157 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~--------~~~~~-~~~~~~~~v~~~~~Dl~d~~~~ 157 (421)
..+|++|||||+++||.++++.|++ +|++|++++|+.+..+.. ..... ........+..+.+|++|.+++
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v 124 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK 124 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 5789999999999999999999999 999999999877654321 01111 1111235688899999999999
Q ss_pred HHHhhcc-----CCcEEEEcccccC--------------------------------------chhhccCCchhhhhhHH
Q 043169 158 AKLFDAV-----AFTHVMHLAAQAG--------------------------------------VRYAMQNPHSYVHSNIA 194 (421)
Q Consensus 158 ~~~~~~~-----~~d~vi~~Ag~~~--------------------------------------~~~~~~~~~~~~~~N~~ 194 (421)
+++++.+ ++|+||||||... .+.+.++++.++++|..
T Consensus 125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~ 204 (405)
T 3zu3_A 125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG 204 (405)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence 8888765 6899999999731 01123345567888887
Q ss_pred HHH-HHHHHHHhcCC---CCeEEEEccccccCCCCCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHHHHHH---h-CCcE
Q 043169 195 GLV-TLLEACKSANP---QPSIVWASSSSVYGLNENVPFSEADRTDQPA--SLYAATKKAGEEIAHTYNHI---Y-GLSI 264 (421)
Q Consensus 195 g~~-~l~~~~~~~~~---~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~--~~Y~~sK~~~e~~~~~~~~~---~-gi~~ 264 (421)
+.. .+++++..... .++||++||....- ..+.. ..|+.||.+.+.+++.++.+ + ||++
T Consensus 205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~------------~~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRV 272 (405)
T 3zu3_A 205 EDWQMWIDALLDAGVLAEGAQTTAFTYLGEKI------------THDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDA 272 (405)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEEEECCCCGG------------GTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEE
T ss_pred hHHHHHHHHHHHHhhhhCCcEEEEEeCchhhC------------cCCCccchHHHHHHHHHHHHHHHHHHHhCcccCeEE
Confidence 765 55665432211 13899999976431 11233 78999999999999999877 5 8999
Q ss_pred EEEEeccccCC
Q 043169 265 TGLRFFTVYGP 275 (421)
Q Consensus 265 ~~vrp~~v~G~ 275 (421)
++|.||.|-.+
T Consensus 273 NaVaPG~i~T~ 283 (405)
T 3zu3_A 273 RVSVLKAVVSQ 283 (405)
T ss_dssp EEEECCCCCCH
T ss_pred EEEEeCCCcCc
Confidence 99999999876
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=189.28 Aligned_cols=226 Identities=15% Similarity=0.081 Sum_probs=153.1
Q ss_pred cccCCCCCEEEEEcCCCh-hHHHHHHHHHHCCCcEEEEe-CCCCCCChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHH
Q 043169 84 QIHRSGGMSVLVTGAAGF-VGTHVSLALKKRGDGVVGLD-NFNNYYDPSLKKARKALL-NNHGVFVIEGDINDAKLLAKL 160 (421)
Q Consensus 84 ~~~~~~~k~vlITG~sG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~ 160 (421)
..+++++|++|||||+|+ ||.++++.|+++|++|++++ |+.+..+........... ...++.++.+|++|.++++++
T Consensus 669 ~~m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~al 748 (1887)
T 2uv8_A 669 NGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEAL 748 (1887)
T ss_dssp TCBCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHH
T ss_pred ccCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHH
Confidence 334578999999999998 99999999999999999984 543222221122211111 135688999999999999988
Q ss_pred hhcc-----------CCcEEEEcccccCch--h---h--ccCCchhhhhhHHHHHHHHHHHHhcCC-----CCeEEEEcc
Q 043169 161 FDAV-----------AFTHVMHLAAQAGVR--Y---A--MQNPHSYVHSNIAGLVTLLEACKSANP-----QPSIVWASS 217 (421)
Q Consensus 161 ~~~~-----------~~d~vi~~Ag~~~~~--~---~--~~~~~~~~~~N~~g~~~l~~~~~~~~~-----~~riV~~SS 217 (421)
++.+ ++|+||||||+.... . . .++++..+++|+.|+.+++++++.... .++||++||
T Consensus 749 v~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS 828 (1887)
T 2uv8_A 749 IEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSP 828 (1887)
T ss_dssp HHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECS
T ss_pred HHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcC
Confidence 8642 489999999986432 1 1 234568899999999999998743211 138999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHHHhC--CcEEEEEeccccCCCC-CCCChHHHHHHHHHcC
Q 043169 218 SSVYGLNENVPFSEADRTDQPASLYAATKKAGEEI-AHTYNHIYG--LSITGLRFFTVYGPWG-RPDMAYFSFTRNILQG 293 (421)
Q Consensus 218 ~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~g--i~~~~vrp~~v~G~~~-~~~~~~~~~~~~~~~~ 293 (421)
...+. .....|+.||.+.+.+ .+.++.+.+ |++++|+||+|.|... ........ ....
T Consensus 829 ~ag~~--------------gg~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~~~----~~~~ 890 (1887)
T 2uv8_A 829 NHGTF--------------GGDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAE----GIEK 890 (1887)
T ss_dssp CTTCS--------------SCBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CCTTHH----HHHT
T ss_pred hHhcc--------------CCCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccchhHHH----HHHh
Confidence 76531 1346799999999998 676666543 9999999999984221 11111111 1111
Q ss_pred CCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC-CCCCCceEEEec
Q 043169 294 KPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS-AGPAPYRIFNLG 340 (421)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~i~ 340 (421)
.+. -+..++|+|.+++.++... .....|..+.+.
T Consensus 891 ~pl-------------r~~sPEEVA~avlfLaSd~~as~iTGq~I~VD 925 (1887)
T 2uv8_A 891 MGV-------------RTFSQKEMAFNLLGLLTPEVVELCQKSPVMAD 925 (1887)
T ss_dssp TSC-------------CCEEHHHHHHHHHGGGSHHHHHHHHHSCEEEE
T ss_pred cCC-------------CCCCHHHHHHHHHHHhCCCccccccCcEEEEE
Confidence 111 1347899999999988654 122346667663
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=160.49 Aligned_cols=177 Identities=13% Similarity=-0.050 Sum_probs=127.0
Q ss_pred CCCCCEEEEEcCCChhHHH--HHHHHHHCCCcEEEEeCCCCCCChh--------HHHHH-HHhhcCCceEEEEcccCCHH
Q 043169 87 RSGGMSVLVTGAAGFVGTH--VSLALKKRGDGVVGLDNFNNYYDPS--------LKKAR-KALLNNHGVFVIEGDINDAK 155 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~~~--------~~~~~-~~~~~~~~v~~~~~Dl~d~~ 155 (421)
...+|++|||||+++||.+ +++.|+++|++|++++|+....... ..... ........+.++.+|++|.+
T Consensus 57 ~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~ 136 (418)
T 4eue_A 57 FRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE 136 (418)
T ss_dssp CCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 3689999999999999999 9999999999999999977654321 11111 11123456889999999999
Q ss_pred HHHHHhhcc-----CCcEEEEcccccC---------------c-----------------------hhhccCCchhhhhh
Q 043169 156 LLAKLFDAV-----AFTHVMHLAAQAG---------------V-----------------------RYAMQNPHSYVHSN 192 (421)
Q Consensus 156 ~~~~~~~~~-----~~d~vi~~Ag~~~---------------~-----------------------~~~~~~~~~~~~~N 192 (421)
+++++++.+ ++|+||||||... + +.+.++....+++|
T Consensus 137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn 216 (418)
T 4eue_A 137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM 216 (418)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence 999888765 6899999999730 0 01222333456666
Q ss_pred HHHHH-HHHHHHHhcCC---CCeEEEEccccccCCCCCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHHHHHH----hCC
Q 043169 193 IAGLV-TLLEACKSANP---QPSIVWASSSSVYGLNENVPFSEADRTDQPA--SLYAATKKAGEEIAHTYNHI----YGL 262 (421)
Q Consensus 193 ~~g~~-~l~~~~~~~~~---~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~--~~Y~~sK~~~e~~~~~~~~~----~gi 262 (421)
..+.. .+++++...+. ..+||++||.+..- +.+.. ..|+.||.+.+.+++.++.+ +||
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~------------~~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GI 284 (418)
T 4eue_A 217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPR------------TYKIYREGTIGIAKKDLEDKAKLINEKLNRVIGG 284 (418)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGG------------GTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcC------------CCCccccHHHHHHHHHHHHHHHHHHHHhCCccCe
Confidence 66554 55555543221 13899999976421 12334 88999999999999988865 589
Q ss_pred cEEEEEeccccCC
Q 043169 263 SITGLRFFTVYGP 275 (421)
Q Consensus 263 ~~~~vrp~~v~G~ 275 (421)
++++|.||.|-.+
T Consensus 285 rVN~V~PG~v~T~ 297 (418)
T 4eue_A 285 RAFVSVNKALVTK 297 (418)
T ss_dssp EEEEEECCCCCCH
T ss_pred EEEEEECCcCcCh
Confidence 9999999999875
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-19 Score=169.10 Aligned_cols=177 Identities=12% Similarity=0.085 Sum_probs=127.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHh
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-------GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
+.|+|+||||+||||++++..|+++|+ +|+++++... ...............+.++ .|+.+.+.+.+++
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~---~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~a~ 78 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA---MKALEGVVMELEDCAFPLL-AGLEATDDPKVAF 78 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG---HHHHHHHHHHHHTTTCTTE-EEEEEESCHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCc---hhhccchhhhhhccccccc-CCeEeccChHHHh
Confidence 457899999999999999999999996 8999987421 0000111111122222233 5777666677788
Q ss_pred hccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEcccc-ccCCCCCCCCC-CCCCCCCC
Q 043169 162 DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSS-VYGLNENVPFS-EADRTDQP 238 (421)
Q Consensus 162 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~-v~g~~~~~~~~-e~~~~~~~ 238 (421)
+++ |+|||+||....+ ..++...+++|+.++.++++++++.+ +..++|++|+.. +.. +.. +.....+|
T Consensus 79 ~~~--D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~~~~~~p 149 (327)
T 1y7t_A 79 KDA--DYALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKNAPGLNP 149 (327)
T ss_dssp TTC--SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHTCTTSCG
T ss_pred CCC--CEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHHcCCCCh
Confidence 776 9999999986432 24556789999999999999999986 555888888743 110 011 11111245
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
...|+.+|+.+|++...+++.+|++++++||++||||+..
T Consensus 150 ~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 150 RNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred hheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 6779999999999999999889999999999999998653
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-18 Score=177.06 Aligned_cols=172 Identities=22% Similarity=0.208 Sum_probs=135.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHH-HCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALK-KRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~-~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
..++++|||||+|+||.++++.|+ ++|++ |++++|+....+...+....-.....++.++.+|++|.++++++++.+
T Consensus 528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~ 607 (795)
T 3slk_A 528 DAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIP 607 (795)
T ss_dssp CTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred ccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 468999999999999999999999 79985 899999754443333222222223467999999999999999999876
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
++|+||||||+... ..+.++++..+++|+.|+.++.+++.... +||++||.+.+- ...
T Consensus 608 ~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l---~iV~~SS~ag~~------------g~~ 672 (795)
T 3slk_A 608 DEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV---ALVLFSSVSGVL------------GSG 672 (795)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS---EEEEEEETHHHH------------TCS
T ss_pred HhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC---EEEEEccHHhcC------------CCC
Confidence 68999999998643 23445667899999999999999984332 899999976431 124
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCC
Q 043169 238 PASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGP 275 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~ 275 (421)
....|+.+|...+.++++++. .|+++++|.||.+-++
T Consensus 673 g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~ 709 (795)
T 3slk_A 673 GQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEH 709 (795)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcc
Confidence 567899999988888888766 5999999999988765
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=182.72 Aligned_cols=238 Identities=14% Similarity=0.053 Sum_probs=157.4
Q ss_pred ccCCCCCEEEEEcCCCh-hHHHHHHHHHHCCCcEEEEeCCC-CCCChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHHh
Q 043169 85 IHRSGGMSVLVTGAAGF-VGTHVSLALKKRGDGVVGLDNFN-NYYDPSLKKARKALL-NNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~-iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
.+++++|+||||||+|+ ||.++++.|+++|++|++++++. +..+........... ...++.++.+|++|.+++.+++
T Consensus 647 ~m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv 726 (1878)
T 2uv9_A 647 GLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALV 726 (1878)
T ss_dssp CBCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence 34578999999999999 99999999999999999986432 211111111111111 1356889999999999999888
Q ss_pred hcc---------CCcEEEEcccccCch-h----h--ccCCchhhhhhHHHHHHHHHHHH--hcC---CCCeEEEEccccc
Q 043169 162 DAV---------AFTHVMHLAAQAGVR-Y----A--MQNPHSYVHSNIAGLVTLLEACK--SAN---PQPSIVWASSSSV 220 (421)
Q Consensus 162 ~~~---------~~d~vi~~Ag~~~~~-~----~--~~~~~~~~~~N~~g~~~l~~~~~--~~~---~~~riV~~SS~~v 220 (421)
+.+ ++|+||||||+.... . + .++++.++++|+.|+.+++++++ ... ..++||++||...
T Consensus 727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag 806 (1878)
T 2uv9_A 727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHG 806 (1878)
T ss_dssp HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSS
T ss_pred HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhh
Confidence 642 589999999986432 1 1 23456889999999998887742 221 1138999999765
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-h--CCcEEEEEecccc-CCCCCCCChHHHHHHHHHcCCCe
Q 043169 221 YGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI-Y--GLSITGLRFFTVY-GPWGRPDMAYFSFTRNILQGKPI 296 (421)
Q Consensus 221 ~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~--gi~~~~vrp~~v~-G~~~~~~~~~~~~~~~~~~~~~~ 296 (421)
+. .....|+.||.+.+.+++.+..+ . +|++++|.||.+. ++-... ...........+.
T Consensus 807 ~~--------------gg~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~----~~~~~~~~~~~pl 868 (1878)
T 2uv9_A 807 TF--------------GNDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA----NNLVAEGVEKLGV 868 (1878)
T ss_dssp SS--------------SCCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH----HHHTHHHHHTTTC
T ss_pred cc--------------CCchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc----chhhHHHHHhcCC
Confidence 31 12467999999999998876544 2 3999999999998 442211 1111122222111
Q ss_pred EEEecCCCCcceeecccHHHHHHHHHHhhhcCC-CCCCceEEEec--CCCc--cCHHHHHHH
Q 043169 297 TVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA-GPAPYRIFNLG--NTSP--VTVPKLVNI 353 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~-~~~~~~~~~i~--~~~~--~t~~el~~~ 353 (421)
-+..++|+|.+++.++.... ....|..+.+. +|.. ..+.++...
T Consensus 869 -------------r~~sPeEVA~avlfLaSd~a~s~iTGq~I~VDVDGG~~~~~~l~el~~~ 917 (1878)
T 2uv9_A 869 -------------RTFSQQEMAFNLLGLMAPAIVNLCQSDPVFADLNGGLQFIPDLKGLMTK 917 (1878)
T ss_dssp -------------CCBCHHHHHHHHHHHHSHHHHHHHTTSCEEEEESCSGGGCTTHHHHHHH
T ss_pred -------------CCCCHHHHHHHHHHHhCCcccccccCcEEEEEcCCCccccCCHHHHHHH
Confidence 13478999999998886542 22346677663 4322 345555443
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-18 Score=182.57 Aligned_cols=224 Identities=15% Similarity=0.085 Sum_probs=150.1
Q ss_pred cCCCCCEEEEEcCCCh-hHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHHhh
Q 043169 86 HRSGGMSVLVTGAAGF-VGTHVSLALKKRGDGVVGL-DNFNNYYDPSLKKARKALL-NNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~-iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
+++++|+||||||+|+ ||.++++.|+++|++|+++ .|+.+..+........... ...++.++.+|++|.++++++++
T Consensus 472 msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe 551 (1688)
T 2pff_A 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIE 551 (1688)
T ss_dssp CCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHH
T ss_pred cccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 3478999999999998 9999999999999999998 4655544443322211110 13468899999999999988876
Q ss_pred cc-----------CCcEEEEcccccCch-h----h--ccCCchhhhhhHHHHHHHHHHHHh--cC---CCCeEEEEcccc
Q 043169 163 AV-----------AFTHVMHLAAQAGVR-Y----A--MQNPHSYVHSNIAGLVTLLEACKS--AN---PQPSIVWASSSS 219 (421)
Q Consensus 163 ~~-----------~~d~vi~~Ag~~~~~-~----~--~~~~~~~~~~N~~g~~~l~~~~~~--~~---~~~riV~~SS~~ 219 (421)
.+ ++|+||||||+.... . . .++++..+++|+.|+.+++++++. .- ..++||++||..
T Consensus 552 ~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiA 631 (1688)
T 2pff_A 552 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH 631 (1688)
T ss_dssp HHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCT
T ss_pred HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChH
Confidence 42 489999999986432 1 1 334567899999999999998732 21 113899999976
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHHHh--CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCe
Q 043169 220 VYGLNENVPFSEADRTDQPASLYAATKKAGEEI-AHTYNHIY--GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPI 296 (421)
Q Consensus 220 v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 296 (421)
.+. .....|+.||++.+.+ .+.++++. +|++++|.||.|.|....... ..........
T Consensus 632 G~~--------------Gg~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~---e~~~~~l~~i-- 692 (1688)
T 2pff_A 632 GTF--------------GGDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN---NIIAEGIEKM-- 692 (1688)
T ss_dssp TTS--------------SCBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTT---TTCSTTTSSS--
T ss_pred hcc--------------CCchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCc---hHHHHHHHhC--
Confidence 431 1346799999999998 44444433 299999999999853221110 0000000000
Q ss_pred EEEecCCCCcceeecccHHHHHHHHHHhhhcC-CCCCCceEEEe
Q 043169 297 TVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS-AGPAPYRIFNL 339 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~i 339 (421)
..-+..++|+|++++.++... .....|..+.+
T Consensus 693 -----------plR~~sPEEVA~aIlFLaSd~sAs~ITGq~I~V 725 (1688)
T 2pff_A 693 -----------GVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMA 725 (1688)
T ss_dssp -----------SCCCCCCCTTHHHHHHHTSTTHHHHHTTSCCCC
T ss_pred -----------CCCCCCHHHHHHHHHHHhCCCccccccCcEEEE
Confidence 012347899999999988654 11224566655
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=167.25 Aligned_cols=174 Identities=17% Similarity=0.093 Sum_probs=126.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
.+|+++||||+|+||.++++.|+++|++ |++++|+....+..............++.++.+|++|.++++++++.+
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999999999997 777888765543322222211122457889999999999999888764
Q ss_pred -CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
++|+||||||+... ..+.++++..+++|+.|+.++.+++.... ..++||++||.+..- ....
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~------------g~~g 2030 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGR------------GNAG 2030 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHT------------TCTT
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcC------------CCCC
Confidence 68999999998532 33556778899999999999988876542 124999999976431 1234
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCC
Q 043169 239 ASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGP 275 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~ 275 (421)
...|+.+|.+.+.+++..+.+ |++...+..|.+-+.
T Consensus 2031 ~~~Y~aaKaal~~l~~~rr~~-Gl~~~a~~~g~~~~~ 2066 (2512)
T 2vz8_A 2031 QANYGFANSAMERICEKRRHD-GLPGLAVQWGAIGDV 2066 (2512)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT-TSCCCEEEECCBCTT
T ss_pred cHHHHHHHHHHHHHHHHHHHC-CCcEEEEEccCcCCc
Confidence 578999999999999977664 999999998876443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-14 Score=161.96 Aligned_cols=241 Identities=13% Similarity=0.069 Sum_probs=150.9
Q ss_pred ccCCCCCEEEEEcCCCh-hHHHHHHHHHHCCCcEEEEeCCCCCCChh-HHHHHHHhh-cCCceEEEEcccCCHHHHHHHh
Q 043169 85 IHRSGGMSVLVTGAAGF-VGTHVSLALKKRGDGVVGLDNFNNYYDPS-LKKARKALL-NNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~-iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
+..++||++|||||+++ ||.++++.|+++|++|++.+|+.+..... .+....... ....+.++.+|++|.+++++++
T Consensus 2131 ~~~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv 2210 (3089)
T 3zen_D 2131 XXXXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLV 2210 (3089)
T ss_dssp TCCCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred cccCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHH
Confidence 34489999999999999 99999999999999999999865421000 111222211 2345788999999999998886
Q ss_pred hcc---------CCcEEEEcccccC----c-----hhhccCCchh----hhhhHHHHHHHHHHHHh----cCCCC--eEE
Q 043169 162 DAV---------AFTHVMHLAAQAG----V-----RYAMQNPHSY----VHSNIAGLVTLLEACKS----ANPQP--SIV 213 (421)
Q Consensus 162 ~~~---------~~d~vi~~Ag~~~----~-----~~~~~~~~~~----~~~N~~g~~~l~~~~~~----~~~~~--riV 213 (421)
+.+ ++|+||||||+.. . .....++... +++|+.++..+++++.. .+... .+|
T Consensus 2211 ~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii 2290 (3089)
T 3zen_D 2211 EWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVV 2290 (3089)
T ss_dssp HHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEE
Confidence 532 5899999999711 0 1123334444 88899998888877643 22211 222
Q ss_pred EEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH--h--CCcEEEEEeccccCCCCCC-CChHHHHHH
Q 043169 214 WASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI--Y--GLSITGLRFFTVYGPWGRP-DMAYFSFTR 288 (421)
Q Consensus 214 ~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~--gi~~~~vrp~~v~G~~~~~-~~~~~~~~~ 288 (421)
..+|. ..+ .......|+.||.+.+.+++.++.+ . +|+++.+.||.|-+..... .....
T Consensus 2291 ~~~ss-~~g------------~~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~~~~---- 2353 (3089)
T 3zen_D 2291 LPGSP-NRG------------MFGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQNDAIV---- 2353 (3089)
T ss_dssp EEECS-STT------------SCSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTTTTH----
T ss_pred EECCc-ccc------------cCCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccchhHH----
Confidence 22221 111 0112357999999999999999988 3 5999999999998542211 11111
Q ss_pred HHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCC-CCCceEE--EecCCC---ccCHHHHHHHHH
Q 043169 289 NILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG-PAPYRIF--NLGNTS---PVTVPKLVNILE 355 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~~~--~i~~~~---~~t~~el~~~l~ 355 (421)
........ -...++|+|.+++.++..... ...+... .++++- ..++.++...+.
T Consensus 2354 ~~~~~~~~-------------r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~ 2413 (3089)
T 3zen_D 2354 SAVEEAGV-------------TTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKAR 2413 (3089)
T ss_dssp HHHGGGSC-------------BCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHH
T ss_pred HHHHhcCC-------------CCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHH
Confidence 11111110 112689999999998764311 1112222 333433 357888877553
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-10 Score=109.35 Aligned_cols=179 Identities=13% Similarity=0.039 Sum_probs=116.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHH-HCCCcEEEEeCCCCCCChhH---------HHHHHHhhcCCceEEEEcccCCHHH
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALK-KRGDGVVGLDNFNNYYDPSL---------KKARKALLNNHGVFVIEGDINDAKL 156 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~~~~~v~~~~~Dl~d~~~ 156 (421)
...+|+||||||+++||.+++..|+ +.|+.|+++.+..+..+... .-.............+.+|++|.++
T Consensus 47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 47 AKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI 126 (401)
T ss_dssp SCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence 3568999999999999999999998 67999999998776554311 1111112234678899999999999
Q ss_pred HHHHhhcc-----CCcEEEEcccccCchh--------hccCC-------------c---------hhhhhhHHHHHH---
Q 043169 157 LAKLFDAV-----AFTHVMHLAAQAGVRY--------AMQNP-------------H---------SYVHSNIAGLVT--- 198 (421)
Q Consensus 157 ~~~~~~~~-----~~d~vi~~Ag~~~~~~--------~~~~~-------------~---------~~~~~N~~g~~~--- 198 (421)
++++++.+ ++|+|||++|...-.. +.-.+ . ..-+-++.+|..
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg 206 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG 206 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence 99988776 7999999999752100 00000 0 001112222221
Q ss_pred ------HHHHHHhcCC---CCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEE
Q 043169 199 ------LLEACKSANP---QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLR 268 (421)
Q Consensus 199 ------l~~~~~~~~~---~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-gi~~~~vr 268 (421)
..++....+. ..++|..|+.+.- -..+......++.+|.+.|..++.++.+. ++++.++.
T Consensus 207 ~s~~s~w~~al~~a~lla~G~siva~SYiGse----------~t~P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a~v~v 276 (401)
T 4ggo_A 207 GEDWERWIKQLSKEGLLEEGCITLAYSYIGPE----------ATQALYRKGTIGKAKEHLEATAHRLNKENPSIRAFVSV 276 (401)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCG----------GGHHHHTTSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred hhHHHHHHHHHHhhhcccCCceEEEEeccCcc----------eeecCCCccHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2223333221 1288888885421 00111223578999999999999999885 57888888
Q ss_pred eccccCC
Q 043169 269 FFTVYGP 275 (421)
Q Consensus 269 p~~v~G~ 275 (421)
++.+-..
T Consensus 277 ~~a~vT~ 283 (401)
T 4ggo_A 277 NKGLVTR 283 (401)
T ss_dssp CCCCCCT
T ss_pred cCccccc
Confidence 8777654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-10 Score=90.88 Aligned_cols=96 Identities=25% Similarity=0.189 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.+|+|+|+|+ |++|+++++.|.++| ++|++++|+.+ ........++.++.+|+++.+.+.++++++ |
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~---------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--d 71 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLA---------ALAVLNRMGVATKQVDAKDEAGLAKALGGF--D 71 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHH---------HHHHHHTTTCEEEECCTTCHHHHHHHTTTC--S
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHH---------HHHHHHhCCCcEEEecCCCHHHHHHHHcCC--C
Confidence 4578999999 999999999999999 99999998432 111122467889999999999999999866 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
+|||+++.. .+..+++++.+.+. +++.+|
T Consensus 72 ~vi~~~~~~------------------~~~~~~~~~~~~g~--~~~~~~ 100 (118)
T 3ic5_A 72 AVISAAPFF------------------LTPIIAKAAKAAGA--HYFDLT 100 (118)
T ss_dssp EEEECSCGG------------------GHHHHHHHHHHTTC--EEECCC
T ss_pred EEEECCCch------------------hhHHHHHHHHHhCC--CEEEec
Confidence 999999632 13578888988886 444333
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-11 Score=115.18 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=65.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+++|+++||||+|++|+++++.|+++|++|++++|+.++.+...+... ...++.++.+|++|.+++.++++++
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~-- 189 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN----KRFKVNVTAAETADDASRAEAVKGA-- 189 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH----HHHTCCCEEEECCSHHHHHHHTTTC--
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHH----hcCCcEEEEecCCCHHHHHHHHHhC--
Confidence 3678999999999999999999999999999999995432211111111 1124678889999999999999876
Q ss_pred cEEEEcccc
Q 043169 167 THVMHLAAQ 175 (421)
Q Consensus 167 d~vi~~Ag~ 175 (421)
|+||||||.
T Consensus 190 DvlVn~ag~ 198 (287)
T 1lu9_A 190 HFVFTAGAI 198 (287)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCc
Confidence 999999985
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=109.26 Aligned_cols=176 Identities=11% Similarity=0.072 Sum_probs=114.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHh
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-------GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
+.|+|+||||+|+||++++..|+.+|. +|++++++.+..+...+....+ ..+....+ ..|+....+..+++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~d-l~~~~~~~-~~~i~~~~~~~~al 81 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMME-IDDCAFPL-LAGMTAHADPMTAF 81 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHH-HHTTTCTT-EEEEEEESSHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHH-Hhhhcccc-cCcEEEecCcHHHh
Confidence 457999999999999999999999885 7999887410000001111111 11111111 13555445567788
Q ss_pred hccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEcccc-c--cCCCCCCCCCCCCCCCC
Q 043169 162 DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSS-V--YGLNENVPFSEADRTDQ 237 (421)
Q Consensus 162 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~-v--~g~~~~~~~~e~~~~~~ 237 (421)
+++ |+|||+||....+ ..+....+..|+.++.++++.+.+.+ +..+||++|.-. + +-.. +...-.+
T Consensus 82 ~~a--D~Vi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~------~~~~~~p 151 (329)
T 1b8p_A 82 KDA--DVALLVGARPRGP--GMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAM------KSAPSLP 151 (329)
T ss_dssp TTC--SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH------HTCTTSC
T ss_pred CCC--CEEEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHH------HHcCCCC
Confidence 888 9999999974321 22345678999999999999999985 666899998722 1 0000 0000012
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 043169 238 PASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPW 276 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~ 276 (421)
+...|+.+++...++...+++..|+....++..+|+|..
T Consensus 152 ~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H 190 (329)
T 1b8p_A 152 AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNH 190 (329)
T ss_dssp GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCS
T ss_pred HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEecc
Confidence 234578888888888888888889887778776778854
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-08 Score=95.98 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=81.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+.|+|+||||+|++|..++..|+.+| .+|++++++.+ .. ......... ....+ .. +.+..++.++++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~---~~-~~~dL~~~~-~~~~v-~~-~~~t~d~~~al~ga-- 77 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA---PG-VTADISHMD-TGAVV-RG-FLGQQQLEAALTGM-- 77 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH---HH-HHHHHHTSC-SSCEE-EE-EESHHHHHHHHTTC--
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc---Hh-HHHHhhccc-ccceE-EE-EeCCCCHHHHcCCC--
Confidence 45789999999999999999999998 78999997543 11 001111111 11111 22 33456778888888
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+|||+||....+ ..........|+.++.++++.+.+.++. .+|+++|
T Consensus 78 DvVi~~ag~~~~~--g~~r~dl~~~N~~~~~~i~~~i~~~~p~-~~viv~S 125 (326)
T 1smk_A 78 DLIIVPAGVPRKP--GMTRDDLFKINAGIVKTLCEGIAKCCPR-AIVNLIS 125 (326)
T ss_dssp SEEEECCCCCCCS--SCCCSHHHHHHHHHHHHHHHHHHHHCTT-SEEEECC
T ss_pred CEEEEcCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEEC
Confidence 9999999964321 1234567899999999999999999876 5666666
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=7.9e-08 Score=79.06 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~ 166 (421)
+++++|+|+|+ |.+|..+++.|.+.|++|++++++.+ ........+..++.+|.++.+.+.++ ++++
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~---------~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~-- 71 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEE---------KVNAYASYATHAVIANATEENELLSLGIRNF-- 71 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHH---------HHHTTTTTCSEEEECCTTCHHHHHTTTGGGC--
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHhCCEEEEeCCCCHHHHHhcCCCCC--
Confidence 45678999998 99999999999999999999998421 12222233567788999998887775 5555
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
|+||++++.. ...|. .+.+.+++.++. ++|..++..
T Consensus 72 d~vi~~~~~~------------~~~~~----~~~~~~~~~~~~-~ii~~~~~~ 107 (144)
T 2hmt_A 72 EYVIVAIGAN------------IQAST----LTTLLLKELDIP-NIWVKAQNY 107 (144)
T ss_dssp SEEEECCCSC------------HHHHH----HHHHHHHHTTCS-EEEEECCSH
T ss_pred CEEEECCCCc------------hHHHH----HHHHHHHHcCCC-eEEEEeCCH
Confidence 9999998631 01222 366677777765 777666543
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-08 Score=97.14 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=75.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC---CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG---DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|+|+|| |+||+.+++.|+++| .+|++++|+.++.+....... .....++..+.+|++|.+++.+++++.++|
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~--~~~~~~~~~~~~D~~d~~~l~~~l~~~~~D 78 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIK--AKGYGEIDITTVDADSIEELVALINEVKPQ 78 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHH--HTTCCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhh--hhcCCceEEEEecCCCHHHHHHHHHhhCCC
Confidence 68999999 999999999999998 389999996532222111111 001246889999999999999999986779
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
+|||||+... ...++++|.+.+. ++|-++
T Consensus 79 vVin~ag~~~------------------~~~v~~a~l~~g~--~vvD~a 107 (405)
T 4ina_A 79 IVLNIALPYQ------------------DLTIMEACLRTGV--PYLDTA 107 (405)
T ss_dssp EEEECSCGGG------------------HHHHHHHHHHHTC--CEEESS
T ss_pred EEEECCCccc------------------ChHHHHHHHHhCC--CEEEec
Confidence 9999998521 1357778888875 555443
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-08 Score=87.22 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=57.9
Q ss_pred CCCCEEEEEcC----------------CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEccc
Q 043169 88 SGGMSVLVTGA----------------AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151 (421)
Q Consensus 88 ~~~k~vlITG~----------------sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl 151 (421)
++||+|||||| +|+||.++|++|+++|++|+++++... .+ ...++. .+|+
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~-----------~~~g~~--~~dv 71 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP-----------TPPFVK--RVDV 71 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC-----------CCTTEE--EEEC
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc-----------cCCCCe--EEcc
Confidence 68999999999 699999999999999999999988542 11 012333 4688
Q ss_pred CCHHHHHHHhhc-c-CCcEEEEcccccCc
Q 043169 152 NDAKLLAKLFDA-V-AFTHVMHLAAQAGV 178 (421)
Q Consensus 152 ~d~~~~~~~~~~-~-~~d~vi~~Ag~~~~ 178 (421)
++.+++.+.+.. . ++|++|||||+...
T Consensus 72 ~~~~~~~~~v~~~~~~~Dili~~Aav~d~ 100 (226)
T 1u7z_A 72 MTALEMEAAVNASVQQQNIFIGCAAVADY 100 (226)
T ss_dssp CSHHHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred CcHHHHHHHHHHhcCCCCEEEECCcccCC
Confidence 887765544432 2 46999999998653
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-08 Score=93.49 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=102.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeC--CCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDN--FNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
|+|+||||+|++|++++..|+.+|. ++.++++ +.++.+......... ......+.+...| +++.++++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al~ga- 75 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRIIDES- 75 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGGTTC-
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHhCCC-
Confidence 5899999999999999999999884 5777886 321111000001111 0111122332211 2245667777
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHH-
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAA- 244 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~- 244 (421)
|+|||+||....+ .......+..|+.++.++++++++.+ . ++|+++|--+.-... .-... ...++...++.
T Consensus 76 -D~Vi~~Ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~-~-~~vlv~SNPv~~~t~-~~~k~--~~~p~~rviG~g 147 (313)
T 1hye_A 76 -DVVIITSGVPRKE--GMSRMDLAKTNAKIVGKYAKKIAEIC-D-TKIFVITNPVDVMTY-KALVD--SKFERNQVFGLG 147 (313)
T ss_dssp -SEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHC-C-CEEEECSSSHHHHHH-HHHHH--HCCCTTSEEECT
T ss_pred -CEEEECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEEecCcHHHHHH-HHHHh--hCcChhcEEEeC
Confidence 9999999974321 12335679999999999999999998 6 566666532200000 00000 01134456776
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCC
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGP 275 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~ 275 (421)
+.+...++...+++..|++..-++. .++|.
T Consensus 148 t~LD~~r~~~~la~~lgv~~~~v~~-~v~G~ 177 (313)
T 1hye_A 148 THLDSLRFKVAIAKFFGVHIDEVRT-RIIGE 177 (313)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEEC-CEEEC
T ss_pred ccHHHHHHHHHHHHHhCcCHHHeEE-EEeec
Confidence 7777777888888877876555654 56664
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.64 E-value=8.9e-08 Score=89.48 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=97.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeC--CCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDN--FNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
|+|+||||+|++|.+++..|+.+|. ++.++++ +.++.+...............+.+.. + + .++++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~a-- 71 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTAGS-- 71 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGTTC--
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhCCC--
Confidence 5899999999999999999999885 6888877 33211110111111100122333333 2 2 3457777
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccc----cCCCCCCCCCCCCCCCCCCChH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV----YGLNENVPFSEADRTDQPASLY 242 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v----~g~~~~~~~~e~~~~~~~~~~Y 242 (421)
|+|||+||....+ .......+..|+.++.++++.+++.++. .+|+++|--+ |-.. ... ..++....
T Consensus 72 DvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~-~~viv~SNPv~~~~~~~~-----~~~--~~p~~rvi 141 (303)
T 1o6z_A 72 DVVVITAGIPRQP--GQTRIDLAGDNAPIMEDIQSSLDEHNDD-YISLTTSNPVDLLNRHLY-----EAG--DRSREQVI 141 (303)
T ss_dssp SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHTTCSC-CEEEECCSSHHHHHHHHH-----HHS--SSCGGGEE
T ss_pred CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHH-----HHc--CCCHHHee
Confidence 9999999974321 1223467899999999999999999876 5666666322 0000 000 01122334
Q ss_pred HH-HHHHHHHHHHHHHHHhCCcEEEEEeccccCC
Q 043169 243 AA-TKKAGEEIAHTYNHIYGLSITGLRFFTVYGP 275 (421)
Q Consensus 243 ~~-sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~ 275 (421)
+. +-+...++...+++..|+...-++ ..|+|.
T Consensus 142 G~gt~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~ 174 (303)
T 1o6z_A 142 GFGGRLDSARFRYVLSEEFDAPVQNVE-GTILGE 174 (303)
T ss_dssp ECCHHHHHHHHHHHHHHHHTCCGGGEE-CCEEEC
T ss_pred ecccchhHHHHHHHHHHHhCcCHHHeE-EEEEeC
Confidence 44 444445555666666777666666 677774
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=83.95 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=54.8
Q ss_pred CCCEEEEEcC----------------CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC
Q 043169 89 GGMSVLVTGA----------------AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152 (421)
Q Consensus 89 ~~k~vlITG~----------------sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 152 (421)
.||+|||||| +|++|.++|++|+++|++|+++.|..+.... ...++.++ |+.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~----------~~~~~~~~--~v~ 69 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE----------PHPNLSIR--EIT 69 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC----------CCTTEEEE--ECC
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc----------CCCCeEEE--EHh
Confidence 6899999999 8999999999999999999999995532110 01345444 555
Q ss_pred CHHHHHHHhhc-c-CCcEEEEcccccCc
Q 043169 153 DAKLLAKLFDA-V-AFTHVMHLAAQAGV 178 (421)
Q Consensus 153 d~~~~~~~~~~-~-~~d~vi~~Ag~~~~ 178 (421)
+.+++.+.+.. + +.|++|||||+...
T Consensus 70 s~~em~~~v~~~~~~~Dili~aAAvsD~ 97 (232)
T 2gk4_A 70 NTKDLLIEMQERVQDYQVLIHSMAVSDY 97 (232)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECSBCCSE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCccccc
Confidence 55444333322 1 45999999998654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.5e-07 Score=75.18 Aligned_cols=100 Identities=20% Similarity=0.322 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~ 166 (421)
.++++|+|+|+ |.+|+++++.|.++|++|++++++.+ ........++.++.+|.++++.++++ ++ +.
T Consensus 4 ~~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~---------~~~~~~~~~~~~~~gd~~~~~~l~~~~~~--~~ 71 (141)
T 3llv_A 4 NGRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKE---------KIELLEDEGFDAVIADPTDESFYRSLDLE--GV 71 (141)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH---------HHHHHHHTTCEEEECCTTCHHHHHHSCCT--TC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHH---------HHHHHHHCCCcEEECCCCCHHHHHhCCcc--cC
Confidence 34678999998 99999999999999999999998432 11112224678999999999988876 23 45
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||.+.+.. ..|. .+...+++.+ ..++|...+
T Consensus 72 d~vi~~~~~~-------------~~n~----~~~~~a~~~~-~~~iia~~~ 104 (141)
T 3llv_A 72 SAVLITGSDD-------------EFNL----KILKALRSVS-DVYAIVRVS 104 (141)
T ss_dssp SEEEECCSCH-------------HHHH----HHHHHHHHHC-CCCEEEEES
T ss_pred CEEEEecCCH-------------HHHH----HHHHHHHHhC-CceEEEEEc
Confidence 9999876511 2233 3555666666 436665443
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.2e-07 Score=90.44 Aligned_cols=110 Identities=22% Similarity=0.128 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|+|+|+| +|++|+++++.|++.|++|++++|+.+ ..........++..+.+|++|.+++.++++++ |+
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~-------~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~--Dv 71 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLE-------SAKKLSAGVQHSTPISLDVNDDAALDAEVAKH--DL 71 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHH-------HHHHTTTTCTTEEEEECCTTCHHHHHHHHTTS--SE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHH-------HHHHHHHhcCCceEEEeecCCHHHHHHHHcCC--cE
Confidence 468999998 799999999999999999999998431 11111111124778899999999999998865 99
Q ss_pred EEEcccccCch-hh---ccCCchhhh--hhHHHHHHHHHHHHhcCC
Q 043169 169 VMHLAAQAGVR-YA---MQNPHSYVH--SNIAGLVTLLEACKSANP 208 (421)
Q Consensus 169 vi~~Ag~~~~~-~~---~~~~~~~~~--~N~~g~~~l~~~~~~~~~ 208 (421)
|||+++..... .. ...-..+++ ....++..++++|++.|+
T Consensus 72 VIn~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv 117 (450)
T 1ff9_A 72 VISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI 117 (450)
T ss_dssp EEECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTC
T ss_pred EEECCccccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCC
Confidence 99999864211 00 000011111 113467889999999885
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-06 Score=83.45 Aligned_cols=94 Identities=19% Similarity=0.112 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+.|+|+|.|| |++|+.+++.|++ .++|.+.+++.+ .. +. ....+..+.+|+.|.+++.++++++ |+
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~-------~~--~~-~~~~~~~~~~d~~d~~~l~~~~~~~--Dv 80 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNE-------NL--EK-VKEFATPLKVDASNFDKLVEVMKEF--EL 80 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHH-------HH--HH-HTTTSEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHH-------HH--HH-HhccCCcEEEecCCHHHHHHHHhCC--CE
Confidence 4578999998 9999999999865 589999988432 11 11 2346778899999999999999988 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|||+++... ...++++|.++|. ++|-+|
T Consensus 81 Vi~~~p~~~------------------~~~v~~~~~~~g~--~yvD~s 108 (365)
T 3abi_A 81 VIGALPGFL------------------GFKSIKAAIKSKV--DMVDVS 108 (365)
T ss_dssp EEECCCGGG------------------HHHHHHHHHHHTC--EEEECC
T ss_pred EEEecCCcc------------------cchHHHHHHhcCc--ceEeee
Confidence 999987421 2357888888885 777665
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.9e-07 Score=87.84 Aligned_cols=110 Identities=22% Similarity=0.154 Sum_probs=75.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+++|+|+|+|+ |++|+.++..|++. |++|++++|+.++ .+.. . ...++.++.+|+.|.+++.++++++
T Consensus 21 l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~k----a~~l-a---~~~~~~~~~~D~~d~~~l~~~l~~~-- 89 (467)
T 2axq_A 21 HMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLAN----AQAL-A---KPSGSKAISLDVTDDSALDKVLADN-- 89 (467)
T ss_dssp --CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHH----HHHH-H---GGGTCEEEECCTTCHHHHHHHHHTS--
T ss_pred CCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHH----HHHH-H---HhcCCcEEEEecCCHHHHHHHHcCC--
Confidence 56789999998 99999999999998 7899999994321 0111 1 1135677889999999999988866
Q ss_pred cEEEEcccccCch-h---hccCCchhhhhhH--HHHHHHHHHHHhcCC
Q 043169 167 THVMHLAAQAGVR-Y---AMQNPHSYVHSNI--AGLVTLLEACKSANP 208 (421)
Q Consensus 167 d~vi~~Ag~~~~~-~---~~~~~~~~~~~N~--~g~~~l~~~~~~~~~ 208 (421)
|+|||+++..... . ....-..+++++. ..+..+++.+++.|+
T Consensus 90 DvVIn~tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv 137 (467)
T 2axq_A 90 DVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGI 137 (467)
T ss_dssp SEEEECSCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTC
T ss_pred CEEEECCchhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCC
Confidence 9999999864211 0 0111122333333 346788888888874
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-06 Score=68.69 Aligned_cols=99 Identities=22% Similarity=0.300 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d 167 (421)
++|+|+|+|+ |.+|..+++.|.+.|++|++++++.+ ..+... ...++.++.+|.++.+.+.+. ++++ |
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~----~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~~~--d 71 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKD----ICKKAS----AEIDALVINGDCTKIKTLEDAGIEDA--D 71 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHH----HHCSSEEEESCTTSHHHHHHTTTTTC--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH----HHHHHH----HhcCcEEEEcCCCCHHHHHHcCcccC--C
Confidence 4578999997 99999999999999999999998432 111111 112567888999998877654 4444 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
+||++.+.. ..| ..+.+.+++.+.. ++|..+
T Consensus 72 ~vi~~~~~~-------------~~~----~~~~~~~~~~~~~-~ii~~~ 102 (140)
T 1lss_A 72 MYIAVTGKE-------------EVN----LMSSLLAKSYGIN-KTIARI 102 (140)
T ss_dssp EEEECCSCH-------------HHH----HHHHHHHHHTTCC-CEEEEC
T ss_pred EEEEeeCCc-------------hHH----HHHHHHHHHcCCC-EEEEEe
Confidence 999987421 122 2455666766654 676533
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-07 Score=79.97 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH---hhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL---FDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~---~~~~~ 165 (421)
.+++|+||||+|+||..+++.+...|++|++++++.+ ..+ .... .+... ..|..+.+..+++ .....
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~-----~~~-~~~~---~g~~~-~~d~~~~~~~~~~~~~~~~~~ 107 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA-----KRE-MLSR---LGVEY-VGDSRSVDFADEILELTDGYG 107 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH-----HHH-HHHT---TCCSE-EEETTCSTHHHHHHHHTTTCC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH-----HHH-HHHH---cCCCE-EeeCCcHHHHHHHHHHhCCCC
Confidence 6789999999999999999999999999999998432 111 1111 12222 2466654433333 32225
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
+|+||||+|.. .....++.++..| ++|.+++..
T Consensus 108 ~D~vi~~~g~~------------------~~~~~~~~l~~~G---~~v~~g~~~ 140 (198)
T 1pqw_A 108 VDVVLNSLAGE------------------AIQRGVQILAPGG---RFIELGKKD 140 (198)
T ss_dssp EEEEEECCCTH------------------HHHHHHHTEEEEE---EEEECSCGG
T ss_pred CeEEEECCchH------------------HHHHHHHHhccCC---EEEEEcCCC
Confidence 79999999731 1234555555555 899988755
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=6.2e-07 Score=84.55 Aligned_cols=172 Identities=12% Similarity=0.091 Sum_probs=103.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC--c-----EEEEeCCCCCCChhHHH--HHHHhhcCCceEEEEcccCCHHHHHHH
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD--G-----VVGLDNFNNYYDPSLKK--ARKALLNNHGVFVIEGDINDAKLLAKL 160 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~--~-----V~~~~r~~~~~~~~~~~--~~~~~~~~~~v~~~~~Dl~d~~~~~~~ 160 (421)
.++|.||||+|+||++++..|+..|. + ++++|+.... ...+. ........+-+. ++...+...+.
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~--~~~~g~a~DL~~~~~~~~~----~~~~~~~~~~~ 76 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMM--GVLDGVLMELQDCALPLLK----DVIATDKEEIA 76 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGH--HHHHHHHHHHHHTCCTTEE----EEEEESCHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCcc--ccchhhHhhhHhhhhcccC----CEEEcCCcHHH
Confidence 47899999999999999999998875 5 8888873210 01111 111111112121 22111234566
Q ss_pred hhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCC-eEEEEcccc---ccCCCCCCCCCCCCCCC
Q 043169 161 FDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP-SIVWASSSS---VYGLNENVPFSEADRTD 236 (421)
Q Consensus 161 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-riV~~SS~~---v~g~~~~~~~~e~~~~~ 236 (421)
++++ |+||+.||.... ...+....++.|+..+..+++.+++.+... +++.+|.-. +|-.. +.. ..
T Consensus 77 ~~da--DvVvitAg~prk--pG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~~------~~~-~~ 145 (333)
T 5mdh_A 77 FKDL--DVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTAS------KSA-PS 145 (333)
T ss_dssp TTTC--SEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH------HTC-TT
T ss_pred hCCC--CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHHH------HHc-CC
Confidence 7777 999999996432 223556789999999999999999998764 577777521 11000 000 00
Q ss_pred CCCChH-HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 237 QPASLY-AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 237 ~~~~~Y-~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
.|.... +.+-+...++-..+++..|++...|+-..|+|...+
T Consensus 146 ~p~~~ig~~t~LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd 188 (333)
T 5mdh_A 146 IPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS 188 (333)
T ss_dssp SCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred CCcCEEEEEEhHHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC
Confidence 111112 245555566666677777887777764446776443
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.5e-06 Score=78.99 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=78.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC---HHHHHHHhhccC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND---AKLLAKLFDAVA 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~~~~~~~~~~ 165 (421)
|+|.|+||+|++|..++..|+.+| .+|+++|++. . .....+ +.+.... +++.. ..+.+++++++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-----~-~~~a~d-L~~~~~~---~~l~~~~~t~d~~~a~~~a- 69 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-----T-PGVAAD-LSHIETR---ATVKGYLGPEQLPDCLKGC- 69 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-----H-HHHHHH-HTTSSSS---CEEEEEESGGGHHHHHTTC-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-----c-HHHHHH-HhccCcC---ceEEEecCCCCHHHHhCCC-
Confidence 589999999999999999999988 7899999854 1 111111 1111100 11211 13356678888
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||++||....+ .......+..|+.....+.+.+.+.++..+||++|-
T Consensus 70 -DvVvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 70 -DVVVIPAGVPRKP--GMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp -SEEEECCSCCCCT--TCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred -CEEEECCCcCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 9999999975321 123346789999999999999998887668888764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-05 Score=67.36 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhc-CCceEEEEcccCCHHHHHHH-hhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLN-NHGVFVIEGDINDAKLLAKL-FDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~~~~~-~~~~ 164 (421)
...+++|+|+|+ |.+|..+++.|.+.|++|++++|+.++.+ ... ..++.++.+|..+.+.+.++ ++++
T Consensus 16 ~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~---------~~~~~~g~~~~~~d~~~~~~l~~~~~~~a 85 (155)
T 2g1u_A 16 KQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFH---------RLNSEFSGFTVVGDAAEFETLKECGMEKA 85 (155)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGG---------GSCTTCCSEEEESCTTSHHHHHTTTGGGC
T ss_pred ccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH---------HHHhcCCCcEEEecCCCHHHHHHcCcccC
Confidence 356889999996 99999999999999999999998653221 112 34567788999998877665 5555
Q ss_pred CCcEEEEccc
Q 043169 165 AFTHVMHLAA 174 (421)
Q Consensus 165 ~~d~vi~~Ag 174 (421)
|+||.+.+
T Consensus 86 --d~Vi~~~~ 93 (155)
T 2g1u_A 86 --DMVFAFTN 93 (155)
T ss_dssp --SEEEECSS
T ss_pred --CEEEEEeC
Confidence 99999876
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.3e-05 Score=64.20 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d 167 (421)
..++|+|+|+ |.+|+.+++.|.+.|++|++++++.. +..+.. ......++.++.+|.+|++.+.++ ++++ |
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~---~~~~~~--~~~~~~~~~~i~gd~~~~~~l~~a~i~~a--d 73 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPE---DDIKQL--EQRLGDNADVIPGDSNDSSVLKKAGIDRC--R 73 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCH---HHHHHH--HHHHCTTCEEEESCTTSHHHHHHHTTTTC--S
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCh---HHHHHH--HHhhcCCCeEEEcCCCCHHHHHHcChhhC--C
Confidence 3467999996 99999999999999999999998421 000111 111235689999999999998887 6666 9
Q ss_pred EEEEccc
Q 043169 168 HVMHLAA 174 (421)
Q Consensus 168 ~vi~~Ag 174 (421)
.||.+.+
T Consensus 74 ~vi~~~~ 80 (153)
T 1id1_A 74 AILALSD 80 (153)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9998764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-05 Score=69.13 Aligned_cols=76 Identities=25% Similarity=0.361 Sum_probs=58.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH--hhc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL--FDA 163 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~--~~~ 163 (421)
.+.+++|+|.|+ |.+|..+++.|.+. |++|++++++.+ ........++.++.+|.++.+.+.++ +++
T Consensus 36 ~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~---------~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ 105 (183)
T 3c85_A 36 NPGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREE---------AAQQHRSEGRNVISGDATDPDFWERILDTGH 105 (183)
T ss_dssp CCTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHH---------HHHHHHHTTCCEEECCTTCHHHHHTBCSCCC
T ss_pred CCCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHH---------HHHHHHHCCCCEEEcCCCCHHHHHhccCCCC
Confidence 356788999995 99999999999999 999999998432 11112224677889999999887776 555
Q ss_pred cCCcEEEEccc
Q 043169 164 VAFTHVMHLAA 174 (421)
Q Consensus 164 ~~~d~vi~~Ag 174 (421)
+ |+||.+.+
T Consensus 106 a--d~vi~~~~ 114 (183)
T 3c85_A 106 V--KLVLLAMP 114 (183)
T ss_dssp C--CEEEECCS
T ss_pred C--CEEEEeCC
Confidence 5 99998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.3e-05 Score=61.93 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=56.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCCcE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAFTH 168 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~ 168 (421)
.++|+|.|+ |.+|..+++.|.+.|++|++++++.+ ..+.....++.++.+|.++++.+.++ ++++ |+
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~---------~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~a--d~ 74 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRT---------RVDELRERGVRAVLGNAANEEIMQLAHLECA--KW 74 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH---------HHHHHHHTTCEEEESCTTSHHHHHHTTGGGC--SE
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHH---------HHHHHHHcCCCEEECCCCCHHHHHhcCcccC--CE
Confidence 457899997 99999999999999999999998432 11112235788999999999988775 3444 99
Q ss_pred EEEccc
Q 043169 169 VMHLAA 174 (421)
Q Consensus 169 vi~~Ag 174 (421)
||-+.+
T Consensus 75 vi~~~~ 80 (140)
T 3fwz_A 75 LILTIP 80 (140)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 987764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-05 Score=76.39 Aligned_cols=171 Identities=10% Similarity=0.099 Sum_probs=98.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
+.+++|.|+|++|+||+.++..|+.+| .+|+++|++.++.+..............++.+ . ....++++++
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t------~d~~~al~dA- 77 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-T------SDIKEALTDA- 77 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-E------SCHHHHHTTE-
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-c------CCHHHHhCCC-
Confidence 567899999999999999999999998 48999998443211111111111111112221 1 1244667777
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCe-EEEEcccc---ccCCCCCCCCCCCCCCCCCCCh
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS-IVWASSSS---VYGLNENVPFSEADRTDQPASL 241 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~r-iV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~ 241 (421)
|+||.+||.... ...+....+..|......+.+.+.+.++... ++.+|.-. +|-. +..... ++...
T Consensus 78 -DvVvitaG~p~k--pG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~-----~k~sg~--p~~rv 147 (343)
T 3fi9_A 78 -KYIVSSGGAPRK--EGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT-----LIYSGL--KPSQV 147 (343)
T ss_dssp -EEEEECCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHH-----HHHHTC--CGGGE
T ss_pred -CEEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHH-----HHHcCC--CcceE
Confidence 999999996321 1123446788999999999999998887654 56665421 0000 000000 11111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 043169 242 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPW 276 (421)
Q Consensus 242 Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~ 276 (421)
.+.+-+...++...+++..|+....|+=..|+|..
T Consensus 148 ~g~t~LDs~R~~~~la~~l~v~~~~v~~~~ViGeH 182 (343)
T 3fi9_A 148 TTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH 182 (343)
T ss_dssp EEECCHHHHHHHHHHHHHHTSCGGGEECCCEEESS
T ss_pred EEecCcHHHHHHHHHHHHhCcCHHHcccceEEEcC
Confidence 22233444555666666677776666645577753
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=9.1e-06 Score=77.38 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH----HHHHHhhc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK----LLAKLFDA 163 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~----~~~~~~~~ 163 (421)
..+++|||+||+|+||..+++.+...|++|++++|+.++. +.. .. . +.. ...|+++.+ .+.++...
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~----~~~-~~-~---g~~-~~~d~~~~~~~~~~~~~~~~~ 237 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKE----ELF-RS-I---GGE-VFIDFTKEKDIVGAVLKATDG 237 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHH----HHH-HH-T---TCC-EEEETTTCSCHHHHHHHHHTS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHH----HHH-HH-c---CCc-eEEecCccHhHHHHHHHHhCC
Confidence 3678999999999999999999999999999999865422 111 11 1 111 123666332 33333333
Q ss_pred cCCcEEEEcccc
Q 043169 164 VAFTHVMHLAAQ 175 (421)
Q Consensus 164 ~~~d~vi~~Ag~ 175 (421)
.+|+||+++|.
T Consensus 238 -~~D~vi~~~g~ 248 (347)
T 2hcy_A 238 -GAHGVINVSVS 248 (347)
T ss_dssp -CEEEEEECSSC
T ss_pred -CCCEEEECCCc
Confidence 67999999984
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.2e-05 Score=74.02 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHH---HHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKL---LAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---~~~~~~~~~ 165 (421)
.+++|+||||+|+||..+++.+...|++|++++++.++ .+.. .. .. .. ...|..+.+. +.+......
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~----~~~~-~~-~g-~~---~~~~~~~~~~~~~~~~~~~~~~ 209 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK----AQSA-LK-AG-AW---QVINYREEDLVERLKEITGGKK 209 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH----HHHH-HH-HT-CS---EEEETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHH-HH-cC-CC---EEEECCCccHHHHHHHHhCCCC
Confidence 57899999999999999999999999999999984321 1111 11 11 11 1235555433 333333335
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
+|+||+|+|... ....++.++..| ++|.+++.
T Consensus 210 ~D~vi~~~g~~~------------------~~~~~~~l~~~G---~iv~~g~~ 241 (327)
T 1qor_A 210 VRVVYDSVGRDT------------------WERSLDCLQRRG---LMVSFGNS 241 (327)
T ss_dssp EEEEEECSCGGG------------------HHHHHHTEEEEE---EEEECCCT
T ss_pred ceEEEECCchHH------------------HHHHHHHhcCCC---EEEEEecC
Confidence 799999998210 234455555554 89988764
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.9e-05 Score=70.85 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+++|+++|+|+ |++|++++..|++.|. +|++++|+.+..+.+. ..........++.+...++.+.+++.+.+.++
T Consensus 151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~-~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~a- 227 (315)
T 3tnl_A 151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAE-KTVEKINSKTDCKAQLFDIEDHEQLRKEIAES- 227 (315)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHH-HHHHHHHHHSSCEEEEEETTCHHHHHHHHHTC-
T ss_pred CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHH-HHHHHhhhhcCCceEEeccchHHHHHhhhcCC-
Confidence 478999999997 8999999999999998 8999999632221211 11111111123444556777877788888777
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
|+|||+-..
T Consensus 228 -DiIINaTp~ 236 (315)
T 3tnl_A 228 -VIFTNATGV 236 (315)
T ss_dssp -SEEEECSST
T ss_pred -CEEEECccC
Confidence 999998754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.4e-05 Score=72.89 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH---HHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK---LLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~~ 165 (421)
.+++|+|+||+|+||..+++.+...|++|++++++.++ .+.. .. .. .. ...|..+.+ .+.+......
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~----~~~~-~~-~g-~~---~~~d~~~~~~~~~i~~~~~~~~ 214 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEK----AETA-RK-LG-CH---HTINYSTQDFAEVVREITGGKG 214 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHH----HHHH-HH-HT-CS---EEEETTTSCHHHHHHHHHTTCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHH-HH-cC-CC---EEEECCCHHHHHHHHHHhCCCC
Confidence 57899999999999999999999999999999985321 1111 11 11 11 123555433 3444433335
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
+|+||+|+|... ....++.++..| ++|.+++.
T Consensus 215 ~d~vi~~~g~~~------------------~~~~~~~l~~~G---~iv~~g~~ 246 (333)
T 1wly_A 215 VDVVYDSIGKDT------------------LQKSLDCLRPRG---MCAAYGHA 246 (333)
T ss_dssp EEEEEECSCTTT------------------HHHHHHTEEEEE---EEEECCCT
T ss_pred CeEEEECCcHHH------------------HHHHHHhhccCC---EEEEEecC
Confidence 799999998411 234455555555 88877754
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.5e-05 Score=66.68 Aligned_cols=75 Identities=19% Similarity=0.080 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHHCCCcEEEEeCCCCCCChh--HHHHHHHhhcCCceEEEEcccCCH--HHHHHHhhcc----CCcEEEE
Q 043169 100 GFVGTHVSLALKKRGDGVVGLDNFNNYYDPS--LKKARKALLNNHGVFVIEGDINDA--KLLAKLFDAV----AFTHVMH 171 (421)
Q Consensus 100 G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~v~~~~~Dl~d~--~~~~~~~~~~----~~d~vi~ 171 (421)
|.++.++++.|++.|++|++..|+....... ...... .....+..+.+|++++ +++.++++.+ .-|++||
T Consensus 26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~--~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVn 103 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVT--QAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVH 103 (157)
T ss_dssp BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHH--HTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHH--HcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 5789999999999999999988865443221 111111 1234567788999998 8888877653 2399999
Q ss_pred ccccc
Q 043169 172 LAAQA 176 (421)
Q Consensus 172 ~Ag~~ 176 (421)
|||..
T Consensus 104 nAgg~ 108 (157)
T 3gxh_A 104 CLANY 108 (157)
T ss_dssp CSBSH
T ss_pred CCCCC
Confidence 99963
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=5e-05 Score=71.21 Aligned_cols=170 Identities=14% Similarity=0.125 Sum_probs=99.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.+.++|.|+|+ |++|..++..|+..|. +|++++++.++.+.......... ....++.+...| .+.++++
T Consensus 3 ~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~-------~~a~~~a 74 (326)
T 3pqe_A 3 KHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT-------YEDCKDA 74 (326)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC-------GGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc-------HHHhCCC
Confidence 35689999996 9999999999999986 89999984322111111111110 111244444333 1356666
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCCh
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASL 241 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~ 241 (421)
|+||.+||....+ ..+....+..|......+.+.+.+.++...++.+|.-. .|-. ..... .++...
T Consensus 75 --DvVvi~ag~p~kp--G~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~-----~k~~g--~p~~rv 143 (326)
T 3pqe_A 75 --DIVCICAGANQKP--GETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYAT-----WKFSG--LPKERV 143 (326)
T ss_dssp --SEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH-----HHHHC--CCGGGE
T ss_pred --CEEEEecccCCCC--CccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHH-----HHhcC--CCHHHE
Confidence 9999999963211 12334678899999999999999888765777666421 0000 00000 011222
Q ss_pred HHH-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 043169 242 YAA-TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWG 277 (421)
Q Consensus 242 Y~~-sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~ 277 (421)
.+. +-+...++...+++..|++...++- .|+|...
T Consensus 144 iG~gt~LD~~R~~~~la~~lgv~~~~V~~-~V~GeHG 179 (326)
T 3pqe_A 144 IGSGTTLDSARFRFMLSEYFGAAPQNVCA-HIIGEHG 179 (326)
T ss_dssp EECTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEBSSS
T ss_pred EeeccccHHHHHHHHHHHHhCCCHHHcee-eeeecCC
Confidence 232 3344445555566666776666664 5777653
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.85 E-value=8.8e-05 Score=65.49 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=56.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~v 169 (421)
|+|+|+|+ |.+|+++++.|.++|++|++++++.+. .+.. ....++.++.+|.++.+.+.++ ++++ |+|
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~----~~~l----~~~~~~~~i~gd~~~~~~l~~a~i~~a--d~v 69 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDREL----CEEF----AKKLKATIIHGDGSHKEILRDAEVSKN--DVV 69 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHH----HHHH----HHHSSSEEEESCTTSHHHHHHHTCCTT--CEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH----HHHH----HHHcCCeEEEcCCCCHHHHHhcCcccC--CEE
Confidence 57999997 999999999999999999999984321 1111 1124678999999999998887 5555 999
Q ss_pred EEccc
Q 043169 170 MHLAA 174 (421)
Q Consensus 170 i~~Ag 174 (421)
|-+.+
T Consensus 70 i~~~~ 74 (218)
T 3l4b_C 70 VILTP 74 (218)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 97654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.3e-05 Score=71.29 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=58.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+++++|+|+|+ |.||..+++.|...|++|++++|+.++ .+... ... ... +.+|..+.+++.++++++
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~----~~~~~-~~~-g~~---~~~~~~~~~~l~~~~~~~-- 230 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKR----LQYLD-DVF-GGR---VITLTATEANIKKSVQHA-- 230 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHH-HHT-TTS---EEEEECCHHHHHHHHHHC--
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHH----HHHHH-Hhc-Cce---EEEecCCHHHHHHHHhCC--
Confidence 367899999999 999999999999999999999984321 11111 111 111 456788888899988877
Q ss_pred cEEEEccccc
Q 043169 167 THVMHLAAQA 176 (421)
Q Consensus 167 d~vi~~Ag~~ 176 (421)
|+||++++..
T Consensus 231 DvVi~~~g~~ 240 (369)
T 2eez_A 231 DLLIGAVLVP 240 (369)
T ss_dssp SEEEECCC--
T ss_pred CEEEECCCCC
Confidence 9999999863
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=6e-05 Score=71.89 Aligned_cols=99 Identities=11% Similarity=-0.003 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH---HHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK---LLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~~ 165 (421)
.|++|+|+||+|+||..+++.+...|++|++++++.++. +.. .... .. ..+|..+.+ .+.+......
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~----~~~--~~~g-~~---~~~~~~~~~~~~~~~~~~~~~~ 231 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKL----QMA--EKLG-AA---AGFNYKKEDFSEATLKFTKGAG 231 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHH--HHHT-CS---EEEETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHH----HHH--HHcC-Cc---EEEecCChHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999853211 111 1111 11 123555433 3334333335
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
+|+||+|+|... ....++.++..| ++|.++..
T Consensus 232 ~d~vi~~~G~~~------------------~~~~~~~l~~~G---~iv~~G~~ 263 (354)
T 2j8z_A 232 VNLILDCIGGSY------------------WEKNVNCLALDG---RWVLYGLM 263 (354)
T ss_dssp EEEEEESSCGGG------------------HHHHHHHEEEEE---EEEECCCT
T ss_pred ceEEEECCCchH------------------HHHHHHhccCCC---EEEEEecc
Confidence 799999998421 233455566555 88877653
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.9e-05 Score=71.88 Aligned_cols=168 Identities=11% Similarity=0.099 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhc--CCceEEEEcccCCHHHHHHHhhc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLN--NHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
..+++|.|+|+ |.+|+.++..|+..|. +|+++|++.++.+... ....... ...+.+...| .+.+++
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a--~DL~~~~~~~~~~~i~~~~-------~~a~~~ 76 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDA--IDLEDALPFTSPKKIYSAE-------YSDAKD 76 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH--HHHHTTGGGSCCCEEEECC-------GGGGTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHH--hhHhhhhhhcCCcEEEECc-------HHHhcC
Confidence 46789999997 9999999999999986 8999998432211111 1111111 1234444332 235666
Q ss_pred cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCC
Q 043169 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPAS 240 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~ 240 (421)
+ |+||..||....+ -.+....++.|..-...+.+.+.+.++...++.+|.-. .|-. .... ..++..
T Consensus 77 a--DiVvi~ag~~~kp--G~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~-----~k~~--g~p~~r 145 (326)
T 3vku_A 77 A--DLVVITAGAPQKP--GETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT-----WKLS--GFPKNR 145 (326)
T ss_dssp C--SEEEECCCCC------------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHH-----HHHH--CCCGGG
T ss_pred C--CEEEECCCCCCCC--CchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHH-----HHhc--CCCHHH
Confidence 6 9999999974211 12345678889888899999999888765777666421 0000 0000 001122
Q ss_pred hHHH-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 043169 241 LYAA-TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWG 277 (421)
Q Consensus 241 ~Y~~-sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~ 277 (421)
..+. +-+...++...+++..|++..-++- .|+|...
T Consensus 146 viG~gt~LD~~R~~~~la~~lgv~~~~V~~-~ViGeHG 182 (326)
T 3vku_A 146 VVGSGTSLDTARFRQSIAKMVNVDARSVHA-YIMGEHG 182 (326)
T ss_dssp EEECTTHHHHHHHHHHHHHHHTSCGGGEEC-CEEBSSS
T ss_pred eeeecccCcHHHHHHHHHHHhCCCHHHCeE-EEEcCCC
Confidence 2232 3344445555566666776666664 6777653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.1e-05 Score=74.32 Aligned_cols=101 Identities=24% Similarity=0.245 Sum_probs=63.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc---c
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA---V 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~---~ 164 (421)
..+++|+||||+|+||..+++.+...|++|++++++.++ .+.. ... +.. ..+|.++.+++.+.+.+ -
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~----~~~~--~~~---g~~-~~~d~~~~~~~~~~~~~~~~~ 213 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEK----IAYL--KQI---GFD-AAFNYKTVNSLEEALKKASPD 213 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHH----HHHH--HHT---TCS-EEEETTSCSCHHHHHHHHCTT
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHH----HHHH--Hhc---CCc-EEEecCCHHHHHHHHHHHhCC
Confidence 368999999999999999999999999999999984321 1111 111 111 22466652222222221 2
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
.+|+||||+|.. .....++.++..| ++|.++...
T Consensus 214 ~~d~vi~~~g~~------------------~~~~~~~~l~~~G---~~v~~g~~~ 247 (333)
T 1v3u_A 214 GYDCYFDNVGGE------------------FLNTVLSQMKDFG---KIAICGAIS 247 (333)
T ss_dssp CEEEEEESSCHH------------------HHHHHHTTEEEEE---EEEECCCCC
T ss_pred CCeEEEECCChH------------------HHHHHHHHHhcCC---EEEEEeccc
Confidence 579999999831 0223444445444 888877643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00011 Score=70.06 Aligned_cols=98 Identities=19% Similarity=0.209 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHH---HHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKL---LAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---~~~~~~~~~ 165 (421)
.+++|+|+||+|+||..+++.+...|++|++++++.++ .+. .... +.. ...|..+.+. +.+......
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~-----~~~-~~~~---ga~-~~~d~~~~~~~~~~~~~~~~~~ 239 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEG-----QKI-VLQN---GAH-EVFNHREVNYIDKIKKYVGEKG 239 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHH-----HHH-HHHT---TCS-EEEETTSTTHHHHHHHHHCTTC
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhH-----HHH-HHHc---CCC-EEEeCCCchHHHHHHHHcCCCC
Confidence 57899999999999999999999999999999984321 111 1111 111 1245555433 333333335
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+|+||+|+|.. .....++.++..| ++|.++.
T Consensus 240 ~D~vi~~~G~~------------------~~~~~~~~l~~~G---~iv~~g~ 270 (351)
T 1yb5_A 240 IDIIIEMLANV------------------NLSKDLSLLSHGG---RVIVVGS 270 (351)
T ss_dssp EEEEEESCHHH------------------HHHHHHHHEEEEE---EEEECCC
T ss_pred cEEEEECCChH------------------HHHHHHHhccCCC---EEEEEec
Confidence 79999999831 1223455555555 8887763
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.7e-05 Score=72.26 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH---HHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK---LLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~~ 165 (421)
.+++|||+|++|+||..+++.+...|++|++++++.++. +.. . ... .. .+ .|..+.+ .+.+......
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~----~~~-~-~~g-a~-~~--~d~~~~~~~~~~~~~~~~~~ 235 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKL----RRA-K-ALG-AD-ET--VNYTHPDWPKEVRRLTGGKG 235 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHH----HHH-H-HHT-CS-EE--EETTSTTHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHH-H-hcC-CC-EE--EcCCcccHHHHHHHHhCCCC
Confidence 578999999999999999999999999999999843211 111 1 111 11 12 4665432 3444433335
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
+|+||+++|. .. ....++.++..| ++|.+++.
T Consensus 236 ~d~vi~~~g~-~~-----------------~~~~~~~l~~~G---~~v~~g~~ 267 (343)
T 2eih_A 236 ADKVVDHTGA-LY-----------------FEGVIKATANGG---RIAIAGAS 267 (343)
T ss_dssp EEEEEESSCS-SS-----------------HHHHHHHEEEEE---EEEESSCC
T ss_pred ceEEEECCCH-HH-----------------HHHHHHhhccCC---EEEEEecC
Confidence 7999999982 10 234556666655 89987764
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=4.3e-05 Score=72.28 Aligned_cols=102 Identities=21% Similarity=0.154 Sum_probs=64.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH---HHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK---LLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~ 164 (421)
..|++|||+||+|+||..+++.+...|++|++++++.+ ..+...+. -+... ..|..+.+ .+.+.. .-
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~-----~~~~~~~~---~g~~~-~~~~~~~~~~~~~~~~~-~~ 217 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAE-----KCRFLVEE---LGFDG-AIDYKNEDLAAGLKREC-PK 217 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHT---TCCSE-EEETTTSCHHHHHHHHC-TT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHH---cCCCE-EEECCCHHHHHHHHHhc-CC
Confidence 36889999999999999999999999999999998432 11111011 12211 23544433 233332 22
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 220 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v 220 (421)
.+|+||+|+|.. .....++.++..| ++|.++....
T Consensus 218 ~~d~vi~~~g~~------------------~~~~~~~~l~~~G---~iv~~G~~~~ 252 (336)
T 4b7c_A 218 GIDVFFDNVGGE------------------ILDTVLTRIAFKA---RIVLCGAISQ 252 (336)
T ss_dssp CEEEEEESSCHH------------------HHHHHHTTEEEEE---EEEECCCGGG
T ss_pred CceEEEECCCcc------------------hHHHHHHHHhhCC---EEEEEeeccc
Confidence 579999999831 1233444555554 8998877653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=69.33 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC---HHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND---AKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~~~~~~~~~ 164 (421)
..|++|||+||+|+||..+++.+...|++|++++++.+ ..+ ...... .. .+ .|..+ .+.+.+.....
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~-----~~~-~~~~~g-a~-~~--~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE-----KLK-IAKEYG-AE-YL--INASKEDILRQVLKFTNGK 216 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH-----HHH-HHHHTT-CS-EE--EETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHH-HHHHcC-Cc-EE--EeCCCchHHHHHHHHhCCC
Confidence 36789999999999999999999999999999998432 111 111111 11 12 23333 23444444444
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
.+|+||+++|... ....++.++..| ++|.++..
T Consensus 217 g~D~vid~~g~~~------------------~~~~~~~l~~~G---~iv~~G~~ 249 (334)
T 3qwb_A 217 GVDASFDSVGKDT------------------FEISLAALKRKG---VFVSFGNA 249 (334)
T ss_dssp CEEEEEECCGGGG------------------HHHHHHHEEEEE---EEEECCCT
T ss_pred CceEEEECCChHH------------------HHHHHHHhccCC---EEEEEcCC
Confidence 6799999998411 234556666655 88887653
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00011 Score=70.14 Aligned_cols=100 Identities=18% Similarity=0.127 Sum_probs=63.7
Q ss_pred CC--CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH---HHHHHhh
Q 043169 89 GG--MSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK---LLAKLFD 162 (421)
Q Consensus 89 ~~--k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~ 162 (421)
.+ ++|+|+||+|+||..+++.+...|+ +|++++++.+ ......... +.. ..+|..+.+ .+.+...
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~-----~~~~~~~~~---g~~-~~~d~~~~~~~~~~~~~~~ 228 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE-----KCILLTSEL---GFD-AAINYKKDNVAEQLRESCP 228 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHHTS---CCS-EEEETTTSCHHHHHHHHCT
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHH-----HHHHHHHHc---CCc-eEEecCchHHHHHHHHhcC
Confidence 56 8999999999999999999999999 9999998431 111111111 111 124555432 3333333
Q ss_pred ccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 163 AVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 163 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
. .+|+||+|+|.. .....++.++..| ++|.++...
T Consensus 229 ~-~~d~vi~~~G~~------------------~~~~~~~~l~~~G---~iv~~G~~~ 263 (357)
T 2zb4_A 229 A-GVDVYFDNVGGN------------------ISDTVISQMNENS---HIILCGQIS 263 (357)
T ss_dssp T-CEEEEEESCCHH------------------HHHHHHHTEEEEE---EEEECCCGG
T ss_pred C-CCCEEEECCCHH------------------HHHHHHHHhccCc---EEEEECCcc
Confidence 3 579999999831 1234455555554 899887654
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00023 Score=66.71 Aligned_cols=118 Identities=10% Similarity=0.071 Sum_probs=77.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHh-hcCCceEEE-EcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVI-EGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~-~~Dl~d~~~~~~~~~~~ 164 (421)
++.++|.|+|+ |.+|..++..|+..|. +|++++++.++.+.......... .......+. ..| . ++++++
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d---~----~a~~~a 76 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAND---Y----AAIEGA 76 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS---G----GGGTTC
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCC---H----HHHCCC
Confidence 56789999998 9999999999999998 99999997654322111111111 111122222 223 2 467777
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||..||....+ -....+.+..|..-...+.+.+.+.++...++.+|.
T Consensus 77 --DiVIiaag~p~k~--G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 77 --DVVIVTAGVPRKP--GMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp --SEEEECCSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred --CEEEEccCcCCCC--CCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 9999999864221 123446788899999999999988887657777664
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00015 Score=65.48 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC-------------------CCCChhHHHHHHHhhcCCceEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN-------------------NYYDPSLKKARKALLNNHGVFVI 147 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~v~~~ 147 (421)
+++++|+|.|+ |++|+++++.|++.|. ++++++++. ++.+...+.. ....+...+..+
T Consensus 29 l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l-~~~np~~~v~~~ 106 (249)
T 1jw9_B 29 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDAL-TRINPHIAITPV 106 (249)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHH-HHHCTTSEEEEE
T ss_pred HhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHH-HHHCCCcEEEEE
Confidence 46689999996 9999999999999997 888898865 1111111111 111122345566
Q ss_pred EcccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 148 ~~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
..++++ +.+.++++++ |+||.+... ...-..+.++|++.+. .+|+.+...
T Consensus 107 ~~~~~~-~~~~~~~~~~--DvVi~~~d~-----------------~~~~~~l~~~~~~~~~--p~i~~~~~g 156 (249)
T 1jw9_B 107 NALLDD-AELAALIAEH--DLVLDCTDN-----------------VAVRNQLNAGCFAAKV--PLVSGAAIR 156 (249)
T ss_dssp CSCCCH-HHHHHHHHTS--SEEEECCSS-----------------HHHHHHHHHHHHHHTC--CEEEEEEEB
T ss_pred eccCCH-hHHHHHHhCC--CEEEEeCCC-----------------HHHHHHHHHHHHHcCC--CEEEeeecc
Confidence 666653 5667777766 999987632 1223456677777774 577765543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.63 E-value=8.4e-05 Score=70.48 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=62.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH-HHHHHHhhccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA-KLLAKLFDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~~~~ 166 (421)
..|++|||+||+|+||..+++.+...|++|++++++.++.+ .... ... -.++..+ .+. +.+.+......+
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-----~~~~-~ga--~~v~~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE-----FVKS-VGA--DIVLPLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH-----HHHH-HTC--SEEEESS-TTHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH-----HHHh-cCC--cEEecCc-hhHHHHHHHHhCCCCc
Confidence 36889999999999999999999999999999998554221 1111 111 1223333 222 334444444357
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
|+||+++|... ....++.++..| ++|.++..
T Consensus 229 Dvvid~~g~~~------------------~~~~~~~l~~~G---~iv~~G~~ 259 (342)
T 4eye_A 229 DMVVDPIGGPA------------------FDDAVRTLASEG---RLLVVGFA 259 (342)
T ss_dssp EEEEESCC--C------------------HHHHHHTEEEEE---EEEEC---
T ss_pred eEEEECCchhH------------------HHHHHHhhcCCC---EEEEEEcc
Confidence 99999998421 224455555555 88877653
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00025 Score=63.20 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d 167 (421)
..++|+|.|+ |.+|+.+++.|.+.|+ |++++++.+ ...... .++.++.+|.+|.+.++++ ++++ |
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~---------~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a--d 73 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGSEV-FVLAEDENV---------RKKVLR-SGANFVHGDPTRVSDLEKANVRGA--R 73 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGG---------HHHHHH-TTCEEEESCTTCHHHHHHTTCTTC--S
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHH---------HHHHHh-cCCeEEEcCCCCHHHHHhcCcchh--c
Confidence 3468999998 9999999999999999 999988432 111112 4688999999999998877 6666 9
Q ss_pred EEEEccc
Q 043169 168 HVMHLAA 174 (421)
Q Consensus 168 ~vi~~Ag 174 (421)
.||.+.+
T Consensus 74 ~vi~~~~ 80 (234)
T 2aef_A 74 AVIVDLE 80 (234)
T ss_dssp EEEECCS
T ss_pred EEEEcCC
Confidence 9997654
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00012 Score=68.81 Aligned_cols=99 Identities=21% Similarity=0.137 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~~ 165 (421)
.|++|+|+||+|+||..+++.+...|++|++++++.++ .+... ... .. .+ .|..+. +.+.+......
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~-----~~~~~-~~G-a~-~~--~~~~~~~~~~~~~~~~~~~g 209 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEK-----AAHAK-ALG-AW-ET--IDYSHEDVAKRVLELTDGKK 209 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHH-----HHHHH-HHT-CS-EE--EETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHH-----HHHHH-HcC-CC-EE--EeCCCccHHHHHHHHhCCCC
Confidence 67899999999999999999999999999999984321 11111 111 11 12 244332 34444444446
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
+|+||+++|... ....++.+++.| ++|.++..
T Consensus 210 ~Dvvid~~g~~~------------------~~~~~~~l~~~G---~iv~~g~~ 241 (325)
T 3jyn_A 210 CPVVYDGVGQDT------------------WLTSLDSVAPRG---LVVSFGNA 241 (325)
T ss_dssp EEEEEESSCGGG------------------HHHHHTTEEEEE---EEEECCCT
T ss_pred ceEEEECCChHH------------------HHHHHHHhcCCC---EEEEEecC
Confidence 799999998411 123444555554 88887754
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.59 E-value=6.6e-05 Score=71.16 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=53.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~ 164 (421)
..|++|+|+||+|+||..+++.+...|++|++++++.++.+... . .. .. .+ .|..+. +.+.+.....
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-----~-lg-a~-~~--~~~~~~~~~~~~~~~~~~~ 212 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL-----R-LG-AA-YV--IDTSTAPLYETVMELTNGI 212 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-----H-HT-CS-EE--EETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-----h-CC-Cc-EE--EeCCcccHHHHHHHHhCCC
Confidence 36889999999999999999999989999999998765432221 1 11 11 12 244332 3444444444
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
.+|+||+++|.
T Consensus 213 g~Dvvid~~g~ 223 (340)
T 3gms_A 213 GADAAIDSIGG 223 (340)
T ss_dssp CEEEEEESSCH
T ss_pred CCcEEEECCCC
Confidence 67999999984
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00019 Score=68.29 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~~ 165 (421)
.+++|+|+||+|+||..+++.+...|++|++++++.++. +.. .... .. .. .|..+. +.+.+.. ...
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-----~~~-~~lG-a~-~~--~~~~~~~~~~~~~~~~-~~g 235 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKC-----EAC-ERLG-AK-RG--INYRSEDFAAVIKAET-GQG 235 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-----HHH-HHHT-CS-EE--EETTTSCHHHHHHHHH-SSC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-----HHH-HhcC-CC-EE--EeCCchHHHHHHHHHh-CCC
Confidence 678999999999999999999999999999999844211 111 1111 11 12 243332 3344433 336
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
+|+||+++|... ....++.++..| ++|.+++.
T Consensus 236 ~Dvvid~~g~~~------------------~~~~~~~l~~~G---~iv~~g~~ 267 (353)
T 4dup_A 236 VDIILDMIGAAY------------------FERNIASLAKDG---CLSIIAFL 267 (353)
T ss_dssp EEEEEESCCGGG------------------HHHHHHTEEEEE---EEEECCCT
T ss_pred ceEEEECCCHHH------------------HHHHHHHhccCC---EEEEEEec
Confidence 799999998411 223455555554 88877654
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00036 Score=65.45 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
...++|.|+|+ |.+|..++..|+.+|. +|+++|++.++.+...-..............+.. .|++ .++++
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~~----~~~~a- 88 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDYS----VTANS- 88 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSGG----GGTTE-
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCHH----HhCCC-
Confidence 56789999998 9999999999999986 8999998532211111111110000111122222 2322 46667
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||.+||.... .-.+..+.++.|..-...+.+.+.+..+...++.+|.
T Consensus 89 -DiVvi~aG~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 89 -KLVIITAGARQQ--EGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp -EEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred -CEEEEccCCCCC--CCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999997432 1234557899999999999999998877657777775
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00042 Score=67.30 Aligned_cols=74 Identities=24% Similarity=0.297 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d 167 (421)
.+++|+|.|+ |-+|+.+++.|.++|++|++++++.+ ........++.++.+|.++++.++++ ++++ |
T Consensus 3 ~~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~---------~v~~~~~~g~~vi~GDat~~~~L~~agi~~A--~ 70 (413)
T 3l9w_A 3 HGMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPD---------HIETLRKFGMKVFYGDATRMDLLESAGAAKA--E 70 (413)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHH---------HHHHHHHTTCCCEESCTTCHHHHHHTTTTTC--S
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH---------HHHHHHhCCCeEEEcCCCCHHHHHhcCCCcc--C
Confidence 4568999997 99999999999999999999998432 11112235788999999999998887 5555 9
Q ss_pred EEEEccc
Q 043169 168 HVMHLAA 174 (421)
Q Consensus 168 ~vi~~Ag 174 (421)
+||-+.+
T Consensus 71 ~viv~~~ 77 (413)
T 3l9w_A 71 VLINAID 77 (413)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 8887654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=8.1e-05 Score=70.63 Aligned_cols=78 Identities=22% Similarity=0.172 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH----HHHHHHhhc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA----KLLAKLFDA 163 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~----~~~~~~~~~ 163 (421)
..|++|||+||+|+||..+++.+...|++|++++++.+ ..+...... +... ..|..+. +.+.+...
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~-----~~~~~~~~~---g~~~-~~d~~~~~~~~~~~~~~~~- 223 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE-----KVDLLKTKF---GFDD-AFNYKEESDLTAALKRCFP- 223 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHHTS---CCSE-EEETTSCSCSHHHHHHHCT-
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHc---CCce-EEecCCHHHHHHHHHHHhC-
Confidence 36889999999999999999999999999999998432 111111111 2211 2355542 23333322
Q ss_pred cCCcEEEEcccc
Q 043169 164 VAFTHVMHLAAQ 175 (421)
Q Consensus 164 ~~~d~vi~~Ag~ 175 (421)
-.+|+||+|+|.
T Consensus 224 ~~~d~vi~~~g~ 235 (345)
T 2j3h_A 224 NGIDIYFENVGG 235 (345)
T ss_dssp TCEEEEEESSCH
T ss_pred CCCcEEEECCCH
Confidence 257999999973
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00027 Score=66.53 Aligned_cols=173 Identities=14% Similarity=0.089 Sum_probs=94.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHH--hhc-CCceEEEEcccCCHHHHHHHhhc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKA--LLN-NHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~~-~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
.+.|+|.|.|| |.+|..++..|+..|+ +|++++++.+..+......... ... ..++.. . +| +++++++
T Consensus 7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t---~d---~~ea~~~ 78 (331)
T 1pzg_A 7 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E---YS---YEAALTG 78 (331)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E---CS---HHHHHTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-e---CC---HHHHhCC
Confidence 34579999998 9999999999999998 9999999765443321111111 111 112221 1 33 3346777
Q ss_pred cCCcEEEEcccccCchhhcc----CCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCC
Q 043169 164 VAFTHVMHLAAQAGVRYAMQ----NPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPA 239 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~ 239 (421)
+ |+||..+|..... ..+ ........|..-...+.+.+.+......+|.+|-..-.- . . -.... ...++.
T Consensus 79 a--DiVi~a~g~p~~~-g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~-t-~-~~~~~-~~~~~~ 151 (331)
T 1pzg_A 79 A--DCVIVTAGLTKVP-GKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCM-V-K-VMCEA-SGVPTN 151 (331)
T ss_dssp C--SEEEECCSCSSCT-TCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHH-H-H-HHHHH-HCCCGG
T ss_pred C--CEEEEccCCCCCC-CcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHH-H-H-HHHHh-cCCChh
Confidence 7 9999999863211 110 234557778888888888888876553444443211000 0 0 00000 000111
Q ss_pred ChHHH-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 043169 240 SLYAA-TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPW 276 (421)
Q Consensus 240 ~~Y~~-sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~ 276 (421)
...+. +-+...++...+++..|++..-|+ ..|+|..
T Consensus 152 rviG~gt~LD~~R~~~~la~~lgv~~~~v~-~~v~G~H 188 (331)
T 1pzg_A 152 MICGMACMLDSGRFRRYVADALSVSPRDVQ-ATVIGTH 188 (331)
T ss_dssp GEEECCHHHHHHHHHHHHHHHHTSCGGGEE-CCEEBCS
T ss_pred cEEeccchHHHHHHHHHHHHHhCCCHHHce-EEEecCC
Confidence 22222 444444555556666677655555 3677753
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00044 Score=64.75 Aligned_cols=168 Identities=13% Similarity=0.092 Sum_probs=93.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+.++|.|+|+ |++|..++..|+..|. +|+++|++.++.+...............+.+.. .+ .++++++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~----~~a~~~a-- 75 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA---GD----YSDVKDC-- 75 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE---CC----HHHhCCC--
Confidence 4578999998 9999999999999987 899999987665532221111100001222221 12 3457777
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc-c--cCCCCCCCCCCCCCCCCCCChHH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS-V--YGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~-v--~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
|+||.++|....+ .......+..|+.....+.+.+.+.++...+|.+|.-. + +-.. ... ..++....+
T Consensus 76 DvVii~~g~p~k~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~-----k~s--~~p~~rviG 146 (318)
T 1y6j_A 76 DVIVVTAGANRKP--GETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQ-----KWS--GLPVGKVIG 146 (318)
T ss_dssp SEEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHH-----HHH--TCCTTTEEE
T ss_pred CEEEEcCCCCCCC--CcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHH-----HHc--CCCHHHEec
Confidence 9999999863211 11233567888888899999998877664666643311 0 0000 000 001222233
Q ss_pred H-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 043169 244 A-TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPW 276 (421)
Q Consensus 244 ~-sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~ 276 (421)
. +-+..-++...+++..|++..-++. .|.|..
T Consensus 147 ~gt~Ld~~r~~~~la~~lgv~~~~v~~-~v~G~H 179 (318)
T 1y6j_A 147 SGTVLDSIRFRYLLSEKLGVDVKNVHG-YIIGEH 179 (318)
T ss_dssp CTTHHHHHHHHHHHHTTTTCCTTTEEC-CEEBCS
T ss_pred cCCchHHHHHHHHHHHHhCCCHHHeEE-EEeccc
Confidence 3 3344445555566666776556665 677754
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00012 Score=67.08 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+++|+|+|+|+ |++|++++..|++.|++|++++|+.
T Consensus 116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 116 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCH
Confidence 367899999998 8999999999999999999999853
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00047 Score=64.48 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=77.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+.++|.|+|+ |.+|..++..|+..|. +|++++++.++.+.......... .......+... .| .++++++
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d----~~a~~~a-- 74 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT--ND----YKDLENS-- 74 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SC----GGGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc--CC----HHHHCCC--
Confidence 4578999995 9999999999999988 99999997653321111111100 01122333211 12 2467777
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||..||....+ -....+.+..|..-...+.+.+.+.++...++.+|-
T Consensus 75 DvVIi~ag~p~k~--G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 75 DVVIVTAGVPRKP--GMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp SEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CEEEEcCCcCCCC--CCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 9999999864211 123345678899999999999988887657776654
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00014 Score=66.76 Aligned_cols=80 Identities=21% Similarity=0.131 Sum_probs=53.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+++|+++|+|+ |++|++++..|++.|. +|++++|+.++.+...+..... ...+.+...++.+ +.+.++++
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~---~~~~~i~~~~~~~---l~~~l~~~- 195 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNA---VGREAVVGVDARG---IEDVIAAA- 195 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH---HTSCCEEEECSTT---HHHHHHHS-
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhh---cCCceEEEcCHHH---HHHHHhcC-
Confidence 478999999998 9999999999999998 6999999644322222111111 1223333344433 44566666
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
|+|||+-..
T Consensus 196 -DiVInaTp~ 204 (283)
T 3jyo_A 196 -DGVVNATPM 204 (283)
T ss_dssp -SEEEECSST
T ss_pred -CEEEECCCC
Confidence 999998754
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00026 Score=65.83 Aligned_cols=85 Identities=13% Similarity=0.209 Sum_probs=56.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+++|+++|+|+ |++|++++..|++.|. +|+++.|+.++.+.+. ..........+..+...++.+.+.+.+.+.++
T Consensus 145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~-~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~- 221 (312)
T 3t4e_A 145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAV-AFAKRVNENTDCVVTVTDLADQHAFTEALASA- 221 (312)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHH-HHHHHHHHHSSCEEEEEETTCHHHHHHHHHHC-
T ss_pred CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHH-HHHHHhhhccCcceEEechHhhhhhHhhccCc-
Confidence 468999999997 9999999999999998 8999999633211111 11111111123334445666655556666666
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
|+|||+-..
T Consensus 222 -DiIINaTp~ 230 (312)
T 3t4e_A 222 -DILTNGTKV 230 (312)
T ss_dssp -SEEEECSST
T ss_pred -eEEEECCcC
Confidence 999998654
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.46 E-value=4.3e-05 Score=70.67 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=49.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
++++|+++|||++ ++|++++..|++.| +|++++|+.++.+...+..... . .... .+.+|+.+. .+.+. +.
T Consensus 125 ~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~-~-~~~~-~~~~d~~~~---~~~~~--~~ 194 (287)
T 1nvt_A 125 RVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEK-L-NKKF-GEEVKFSGL---DVDLD--GV 194 (287)
T ss_dssp CCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHH-H-TCCH-HHHEEEECT---TCCCT--TC
T ss_pred CcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhh-c-cccc-ceeEEEeeH---HHhhC--CC
Confidence 4688999999985 99999999999999 9999998543221111111110 0 0000 112344442 22233 45
Q ss_pred cEEEEcccccC
Q 043169 167 THVMHLAAQAG 177 (421)
Q Consensus 167 d~vi~~Ag~~~ 177 (421)
|+||||+|...
T Consensus 195 DilVn~ag~~~ 205 (287)
T 1nvt_A 195 DIIINATPIGM 205 (287)
T ss_dssp CEEEECSCTTC
T ss_pred CEEEECCCCCC
Confidence 99999998743
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00036 Score=64.44 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=98.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALL-NNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|.|+|+ |.+|..++..|+..|. +|++++++.+..+........... ......+.-. +| .++++++ |
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~~a~~~a--D 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----YSLLKGS--E 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----GGGGTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----HHHhCCC--C
Confidence 68999999 9999999999999997 899999865432211111111110 1112222211 12 3467777 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLYAA 244 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y~~ 244 (421)
+||..||....+ -.+....+..|..-...+.+.+.+.++...++.+|.-. .|-. .... ..++....+.
T Consensus 72 iVViaag~~~kp--G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~-----~k~~--g~p~~rviG~ 142 (294)
T 1oju_A 72 IIVVTAGLARKP--GMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM-----WKES--GKPRNEVFGM 142 (294)
T ss_dssp EEEECCCCCCCS--SCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH-----HHHS--CCCTTSEEEC
T ss_pred EEEECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHH-----HHhc--CCCHHHEeec
Confidence 999999974211 12334678889888999999999888766777777521 0100 0000 0122333444
Q ss_pred -HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 043169 245 -TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWG 277 (421)
Q Consensus 245 -sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~ 277 (421)
+-+...++-..++ +.|++... -+.|+|...
T Consensus 143 gt~LD~~R~~~~la-~l~v~~~~--~~~V~G~Hg 173 (294)
T 1oju_A 143 GNQLDSQRLKERLY-NAGARNIR--RAWIIGEHG 173 (294)
T ss_dssp SHHHHHHHHHHHHH-HTTCBSCC--CCCEEBCSS
T ss_pred ccccHHHHHHHHHH-HhCCCccC--ceEEEecCC
Confidence 3455555566666 67777665 556777643
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00048 Score=67.78 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
..|++|+|+||+|+||...++.+...|++|++++++
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~ 254 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSS 254 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 368899999999999999999999999999999873
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00052 Score=63.99 Aligned_cols=119 Identities=19% Similarity=0.122 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC--CCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN--NYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~--~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
++.++|.|+|+ |.+|..++..|+..|+ +|++++++. ...+......... ........+... +|. +.+++
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t--~d~----~a~~~ 78 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT--SDY----ADTAD 78 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE--SCG----GGGTT
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc--CCH----HHhCC
Confidence 46789999997 9999999999999999 999999852 1111110000000 011112222211 121 35666
Q ss_pred cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+ |+||.+||....+ -.+....+..|..-...+.+.+.+.++...++.+|.
T Consensus 79 a--DvVIiaag~p~kp--g~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 79 S--DVVVITAGIARKP--GMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp C--SEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred C--CEEEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 6 9999999974321 123356788899999999999988877657777664
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00075 Score=62.85 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=75.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|.|+|+ |.+|..++..|+..|. +|++++++.++.+......... ......+.+...| + .+.++++ |
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~~a--D 71 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTEDS--D 71 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C----HHHhCCC--C
Confidence 68999997 9999999999999886 8999999765332211111111 1111233333222 1 2456667 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+||.+||....+ -.+....+..|..-...+.+.+.+.++...++.+|.
T Consensus 72 vVii~ag~~~kp--G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 72 VCIITAGLPRSP--GMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp EEEECCCC---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred EEEECCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 999999974211 123457788999999999999998887657776664
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=8.7e-05 Score=74.55 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=57.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+++|+++|||| |++|++++..|++.|++|++++|+.++. +..... . ...+ + ++.| +.++ ....+
T Consensus 361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a----~~la~~-~-~~~~--~--~~~d---l~~~-~~~~~ 425 (523)
T 2o7s_A 361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERA----LELAEA-I-GGKA--L--SLTD---LDNY-HPEDG 425 (523)
T ss_dssp -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHH----HHHHHH-T-TC-C--E--ETTT---TTTC---CCS
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHH-c-CCce--e--eHHH---hhhc-cccCc
Confidence 357889999999 7999999999999999999999853211 111111 1 1112 1 2222 1111 11136
Q ss_pred cEEEEcccccCc------h---hhccCCchhhhhhHHHH-HHHHHHHHhcC
Q 043169 167 THVMHLAAQAGV------R---YAMQNPHSYVHSNIAGL-VTLLEACKSAN 207 (421)
Q Consensus 167 d~vi~~Ag~~~~------~---~~~~~~~~~~~~N~~g~-~~l~~~~~~~~ 207 (421)
|+||||+|.... + ....+....+++|+.+. ..+++.+++.|
T Consensus 426 DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a~~~G 476 (523)
T 2o7s_A 426 MVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESG 476 (523)
T ss_dssp EEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHHHTTT
T ss_pred eEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHHHHCC
Confidence 999999997321 1 11223345677777652 24555555555
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00053 Score=64.33 Aligned_cols=169 Identities=12% Similarity=0.096 Sum_probs=95.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+.++|.|+|+ |.+|..++..|+..+. +|+++|++.++.+...............+.+.. | + .++++++
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~----~~a~~~a- 77 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--E----YSDAKDA- 77 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGGGC-
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCC-
Confidence 35679999999 9999999999998875 899999844222111111111000112333332 2 2 3457777
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc-c--cCCCCCCCCCCCCCCCCCCChH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS-V--YGLNENVPFSEADRTDQPASLY 242 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~-v--~g~~~~~~~~e~~~~~~~~~~Y 242 (421)
|+||..||....+ .......+..|..-...+.+.+.+.++...+|.+|--. + |-.. ... ..++....
T Consensus 78 -DvVii~ag~~~k~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~-----k~s--~~p~~rvi 147 (326)
T 2zqz_A 78 -DLVVITAGAPQKP--GETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATW-----KLS--GFPKNRVV 147 (326)
T ss_dssp -SEEEECCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHH-----HHH--CCCGGGEE
T ss_pred -CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH-----HHc--CCCHHHEE
Confidence 9999999874221 12233567888888899999988887766777765411 0 0000 000 00111222
Q ss_pred HH-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 043169 243 AA-TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPW 276 (421)
Q Consensus 243 ~~-sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~ 276 (421)
+. +-+..-++...+++..|+...-|+ ..|+|..
T Consensus 148 G~gt~LD~~R~~~~la~~lgv~~~~v~-~~v~G~H 181 (326)
T 2zqz_A 148 GSGTSLDTARFRQSIAEMVNVDARSVH-AYIMGEH 181 (326)
T ss_dssp ECTTHHHHHHHHHHHHHHHTCCGGGEE-CCEEBSS
T ss_pred EccccchHHHHHHHHHHHhCCChhheE-EEEeccc
Confidence 22 333344455555666677666666 6777753
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00066 Score=63.49 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++.++|.|+|+ |.+|..++..|+.+| .+|+++|++.++.+.......... .....+.+.. | + .++++++
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~~~a 75 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDCHDA 75 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHhCCC
Confidence 35679999999 999999999999888 489999985432221111111111 1112333332 2 2 3457777
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||..||....+ .......+..|..-...+.+.+.+..+...+|.+|.
T Consensus 76 --DvVvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 124 (317)
T 3d0o_A 76 --DLVVICAGAAQKP--GETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN 124 (317)
T ss_dssp --SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred --CEEEECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 9999999874321 122235678888888889998888877656666543
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00059 Score=63.83 Aligned_cols=168 Identities=11% Similarity=0.099 Sum_probs=93.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+.++|.|+|+ |.+|..++..|+..+. +|+++|++.++.+...............+.+.. | + .++++++
T Consensus 4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~a-- 73 (318)
T 1ez4_A 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--E----YSDCKDA-- 73 (318)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCC--
Confidence 3478999998 9999999999998885 899999844322211111111100112333332 2 2 3457777
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc-c--cCCCCCCCCCCCCCCCCCCChHH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS-V--YGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~-v--~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
|+||..||....+ .......+..|..-...+.+.+.+.++...+|.+|--. + |-.. ... ..++....+
T Consensus 74 DvVii~ag~~~~~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~-----k~s--~~p~~rviG 144 (318)
T 1ez4_A 74 DLVVITAGAPQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATW-----KFS--GFPKERVIG 144 (318)
T ss_dssp SEEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHH-----HHH--CCCGGGEEE
T ss_pred CEEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHH-----HHc--CCCHHHEEe
Confidence 9999999874321 12233567889999999999999888776777765411 0 0000 000 001112222
Q ss_pred H-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 043169 244 A-TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPW 276 (421)
Q Consensus 244 ~-sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~ 276 (421)
. +-+..-++...+++..|+...-|+ ..|+|..
T Consensus 145 ~gt~LD~~R~~~~la~~lgv~~~~v~-~~v~G~H 177 (318)
T 1ez4_A 145 SGTSLDSSRLRVALGKQFNVDPRSVD-AYIMGEH 177 (318)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCGGGEE-CCEESSS
T ss_pred ccccchHHHHHHHHHHHhCcChhHEE-EEEeccc
Confidence 2 333344555555666677666666 6777753
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00063 Score=64.54 Aligned_cols=99 Identities=10% Similarity=0.009 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~~ 165 (421)
.+++|+|+||+|+||...++.+...|++|++++++.++.+. . .. .. .. .+ .|..+. +.+.+......
T Consensus 164 g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~----~-~~-~G-a~-~~--~~~~~~~~~~~v~~~~~~~g 233 (349)
T 3pi7_A 164 GEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIAL----L-KD-IG-AA-HV--LNEKAPDFEATLREVMKAEQ 233 (349)
T ss_dssp CCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHH----H-HH-HT-CS-EE--EETTSTTHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----H-HH-cC-CC-EE--EECCcHHHHHHHHHHhcCCC
Confidence 34799999999999999999999999999999985543211 1 11 11 11 12 233332 33444444346
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
+|+||+++|.. .....+++++..| ++|.+++.
T Consensus 234 ~D~vid~~g~~------------------~~~~~~~~l~~~G---~iv~~G~~ 265 (349)
T 3pi7_A 234 PRIFLDAVTGP------------------LASAIFNAMPKRA---RWIIYGRL 265 (349)
T ss_dssp CCEEEESSCHH------------------HHHHHHHHSCTTC---EEEECCCS
T ss_pred CcEEEECCCCh------------------hHHHHHhhhcCCC---EEEEEecc
Confidence 79999999841 1234455555544 89987754
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0012 Score=61.82 Aligned_cols=117 Identities=12% Similarity=0.076 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEE-EcccCCHHHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVI-EGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~~~~~~~~~~ 165 (421)
..++|.|+|+ |.+|..++..|+..|. +|+++|++.++.+.................+. ..|.. .++++
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~-------~~~da- 90 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS-------VSAGS- 90 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC-------SCSSC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH-------HhCCC-
Confidence 5689999998 9999999999999996 89999985432221111111111111112222 23432 15666
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||-.||....+ -.+..+.+..|..-...+.+.+.+.++...++.+|.
T Consensus 91 -DiVIitaG~p~kp--G~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 91 -KLVVITAGARQQE--GESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp -SEEEECCSCCCCS--SCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred -CEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 9999999974321 233457788999989999999988877656776664
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00057 Score=65.24 Aligned_cols=101 Identities=21% Similarity=0.129 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC--H-HHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND--A-KLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~-~~~~~~~~~~ 164 (421)
..|++|+|+||+|+||..+++.+...|++|++++++.+ ..+.. .... .. .++ |..+ . +.+.+.. ..
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~-----~~~~~-~~~G-a~-~~~--~~~~~~~~~~~~~~~-~~ 230 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDE-----KSAFL-KSLG-CD-RPI--NYKTEPVGTVLKQEY-PE 230 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHH-----HHHHH-HHTT-CS-EEE--ETTTSCHHHHHHHHC-TT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHH-----HHHHH-HHcC-Cc-EEE--ecCChhHHHHHHHhc-CC
Confidence 36789999999999999999999999999999998432 11111 1111 11 122 3332 2 2233322 22
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 220 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v 220 (421)
.+|+||+++|.. .....+++++..| ++|.+++...
T Consensus 231 g~D~vid~~g~~------------------~~~~~~~~l~~~G---~iv~~g~~~~ 265 (362)
T 2c0c_A 231 GVDVVYESVGGA------------------MFDLAVDALATKG---RLIVIGFISG 265 (362)
T ss_dssp CEEEEEECSCTH------------------HHHHHHHHEEEEE---EEEECCCGGG
T ss_pred CCCEEEECCCHH------------------HHHHHHHHHhcCC---EEEEEeCCCC
Confidence 579999999831 1234566666655 8998887543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=7.9e-05 Score=65.39 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|+|+||+|.+|+++++.|++.|++|++++|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5799999999999999999999999999999854
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00061 Score=64.59 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH---HHHHHhhc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK---LLAKLFDA 163 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~ 163 (421)
..+++|+|+|++|+||..+++.+... |++|++++++.++ .+... ... .. .+ .|..+.+ .+.++...
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~-----~~~~~-~~g-~~-~~--~~~~~~~~~~~~~~~~~~ 238 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEA-----VEAAK-RAG-AD-YV--INASMQDPLAEIRRITES 238 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHH-----HHHHH-HHT-CS-EE--EETTTSCHHHHHHHHTTT
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHH-----HHHHH-HhC-CC-EE--ecCCCccHHHHHHHHhcC
Confidence 36789999999999999999999999 9999999984321 11111 111 11 11 3444433 34444431
Q ss_pred cCCcEEEEcccc
Q 043169 164 VAFTHVMHLAAQ 175 (421)
Q Consensus 164 ~~~d~vi~~Ag~ 175 (421)
-.+|+||+++|.
T Consensus 239 ~~~d~vi~~~g~ 250 (347)
T 1jvb_A 239 KGVDAVIDLNNS 250 (347)
T ss_dssp SCEEEEEESCCC
T ss_pred CCceEEEECCCC
Confidence 157999999984
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00031 Score=67.04 Aligned_cols=76 Identities=14% Similarity=0.084 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.++++|+|+|+ |++|..+++.|...|++|++++|+.++. +... ... ...+.. +..+.+.+.+.+.++ |
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~----~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~~--D 232 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERL----SYLE-TLF-GSRVEL---LYSNSAEIETAVAEA--D 232 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHH-HHH-GGGSEE---EECCHHHHHHHHHTC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHH----HHHH-Hhh-CceeEe---eeCCHHHHHHHHcCC--C
Confidence 56789999999 9999999999999999999999854211 1111 111 112222 223556677777766 9
Q ss_pred EEEEcccc
Q 043169 168 HVMHLAAQ 175 (421)
Q Consensus 168 ~vi~~Ag~ 175 (421)
+||++++.
T Consensus 233 vVI~~~~~ 240 (361)
T 1pjc_A 233 LLIGAVLV 240 (361)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999986
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0023 Score=58.70 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=70.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCC------------------CCChhHHHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNN------------------YYDPSLKKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~------------------~~~~~~~~~~~~~~~~~~v~~~~ 148 (421)
+++++|+|.|+ |++|+++++.|++.|. ++.++|.+.= +.+.+ .+......+.-.++.+.
T Consensus 34 L~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa-~~~L~~iNP~v~v~~~~ 111 (292)
T 3h8v_A 34 IRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAA-EHTLRNINPDVLFEVHN 111 (292)
T ss_dssp GGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHH-HHHHHHHCTTSEEEEEC
T ss_pred HhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHH-HHHHHhhCCCcEEEEec
Confidence 67789999997 9999999999999995 7888887541 11111 11111222334566777
Q ss_pred cccCCHHHHHHHhhc---------cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 149 GDINDAKLLAKLFDA---------VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~---------~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
.++++.+.+.++++. .++|+||++.- |+..-..+-++|.+.+. .+|+.+.
T Consensus 112 ~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D-----------------n~~~R~~in~~c~~~~~--Pli~~gv 170 (292)
T 3h8v_A 112 YNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD-----------------NFEARMTINTACNELGQ--TWMESGV 170 (292)
T ss_dssp CCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS-----------------SHHHHHHHHHHHHHHTC--CEEEEEE
T ss_pred ccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc-----------------chhhhhHHHHHHHHhCC--CEEEeee
Confidence 788877777776631 24599997652 23333456677888875 5666543
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00094 Score=62.12 Aligned_cols=171 Identities=17% Similarity=0.092 Sum_probs=98.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-C--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR-G--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~-g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|.|+||+|.||+.++..|+.+ + .+++++++.. ..+ -........ ...+.+....-++ ..+.++++ |
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~--G~a~Dl~~~-~~~~~v~~~~~~~---~~~~~~~a--D 71 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTP--GVAVDLSHI-PTAVKIKGFSGED---ATPALEGA--D 71 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THH--HHHHHHHTS-CSSEEEEEECSSC---CHHHHTTC--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-Cch--hHHHHhhCC-CCCceEEEecCCC---cHHHhCCC--C
Confidence 58999999999999999999876 5 5799998854 211 111111111 1122222110011 23456667 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc---ccCCCCCCCCCCCCCCCCCCChHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS---VYGLNENVPFSEADRTDQPASLYAA 244 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~~~~~Y~~ 244 (421)
+||-.||.... .-.+..+.++.|..-...+.+.+.+.++...++.+|.-. +|-... .+..... .++....+.
T Consensus 72 ivii~ag~~rk--pG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~--~~k~sg~-~p~~rv~G~ 146 (312)
T 3hhp_A 72 VVLISAGVARK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAE--VLKKAGV-YDKNKLFGV 146 (312)
T ss_dssp EEEECCSCSCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHH--HHHHTTC-CCTTSEEEC
T ss_pred EEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHH--HHHHcCC-CCcceEEEE
Confidence 99999996421 112345788999999999999998887765777776411 110000 0000000 022233334
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPW 276 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~ 276 (421)
+-+...++...+++..|++..-++ +.|+|..
T Consensus 147 ~~LD~~R~~~~la~~lgv~~~~v~-~~V~G~H 177 (312)
T 3hhp_A 147 TTLDIIRSNTFVAELKGKQPGEVE-VPVIGGH 177 (312)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGCC-CCEEECS
T ss_pred echhHHHHHHHHHHHhCcChhHcc-eeEEecc
Confidence 434445555566666677766666 6777764
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00053 Score=64.91 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-HHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-AKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~d 167 (421)
.|++|||+||+|+||..+++.+...|++|+++ ++.+ ..+...+ . +...+. +-.+ .+.+.+......+|
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~-----~~~~~~~-l---Ga~~i~-~~~~~~~~~~~~~~~~g~D 218 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGS-----DLEYVRD-L---GATPID-ASREPEDYAAEHTAGQGFD 218 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHH-----HHHHHHH-H---TSEEEE-TTSCHHHHHHHHHTTSCEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHH-----HHHHHHH-c---CCCEec-cCCCHHHHHHHHhcCCCce
Confidence 67899999999999999999999999999988 4221 1111111 1 222322 2222 23444444444679
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+||+++|.. .....++.++..| ++|.++.
T Consensus 219 ~vid~~g~~------------------~~~~~~~~l~~~G---~iv~~g~ 247 (343)
T 3gaz_A 219 LVYDTLGGP------------------VLDASFSAVKRFG---HVVSCLG 247 (343)
T ss_dssp EEEESSCTH------------------HHHHHHHHEEEEE---EEEESCC
T ss_pred EEEECCCcH------------------HHHHHHHHHhcCC---eEEEEcc
Confidence 999999831 1234555555555 8887654
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00082 Score=64.25 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.|.+|+|+|+ |+||..+++.+...|++|++++++.++. + ...+.. +... ..|..+.+.+.++.. .+|+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~----~-~~~~~l---Ga~~-v~~~~~~~~~~~~~~--~~D~ 254 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKK----E-EALKNF---GADS-FLVSRDQEQMQAAAG--TLDG 254 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGH----H-HHHHTS---CCSE-EEETTCHHHHHHTTT--CEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHH----H-HHHHhc---CCce-EEeccCHHHHHHhhC--CCCE
Confidence 6889999996 9999999999999999999999854321 1 111111 1211 246667777766654 4599
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
||+++|.... ....++.++..| ++|.+++.
T Consensus 255 vid~~g~~~~-----------------~~~~~~~l~~~G---~iv~~g~~ 284 (366)
T 1yqd_A 255 IIDTVSAVHP-----------------LLPLFGLLKSHG---KLILVGAP 284 (366)
T ss_dssp EEECCSSCCC-----------------SHHHHHHEEEEE---EEEECCCC
T ss_pred EEECCCcHHH-----------------HHHHHHHHhcCC---EEEEEccC
Confidence 9999985310 123455565555 89988764
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0013 Score=61.30 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=69.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|+|.|+|+ |.+|..++..|+..|+ +|+++|++.++.+.......... ......++... +| . +.++++ |+
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d---~-~a~~~a--D~ 73 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NN---Y-ADTANS--DV 73 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SC---G-GGGTTC--SE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC--CC---H-HHHCCC--CE
Confidence 68999998 9999999999999996 89999986543321111110000 01112222220 22 2 346667 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
||.++|....+ ..........|......+.+.+.+.++. .+|.+.|
T Consensus 74 Vi~a~g~p~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~-a~vi~~t 119 (309)
T 1ur5_A 74 IVVTSGAPRKP--GMSREDLIKVNADITRACISQAAPLSPN-AVIIMVN 119 (309)
T ss_dssp EEECCCC----------CHHHHHHHHHHHHHHHHHGGGCTT-CEEEECC
T ss_pred EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEcC
Confidence 99999864311 1122355778888888999999888755 4444444
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0013 Score=60.85 Aligned_cols=77 Identities=9% Similarity=0.019 Sum_probs=52.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+++|+|+|+|+ |++|+.++..|++.|+ +|++++|+.++. +..... ... ... ++.+.+++.+.+.++
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka----~~la~~-~~~-~~~----~~~~~~~~~~~~~~a- 205 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKA----ERLVRE-GDE-RRS----AYFSLAEAETRLAEY- 205 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHH----HHHHHH-SCS-SSC----CEECHHHHHHTGGGC-
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHH----HHHHHH-hhh-ccC----ceeeHHHHHhhhccC-
Confidence 467899999997 8999999999999998 899999843211 111111 111 100 222345666777766
Q ss_pred CcEEEEccccc
Q 043169 166 FTHVMHLAAQA 176 (421)
Q Consensus 166 ~d~vi~~Ag~~ 176 (421)
|+|||+.+..
T Consensus 206 -DivIn~t~~~ 215 (297)
T 2egg_A 206 -DIIINTTSVG 215 (297)
T ss_dssp -SEEEECSCTT
T ss_pred -CEEEECCCCC
Confidence 9999999764
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00073 Score=63.83 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~ 164 (421)
..|++|+|+|+ |+||..+++.+...|++|++++++.+ ..+.. ... +... ..|..+. +.+.+...
T Consensus 163 ~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~-----~~~~~-~~l---Ga~~-~~d~~~~~~~~~~~~~~~-- 229 (339)
T 1rjw_A 163 KPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDE-----KLELA-KEL---GADL-VVNPLKEDAAKFMKEKVG-- 229 (339)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHH-----HHHHH-HHT---TCSE-EECTTTSCHHHHHHHHHS--
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHH-HHC---CCCE-EecCCCccHHHHHHHHhC--
Confidence 36789999999 88999999999999999999998432 11111 111 2221 2355532 23333332
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
.+|+||+++|.. ......++.++..| ++|.+++.
T Consensus 230 ~~d~vid~~g~~-----------------~~~~~~~~~l~~~G---~~v~~g~~ 263 (339)
T 1rjw_A 230 GVHAAVVTAVSK-----------------PAFQSAYNSIRRGG---ACVLVGLP 263 (339)
T ss_dssp SEEEEEESSCCH-----------------HHHHHHHHHEEEEE---EEEECCCC
T ss_pred CCCEEEECCCCH-----------------HHHHHHHHHhhcCC---EEEEeccc
Confidence 569999999841 11334556666655 88877653
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0029 Score=59.55 Aligned_cols=175 Identities=17% Similarity=0.103 Sum_probs=102.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHH--HHHHhhcCCc-eEEEEcccCCHHHH
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-------GVVGLDNFNNYYDPSLKK--ARKALLNNHG-VFVIEGDINDAKLL 157 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~--~~~~~~~~~~-v~~~~~Dl~d~~~~ 157 (421)
++..+|.|+||+|+||+.++-.|+.... ++.++|..... ...+- ........+. ...+.. +| .
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~--~~~~Gva~DL~~~~~~~~~~~~~~--~~---~ 94 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPAL--KALAGVEAELEDCAFPLLDKVVVT--AD---P 94 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGH--HHHHHHHHHHHHTTCTTEEEEEEE--SC---H
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCcc--ccchhhhhhhhhcCccCCCcEEEc--CC---h
Confidence 5566999999999999999999887642 68888873210 11111 1112222121 112211 12 3
Q ss_pred HHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEcccc---ccCCCCCCCCCCCC
Q 043169 158 AKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSS---VYGLNENVPFSEAD 233 (421)
Q Consensus 158 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~---v~g~~~~~~~~e~~ 233 (421)
.++++++ |+||-.||...-+ -....+.++.|..-.+.+.+.+.+... ..+++.+|.-. +|-. +....
T Consensus 95 ~~a~~~a--dvVvi~aG~prkp--GmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~-----~~~~~ 165 (345)
T 4h7p_A 95 RVAFDGV--AIAIMCGAFPRKA--GMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALIL-----LKSAQ 165 (345)
T ss_dssp HHHTTTC--SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH-----HHHTT
T ss_pred HHHhCCC--CEEEECCCCCCCC--CCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHH-----HHHcc
Confidence 4678888 9999999974321 234457899999999999999887643 22555566421 1100 00000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
-..++...-+.+.+..-++-..++++.|+....|+-..|+|...+
T Consensus 166 g~~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~ 210 (345)
T 4h7p_A 166 GKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS 210 (345)
T ss_dssp TCSCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST
T ss_pred CCCCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC
Confidence 011233334455666667777777778888777776667776443
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00027 Score=65.70 Aligned_cols=73 Identities=23% Similarity=0.231 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-HHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-AKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~d 167 (421)
.|++|+|+||+|++|..+++.+...|++|++++++.++.+.. + . . +... ..|..+ .+. .+.+. .+|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~----~-~-~---ga~~-~~~~~~~~~~-~~~~~--~~d 191 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP----L-A-L---GAEE-AATYAEVPER-AKAWG--GLD 191 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH----H-H-T---TCSE-EEEGGGHHHH-HHHTT--SEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----H-h-c---CCCE-EEECCcchhH-HHHhc--Cce
Confidence 678999999999999999999999999999999865433221 1 1 1 1111 135555 333 33334 459
Q ss_pred EEEEcccc
Q 043169 168 HVMHLAAQ 175 (421)
Q Consensus 168 ~vi~~Ag~ 175 (421)
+||+ +|.
T Consensus 192 ~vid-~g~ 198 (302)
T 1iz0_A 192 LVLE-VRG 198 (302)
T ss_dssp EEEE-CSC
T ss_pred EEEE-CCH
Confidence 9999 874
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0016 Score=59.93 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=75.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|.|+|+ |+||+.++..|+.++ .+++++|.+++..+...-...... ........... .|+ +.+++. |
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~--~d~----~~~~~a--D 71 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADY----SLLKGS--E 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEE--SCG----GGGTTC--S
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecC--CCH----HHhCCC--C
Confidence 68999996 999999999999887 479999985422111111111100 01122233222 122 246666 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+||-.||....+ -.+..+.++.|..-.+.+.+.+.++++...++.+|.
T Consensus 72 vVvitAG~prkp--GmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 72 IIVVTAGLARKP--GMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCCCCCS--SSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEEecCCCCCC--CCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 999999975321 234567889999999999999999987766666665
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0022 Score=59.95 Aligned_cols=116 Identities=22% Similarity=0.201 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..++|.|+|+ |.+|..++..|+..|. +|+++|++.+..+.......... .....+.+.. | + .+.++++
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~----~~al~~a- 75 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--D----YDDCRDA- 75 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--C----GGGTTTC-
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--c----HHHhCCC-
Confidence 4579999998 9999999999988874 89999986431111111111110 0111344442 1 2 2346667
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|+||.+++....+. ......+..|..-...+.+.+.+..+...++.+|
T Consensus 76 -DvViia~~~~~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 76 -DLVVICAGANQKPG--ETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp -SEEEECCSCCCCTT--TCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred -CEEEEcCCCCCCCC--CCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 99999998754221 2234567778877888888888877654555554
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00095 Score=62.05 Aligned_cols=110 Identities=22% Similarity=0.265 Sum_probs=66.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcC----CceEEEEcccCCHHHHHHHhhcc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNN----HGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
|+|.|+|+ |.+|..++..|+..|+ +|++++++.++. +......... ....+.. .+. +.++++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~----~~~~~~l~~~~~~~~~~~i~~---~~~----~a~~~a 68 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRA----QAEAEDIAHAAPVSHGTRVWH---GGH----SELADA 68 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHH----HHHHHHHTTSCCTTSCCEEEE---ECG----GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHH----HHHHHhhhhhhhhcCCeEEEE---CCH----HHhCCC
Confidence 57999998 9999999999999998 999999854211 1111111100 1222222 232 346666
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|+||.+++....+ .......+..|......+.+.+.+......+|.+|
T Consensus 69 --DvVIi~~~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 69 --QVVILTAGANQKP--GESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp --SEEEECC--------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred --CEEEEcCCCCCCC--CCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 9999999863211 12233567788888888888888776554555544
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0011 Score=60.59 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKK-RGDGVVGLDN 122 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~-~g~~V~~~~r 122 (421)
+.++|.|+|++|.+|+.+++.+.+ .|+++++++.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d 38 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALE 38 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEEC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 457999999999999999999875 4788875543
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=60.77 Aligned_cols=115 Identities=20% Similarity=0.194 Sum_probs=74.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|+|.|+|+ |.+|..++..|+..+ .+|+++|++.++.+...............+.+.. | + .++++++ |+
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~a--D~ 70 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--S----YGDLEGA--RA 70 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGTTE--EE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--C----HHHhCCC--CE
Confidence 57999998 999999999999987 5899999854222111111110000012333332 2 2 3457777 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
||..||....+ .......+..|..-...+.+.+.+.++...+|.+|-
T Consensus 71 Vii~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 71 VVLAAGVAQRP--GETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp EEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEECCCCCCCC--CcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 99999874321 112235678888888899999888877767777654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0017 Score=61.40 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC--HHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND--AKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~~~~ 166 (421)
.|.+|+|+||+|.||...++.+...|++|++++++.++ .+.. ...... .++ |..+ .+.+.+. ..-.+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~-----~~~~-~~lGa~--~vi--~~~~~~~~~~~~~-~~~g~ 218 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNET-----IEWT-KKMGAD--IVL--NHKESLLNQFKTQ-GIELV 218 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHH-----HHHH-HHHTCS--EEE--CTTSCHHHHHHHH-TCCCE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHH-----HHHH-HhcCCc--EEE--ECCccHHHHHHHh-CCCCc
Confidence 67899999999999999999999999999999884321 1111 112111 122 2222 2334443 33357
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|+||+++|.. ......+++++..| ++|.++
T Consensus 219 Dvv~d~~g~~-----------------~~~~~~~~~l~~~G---~iv~~~ 248 (346)
T 3fbg_A 219 DYVFCTFNTD-----------------MYYDDMIQLVKPRG---HIATIV 248 (346)
T ss_dssp EEEEESSCHH-----------------HHHHHHHHHEEEEE---EEEESS
T ss_pred cEEEECCCch-----------------HHHHHHHHHhccCC---EEEEEC
Confidence 9999998731 11234555666655 887654
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0027 Score=57.23 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCC------CC---------ChhHHHHH---HHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNN------YY---------DPSLKKAR---KALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~------~~---------~~~~~~~~---~~~~~~~~v~~~~ 148 (421)
+++++|+|.|+ |++|+++++.|+..|. ++.++|.+.- +. ....+... ....+...+..+.
T Consensus 26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 104 (251)
T 1zud_1 26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ 104 (251)
T ss_dssp HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 56789999997 8899999999999996 6777766431 00 01111111 1111223445555
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
.+++ .+.+.++++++ |+||++.. |...-..+-++|.+.+. .+|+.+....+|
T Consensus 105 ~~~~-~~~~~~~~~~~--DvVi~~~d-----------------~~~~r~~l~~~~~~~~~--p~i~~~~~g~~G 156 (251)
T 1zud_1 105 QRLT-GEALKDAVARA--DVVLDCTD-----------------NMATRQEINAACVALNT--PLITASAVGFGG 156 (251)
T ss_dssp SCCC-HHHHHHHHHHC--SEEEECCS-----------------SHHHHHHHHHHHHHTTC--CEEEEEEEBTEE
T ss_pred ccCC-HHHHHHHHhcC--CEEEECCC-----------------CHHHHHHHHHHHHHhCC--CEEEEeccccce
Confidence 5554 45677888877 99998753 12223456667777764 677776654433
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0027 Score=60.81 Aligned_cols=77 Identities=19% Similarity=0.124 Sum_probs=55.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+.+++|+|+|+ |.||..+++.+...|++|++.+|+.++ .+... ... ...+ ..+..+.+++.+.+.++
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~----l~~~~-~~~-g~~~---~~~~~~~~~l~~~l~~a-- 232 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDK----LRQLD-AEF-CGRI---HTRYSSAYELEGAVKRA-- 232 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHH-HHT-TTSS---EEEECCHHHHHHHHHHC--
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHH----HHHHH-Hhc-CCee---EeccCCHHHHHHHHcCC--
Confidence 368999999998 999999999999999999999984321 11111 111 1222 23445667788888877
Q ss_pred cEEEEcccc
Q 043169 167 THVMHLAAQ 175 (421)
Q Consensus 167 d~vi~~Ag~ 175 (421)
|+||++++.
T Consensus 233 DvVi~~~~~ 241 (377)
T 2vhw_A 233 DLVIGAVLV 241 (377)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999999875
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0011 Score=65.35 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
..|.+|+|+||+|.||...++.+...|++|++++++
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~ 262 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSS 262 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 367899999999999999999999999999999873
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0016 Score=61.46 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=66.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCCcE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAFTH 168 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~ 168 (421)
.++++|.|+ |-+|+.+++.|.++|+ |++++++.+. .+ ....++.++.+|.+|++.++++ ++++ |.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~---------~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a--~~ 180 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVR---------KK-VLRSGANFVHGDPTRVSDLEKANVRGA--RA 180 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGH---------HH-HHHTTCEEEESCTTSHHHHHHTCSTTE--EE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhh---------hh-HHhCCcEEEEeCCCCHHHHHhcChhhc--cE
Confidence 568999997 9999999999999999 9999874421 11 1235789999999999999887 6666 88
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEE
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIV 213 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV 213 (421)
||-+.+. + +.|+ ..+..+++.++..++|
T Consensus 181 vi~~~~~--------d-----~~n~----~~~~~ar~~~~~~~ii 208 (336)
T 1lnq_A 181 VIVDLES--------D-----SETI----HCILGIRKIDESVRII 208 (336)
T ss_dssp EEECCSS--------H-----HHHH----HHHHHHHTTCTTSEEE
T ss_pred EEEcCCc--------c-----HHHH----HHHHHHHHHCCCCeEE
Confidence 8876531 0 2233 3555667776543555
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.001 Score=61.59 Aligned_cols=38 Identities=32% Similarity=0.328 Sum_probs=32.5
Q ss_pred CCCCE-EEEEcCC------------------ChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 88 SGGMS-VLVTGAA------------------GFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 88 ~~~k~-vlITG~s------------------G~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
+.|++ ||||+|. |-.|.++|++++++|++|+.+.+..+
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 57777 9998764 66999999999999999999998554
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0038 Score=59.22 Aligned_cols=176 Identities=12% Similarity=0.047 Sum_probs=100.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--c---EEEEeCCCCCCChhHHHHHHHh--hcCCceEEEEcccCCHHHHHHHh
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD--G---VVGLDNFNNYYDPSLKKARKAL--LNNHGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~--~---V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~ 161 (421)
+.++|.|+||.|.||++++-.|+..+. + |.+.+.+.+..+...+....+. ...+-..-+ .+.+ .-.+.+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v--~i~~--~~y~~~ 106 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREV--SIGI--DPYEVF 106 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEE--EEES--CHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCc--EEec--CCHHHh
Confidence 567899999999999999999998863 2 7665543332222222222221 111111111 1221 124567
Q ss_pred hccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhc-CCCCeEEEEcccc---ccCCCCCCCCCCCCCCCC
Q 043169 162 DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA-NPQPSIVWASSSS---VYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 162 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~-~~~~riV~~SS~~---v~g~~~~~~~~e~~~~~~ 237 (421)
+++ |+||-.||.... .-.+..+.++.|..-...+.+.+.+. +....|+.+|.-. .|-. +.....+ +
T Consensus 107 ~da--DvVVitag~prk--pG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia-----~k~sg~~-~ 176 (375)
T 7mdh_A 107 EDV--DWALLIGAKPRG--PGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC-----LKNAPDI-P 176 (375)
T ss_dssp TTC--SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH-----HHTCTTS-C
T ss_pred CCC--CEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH-----HHHcCCC-C
Confidence 777 999999997431 11334578899999999999988875 5554777776521 1100 0000001 1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 043169 238 PASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR 278 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~ 278 (421)
+...-+.+-+...++-..++++.|+....++--.|+|...+
T Consensus 177 ~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd 217 (375)
T 7mdh_A 177 AKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST 217 (375)
T ss_dssp GGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST
T ss_pred ccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCCC
Confidence 12223345566666667777777886666654467776443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00071 Score=66.70 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHh-hccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLF-DAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~-~~~~~d 167 (421)
+.|+|+|.|+ |-+|+++++.|.++|++|++++++.+ ..+.. ...-++.++.+|-++++.++++- +++ |
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~----~~~~~----~~~~~~~~i~Gd~~~~~~L~~Agi~~a--d 70 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGD----RLREL----QDKYDLRVVNGHASHPDVLHEAGAQDA--D 70 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHH----HHHHH----HHHSSCEEEESCTTCHHHHHHHTTTTC--S
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH----HHHHH----HHhcCcEEEEEcCCCHHHHHhcCCCcC--C
Confidence 5689999998 99999999999999999999998432 11111 12246889999999999998873 444 8
Q ss_pred EEEEc
Q 043169 168 HVMHL 172 (421)
Q Consensus 168 ~vi~~ 172 (421)
.+|-.
T Consensus 71 ~~ia~ 75 (461)
T 4g65_A 71 MLVAV 75 (461)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 88754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0025 Score=60.32 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhcc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAV 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~ 164 (421)
.|.+|+|+|+ |.||..+++.+...|+ +|++++++.+ ..+... .... . .+ .|..+. +.+.++....
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~-----~~~~~~-~~Ga-~-~~--~~~~~~~~~~~v~~~~~g~ 235 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDF-----RRELAK-KVGA-D-YV--INPFEEDVVKEVMDITDGN 235 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHH-----HHHHHH-HHTC-S-EE--ECTTTSCHHHHHHHHTTTS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHH-HhCC-C-EE--ECCCCcCHHHHHHHHcCCC
Confidence 5789999999 9999999999999999 9999988432 111111 1111 1 12 244332 2344443333
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
.+|+||+++|.. ......++.++..| ++|.+++.
T Consensus 236 g~D~vid~~g~~-----------------~~~~~~~~~l~~~G---~iv~~g~~ 269 (348)
T 2d8a_A 236 GVDVFLEFSGAP-----------------KALEQGLQAVTPAG---RVSLLGLY 269 (348)
T ss_dssp CEEEEEECSCCH-----------------HHHHHHHHHEEEEE---EEEECCCC
T ss_pred CCCEEEECCCCH-----------------HHHHHHHHHHhcCC---EEEEEccC
Confidence 579999999841 11234556666555 89888763
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0076 Score=57.32 Aligned_cols=102 Identities=19% Similarity=0.100 Sum_probs=63.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHh----h
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLF----D 162 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~----~ 162 (421)
..|.+|||+|+ |.+|...++.+...|++ |++++++.+ +.+ ..+.. ...+..+..|-.+.+.+.+.+ .
T Consensus 178 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~~-~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 178 RLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEG-----RLK-FAKEI-CPEVVTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHH-----HHH-HHHHH-CTTCEEEECCSCCHHHHHHHHHHHTS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH-----HHH-HHHHh-chhcccccccccchHHHHHHHHHHhC
Confidence 36789999998 99999999999889997 888887432 111 12222 234444445544444444333 2
Q ss_pred ccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 163 AVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 163 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
...+|+||+++|... .....++.++..| ++|.++.
T Consensus 250 g~g~Dvvid~~g~~~-----------------~~~~~~~~l~~~G---~iv~~G~ 284 (363)
T 3m6i_A 250 GIEPAVALECTGVES-----------------SIAAAIWAVKFGG---KVFVIGV 284 (363)
T ss_dssp SCCCSEEEECSCCHH-----------------HHHHHHHHSCTTC---EEEECCC
T ss_pred CCCCCEEEECCCChH-----------------HHHHHHHHhcCCC---EEEEEcc
Confidence 336799999998410 1234455555554 8887764
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00052 Score=62.73 Aligned_cols=71 Identities=10% Similarity=0.040 Sum_probs=51.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+++|+++|+|+ |++|++++..|++.|+ +|++++|+.++.+... ..+.. ...+++.++++++
T Consensus 114 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la----------~~~~~-----~~~~~~~~~~~~a- 176 (277)
T 3don_A 114 GIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWS----------LNINK-----INLSHAESHLDEF- 176 (277)
T ss_dssp TGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCC----------SCCEE-----ECHHHHHHTGGGC-
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH----------Hhccc-----ccHhhHHHHhcCC-
Confidence 367899999997 8999999999999998 8999999654322211 11221 2345666767766
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
|+|||+-..
T Consensus 177 -DiVInaTp~ 185 (277)
T 3don_A 177 -DIIINTTPA 185 (277)
T ss_dssp -SEEEECCC-
T ss_pred -CEEEECccC
Confidence 999998653
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0039 Score=59.43 Aligned_cols=100 Identities=21% Similarity=0.142 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-HHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-AKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~d 167 (421)
.|.+|||+| +|.||...++.+...|++|++++++.+ ..+. ...... -.++.-+-.+ .+.+.++..+..+|
T Consensus 189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~-----~~~~-~~~lGa--~~vi~~~~~~~~~~v~~~~~g~g~D 259 (363)
T 3uog_A 189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSRE-----KLDR-AFALGA--DHGINRLEEDWVERVYALTGDRGAD 259 (363)
T ss_dssp TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHH-----HHHH-HHHHTC--SEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCch-----hHHH-HHHcCC--CEEEcCCcccHHHHHHHHhCCCCce
Confidence 578999999 899999999999999999999997432 1111 111211 1222222122 23455555544679
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
+||+++|... ....++.++..| ++|.++..
T Consensus 260 ~vid~~g~~~------------------~~~~~~~l~~~G---~iv~~G~~ 289 (363)
T 3uog_A 260 HILEIAGGAG------------------LGQSLKAVAPDG---RISVIGVL 289 (363)
T ss_dssp EEEEETTSSC------------------HHHHHHHEEEEE---EEEEECCC
T ss_pred EEEECCChHH------------------HHHHHHHhhcCC---EEEEEecC
Confidence 9999998321 234556666655 88888754
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00083 Score=64.19 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC--HHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND--AKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~~~ 165 (421)
++|++|+|+|+ |+||..+++.+...|++|++++++.. .....+.... . +...+ | .+ .+.+.+ .. ..
T Consensus 179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~--~~~~~~~~~~-~---ga~~v--~-~~~~~~~~~~-~~-~~ 246 (366)
T 2cdc_A 179 LNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREP--TEVEQTVIEE-T---KTNYY--N-SSNGYDKLKD-SV-GK 246 (366)
T ss_dssp STTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCC--CHHHHHHHHH-H---TCEEE--E-CTTCSHHHHH-HH-CC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCcc--chHHHHHHHH-h---CCcee--c-hHHHHHHHHH-hC-CC
Confidence 45899999999 99999999999999999999998641 0011111111 1 23333 4 43 223433 22 35
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
+|+||+++|.
T Consensus 247 ~d~vid~~g~ 256 (366)
T 2cdc_A 247 FDVIIDATGA 256 (366)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCCC
Confidence 6999999985
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00013 Score=59.76 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.+++|+|.|+ |.+|..+++.|.+.|++|++.+|+.++. +...... +.... +..+ +.++++++ |+
T Consensus 20 ~~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~----~~~a~~~----~~~~~--~~~~---~~~~~~~~--Di 83 (144)
T 3oj0_A 20 GGNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHV----RAFAEKY----EYEYV--LIND---IDSLIKNN--DV 83 (144)
T ss_dssp CCCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHH----HHHHHHH----TCEEE--ECSC---HHHHHHTC--SE
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHH----HHHHHHh----CCceE--eecC---HHHHhcCC--CE
Confidence 3889999996 9999999999999999999999853211 1111111 12221 2233 44556666 99
Q ss_pred EEEccccc
Q 043169 169 VMHLAAQA 176 (421)
Q Consensus 169 vi~~Ag~~ 176 (421)
||++.+..
T Consensus 84 vi~at~~~ 91 (144)
T 3oj0_A 84 IITATSSK 91 (144)
T ss_dssp EEECSCCS
T ss_pred EEEeCCCC
Confidence 99988753
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0046 Score=57.80 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=71.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEE-cccCCHHHHHHHhhccCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIE-GDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~-~Dl~d~~~~~~~~~~~~~ 166 (421)
.++|.|+|+ |.+|..++..|+..|+ +|+++|++.++.+.......... .......+.. .| . ++++++
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d------~-~al~~a-- 73 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT------Y-DDLAGA-- 73 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECC------G-GGGTTC--
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCC------H-HHhCCC--
Confidence 468999998 9999999999999998 99999987654332111111100 0111222222 23 2 356777
Q ss_pred cEEEEcccccCchhhcc----CCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 167 THVMHLAAQAGVRYAMQ----NPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||..+|..... ... ........|..-...+.+.+.+......+|.+|-
T Consensus 74 D~Vi~a~g~p~k~-g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 127 (322)
T 1t2d_A 74 DVVIVTAGFTKAP-GKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127 (322)
T ss_dssp SEEEECCSCSSCT-TCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CEEEEeCCCCCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999999863211 111 0234567777777888888877765545555543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00098 Score=62.60 Aligned_cols=73 Identities=29% Similarity=0.224 Sum_probs=45.8
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH--HHHHHhhccCCcEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK--LLAKLFDAVAFTHV 169 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--~~~~~~~~~~~d~v 169 (421)
+|+|+||+|++|...++.+...|++|++++++.++.+.. + . ... . .+ .|..+.+ .+.++ ....+|+|
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~----~-~-lGa-~-~~--i~~~~~~~~~~~~~-~~~~~d~v 220 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL----R-V-LGA-K-EV--LAREDVMAERIRPL-DKQRWAAA 220 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH----H-H-TTC-S-EE--EECC---------C-CSCCEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----H-H-cCC-c-EE--EecCCcHHHHHHHh-cCCcccEE
Confidence 799999999999999999999999999999865432211 1 1 111 1 12 2444331 22222 22257999
Q ss_pred EEcccc
Q 043169 170 MHLAAQ 175 (421)
Q Consensus 170 i~~Ag~ 175 (421)
|+++|.
T Consensus 221 id~~g~ 226 (328)
T 1xa0_A 221 VDPVGG 226 (328)
T ss_dssp EECSTT
T ss_pred EECCcH
Confidence 999984
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.013 Score=55.42 Aligned_cols=78 Identities=19% Similarity=0.118 Sum_probs=49.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcc--cCCHHHHHHHhh---c
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD--INDAKLLAKLFD---A 163 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D--l~d~~~~~~~~~---~ 163 (421)
.|.+|||+|+ |.+|...++.+...|++|++++++.+ ..+.. ..... . .++..+ -...+.+.+... .
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~-----~~~~~-~~lGa-~-~~~~~~~~~~~~~~i~~~~~~~~g 238 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPR-----RLEVA-KNCGA-D-VTLVVDPAKEEESSIIERIRSAIG 238 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHH-HHTTC-S-EEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHH-----HHHHH-HHhCC-C-EEEcCcccccHHHHHHHHhccccC
Confidence 6789999997 99999999998889999999887432 11111 11111 1 222211 222445655554 2
Q ss_pred cCCcEEEEcccc
Q 043169 164 VAFTHVMHLAAQ 175 (421)
Q Consensus 164 ~~~d~vi~~Ag~ 175 (421)
..+|+||+++|.
T Consensus 239 ~g~D~vid~~g~ 250 (352)
T 1e3j_A 239 DLPNVTIDCSGN 250 (352)
T ss_dssp SCCSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 357999999974
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0066 Score=56.92 Aligned_cols=115 Identities=14% Similarity=0.178 Sum_probs=71.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHH--hh-cCCceEEEEcccCCHHHHHHHhhccC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKA--LL-NNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.++|.|.|| |.+|..++..|+..|+ +|++.+++.+..+......... .. ...++.. ..| . ++++++
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d------~-~al~~a- 83 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG-ENN------Y-EYLQNS- 83 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-ESC------G-GGGTTC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE-CCC------H-HHHCCC-
Confidence 368999998 9999999999999998 9999999765443211111111 11 1122222 123 2 346666
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||-.+|....+ . .........|..-...+.+.+.+..+...+|.+|-
T Consensus 84 -D~VI~avg~p~k~-g-~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 84 -DVVIITAGVPRKP-N-MTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp -SEEEECCSCCCCT-T-CCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred -CEEEEcCCCCCCC-C-CchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999999863211 1 12234566777778888888877665535555543
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0018 Score=59.18 Aligned_cols=37 Identities=24% Similarity=0.176 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+++|+|+|+|+ |++|++++..|++.|++|++++|+.
T Consensus 116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~ 152 (272)
T 1p77_A 116 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTF 152 (272)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 367899999998 8999999999999999999999954
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0038 Score=59.73 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
..|++|+|+||+|+||..+++.+...|++|+++++ .+ ..+. . .... .. .+ .|..+.+..+++.+...+|
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~----~~~~-~-~~lG-a~-~v--~~~~~~~~~~~~~~~~g~D 250 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QD----ASEL-V-RKLG-AD-DV--IDYKSGSVEEQLKSLKPFD 250 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GG----GHHH-H-HHTT-CS-EE--EETTSSCHHHHHHTSCCBS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hH----HHHH-H-HHcC-CC-EE--EECCchHHHHHHhhcCCCC
Confidence 36789999999999999999999999999998874 21 1111 1 1111 11 12 2444433333333323579
Q ss_pred EEEEcccc
Q 043169 168 HVMHLAAQ 175 (421)
Q Consensus 168 ~vi~~Ag~ 175 (421)
+||+++|.
T Consensus 251 ~vid~~g~ 258 (375)
T 2vn8_A 251 FILDNVGG 258 (375)
T ss_dssp EEEESSCT
T ss_pred EEEECCCC
Confidence 99999984
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0088 Score=55.79 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHH--hh-cCCceEEEEcccCCHHHHHHHhhcc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKA--LL-NNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~-~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.|+|.|.|+ |.+|..++..|+..|+ +|++++++.+..+......... .. ...++.. ..|. +.++++
T Consensus 3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~-------~a~~~a 73 (317)
T 2ewd_A 3 ERRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TDDY-------ADISGS 73 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESCG-------GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CCCH-------HHhCCC
Confidence 3578999998 9999999999999998 9999999764333211011000 00 0112221 1222 345666
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||-++|....+ .....+.+..|......+++.+.+......+|.+|.
T Consensus 74 --DiVi~avg~p~~~--g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 74 --DVVIITASIPGRP--KDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp --SEEEECCCCSSCC--SSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred --CEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 9999999864321 112223455667667777777776655435655554
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.005 Score=58.13 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhcc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAV 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~ 164 (421)
.|.+|+|+|+ |++|..+++.+...|+ +|++++++.+ +.+....- .. ...|..+. +.+.++. ..
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~---------~~~~~~~l-a~-~v~~~~~~~~~~~~~~~~-~~ 230 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPY---------RLAFARPY-AD-RLVNPLEEDLLEVVRRVT-GS 230 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHH---------HHGGGTTT-CS-EEECTTTSCHHHHHHHHH-SS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH---------HHHHHHHh-HH-hccCcCccCHHHHHHHhc-CC
Confidence 5789999999 9999999999988999 9999998432 11111111 11 11344332 2333333 33
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
.+|+||+++|.. ......++.++..| ++|.++.
T Consensus 231 g~D~vid~~g~~-----------------~~~~~~~~~l~~~G---~iv~~g~ 263 (343)
T 2dq4_A 231 GVEVLLEFSGNE-----------------AAIHQGLMALIPGG---EARILGI 263 (343)
T ss_dssp CEEEEEECSCCH-----------------HHHHHHHHHEEEEE---EEEECCC
T ss_pred CCCEEEECCCCH-----------------HHHHHHHHHHhcCC---EEEEEec
Confidence 579999999841 11234556666555 8887765
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0024 Score=60.37 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-HHHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKR--GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-AKLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~ 165 (421)
.|.+|||+|+ |.||...++.+... |++|++++++.+ ..+.... .... .+ .|..+ .+.+.++.....
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~-----~~~~~~~-lGa~--~v--i~~~~~~~~~~~~~~g~g 238 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKK-----HRDFALE-LGAD--YV--SEMKDAESLINKLTDGLG 238 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHH-----HHHHHHH-HTCS--EE--ECHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHH-----HHHHHHH-hCCC--EE--eccccchHHHHHhhcCCC
Confidence 5789999999 99999999998888 999999987432 1111111 1111 11 23333 333444433335
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+|+||+++|.. ......++.++..| ++|.++.
T Consensus 239 ~D~vid~~g~~-----------------~~~~~~~~~l~~~G---~iv~~g~ 270 (344)
T 2h6e_A 239 ASIAIDLVGTE-----------------ETTYNLGKLLAQEG---AIILVGM 270 (344)
T ss_dssp EEEEEESSCCH-----------------HHHHHHHHHEEEEE---EEEECCC
T ss_pred ccEEEECCCCh-----------------HHHHHHHHHhhcCC---EEEEeCC
Confidence 79999999841 11334556666555 8887664
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0081 Score=58.53 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=62.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-C---cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC--CHH-HHHHHhhc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG-D---GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN--DAK-LLAKLFDA 163 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d~~-~~~~~~~~ 163 (421)
++|+|.| .|+||+.++..|+++. . +|++++......+. . +. .++.+...+++ |.+ .+.+++++
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~-~-----~~---~g~~~~~~~Vdadnv~~~l~aLl~~ 83 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDV-A-----QQ---YGVSFKLQQITPQNYLEVIGSTLEE 83 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCH-H-----HH---HTCEEEECCCCTTTHHHHTGGGCCT
T ss_pred CCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhH-H-----hh---cCCceeEEeccchhHHHHHHHHhcC
Confidence 5699999 5999999999999974 4 78888865543211 1 11 13456666664 443 45667776
Q ss_pred cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
. |+|||.+-... ...++++|.++|+ .+|-++
T Consensus 84 ~--DvVIN~s~~~~------------------~l~Im~acleaGv--~YlDTa 114 (480)
T 2ph5_A 84 N--DFLIDVSIGIS------------------SLALIILCNQKGA--LYINAA 114 (480)
T ss_dssp T--CEEEECCSSSC------------------HHHHHHHHHHHTC--EEEESS
T ss_pred C--CEEEECCcccc------------------CHHHHHHHHHcCC--CEEECC
Confidence 3 99998653221 3468999999996 555444
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0061 Score=56.94 Aligned_cols=115 Identities=13% Similarity=0.097 Sum_probs=69.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|+|.|.|+ |.+|..++..|++.|+ +|++++++.+..+.................+.. +|. +.++++ |+
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~d~----~~~~~a--Dv 70 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA---GDY----ADLKGS--DV 70 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE---CCG----GGGTTC--SE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe---CCH----HHhCCC--CE
Confidence 57999998 9999999999999998 999999854322111110000000001122221 232 245666 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
||-+++....+ ..........|......+++.+.+......+|.+|.
T Consensus 71 Viiav~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tN 117 (319)
T 1a5z_A 71 VIVAAGVPQKP--GETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117 (319)
T ss_dssp EEECCCCCCCS--SCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEccCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 99999864311 111234566777778888888877655445665543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0055 Score=57.00 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=70.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeCCCCCCChhHHHHHHHhh--cCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR--GDGVVGLDNFNNYYDPSLKKARKALL--NNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
|+|.|.|+ |.+|..++..|+.. |++|++++++.++.+...... .... ......+... +|.+ + ++++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l-~~~~~~~~~~~~i~~t--~d~~---~-l~~a-- 70 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDM-YESGPVGLFDTKVTGS--NDYA---D-TANS-- 70 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHH-HTTHHHHTCCCEEEEE--SCGG---G-GTTC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhH-HhhhhcccCCcEEEEC--CCHH---H-HCCC--
Confidence 57999998 99999999999985 799999999764332111000 0000 0112222110 2322 2 5566
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||-+++....+ .......+..|..-...+.+.+.+......+|.+|.
T Consensus 71 DvViiav~~p~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN 119 (310)
T 1guz_A 71 DIVIITAGLPRKP--GMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (310)
T ss_dssp SEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred CEEEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 9999999753211 112335667888888888888887765556666643
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.022 Score=52.70 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
..++|.|+|| |.+|..++..|+.+|. +|+++|++.+....+.... . ...+++.. ..|. +.++++
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~--~-~~~~~i~~-t~d~-------~~l~~a-- 78 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLE--I-FNLPNVEI-SKDL-------SASAHS-- 78 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHH--H-HTCTTEEE-ESCG-------GGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHh--h-hcCCCeEE-eCCH-------HHHCCC--
Confidence 4478999997 9999999999999998 9999999775222222222 1 22234444 2332 346777
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||..||...+ -......+..|..-...+.+.+.+..+...++.+|-
T Consensus 79 D~Vi~aag~~~p---G~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 79 KVVIFTVNSLGS---SQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp SEEEECCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CEEEEcCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 999999987321 122345677788888888888887766546666654
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0018 Score=61.23 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-----C-cEEEEeCCCCCCChhHHHHHHHhhcC-CceEEEEcccCCHHHHHHHh
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG-----D-GVVGLDNFNNYYDPSLKKARKALLNN-HGVFVIEGDINDAKLLAKLF 161 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g-----~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~~~~~~ 161 (421)
++++|.|.||+|.+|+.+++.|.+++ . +|+.+.+..+..+.... .. ..... ..+.+. |+ +.+. +
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~-~~-~~l~~~~~~~~~--~~-~~~~----~ 78 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGE-HH-PHLTPLAHRVVE--PT-EAAV----L 78 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGG-TC-TTCGGGTTCBCE--EC-CHHH----H
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhh-hc-ccccccceeeec--cC-CHHH----h
Confidence 34789999999999999999999987 3 67776543221111000 00 00000 122222 22 2322 4
Q ss_pred hccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 162 DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 162 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
+++ |+||.+.|... +..+++.+ +.|. ++|-+|+..
T Consensus 79 ~~~--DvVf~alg~~~------------------s~~~~~~~-~~G~--~vIDlSa~~ 113 (352)
T 2nqt_A 79 GGH--DAVFLALPHGH------------------SAVLAQQL-SPET--LIIDCGADF 113 (352)
T ss_dssp TTC--SEEEECCTTSC------------------CHHHHHHS-CTTS--EEEECSSTT
T ss_pred cCC--CEEEECCCCcc------------------hHHHHHHH-hCCC--EEEEECCCc
Confidence 445 99999987532 34566777 6674 899999865
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.012 Score=54.94 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=67.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHH-HHhhc-CCceEEEEcccCCHHHHHHHhhcc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKAR-KALLN-NHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~-~~~~~-~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.|+|.|.|+ |.+|..++..|++.|+ +|++++|+.+..+.. ... ..... .....+... ++. +.++++
T Consensus 6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~~--~~~----~~~~~a 76 (319)
T 1lld_A 6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAE--VLDMQHGSSFYPTVSIDGS--DDP----EICRDA 76 (319)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHH--HHHHHHTGGGSTTCEEEEE--SCG----GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHH--HHHHHhhhhhcCCeEEEeC--CCH----HHhCCC
Confidence 4578999998 9999999999999998 999999853211100 011 11110 012222221 122 234555
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|+||-+++....+ ..+....+..|......+++.+++.+....||.++
T Consensus 77 --D~Vii~v~~~~~~--g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~ 124 (319)
T 1lld_A 77 --DMVVITAGPRQKP--GQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 124 (319)
T ss_dssp --SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred --CEEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 9999999753211 12233566777777777888777665443444443
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.013 Score=54.32 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=74.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEE-cccCCHHHHHHHhhccCCcE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIE-GDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~-~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+|.|+|+ |.+|..++..|+..|. +|+++|++.++.+.......... .......+.. .| . ++++++ |+
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d---~----~a~~~a--D~ 70 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNS---Y----EDMRGS--DI 70 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESC---G----GGGTTC--SE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCC---H----HHhCCC--CE
Confidence 4789998 9999999999998887 79999997654432111111110 1112333332 33 2 357777 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
||..||....+ .......+..|..-...+.+.+.+..+...+|.+|-
T Consensus 71 Vi~~ag~~~k~--G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 71 VLVTAGIGRKP--GMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp EEECCSCCCCS--SCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEEeCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 99999874321 123345678888888889998888776557776654
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0064 Score=57.44 Aligned_cols=111 Identities=18% Similarity=0.143 Sum_probs=69.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC--------------CCCChhHHHHH----HHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN--------------NYYDPSLKKAR----KALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~--------------~~~~~~~~~~~----~~~~~~~~v~~~~ 148 (421)
+.+.+|+|.|+ |++|.++++.|+..|. +++++|.+. +..-..+.... ....+...+..+.
T Consensus 34 L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 112 (346)
T 1y8q_A 34 LRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT 112 (346)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence 56789999996 9999999999999996 788886532 00001111111 1112233456666
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
.++.+ ...++++++ |+||.+.. |...-..+-++|.+.++ .+|..++.+.+|
T Consensus 113 ~~~~~--~~~~~~~~~--dvVv~~~d-----------------~~~~r~~ln~~~~~~~i--p~i~~~~~G~~G 163 (346)
T 1y8q_A 113 EDIEK--KPESFFTQF--DAVCLTCC-----------------SRDVIVKVDQICHKNSI--KFFTGDVFGYHG 163 (346)
T ss_dssp SCGGG--CCHHHHTTC--SEEEEESC-----------------CHHHHHHHHHHHHHTTC--EEEEEEEEBTEE
T ss_pred cccCc--chHHHhcCC--CEEEEcCC-----------------CHHHHHHHHHHHHHcCC--CEEEEeecccEE
Confidence 66653 234566665 99998642 23334457778888874 788877766555
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.003 Score=60.12 Aligned_cols=37 Identities=16% Similarity=0.009 Sum_probs=32.7
Q ss_pred CC-CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 89 GG-MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~-k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.| .+|||+||+|.+|...++.+...|++|++++++.+
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~ 203 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP 203 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 56 89999999999999999988888999999987544
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0069 Score=53.09 Aligned_cols=66 Identities=17% Similarity=0.025 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|+|.|.| .|.+|..+++.|++.|++|++.+|+.+ ..+.....++... + ..++++++ |+
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~---------~~~~~~~~g~~~~-----~---~~~~~~~~--Dv 86 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPK---------RTARLFPSAAQVT-----F---QEEAVSSP--EV 86 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHH---------HHHHHSBTTSEEE-----E---HHHHTTSC--SE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHcCCcee-----c---HHHHHhCC--CE
Confidence 457899999 699999999999999999999998432 1111222244432 2 34556655 99
Q ss_pred EEEccc
Q 043169 169 VMHLAA 174 (421)
Q Consensus 169 vi~~Ag 174 (421)
||.+..
T Consensus 87 Vi~av~ 92 (215)
T 2vns_A 87 IFVAVF 92 (215)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 998765
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0069 Score=55.12 Aligned_cols=37 Identities=22% Similarity=0.106 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN 124 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~ 124 (421)
.+++|+++|+|+ |++|+.++..|++.|. +|++++|+.
T Consensus 117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~ 154 (272)
T 3pwz_A 117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDM 154 (272)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 468999999997 8999999999999995 899999854
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0086 Score=55.99 Aligned_cols=36 Identities=36% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~ 124 (421)
+++++|+|.|+ |++|+++++.|+..|. +++++|++.
T Consensus 32 L~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 32 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 56789999997 9999999999999996 678887754
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0081 Score=57.56 Aligned_cols=99 Identities=13% Similarity=0.173 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC--CHHH----HHHHh
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN--DAKL----LAKLF 161 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d~~~----~~~~~ 161 (421)
.|.+|||+| +|.+|...++.+...| .+|++++++.+ ..+ ....... -.++ |.. +.++ +.++.
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~~-~~~~lGa--~~vi--~~~~~~~~~~~~~v~~~~ 263 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPN-----RLK-LAEEIGA--DLTL--NRRETSVEERRKAIMDIT 263 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHH-----HHH-HHHHTTC--SEEE--ETTTSCHHHHHHHHHHHT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHH-----HHH-HHHHcCC--cEEE--eccccCcchHHHHHHHHh
Confidence 578999999 8999999999998899 59999997432 111 1111111 1222 333 1233 33333
Q ss_pred hccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 162 DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 162 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
....+|+||+++|... .....++.++..| ++|.++..
T Consensus 264 ~g~g~Dvvid~~g~~~-----------------~~~~~~~~l~~~G---~iv~~G~~ 300 (380)
T 1vj0_A 264 HGRGADFILEATGDSR-----------------ALLEGSELLRRGG---FYSVAGVA 300 (380)
T ss_dssp TTSCEEEEEECSSCTT-----------------HHHHHHHHEEEEE---EEEECCCC
T ss_pred CCCCCcEEEECCCCHH-----------------HHHHHHHHHhcCC---EEEEEecC
Confidence 3335799999998421 1234555666555 88877653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0098 Score=56.81 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-----HHHHHHHhh
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-----AKLLAKLFD 162 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~~~~~~~ 162 (421)
.|.+|||+|+ |.+|...++.+...|+ +|++++++.++. +.... . +... ..|..+ .+.+.++..
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-----~~~~~-l---Ga~~-vi~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKF-----EKAKV-F---GATD-FVNPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH-----HHHHH-T---TCCE-EECGGGCSSCHHHHHHHHHT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHH-----HHHHH-h---CCce-EEeccccchhHHHHHHHHhC
Confidence 5789999996 9999999999988998 799988754321 11111 1 1111 124332 223444444
Q ss_pred ccCCcEEEEcccc
Q 043169 163 AVAFTHVMHLAAQ 175 (421)
Q Consensus 163 ~~~~d~vi~~Ag~ 175 (421)
. .+|+||+++|.
T Consensus 261 ~-g~D~vid~~g~ 272 (374)
T 1cdo_A 261 G-GVDFSLECVGN 272 (374)
T ss_dssp S-CBSEEEECSCC
T ss_pred C-CCCEEEECCCC
Confidence 3 67999999974
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.012 Score=53.77 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN 124 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~ 124 (421)
.+++|+++|+|+ |++|+.++..|++.|. +|++++|+.
T Consensus 123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~ 160 (281)
T 3o8q_A 123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTF 160 (281)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 468999999997 8999999999999996 899999954
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.017 Score=53.67 Aligned_cols=116 Identities=14% Similarity=0.080 Sum_probs=68.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|.|.| .|.+|..++..|++.| ++|++++|+.++.+.......... .....+..... |. +.++++ |
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---d~----~~~~~a--D 71 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN---DW----AALADA--D 71 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEES---CG----GGGTTC--S
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeC---CH----HHhCCC--C
Confidence 6899999 5999999999999999 799999995432211111110000 01122333222 32 345656 9
Q ss_pred EEEEcccccCch--hhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 168 HVMHLAAQAGVR--YAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 168 ~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
+||-+++..... .........+..|..-...+++.+.+......+|.+|
T Consensus 72 vViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 999998763210 0011233567778887888888887766543555544
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.013 Score=55.75 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKK-RGDGVVGLDNF 123 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~-~g~~V~~~~r~ 123 (421)
.|.+|||+||+|.+|...++.+.. .|.+|++++++
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~ 206 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASR 206 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 578999999999999998887766 58999999884
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.01 Score=54.31 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=47.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+++||+|+|.|.++-+|+.++..|++.|++|+++.|... |+ + +.+.++++
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~------------------------~l---~-l~~~~~~A-- 211 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS------------------------TE---D-MIDYLRTA-- 211 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC------------------------HH---H-HHHHHHTC--
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC------------------------Cc---h-hhhhhccC--
Confidence 479999999999999999999999999999999876221 10 0 22667767
Q ss_pred cEEEEcccc
Q 043169 167 THVMHLAAQ 175 (421)
Q Consensus 167 d~vi~~Ag~ 175 (421)
|+||...|.
T Consensus 212 DIVI~Avg~ 220 (300)
T 4a26_A 212 DIVIAAMGQ 220 (300)
T ss_dssp SEEEECSCC
T ss_pred CEEEECCCC
Confidence 999999885
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0056 Score=58.01 Aligned_cols=108 Identities=22% Similarity=0.177 Sum_probs=67.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC---------------C-h--hHHHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY---------------D-P--SLKKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~---------------~-~--~~~~~~~~~~~~~~v~~~~ 148 (421)
+++++|+|.|+ |++|+++++.|+..|. ++.++|++.-.. . + ...+......+...+..+.
T Consensus 116 L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 194 (353)
T 3h5n_A 116 LKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIA 194 (353)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEE
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEee
Confidence 56789999997 9999999999999996 788888753110 0 0 1111111222334566777
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
.++++...+.+ ++++ |+||.+.... .. .-..+-++|.+.+. .+|+.+.
T Consensus 195 ~~i~~~~~~~~-~~~~--DlVvd~~Dn~---------~~-------~r~~ln~~c~~~~~--p~i~~~~ 242 (353)
T 3h5n_A 195 LNINDYTDLHK-VPEA--DIWVVSADHP---------FN-------LINWVNKYCVRANQ--PYINAGY 242 (353)
T ss_dssp CCCCSGGGGGG-SCCC--SEEEECCCCS---------TT-------HHHHHHHHHHHTTC--CEEEEEE
T ss_pred cccCchhhhhH-hccC--CEEEEecCCh---------HH-------HHHHHHHHHHHhCC--CEEEEEE
Confidence 77776554444 5555 9999875311 10 12345577888875 5776654
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0063 Score=57.83 Aligned_cols=77 Identities=22% Similarity=0.163 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH--HHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA--KLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~--~~~~~~~~~~ 164 (421)
..|.+|||+|+ |.+|...++.+... |++|++++++.+ +.+. .... +... ..|..+. +.+.++....
T Consensus 185 ~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~-----~~~~-~~~l---Ga~~-vi~~~~~~~~~v~~~~~g~ 253 (359)
T 1h2b_A 185 YPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEE-----KLKL-AERL---GADH-VVDARRDPVKQVMELTRGR 253 (359)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHH-----HHHH-HHHT---TCSE-EEETTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHH-----HHHH-HHHh---CCCE-EEeccchHHHHHHHHhCCC
Confidence 36789999999 99999999988888 999999997432 1111 1111 1211 1244443 3444444333
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
.+|+||+++|.
T Consensus 254 g~Dvvid~~G~ 264 (359)
T 1h2b_A 254 GVNVAMDFVGS 264 (359)
T ss_dssp CEEEEEESSCC
T ss_pred CCcEEEECCCC
Confidence 57999999984
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.017 Score=54.68 Aligned_cols=35 Identities=40% Similarity=0.382 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNF 123 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~ 123 (421)
..|.+|||+|+ |.+|...++.+...|+ +|++++++
T Consensus 170 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~ 205 (356)
T 1pl8_A 170 TLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLS 205 (356)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999996 9999999998888998 89999874
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.015 Score=55.48 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-----HHHHHHHhh
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-----AKLLAKLFD 162 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~~~~~~~ 162 (421)
.|.+|+|+|+ |.||...++.+...|+ +|++++++.++. +.... . +... ..|..+ .+.+.++..
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-----~~a~~-l---Ga~~-vi~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKF-----PKAKA-L---GATD-CLNPRELDKPVQDVITELTA 263 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH-----HHHHH-T---TCSE-EECGGGCSSCHHHHHHHHHT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHH-----HHHHH-h---CCcE-EEccccccchHHHHHHHHhC
Confidence 5789999996 9999999999888998 799988754321 11111 1 1111 123332 233444444
Q ss_pred ccCCcEEEEcccc
Q 043169 163 AVAFTHVMHLAAQ 175 (421)
Q Consensus 163 ~~~~d~vi~~Ag~ 175 (421)
. .+|+||+++|.
T Consensus 264 ~-g~Dvvid~~G~ 275 (376)
T 1e3i_A 264 G-GVDYSLDCAGT 275 (376)
T ss_dssp S-CBSEEEESSCC
T ss_pred C-CccEEEECCCC
Confidence 3 67999999974
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.25 E-value=0.014 Score=55.80 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-----HHHHHHHhh
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-----AKLLAKLFD 162 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~~~~~~~ 162 (421)
.|.+|||+|+ |.||..+++.+...|+ +|++++++.++. +.... ... . .+ .|..+ .+.+.++..
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~-----~~~~~-lGa-~-~v--i~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKF-----AKAKE-VGA-T-EC--VNPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH-----HHHHH-TTC-S-EE--ECGGGCSSCHHHHHHHHTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHH-----HHHHH-hCC-c-eE--ecccccchhHHHHHHHHhC
Confidence 5789999995 9999999999988998 799988754321 11111 111 1 12 23332 223444433
Q ss_pred ccCCcEEEEcccc
Q 043169 163 AVAFTHVMHLAAQ 175 (421)
Q Consensus 163 ~~~~d~vi~~Ag~ 175 (421)
. .+|+||+++|.
T Consensus 260 ~-g~D~vid~~g~ 271 (374)
T 2jhf_A 260 G-GVDFSFEVIGR 271 (374)
T ss_dssp S-CBSEEEECSCC
T ss_pred C-CCcEEEECCCC
Confidence 3 67999999974
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0068 Score=57.55 Aligned_cols=98 Identities=11% Similarity=0.132 Sum_probs=60.1
Q ss_pred CCEEEEEcCCChhHHHH-HHHH-HHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC--HHHHHHHhhcc
Q 043169 90 GMSVLVTGAAGFVGTHV-SLAL-KKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND--AKLLAKLFDAV 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l-~~~L-~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~~ 164 (421)
+.+|+|+|+ |.||... ++.+ ...|++ |++++++.+. +...+.. .. -+...+ |..+ ..++.++ ..
T Consensus 173 ~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~-~~~~~~~-~~----lGa~~v--~~~~~~~~~i~~~-~g- 241 (357)
T 2b5w_A 173 PSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRP-DPTIDII-EE----LDATYV--DSRQTPVEDVPDV-YE- 241 (357)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSS-CHHHHHH-HH----TTCEEE--ETTTSCGGGHHHH-SC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCccc-HHHHHHH-HH----cCCccc--CCCccCHHHHHHh-CC-
Confidence 389999999 9999999 8777 677997 9999985530 0011111 11 233333 4432 1124454 44
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSS 218 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~ 218 (421)
.+|+||+++|... .....++.++..| ++|.++..
T Consensus 242 g~Dvvid~~g~~~-----------------~~~~~~~~l~~~G---~iv~~g~~ 275 (357)
T 2b5w_A 242 QMDFIYEATGFPK-----------------HAIQSVQALAPNG---VGALLGVP 275 (357)
T ss_dssp CEEEEEECSCCHH-----------------HHHHHHHHEEEEE---EEEECCCC
T ss_pred CCCEEEECCCChH-----------------HHHHHHHHHhcCC---EEEEEeCC
Confidence 6799999998410 1234555666555 88877653
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.028 Score=52.88 Aligned_cols=94 Identities=21% Similarity=0.111 Sum_probs=55.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC---cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD---GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.++|.|.||+|.+|+.+++.|.++++ +++.+....+...... .....+.+...| ++ .++++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~-------~~g~~i~~~~~~---~~----~~~~~-- 69 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-------FAESSLRVGDVD---SF----DFSSV-- 69 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-------ETTEEEECEEGG---GC----CGGGC--
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc-------cCCcceEEecCC---HH----HhcCC--
Confidence 36899999999999999999997764 4555542111100000 001112222122 11 13455
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
|+||.+.|.. .+..+++.+.+.|. ++|.+|+..
T Consensus 70 DvV~~a~g~~------------------~s~~~a~~~~~aG~--kvId~Sa~~ 102 (340)
T 2hjs_A 70 GLAFFAAAAE------------------VSRAHAERARAAGC--SVIDLSGAL 102 (340)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEETTCTT
T ss_pred CEEEEcCCcH------------------HHHHHHHHHHHCCC--EEEEeCCCC
Confidence 9999988732 24567777777785 678888764
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.006 Score=55.34 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=47.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.++||+++|.|.++.+|+.++..|+.+|++|+++.+.. ..+.+.++++
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------------------------~~L~~~~~~A-- 204 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA-- 204 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHTTC--
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHhhcC--
Confidence 47999999999999999999999999999999887621 1244566666
Q ss_pred cEEEEccccc
Q 043169 167 THVMHLAAQA 176 (421)
Q Consensus 167 d~vi~~Ag~~ 176 (421)
|+||...|..
T Consensus 205 DIVI~Avg~p 214 (285)
T 3p2o_A 205 DLIIVAAGCV 214 (285)
T ss_dssp SEEEECSSCT
T ss_pred CEEEECCCCC
Confidence 9999998853
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.023 Score=54.34 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+.+|+|+|.|+ |.+|..+++.+.+.|++|++++.+.+..... . --.++..|..|.+.+.++++.+ |
T Consensus 10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~~--------~---ad~~~~~~~~d~~~l~~~~~~~--d 75 (377)
T 3orq_A 10 KFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCRY--------V---AHEFIQAKYDDEKALNQLGQKC--D 75 (377)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTGG--------G---SSEEEECCTTCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhhh--------h---CCEEEECCCCCHHHHHHHHHhC--C
Confidence 56889999996 8999999999999999999998754311110 1 1136678999999999999876 8
Q ss_pred EEEE
Q 043169 168 HVMH 171 (421)
Q Consensus 168 ~vi~ 171 (421)
+|+-
T Consensus 76 vi~~ 79 (377)
T 3orq_A 76 VITY 79 (377)
T ss_dssp EEEE
T ss_pred ccee
Confidence 7743
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.015 Score=56.04 Aligned_cols=76 Identities=21% Similarity=0.276 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC----HHHHHHHhh
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND----AKLLAKLFD 162 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~~~~~~~ 162 (421)
..|.+|||+|+ |.||...++.+...|+ +|++++++.+ +.+....-+..++ |..+ .+.+.+...
T Consensus 184 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~---------~~~~a~~lGa~~i--~~~~~~~~~~~~~~~~~ 251 (398)
T 2dph_A 184 KPGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPE---------RLKLLSDAGFETI--DLRNSAPLRDQIDQILG 251 (398)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHH---------HHHHHHTTTCEEE--ETTSSSCHHHHHHHHHS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH---------HHHHHHHcCCcEE--cCCCcchHHHHHHHHhC
Confidence 36789999997 9999999998888898 8999997432 1111112233333 4432 345555554
Q ss_pred ccCCcEEEEcccc
Q 043169 163 AVAFTHVMHLAAQ 175 (421)
Q Consensus 163 ~~~~d~vi~~Ag~ 175 (421)
...+|+||+++|.
T Consensus 252 g~g~Dvvid~~g~ 264 (398)
T 2dph_A 252 KPEVDCGVDAVGF 264 (398)
T ss_dssp SSCEEEEEECSCT
T ss_pred CCCCCEEEECCCC
Confidence 4357999999985
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0098 Score=54.98 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=51.4
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+.+++|+|.|+ |.||+.+++.|...|.+|++.+|+.+ +..... ..++..+. .+++.++++++
T Consensus 153 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~------~~~~~~---~~g~~~~~-----~~~l~~~l~~a- 216 (300)
T 2rir_A 153 YTIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSA------HLARIT---EMGLVPFH-----TDELKEHVKDI- 216 (300)
T ss_dssp SCSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHH------HHHHHH---HTTCEEEE-----GGGHHHHSTTC-
T ss_pred CCCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHH------HHHHHH---HCCCeEEc-----hhhHHHHhhCC-
Confidence 4578999999996 99999999999999999999998431 101111 12333322 23466677776
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
|+||++...
T Consensus 217 -DvVi~~~p~ 225 (300)
T 2rir_A 217 -DICINTIPS 225 (300)
T ss_dssp -SEEEECCSS
T ss_pred -CEEEECCCh
Confidence 999998764
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.01 Score=54.71 Aligned_cols=71 Identities=23% Similarity=0.159 Sum_probs=50.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+.+++|+|.|+ |.||+.+++.|...|.+|++.+|+.+ +..... ..++.++ + .+++.+++++.
T Consensus 152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~------~~~~~~---~~g~~~~--~---~~~l~~~l~~a-- 214 (293)
T 3d4o_A 152 TIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESD------LLARIA---EMGMEPF--H---ISKAAQELRDV-- 214 (293)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHH------HHHHHH---HTTSEEE--E---GGGHHHHTTTC--
T ss_pred CCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHH------HHHHHH---HCCCeec--C---hhhHHHHhcCC--
Confidence 478999999995 99999999999999999999998431 101111 1233332 1 23456677766
Q ss_pred cEEEEccc
Q 043169 167 THVMHLAA 174 (421)
Q Consensus 167 d~vi~~Ag 174 (421)
|+|+++..
T Consensus 215 DvVi~~~p 222 (293)
T 3d4o_A 215 DVCINTIP 222 (293)
T ss_dssp SEEEECCS
T ss_pred CEEEECCC
Confidence 99999874
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0082 Score=56.04 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=49.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
..|.+|+|+||+|.+|...++.+...|++|+++++. ..... .+..... .+ .|..+.+.+.+.++. +|
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~------~~~~~-~~~lGa~--~~--i~~~~~~~~~~~~~g--~D 217 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK------RNHAF-LKALGAE--QC--INYHEEDFLLAISTP--VD 217 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH------HHHHH-HHHHTCS--EE--EETTTSCHHHHCCSC--EE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc------chHHH-HHHcCCC--EE--EeCCCcchhhhhccC--CC
Confidence 368899999999999999999999999999998852 11111 1111111 12 344443334444444 49
Q ss_pred EEEEcccc
Q 043169 168 HVMHLAAQ 175 (421)
Q Consensus 168 ~vi~~Ag~ 175 (421)
+||+++|.
T Consensus 218 ~v~d~~g~ 225 (321)
T 3tqh_A 218 AVIDLVGG 225 (321)
T ss_dssp EEEESSCH
T ss_pred EEEECCCc
Confidence 99999873
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.012 Score=55.85 Aligned_cols=75 Identities=19% Similarity=0.104 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.|.+|+|+|+ |.||...++.+...|++|++++++.++. ....+...... + .|..+.+.+.++.. .+|+
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~-----~~~~~~lGa~~--v--i~~~~~~~~~~~~~--g~D~ 247 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKR-----EEALQDLGADD--Y--VIGSDQAKMSELAD--SLDY 247 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHH-----HHHHTTSCCSC--E--EETTCHHHHHHSTT--TEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHH-----HHHHHHcCCce--e--eccccHHHHHHhcC--CCCE
Confidence 6789999996 9999999998888899999999854311 11111111111 1 34556666665544 4599
Q ss_pred EEEcccc
Q 043169 169 VMHLAAQ 175 (421)
Q Consensus 169 vi~~Ag~ 175 (421)
||+++|.
T Consensus 248 vid~~g~ 254 (357)
T 2cf5_A 248 VIDTVPV 254 (357)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999985
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.019 Score=51.11 Aligned_cols=82 Identities=23% Similarity=0.351 Sum_probs=46.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEE-EeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhh-ccCCc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVG-LDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFD-AVAFT 167 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~-~~~~d 167 (421)
+++|.|.|+ |.+|+.+++.+.+++.+++. ++++.+......-........ +..+ ..|++.++.+.+.++ +....
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~--~~DV-vIDft~p~a~~~~~~l~~g~~ 78 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK--GADV-AIDFSNPNLLFPLLDEDFHLP 78 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT--TCSE-EEECSCHHHHHHHHTSCCCCC
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh--CCCE-EEEeCChHHHHHHHHHhcCCc
Confidence 478999999 99999999999998777666 455332100000000000000 1222 257777777666664 12456
Q ss_pred EEEEcccc
Q 043169 168 HVMHLAAQ 175 (421)
Q Consensus 168 ~vi~~Ag~ 175 (421)
+|+.+.|.
T Consensus 79 vVigTTG~ 86 (243)
T 3qy9_A 79 LVVATTGE 86 (243)
T ss_dssp EEECCCSS
T ss_pred eEeCCCCC
Confidence 77766654
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.022 Score=52.76 Aligned_cols=83 Identities=19% Similarity=0.079 Sum_probs=55.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
++.|++|+|.|++..+|+.+++.|+..|++|++++|+..+.... ................++++.+.+.++++
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~r-----a~~la~~~~~~t~~~~t~~~~L~e~l~~A-- 246 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTR-----GESLKLNKHHVEDLGEYSEDLLKKCSLDS-- 246 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEES-----CCCSSCCCCEEEEEEECCHHHHHHHHHHC--
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhH-----HHHHhhhcccccccccccHhHHHHHhccC--
Confidence 47899999999988899999999999999999998852110000 00000000111111124567888999888
Q ss_pred cEEEEccccc
Q 043169 167 THVMHLAAQA 176 (421)
Q Consensus 167 d~vi~~Ag~~ 176 (421)
|+||...|..
T Consensus 247 DIVIsAtg~p 256 (320)
T 1edz_A 247 DVVITGVPSE 256 (320)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCCC
Confidence 9999998863
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.023 Score=57.03 Aligned_cols=36 Identities=36% Similarity=0.333 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~ 124 (421)
+++.+|+|.|+ |++|.++++.|+..|. +++++|.+.
T Consensus 324 L~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~ 360 (615)
T 4gsl_A 324 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT 360 (615)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 56789999997 9999999999999996 788888754
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.03 Score=53.34 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-----HHHHHHHh
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-----AKLLAKLF 161 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~~~~~~ 161 (421)
..|.+|||+|+ |.||...++.+...|+ +|++++++.++.+ .... .... .+ .|..+ .+.+.++.
T Consensus 189 ~~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~-----~~~~-lGa~--~v--i~~~~~~~~~~~~v~~~~ 257 (373)
T 2fzw_A 189 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFA-----RAKE-FGAT--EC--INPQDFSKPIQEVLIEMT 257 (373)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHH-----HHHH-HTCS--EE--ECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHH-----HHHH-cCCc--eE--eccccccccHHHHHHHHh
Confidence 35789999996 9999999998888898 7999887543221 1111 1111 12 23332 23344444
Q ss_pred hccCCcEEEEcccc
Q 043169 162 DAVAFTHVMHLAAQ 175 (421)
Q Consensus 162 ~~~~~d~vi~~Ag~ 175 (421)
.. .+|+||+++|.
T Consensus 258 ~~-g~D~vid~~g~ 270 (373)
T 2fzw_A 258 DG-GVDYSFECIGN 270 (373)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCc
Confidence 33 67999999974
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.012 Score=53.55 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEE-eCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGL-DNF 123 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~-~r~ 123 (421)
+++++|.|.|++|.+|+.+++.+.+. +.+++++ +|+
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~ 42 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRT 42 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCT
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 34679999999999999999999876 6787774 554
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.013 Score=55.97 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=59.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhh----
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFD---- 162 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~---- 162 (421)
..|.+|||+|+ |.+|...++.+...|+ +|++++++.+ ..+.... .... .+ .|..+.+..+.+.+
T Consensus 181 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~~~a~~-lGa~--~v--i~~~~~~~~~~i~~~~~~ 249 (370)
T 4ej6_A 181 KAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQAT-----KRRLAEE-VGAT--AT--VDPSAGDVVEAIAGPVGL 249 (370)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHH-----HHHHHHH-HTCS--EE--ECTTSSCHHHHHHSTTSS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHH-cCCC--EE--ECCCCcCHHHHHHhhhhc
Confidence 35789999998 9999999999989999 7888876322 1111111 1111 11 24443332233222
Q ss_pred --ccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 163 --AVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 163 --~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+ .+|+||+++|.. ......++.++..| ++|.++.
T Consensus 250 ~~g-g~Dvvid~~G~~-----------------~~~~~~~~~l~~~G---~vv~~G~ 285 (370)
T 4ej6_A 250 VPG-GVDVVIECAGVA-----------------ETVKQSTRLAKAGG---TVVILGV 285 (370)
T ss_dssp STT-CEEEEEECSCCH-----------------HHHHHHHHHEEEEE---EEEECSC
T ss_pred cCC-CCCEEEECCCCH-----------------HHHHHHHHHhccCC---EEEEEec
Confidence 2 579999998731 11234555566555 8887764
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.025 Score=54.88 Aligned_cols=71 Identities=21% Similarity=0.170 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+.+|+|+|.|+ |.+|+.+++.+.+.|++|++++.+.+ .+.. ... -..+..|..|.+.+.++++++
T Consensus 32 ~~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~--~p~~------~~a---d~~~~~~~~d~~~l~~~a~~~-- 97 (419)
T 4e4t_A 32 ILPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPA--SPAG------AVA---DRHLRAAYDDEAALAELAGLC-- 97 (419)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTT--CHHH------HHS---SEEECCCTTCHHHHHHHHHHC--
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCc--Cchh------hhC---CEEEECCcCCHHHHHHHHhcC--
Confidence 357899999996 89999999999999999999975332 1111 111 135568999999999999765
Q ss_pred cEEEE
Q 043169 167 THVMH 171 (421)
Q Consensus 167 d~vi~ 171 (421)
|+|+.
T Consensus 98 D~V~~ 102 (419)
T 4e4t_A 98 EAVST 102 (419)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99883
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.024 Score=54.30 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcc----------------c
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD----------------I 151 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D----------------l 151 (421)
..+.+|+|.|+ |-+|...++.|...|++|++.+++..+. +... . -+..++..+ +
T Consensus 188 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l----~~~~-~----~G~~~~~~~~~~~~d~~~~~~ya~e~ 257 (405)
T 4dio_A 188 VPAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAK----EQVA-S----LGAKFIAVEDEEFKAAETAGGYAKEM 257 (405)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHH----HHHH-H----TTCEECCCCC----------------
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHH----HHHH-H----cCCceeecccccccccccccchhhhc
Confidence 46789999998 9999999999999999999999865421 1111 1 123333322 2
Q ss_pred CC------HHHHHHHhhccCCcEEEEccccc
Q 043169 152 ND------AKLLAKLFDAVAFTHVMHLAAQA 176 (421)
Q Consensus 152 ~d------~~~~~~~~~~~~~d~vi~~Ag~~ 176 (421)
++ .+.+.++++++ |+||+++...
T Consensus 258 s~~~~~~~~~~l~e~l~~a--DVVI~tvlip 286 (405)
T 4dio_A 258 SGEYQVKQAALVAEHIAKQ--DIVITTALIP 286 (405)
T ss_dssp -CHHHHHHHHHHHHHHHTC--SEEEECCCCS
T ss_pred chhhhhhhHhHHHHHhcCC--CEEEECCcCC
Confidence 22 35788888888 9999988653
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.029 Score=50.04 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=47.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc---cCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA---VAF 166 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~---~~~ 166 (421)
++|.|.|++|.+|+.+++.+.+. |++++.+....+.. ..... .... +..|++.++.+.+.++. ...
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl----~~~~~-----~~~D-vvIDfT~p~a~~~~~~~a~~~g~ 70 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPL----SLLTD-----GNTE-VVIDFTHPDVVMGNLEFLIDNGI 70 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCT----HHHHH-----TTCC-EEEECSCTTTHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCH----HHHhc-----cCCc-EEEEccChHHHHHHHHHHHHcCC
Confidence 47999999999999999999876 89988765433211 11110 1122 45677777665554433 256
Q ss_pred cEEEEccc
Q 043169 167 THVMHLAA 174 (421)
Q Consensus 167 d~vi~~Ag 174 (421)
++|+-.-|
T Consensus 71 ~~VigTTG 78 (245)
T 1p9l_A 71 HAVVGTTG 78 (245)
T ss_dssp EEEECCCC
T ss_pred CEEEcCCC
Confidence 77776555
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.012 Score=53.06 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=46.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
++||+|+|.|+++-+|+.++..|++.|++|+++.+.. ..+.+.++++ |
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t------------------------------~~L~~~~~~A--D 195 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT------------------------------KDIGSMTRSS--K 195 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHHHS--S
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc------------------------------ccHHHhhccC--C
Confidence 7999999999999999999999999999999887521 1244566666 9
Q ss_pred EEEEcccc
Q 043169 168 HVMHLAAQ 175 (421)
Q Consensus 168 ~vi~~Ag~ 175 (421)
+||...|.
T Consensus 196 IVI~Avg~ 203 (276)
T 3ngx_A 196 IVVVAVGR 203 (276)
T ss_dssp EEEECSSC
T ss_pred EEEECCCC
Confidence 99998875
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=59.12 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.|.+|||+||+|.+|...++.+...|++|++++++.
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~ 202 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDR 202 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 678999999999999999998888899998888654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0075 Score=57.32 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEccc----------------
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI---------------- 151 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl---------------- 151 (421)
..+++|+|.|+ |-+|...++.|...|++|++++|+.++. +... . -+..++..|+
T Consensus 182 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l----~~~~-~----lGa~~~~l~~~~~~~~gya~~~~~~~ 251 (381)
T 3p2y_A 182 VKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVA----EQVR-S----VGAQWLDLGIDAAGEGGYARELSEAE 251 (381)
T ss_dssp ECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGH----HHHH-H----TTCEECCCC-------------CHHH
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHH-H----cCCeEEeccccccccccchhhhhHHH
Confidence 46789999998 9999999999999999999999854321 1111 1 2334433221
Q ss_pred --CCHHHHHHHhhccCCcEEEEcccc
Q 043169 152 --NDAKLLAKLFDAVAFTHVMHLAAQ 175 (421)
Q Consensus 152 --~d~~~~~~~~~~~~~d~vi~~Ag~ 175 (421)
.+.+.+.++++++ |+||.++..
T Consensus 252 ~~~~~~~l~e~l~~a--DIVI~tv~i 275 (381)
T 3p2y_A 252 RAQQQQALEDAITKF--DIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHHHTTC--SEEEECCCC
T ss_pred HhhhHHHHHHHHhcC--CEEEECCCC
Confidence 1245677777777 999998754
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.013 Score=55.49 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+.++|.|.||+|.+|+.+++.|.++. .+++.+....+...+. ... ..... ..+ ..|+.-.+ .+.++++ |
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~-~~~-~~~~~-~~v---~~dl~~~~--~~~~~~v--D 84 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSM-ESV-FPHLR-AQK---LPTLVSVK--DADFSTV--D 84 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCH-HHH-CGGGT-TSC---CCCCBCGG--GCCGGGC--S
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCH-HHh-Cchhc-Ccc---cccceecc--hhHhcCC--C
Confidence 44689999999999999999999886 4888776543222111 110 00011 111 12332222 3344445 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
+||.+++... +......+ +.|. ++|-.|+..
T Consensus 85 vVf~atp~~~------------------s~~~a~~~-~aG~--~VId~sa~~ 115 (359)
T 1xyg_A 85 AVFCCLPHGT------------------TQEIIKEL-PTAL--KIVDLSADF 115 (359)
T ss_dssp EEEECCCTTT------------------HHHHHHTS-CTTC--EEEECSSTT
T ss_pred EEEEcCCchh------------------HHHHHHHH-hCCC--EEEECCccc
Confidence 9999987532 33455666 6664 788888753
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.039 Score=51.81 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
..|.+|||+|+ |.+|...++.+...|++|++++++.
T Consensus 165 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~ 200 (340)
T 3s2e_A 165 RPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDD 200 (340)
T ss_dssp CTTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 36889999997 8999999999999999999998843
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.02 Score=52.23 Aligned_cols=36 Identities=17% Similarity=0.042 Sum_probs=32.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNF 123 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~ 123 (421)
.+++++++|+|+ |+.|+.++..|.+.|. +|+++.|+
T Consensus 119 ~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt 155 (282)
T 3fbt_A 119 EIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRN 155 (282)
T ss_dssp CCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESC
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 367999999997 8999999999999998 89999984
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.017 Score=52.39 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=46.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.++||+++|.|.++-+|+.++..|+.+|++|+++.+.. ..+.+.++++
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------------------------~~L~~~~~~A-- 205 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------------------------TDLKSHTTKA-- 205 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SSHHHHHTTC--
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHhcccC--
Confidence 47999999999999999999999999999998886521 1244566666
Q ss_pred cEEEEcccc
Q 043169 167 THVMHLAAQ 175 (421)
Q Consensus 167 d~vi~~Ag~ 175 (421)
|+||...|.
T Consensus 206 DIVI~Avg~ 214 (285)
T 3l07_A 206 DILIVAVGK 214 (285)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999885
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.026 Score=53.30 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=60.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC---HHHHHHHhhc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND---AKLLAKLFDA 163 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~~~~~~~~ 163 (421)
..|.+|+|+|+ |.||...++.+...|+ +|++++++.+ +.+.. +..... .+ .|..+ .+.+.+....
T Consensus 165 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~-----~~~~~-~~lGa~--~v--i~~~~~~~~~~v~~~t~g 233 (352)
T 3fpc_A 165 KLGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKH-----CCDIA-LEYGAT--DI--INYKNGDIVEQILKATDG 233 (352)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHH-----HHHHH-HHHTCC--EE--ECGGGSCHHHHHHHHTTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHH-----HHHHH-HHhCCc--eE--EcCCCcCHHHHHHHHcCC
Confidence 35789999996 9999999998888898 7999887432 11111 112111 12 23322 2344444444
Q ss_pred cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
..+|+||+++|... .....++.++..| ++|.++.
T Consensus 234 ~g~D~v~d~~g~~~-----------------~~~~~~~~l~~~G---~~v~~G~ 267 (352)
T 3fpc_A 234 KGVDKVVIAGGDVH-----------------TFAQAVKMIKPGS---DIGNVNY 267 (352)
T ss_dssp CCEEEEEECSSCTT-----------------HHHHHHHHEEEEE---EEEECCC
T ss_pred CCCCEEEECCCChH-----------------HHHHHHHHHhcCC---EEEEecc
Confidence 45799999988521 1234555556555 8887764
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.017 Score=55.31 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
...|+|+|+|+ |.+|..+++.+.+.|++|++++..... ... .. . -.++..|..|.+.+.++++..++|
T Consensus 9 ~~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~~--~~~------~~--~-d~~~~~~~~d~~~l~~~~~~~~~d 76 (391)
T 1kjq_A 9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADA--PAM------HV--A-HRSHVINMLDGDALRRVVELEKPH 76 (391)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTC--GGG------GG--S-SEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCCC--chh------hh--c-cceEECCCCCHHHHHHHHHHcCCC
Confidence 46689999987 789999999999999999999864321 110 01 1 135667888999999998877889
Q ss_pred EEEEcc
Q 043169 168 HVMHLA 173 (421)
Q Consensus 168 ~vi~~A 173 (421)
.|+..-
T Consensus 77 ~v~~~~ 82 (391)
T 1kjq_A 77 YIVPEI 82 (391)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 998744
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.01 Score=55.97 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=58.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+++|.|.||+|.+|+.+++.|.++. .+++.+.+..+........ ..... +. ....+.+.+ + +++ .|+
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~--~~~~~--g~--~~~~~~~~~---~-~~~--vDv 71 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFV--HPNLR--GR--TNLKFVPPE---K-LEP--ADI 71 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGT--CGGGT--TT--CCCBCBCGG---G-CCC--CSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHh--Cchhc--Cc--ccccccchh---H-hcC--CCE
Confidence 4689999999999999999999876 4777776643322111000 00000 00 011222322 2 344 499
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
||.++|... +..+.+.+.+.|. ++|-.|+..
T Consensus 72 V~~a~g~~~------------------s~~~a~~~~~aG~--~VId~Sa~~ 102 (345)
T 2ozp_A 72 LVLALPHGV------------------FAREFDRYSALAP--VLVDLSADF 102 (345)
T ss_dssp EEECCCTTH------------------HHHTHHHHHTTCS--EEEECSSTT
T ss_pred EEEcCCcHH------------------HHHHHHHHHHCCC--EEEEcCccc
Confidence 999987421 3456666667775 788888853
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.012 Score=57.69 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
.+.||+|+|||+ |+||..+++.|++.|++|++.+++
T Consensus 262 ~L~GKtVvVtGa-GgIG~aiA~~Laa~GA~Viv~D~~ 297 (488)
T 3ond_A 262 MIAGKVAVVAGY-GDVGKGCAAALKQAGARVIVTEID 297 (488)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 478999999998 599999999999999999999874
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.019 Score=55.39 Aligned_cols=72 Identities=24% Similarity=0.209 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+.|++|+|.|+ |.+|..+++.|...|. +|++++|+.++. ...... . +..+ .+. +++.+.+.++
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra----~~la~~-~---g~~~--~~~---~~l~~~l~~a-- 228 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERA----VELARD-L---GGEA--VRF---DELVDHLARS-- 228 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHH----HHHHHH-H---TCEE--CCG---GGHHHHHHTC--
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHH----HHHHHH-c---CCce--ecH---HhHHHHhcCC--
Confidence 68999999998 9999999999999998 899999843210 011111 1 1222 222 2355566665
Q ss_pred cEEEEcccc
Q 043169 167 THVMHLAAQ 175 (421)
Q Consensus 167 d~vi~~Ag~ 175 (421)
|+||++.+.
T Consensus 229 DvVi~at~~ 237 (404)
T 1gpj_A 229 DVVVSATAA 237 (404)
T ss_dssp SEEEECCSS
T ss_pred CEEEEccCC
Confidence 999999764
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.019 Score=55.07 Aligned_cols=37 Identities=27% Similarity=0.268 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
+.+++|+|+|+ |.+|..+++.+...|++|++.+++..
T Consensus 170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~ 206 (384)
T 1l7d_A 170 VPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAA 206 (384)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 57899999996 99999999999999999999998654
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.012 Score=53.40 Aligned_cols=57 Identities=28% Similarity=0.300 Sum_probs=46.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+++||+|+|.|.++-+|+.++..|+..|++|+++.+... .+.+.++++
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~------------------------------~L~~~~~~A-- 205 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTR------------------------------DLADHVSRA-- 205 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCS------------------------------CHHHHHHTC--
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCc------------------------------CHHHHhccC--
Confidence 478999999999999999999999999999998865211 244566666
Q ss_pred cEEEEcccc
Q 043169 167 THVMHLAAQ 175 (421)
Q Consensus 167 d~vi~~Ag~ 175 (421)
|+||...|.
T Consensus 206 DIVI~Avg~ 214 (286)
T 4a5o_A 206 DLVVVAAGK 214 (286)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999875
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.016 Score=52.51 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=33.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY 126 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~ 126 (421)
+++|+|.|+ |+.|+.++..|++.|.+|+++.|+.++
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~k 153 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRG 153 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 899999997 999999999999999999999997654
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0061 Score=56.94 Aligned_cols=35 Identities=37% Similarity=0.466 Sum_probs=31.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
++ |||+||+|.+|...++.+...|++|++++++.+
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~ 182 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRES 182 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45 999999999999999999999999999998554
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.022 Score=54.22 Aligned_cols=74 Identities=23% Similarity=0.217 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.|.+|||+|+ |.||...++.+...|++|++++++.++.+ .. .. .... . ..|..+.+.++++.. .+|+
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~----~a-~~-lGa~--~--vi~~~~~~~~~~~~~--g~Dv 260 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKRE----AA-KA-LGAD--E--VVNSRNADEMAAHLK--SFDF 260 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHH----HH-HH-HTCS--E--EEETTCHHHHHTTTT--CEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HH-HH-cCCc--E--EeccccHHHHHHhhc--CCCE
Confidence 5789999998 89999999998889999999998543221 11 11 1111 1 135556554544433 4699
Q ss_pred EEEcccc
Q 043169 169 VMHLAAQ 175 (421)
Q Consensus 169 vi~~Ag~ 175 (421)
||+++|.
T Consensus 261 vid~~g~ 267 (369)
T 1uuf_A 261 ILNTVAA 267 (369)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 9999985
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.021 Score=54.66 Aligned_cols=77 Identities=17% Similarity=0.095 Sum_probs=50.4
Q ss_pred CCCEEEEEc-CCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC---HHHHHHHhhcc
Q 043169 89 GGMSVLVTG-AAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND---AKLLAKLFDAV 164 (421)
Q Consensus 89 ~~k~vlITG-~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~~~~~~~~~ 164 (421)
.+.+|+|.| |+|.+|...++.+...|++|++++++.+ +.+ ........ .++ |..+ .+.+.++....
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~-----~~~-~~~~lGa~--~~~--~~~~~~~~~~v~~~t~~~ 239 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQE-----QAD-LLKAQGAV--HVC--NAASPTFMQDLTEALVST 239 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHH-----HHH-HHHHTTCS--CEE--ETTSTTHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHH-----HHH-HHHhCCCc--EEE--eCCChHHHHHHHHHhcCC
Confidence 577899997 9999999999999889999999987432 111 11112111 122 3332 23455555444
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
.+|+||+++|.
T Consensus 240 g~d~v~d~~g~ 250 (379)
T 3iup_A 240 GATIAFDATGG 250 (379)
T ss_dssp CCCEEEESCEE
T ss_pred CceEEEECCCc
Confidence 67999999985
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.013 Score=56.51 Aligned_cols=36 Identities=28% Similarity=0.234 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
+.+++|+|+|+ |.+|..+++.+...|++|++++++.
T Consensus 170 l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 170 VPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 57899999997 9999999999999999999999854
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.011 Score=56.12 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH-HHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA-KLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~~~~d 167 (421)
.|.+|||+|+ |.||..+++.+...|++|++++++.++.+.. + . .... .+ .|..+. +..+++.. .+|
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~----~-~-lGa~--~v--~~~~~~~~~~~~~~~--~~D 245 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDA----M-K-MGAD--HY--IATLEEGDWGEKYFD--TFD 245 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHH----H-H-HTCS--EE--EEGGGTSCHHHHSCS--CEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH----H-H-cCCC--EE--EcCcCchHHHHHhhc--CCC
Confidence 5789999999 9999999999888999999999866533221 1 1 1111 12 233332 22223222 569
Q ss_pred EEEEcccc
Q 043169 168 HVMHLAAQ 175 (421)
Q Consensus 168 ~vi~~Ag~ 175 (421)
+||+++|.
T Consensus 246 ~vid~~g~ 253 (360)
T 1piw_A 246 LIVVCASS 253 (360)
T ss_dssp EEEECCSC
T ss_pred EEEECCCC
Confidence 99999985
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.044 Score=51.34 Aligned_cols=70 Identities=13% Similarity=0.038 Sum_probs=49.7
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+.+|+|.|.|. |.||+.+++.|.+.|++|++.+|+.+..+ .. ...++.+ .+ +.++++++
T Consensus 151 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~~----~~-----~~~g~~~-----~~---l~e~l~~a- 211 (330)
T 2gcg_A 151 YGLTQSTVGIIGL-GRIGQAIARRLKPFGVQRFLYTGRQPRPE----EA-----AEFQAEF-----VS---TPELAAQS- 211 (330)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHGGGTCCEEEEESSSCCHH----HH-----HTTTCEE-----CC---HHHHHHHC-
T ss_pred cCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcchh----HH-----HhcCcee-----CC---HHHHHhhC-
Confidence 3578999999996 99999999999999999999998654211 11 1123322 12 44566666
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
|+|+.+...
T Consensus 212 -DvVi~~vp~ 220 (330)
T 2gcg_A 212 -DFIVVACSL 220 (330)
T ss_dssp -SEEEECCCC
T ss_pred -CEEEEeCCC
Confidence 999987753
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.074 Score=50.58 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=49.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~ 164 (421)
..|.+|+|+||+|.+|...++.+...|++|++++. .+ +.+.... ... -.++ |..+. +.+.++..+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~-~~-----~~~~~~~-lGa--~~vi--~~~~~~~~~~v~~~t~g- 230 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCS-PH-----NFDLAKS-RGA--EEVF--DYRAPNLAQTIRTYTKN- 230 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC-GG-----GHHHHHH-TTC--SEEE--ETTSTTHHHHHHHHTTT-
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC-HH-----HHHHHHH-cCC--cEEE--ECCCchHHHHHHHHccC-
Confidence 36789999999999999999999999999998863 21 1111111 111 1122 33332 234444333
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
++|++|.++|.
T Consensus 231 ~~d~v~d~~g~ 241 (371)
T 3gqv_A 231 NLRYALDCITN 241 (371)
T ss_dssp CCCEEEESSCS
T ss_pred CccEEEECCCc
Confidence 47999999984
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.033 Score=53.52 Aligned_cols=76 Identities=20% Similarity=0.177 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC----HHHHHHHhh
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND----AKLLAKLFD 162 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~~~~~~~ 162 (421)
..|.+|||.|+ |.||...++.+...|+ +|++++++.+ +.+.. +. -+... .|..+ .+.+.++..
T Consensus 184 ~~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~-----~~~~a-~~---lGa~~--i~~~~~~~~~~~v~~~t~ 251 (398)
T 1kol_A 184 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPA-----RLAHA-KA---QGFEI--ADLSLDTPLHEQIAALLG 251 (398)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHH-HH---TTCEE--EETTSSSCHHHHHHHHHS
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHH-----HHHHH-HH---cCCcE--EccCCcchHHHHHHHHhC
Confidence 36789999995 9999999998888998 6888887432 11111 11 23333 34332 334555544
Q ss_pred ccCCcEEEEcccc
Q 043169 163 AVAFTHVMHLAAQ 175 (421)
Q Consensus 163 ~~~~d~vi~~Ag~ 175 (421)
...+|+||.++|.
T Consensus 252 g~g~Dvvid~~G~ 264 (398)
T 1kol_A 252 EPEVDCAVDAVGF 264 (398)
T ss_dssp SSCEEEEEECCCT
T ss_pred CCCCCEEEECCCC
Confidence 3356999999985
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0069 Score=55.50 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY 127 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 127 (421)
+.++|.|.|+ |.+|..++..|++.|++|++.+++.+..
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 40 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDAL 40 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 3478999986 9999999999999999999999965433
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.053 Score=50.84 Aligned_cols=94 Identities=18% Similarity=0.094 Sum_probs=57.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC---CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRG---DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+++|.|.||+|.+|+.+++.|.+++ .+++.+....+...... .....+.+...|. + .++++
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~-------~~~~~i~~~~~~~---~----~~~~v-- 66 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR-------FNGKTVRVQNVEE---F----DWSQV-- 66 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE-------ETTEEEEEEEGGG---C----CGGGC--
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee-------ecCceeEEecCCh---H----HhcCC--
Confidence 4789999999999999999999984 46666653211111000 1112233322221 1 23445
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
|+||-+.|.. .+....+.+.+.|. ++|-.|+..
T Consensus 67 DvVf~a~g~~------------------~s~~~a~~~~~~G~--~vId~s~~~ 99 (336)
T 2r00_A 67 HIALFSAGGE------------------LSAKWAPIAAEAGV--VVIDNTSHF 99 (336)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEECSSTT
T ss_pred CEEEECCCch------------------HHHHHHHHHHHcCC--EEEEcCCcc
Confidence 9999988642 14456666777775 788888764
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.028 Score=52.20 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=52.2
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
...+.||+|.|.|. |-||+.+++.|...|.+|++.+|+.... ..+... ...+++.+++++.
T Consensus 134 ~~~l~g~tvGIiG~-G~IG~~vA~~l~~~G~~V~~~dr~~~~~--------------~~~~~~----~~~~~l~ell~~a 194 (315)
T 3pp8_A 134 EYTREEFSVGIMGA-GVLGAKVAESLQAWGFPLRCWSRSRKSW--------------PGVESY----VGREELRAFLNQT 194 (315)
T ss_dssp CCCSTTCCEEEECC-SHHHHHHHHHHHTTTCCEEEEESSCCCC--------------TTCEEE----ESHHHHHHHHHTC
T ss_pred CCCcCCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEcCCchhh--------------hhhhhh----cccCCHHHHHhhC
Confidence 34588999999996 9999999999999999999999865422 112111 1236788888887
Q ss_pred CCcEEEEccc
Q 043169 165 AFTHVMHLAA 174 (421)
Q Consensus 165 ~~d~vi~~Ag 174 (421)
|+|+.+.-
T Consensus 195 --DiV~l~~P 202 (315)
T 3pp8_A 195 --RVLINLLP 202 (315)
T ss_dssp --SEEEECCC
T ss_pred --CEEEEecC
Confidence 99888764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.026 Score=53.76 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC----C-HHHHHHHhh
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN----D-AKLLAKLFD 162 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~----d-~~~~~~~~~ 162 (421)
.|.+|+|+|+ |.||...++.+...|+ +|++++++.++. +.... .... .+ .|.. + .+.+.++..
T Consensus 191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~-----~~a~~-lGa~--~v--i~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKF-----PKAIE-LGAT--EC--LNPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGH-----HHHHH-TTCS--EE--ECGGGCSSCHHHHHHHHTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHH-----HHHHH-cCCc--EE--EecccccchHHHHHHHHhC
Confidence 5789999996 9999999998888898 799988754321 11111 1111 12 2333 2 233444444
Q ss_pred ccCCcEEEEcccc
Q 043169 163 AVAFTHVMHLAAQ 175 (421)
Q Consensus 163 ~~~~d~vi~~Ag~ 175 (421)
. .+|+||+++|.
T Consensus 260 g-g~Dvvid~~g~ 271 (373)
T 1p0f_A 260 G-GVDYAVECAGR 271 (373)
T ss_dssp S-CBSEEEECSCC
T ss_pred C-CCCEEEECCCC
Confidence 3 67999999974
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0085 Score=56.62 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY 126 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~ 126 (421)
..|.+|||+|+ |.||...++.+...|++|++++++.++
T Consensus 175 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~ 212 (348)
T 3two_A 175 TKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHK 212 (348)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTT
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 36889999997 999999999999999999999986653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.035 Score=53.57 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC---HHHHHHHhhc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND---AKLLAKLFDA 163 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~~~~~~~~ 163 (421)
..|.+|||+|+ |.+|...++.+...|+ +|++++++.+ +.+.. +.... . .++ |..+ .+.+.++...
T Consensus 212 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~~~~-~~lGa-~-~vi--~~~~~~~~~~i~~~t~g 280 (404)
T 3ip1_A 212 RPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEV-----RRNLA-KELGA-D-HVI--DPTKENFVEAVLDYTNG 280 (404)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHH-----HHHHH-HHHTC-S-EEE--CTTTSCHHHHHHHHTTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHH-HHcCC-C-EEE--cCCCCCHHHHHHHHhCC
Confidence 36789999998 9999999999988999 8988887432 11111 11211 1 122 3332 2345555444
Q ss_pred cCCcEEEEcccc
Q 043169 164 VAFTHVMHLAAQ 175 (421)
Q Consensus 164 ~~~d~vi~~Ag~ 175 (421)
..+|+||.++|.
T Consensus 281 ~g~D~vid~~g~ 292 (404)
T 3ip1_A 281 LGAKLFLEATGV 292 (404)
T ss_dssp CCCSEEEECSSC
T ss_pred CCCCEEEECCCC
Confidence 467999999984
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.062 Score=50.28 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=59.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeCCC---CCCChhHHHHHHHhhcC-CceEEEEc-ccCCHHHHHHHhhc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDNFN---NYYDPSLKKARKALLNN-HGVFVIEG-DINDAKLLAKLFDA 163 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~---~~~~~~~~~~~~~~~~~-~~v~~~~~-Dl~d~~~~~~~~~~ 163 (421)
+++|.|.|++|++|..+++.|.++ ++++..+..+. +..... ...- ..... ..+.+... |. + +++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~-~~~~-p~~~~~~~~~v~~~~~~---~---~~~~~ 75 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI-SDLH-PQLKGIVELPLQPMSDI---S---EFSPG 75 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH-HHHC-GGGTTTCCCBEEEESSG---G---GTCTT
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch-HHhC-ccccCccceeEeccCCH---H---HHhcC
Confidence 368999999999999999999985 56887775543 222221 1110 00111 13333332 22 1 22244
Q ss_pred cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
+ |+||-+.+.. .+..+.+.+.+.|. ++|-.|+..
T Consensus 76 ~--Dvvf~a~p~~------------------~s~~~~~~~~~~g~--~vIDlSa~f 109 (337)
T 3dr3_A 76 V--DVVFLATAHE------------------VSHDLAPQFLEAGC--VVFDLSGAF 109 (337)
T ss_dssp C--SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEECSSTT
T ss_pred C--CEEEECCChH------------------HHHHHHHHHHHCCC--EEEEcCCcc
Confidence 5 9999887631 13456666667775 889888864
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.025 Score=57.41 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC----------C----hhHH----HHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY----------D----PSLK----KARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----------~----~~~~----~~~~~~~~~~~v~~~~ 148 (421)
+.+.+|+|.|+ |++|.++++.|+..|. +++++|.+.=.. . ..+. +......+...+..+.
T Consensus 15 L~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~ 93 (640)
T 1y8q_B 15 VAGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYH 93 (640)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEE
T ss_pred HhcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEe
Confidence 34579999997 9999999999999996 788888643100 0 0011 1111112234566667
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
.++++.....++++++ |+||++.. |+..-..+-++|.+.+. .+|..++.+
T Consensus 94 ~~i~~~~~~~~~~~~~--DlVvda~D-----------------n~~aR~~ln~~c~~~~i--PlI~~g~~G 143 (640)
T 1y8q_B 94 DSIMNPDYNVEFFRQF--ILVMNALD-----------------NRAARNHVNRMCLAADV--PLIESGTAG 143 (640)
T ss_dssp SCTTSTTSCHHHHTTC--SEEEECCS-----------------CHHHHHHHHHHHHHHTC--CEEEEEEET
T ss_pred cccchhhhhHhhhcCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEEEec
Confidence 7775432223556655 88888642 33344566677877775 566665543
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.03 Score=53.65 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
+.+|+|+|.|+ |.+|..+++.+.+.|++|++++.+...... ..--..+..|..|.+.+.++++.. |
T Consensus 12 ~~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~~~~~~~~-----------~~ad~~~~~~~~d~~~l~~~~~~~--d 77 (389)
T 3q2o_A 12 LPGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDPTKNSPCA-----------QVADIEIVASYDDLKAIQHLAEIS--D 77 (389)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTT-----------TTCSEEEECCTTCHHHHHHHHHTC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchH-----------HhCCceEecCcCCHHHHHHHHHhC--C
Confidence 57899999996 889999999999999999999874421110 001134568899999999999876 8
Q ss_pred EEE
Q 043169 168 HVM 170 (421)
Q Consensus 168 ~vi 170 (421)
+|.
T Consensus 78 vI~ 80 (389)
T 3q2o_A 78 VVT 80 (389)
T ss_dssp EEE
T ss_pred Eee
Confidence 874
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.023 Score=54.34 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC----C-HHHHHHHhh
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN----D-AKLLAKLFD 162 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~----d-~~~~~~~~~ 162 (421)
.|.+|||+|+ |.||...++.+...|+ +|++++++.++. + .... -+... ..|.. + .+.+.++..
T Consensus 193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~-----~-~a~~---lGa~~-vi~~~~~~~~~~~~i~~~~~ 261 (378)
T 3uko_A 193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKY-----E-TAKK---FGVNE-FVNPKDHDKPIQEVIVDLTD 261 (378)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHH-----H-HHHT---TTCCE-EECGGGCSSCHHHHHHHHTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHH-----H-HHHH---cCCcE-EEccccCchhHHHHHHHhcC
Confidence 5789999998 9999999999988998 899998755421 1 1111 12211 12332 2 234555555
Q ss_pred ccCCcEEEEcccc
Q 043169 163 AVAFTHVMHLAAQ 175 (421)
Q Consensus 163 ~~~~d~vi~~Ag~ 175 (421)
. .+|+||.++|.
T Consensus 262 g-g~D~vid~~g~ 273 (378)
T 3uko_A 262 G-GVDYSFECIGN 273 (378)
T ss_dssp S-CBSEEEECSCC
T ss_pred C-CCCEEEECCCC
Confidence 5 68999999984
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.033 Score=55.87 Aligned_cols=36 Identities=36% Similarity=0.306 Sum_probs=31.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNF 123 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~ 123 (421)
.+++++|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 324 kL~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D 360 (598)
T 3vh1_A 324 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNG 360 (598)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 356789999997 9999999999999996 68888664
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.06 Score=52.74 Aligned_cols=78 Identities=23% Similarity=0.184 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+++|+|+|.|. |..|..+|+.|.++|++|.+.|++.....+.. ..+...++.+..+.-.+ +.+++ .+
T Consensus 6 ~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~-----~~L~~~gi~~~~g~~~~-----~~~~~-~~ 73 (451)
T 3lk7_A 6 TFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTA-----QSLLEEGIKVVCGSHPL-----ELLDE-DF 73 (451)
T ss_dssp TTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHH-----HHHHHTTCEEEESCCCG-----GGGGS-CE
T ss_pred hcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHH-----HHHHhCCCEEEECCChH-----HhhcC-CC
Confidence 467899999998 89999999999999999999998543211111 12223467776554321 22333 14
Q ss_pred cEEEEccccc
Q 043169 167 THVMHLAAQA 176 (421)
Q Consensus 167 d~vi~~Ag~~ 176 (421)
|.||...|+.
T Consensus 74 d~vv~spgi~ 83 (451)
T 3lk7_A 74 CYMIKNPGIP 83 (451)
T ss_dssp EEEEECTTSC
T ss_pred CEEEECCcCC
Confidence 9999998874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 421 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 7e-81 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 3e-78 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-74 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 1e-69 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 5e-69 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 2e-67 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 8e-59 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 4e-58 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 8e-57 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 5e-56 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 4e-55 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 1e-54 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 9e-54 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 2e-53 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 3e-49 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 4e-43 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 1e-38 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 1e-30 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 1e-30 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 9e-24 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 7e-23 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 9e-18 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 3e-17 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 4e-17 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 2e-16 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 3e-16 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 3e-10 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 4e-07 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 9e-07 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 7e-06 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 6e-05 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 2e-04 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 2e-04 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 2e-04 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 3e-04 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 3e-04 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 3e-04 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 4e-04 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 4e-04 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 5e-04 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 6e-04 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 7e-04 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 0.001 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.001 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 0.001 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 0.001 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 0.001 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 0.002 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 0.002 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 0.002 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.003 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 0.003 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 0.003 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 0.004 | |
| d1hyea1 | 145 | c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge | 0.004 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 0.004 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 251 bits (641), Expect = 7e-81
Identities = 75/345 (21%), Positives = 140/345 (40%), Gaps = 34/345 (9%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
M +L+TG AGF+G+ V + K D VV +D + ++ + ++
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN---LESLSDISESNRYNFEHA 57
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
DI D+ + ++F+ VMHLAA++ V ++ P +++ +NI G LLE +
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA 117
Query: 210 PS--------IVWASSSSVYG---------LNENVPFSEADRTDQPASLYAATKKAGEEI 252
S+ VYG + +P P+S Y+A+K + + +
Sbjct: 118 LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHL 177
Query: 253 AHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312
+ YGL YGP+ P+ N L+GKP+ +Y + + RD+
Sbjct: 178 VRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQI---RDWL 234
Query: 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHL-----KVKAKKNVI 367
Y++D + + +N+G + +V + L K + + I
Sbjct: 235 YVEDHARALHMVVTE---GKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQI 291
Query: 368 EMPGN--GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
+ G + +E G++P ++G++K V WYL+
Sbjct: 292 TYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLA 336
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 243 bits (620), Expect = 3e-78
Identities = 77/328 (23%), Positives = 137/328 (41%), Gaps = 27/328 (8%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+L+TG AGFVG+H++ L G V +DNF +++ + + +I D+
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEH----WIGHENFELINHDVV 59
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
+ + + HLA+ A M NP + +N G + +L K + +
Sbjct: 60 EPLY-------IEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR--L 110
Query: 213 VWASSSSVYGLNENVPFSEADRTD----QPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
+ AS+S VYG E P SE P + Y K+ E + + Y G+ + R
Sbjct: 111 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 170
Query: 269 FFTVYGPWGRPDMAYF--SFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326
F +GP + +F LQG+P+TVY + R F Y+ D+V G + ++
Sbjct: 171 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQT---RAFQYVSDLVNGLVALMN 227
Query: 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQ 386
++ NLGN T+ + +++ + ++ + D +I A+
Sbjct: 228 SNVS----SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA-QDDPQKRKPDIKKAK 282
Query: 387 KEFGYRPTTDLQTGLKKFVRWYLSYYGY 414
G+ P L+ GL K + ++ Y
Sbjct: 283 LMLGWEPVVPLEEGLNKAIHYFRKELEY 310
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 233 bits (596), Expect = 1e-74
Identities = 85/327 (25%), Positives = 137/327 (41%), Gaps = 13/327 (3%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL---LNNHGVFVI 147
M +LVTG AGF+G+H L V D + R L + + +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
GDI DA L + ++H AA++ V ++ + +N+ G TLL+ A
Sbjct: 61 HGDIRDAGL--LARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG 118
Query: 208 PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
+V S++ VYG ++ ++E+ + P S YAA+K + +A Y+ YGL +
Sbjct: 119 VGR-VVHVSTNQVYGSIDSGSWTESSPLE-PNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 268 RFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDT 327
R YGP+ P+ F N+L G + +Y +V R++ + DD +G L
Sbjct: 177 RCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANV---REWVHTDDHCRGIALVLA- 232
Query: 328 SAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQK 387
G I+++G +T +L IL L G + ++
Sbjct: 233 --GGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIER 290
Query: 388 EFGYRPTTDLQTGLKKFVRWYLSYYGY 414
E GYRP GL + VRWY G+
Sbjct: 291 ELGYRPQVSFADGLARTVRWYRENRGW 317
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 222 bits (566), Expect = 1e-69
Identities = 70/357 (19%), Positives = 123/357 (34%), Gaps = 44/357 (12%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKK--ARKALLNNHGVFVIEGD 150
L+TG G G++++ L ++G V G+ + ++ + N + GD
Sbjct: 4 ALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGD 63
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
++D L ++ V V +L A + V + ++P + G + LLEA + +
Sbjct: 64 LSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 211 S--IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLR 268
AS+S +YGL + +P E P S YA K I Y YG+
Sbjct: 124 KTRFYQASTSELYGLVQEIPQKETTPFY-PRSPYAVAKLYAYWITVNYRESYGMYACNGI 182
Query: 269 FFTVYGPWGRPDMAYFSFT---RNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSL 325
F P T NI QG +Y G ++D RD+ + D VK L
Sbjct: 183 LFNHESPRRGETFVTRKITRAIANIAQGLESCLYLG--NMDSLRDWGHAKDYVKMQWMML 240
Query: 326 DTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN------------- 372
F + +V + V + L +K + +
Sbjct: 241 QQEQP----EDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPG 296
Query: 373 -----------------GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
+V + + A ++ G++P L+ + + V L
Sbjct: 297 VKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAA 353
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 219 bits (559), Expect = 5e-69
Identities = 84/340 (24%), Positives = 145/340 (42%), Gaps = 20/340 (5%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M VLVTG +G++G+H + L + G V+ LDN N L + L +EGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER--LGGKHPTFVEGD 58
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + L+ ++ A V+H A V ++Q P Y +N+ G + L+ A ++AN +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLSITGLRF 269
+ +++SS++VYG +P+ E+ T P S Y +K E+I SI LR+
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 270 FTVYGPWGRPDMAY-----------FSFTRNILQGKPITVYRGKNHVDL---ARDFTYID 315
F G DM + + + + ++ + RD+ ++
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237
Query: 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDV 375
D+ G + +++ A I+NLG +V +VN + + GD+
Sbjct: 238 DLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR-EGDL 296
Query: 376 PFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY-GY 414
P A+ S A +E +R T L + W + GY
Sbjct: 297 PAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 215 bits (548), Expect = 2e-67
Identities = 93/328 (28%), Positives = 149/328 (45%), Gaps = 14/328 (4%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
L+TG AGF+G+++ L K VVGLDNF + +L + R + +
Sbjct: 19 WLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGD 78
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
L +V+H AA V ++ +P + +NI G + +L A + A Q
Sbjct: 79 IRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQS-F 137
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272
+A+SSS YG + +P E D +P S YA TK E A ++ YG S GLR+F V
Sbjct: 138 TYAASSSTYGDHPGLPKVE-DTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNV 196
Query: 273 YGPWGRPDMAYFS----FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328
+G P+ AY + +T +++QG + + RDF YI++ V+ L + T+
Sbjct: 197 FGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETS---RDFCYIENTVQANLLAA-TA 252
Query: 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN----GDVPFTHANISS 384
A +++N+ ++ +L L L E GDV + A+IS
Sbjct: 253 GLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISK 312
Query: 385 AQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
A K GY P D+ G+ + WY+ +
Sbjct: 313 AAKLLGYAPKYDVSAGVALAMPWYIMFL 340
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 193 bits (491), Expect = 8e-59
Identities = 60/348 (17%), Positives = 122/348 (35%), Gaps = 29/348 (8%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNH---GVFVIEG 149
L+TG G G++++ L ++G V G+ ++ ++ + H + + G
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYG 63
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
D+ D+ L K+ + V T + +L AQ+ V+ + + G + LL+A K+
Sbjct: 64 DLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLI 123
Query: 210 PS--IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
S AS+S +YG + +P E P S Y A K I + Y L
Sbjct: 124 NSVKFYQASTSELYGKVQEIPQKETTPFY-PRSPYGAAKLYAYWIVVNFREAYNLFAVNG 182
Query: 268 RFFTVYGPWGRPDMAYFSFTRNI----LQGKPITVYRGKNHVDLARDFTYIDDIVKGCLG 323
F P + +R++ L + RD+ + D V+
Sbjct: 183 ILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAK---RDWGHAKDYVEAMWL 239
Query: 324 SLDTSAG----PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN------- 372
L A + ++ + + + K + + + G
Sbjct: 240 MLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDL 299
Query: 373 -----GDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYN 415
+V F + + A+++ ++P +++ V + N
Sbjct: 300 KYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRTN 347
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 192 bits (487), Expect = 4e-58
Identities = 83/343 (24%), Positives = 131/343 (38%), Gaps = 33/343 (9%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
VLVTG AG++G+H + L + G V DN +N S+ R +L H + E D+
Sbjct: 4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVA--RLEVLTKHHIPFYEVDLC 61
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D K L K+F V+H A V + Q P Y H+NI G V LLE + N
Sbjct: 62 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSK-F 120
Query: 213 VWASSSSVYGLNENVPFSEA---DRTDQPASLYAATKKAGEEIAHTYN--HIYGLSITGL 267
V++SS++VYG P + P + Y TK A E I + L
Sbjct: 121 VFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAIL 180
Query: 268 RFFTVY----------GPWGRPDMAYFSFTRNIL-QGKPITVYRGKNHVDLARDFTYIDD 316
R+F P G P+ + + + + + ++ +RD T I D
Sbjct: 181 RYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIF---GDDYDSRDGTPIRD 237
Query: 317 IVKGCLGSLDTSA----------GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNV 366
+ + A R +NLG+ TV ++ + + + V
Sbjct: 238 YIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKV 297
Query: 367 IEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
GDV A A++E ++ ++ K +W
Sbjct: 298 TGRR-AGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTT 339
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 188 bits (478), Expect = 8e-57
Identities = 83/343 (24%), Positives = 143/343 (41%), Gaps = 28/343 (8%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKARKALLNNHGVFVIE 148
+++VTG AGF+G++ + V LD KA + V ++
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG----NKANLEAILGDRVELVV 58
Query: 149 GDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208
GDI DA+L+ KL ++H AA++ ++ +P ++H+N G TLLEA + +
Sbjct: 59 GDIADAELVDKLAAK--ADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI 116
Query: 209 QPSIVWASSSSVYG---LNENVPFSEADRTD--------QPASLYAATKKAGEEIAHTYN 257
+ S+ VYG L E++P + P+S Y++TK A + I +
Sbjct: 117 RF--HHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWV 174
Query: 258 HIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDI 317
+G+ T YGP+ + NIL G +Y +V RD+ + +D
Sbjct: 175 RSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNV---RDWIHTNDH 231
Query: 318 VKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPF 377
G L Y I G + V +L ILE+ + K + + G
Sbjct: 232 STGVWAILTKGRMGETYLIGADGEKNNKEVLEL--ILEKMGQPKDAYDHVTDR-AGHDLR 288
Query: 378 THANISSAQKEFGYRPT-TDLQTGLKKFVRWYLSYYGYNRGKR 419
+ S + E G+ P TD GL++ ++WY + + ++
Sbjct: 289 YAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQDWWKAEK 331
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 186 bits (472), Expect = 5e-56
Identities = 95/347 (27%), Positives = 151/347 (43%), Gaps = 26/347 (7%)
Query: 91 MS--VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKK----ARKALLNNHGV 144
M+ VLVTG AG++G+H L L + G V +DNF+N + R L V
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 145 FVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACK 204
E DI D L +LF +F V+H A V ++Q P Y N+ G + LLE K
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 205 SANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY-GLS 263
+ + +V++SS++VYG + +P EA T + Y +K EE+ +
Sbjct: 121 AHGVKN-LVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN 179
Query: 264 ITGLRFFTVYGP----------WGRPDMAYFSFTRN-ILQGKPITVYRGKNHVDL---AR 309
LR+F G G P+ ++ I + + + V+ + R
Sbjct: 180 AVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 239
Query: 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM 369
D+ ++ D+ KG + +L RI+NLG + +V ++V +E+ K V+
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR 299
Query: 370 PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL---SYYG 413
GDV +AN S AQ+E G+ L + RW S +G
Sbjct: 300 R-EGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 183 bits (464), Expect = 4e-55
Identities = 70/326 (21%), Positives = 120/326 (36%), Gaps = 16/326 (4%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
LVTG G G +++ L ++G V GL + + + L + +GD+
Sbjct: 3 ALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT---RWRLRELGIEGDIQYEDGDMA 59
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
DA + + V +LAAQ+ V + P + + G+ LLEA + +P+
Sbjct: 60 DACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRF 119
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272
AS+S ++GL + E S Y K G I Y +GL + F
Sbjct: 120 YQASTSEMFGLIQAERQDENTPFYP-RSPYGVAKLYGHWITVNYRESFGLHASSGILFNH 178
Query: 273 YGPWGRPDMAYFSFTRNILQ---GKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSA 329
P + T + + GK + G +VD RD+ + D V+
Sbjct: 179 ESPLRGIEFVTRKVTDAVARIKLGKQQELRLG--NVDAKRDWGFAGDYVEAM----WLML 232
Query: 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN---GDVPFTHANISSAQ 386
+ + TV + I H+ + + + P +V N + AQ
Sbjct: 233 QQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQ 292
Query: 387 KEFGYRPTTDLQTGLKKFVRWYLSYY 412
+ G++P T L ++ V L
Sbjct: 293 RVLGWKPRTSLDELIRMMVEADLRRV 318
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 183 bits (465), Expect = 1e-54
Identities = 60/338 (17%), Positives = 123/338 (36%), Gaps = 23/338 (6%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+ + +TGA GF+ +H++ LK G V+ D N + + D
Sbjct: 16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE---------FHLVD 66
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ + K+ + V + A G+ + N +++N ++EA + +
Sbjct: 67 LRVMENCLKVTEGVDHVFNLA-ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR 125
Query: 211 SIVWASSSSVYGLNENVP-----FSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSIT 265
+S+ + +P + K A EE+ YN +G+
Sbjct: 126 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECR 185
Query: 266 GLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL--ARDFTYIDDIVKGCLG 323
RF +YGP+G + + R + D R FT+ID+ V+G L
Sbjct: 186 IGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLR 245
Query: 324 SLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANIS 383
+ N+G+ V++ ++ ++ + K + I P V +++ +
Sbjct: 246 LTKSDFR----EPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE--GVRGRNSDNN 299
Query: 384 SAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGKRVN 421
+++ G+ P L+ GL+ W + K +
Sbjct: 300 LIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSD 337
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 180 bits (456), Expect = 9e-54
Identities = 68/329 (20%), Positives = 113/329 (34%), Gaps = 13/329 (3%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKK---ARKALLNNHGVFVIEG 149
L+TG G G++++ L +G V GL ++ ++ +N + +
Sbjct: 4 ALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYA 63
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
D+ DA L + D + V +LAAQ+ V + + P G + LLEA +S
Sbjct: 64 DLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTID 123
Query: 210 PSIVW---ASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITG 266
+ SS + P SE P S YAA+K A Y YGL
Sbjct: 124 SGRTVKYYQAGSSEMFGSTPPPQSETTPFH-PRSPYAASKCAAHWYTVNYREAYGLFACN 182
Query: 267 LRFFTVYGPWGRPDMAYFSFT---RNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLG 323
F P + T I G ++ G +RD+ + D V+
Sbjct: 183 GILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQA--SRDWGFAGDYVEAMWL 240
Query: 324 SLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANIS 383
L G+T + L + K + + +V + S
Sbjct: 241 MLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFR-PAEVDNLQGDAS 299
Query: 384 SAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
A++ G++P + +K V L
Sbjct: 300 KAKEVLGWKPQVGFEKLVKMMVDEDLELA 328
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 178 bits (453), Expect = 2e-53
Identities = 54/334 (16%), Positives = 115/334 (34%), Gaps = 43/334 (12%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
V + G G VG+ + L++RGD + L + ++
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE-----------------------LNLL 41
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHS-YVHSNIAGLVTLLEACKSANPQPS 211
D++ + F + V AA+ G A + +++ N+ ++ A +
Sbjct: 42 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNK- 100
Query: 212 IVWASSSSVYGLNENVPFSE----ADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
+++ SS +Y P +E + YA K AG ++ +YN YG +
Sbjct: 101 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 160
Query: 268 RFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL------ARDFTYIDDIVKGC 321
+YGP + +L+ + V + R+F ++DD+
Sbjct: 161 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAAS 220
Query: 322 LGSLDTSA------GPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDV 375
+ ++ + N+G T+ +L + + + K +
Sbjct: 221 IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK-PDGT 279
Query: 376 PFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 409
P +++ + G+ L+ GL +W+L
Sbjct: 280 PRKLLDVTRL-HQLGWYHEISLEAGLASTYQWFL 312
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 168 bits (426), Expect = 3e-49
Identities = 64/340 (18%), Positives = 125/340 (36%), Gaps = 31/340 (9%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+L+TG GF+G++++ +G ++ DN + L + + GDI
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA---TDNLHWLSSLGNFEFVHGDIR 59
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
+ + +L HLA Q + ++ NP N+ G + LLEA + N +I
Sbjct: 60 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 119
Query: 213 VWASSSSVYGLNENVPFSEADRTD---------------QPASLYAATKKAGEEIAHTYN 257
+++S++ VYG E ++E + S Y +K A ++ Y
Sbjct: 120 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 179
Query: 258 HIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQ--------GKPITVYRGKNHVDLAR 309
I+GL+ R ++YG + KP T+ V R
Sbjct: 180 RIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQV---R 236
Query: 310 DFTYIDDIVKGCLGSLD-TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE 368
D + +D++ +L S + +++ +L +LE + + + +
Sbjct: 237 DVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP 296
Query: 369 MPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWY 408
+ D A+I + P + G++K W
Sbjct: 297 VR-ESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWT 335
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 153 bits (386), Expect = 4e-43
Identities = 59/381 (15%), Positives = 117/381 (30%), Gaps = 58/381 (15%)
Query: 91 MSVLVTGAAGFVGTHVSLAL-KKRGDGVVGLDNFNNYYDPSLKKAR-------------- 135
M VLV G AG++G+H AL + VV +D+ + S
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 136 KALLNNHGVFVIEGDINDAKLLAKL------FDAVAFTHVMHLAAQAGVRYAMQNPHSYV 189
K + + GD+ + L + DAV ++ ++ V
Sbjct: 63 KPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVV 122
Query: 190 HSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249
LL C S + ++ ++ N + + P S Y +K
Sbjct: 123 GILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIA 182
Query: 250 EEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFS------------------------ 285
E + YG+ LR+F G D+
Sbjct: 183 ERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRL 242
Query: 286 -FTRNILQGKPITVYRGKNHV---DLARDFTYIDDIVKGCL------GSLDTSAGPAPYR 335
+ K + ++ RD+ ++ D+ + L + +
Sbjct: 243 TIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFS 302
Query: 336 IFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT 395
+FNLG + +V +++ + + GD + A A++ G++P
Sbjct: 303 VFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRR-EGDPAYLVAASDKAREVLGWKPKY 361
Query: 396 DLQTGLKK-FVRWYLSY-YGY 414
D + + ++ ++ GY
Sbjct: 362 DTLEAIMETSWKFQRTHPNGY 382
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 140 bits (352), Expect = 1e-38
Identities = 67/333 (20%), Positives = 113/333 (33%), Gaps = 14/333 (4%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G V VTG GF G +SL L+ G V G + AR G+ G
Sbjct: 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV----ADGMQSEIG 63
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
DI D L + V H+AAQ VR + P +N+ G V LLEA +
Sbjct: 64 DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGV 123
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNH---------IY 260
++V +S Y E + + Y+ +K E + +Y + +
Sbjct: 124 KAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQH 183
Query: 261 GLSITGLRFFTVYGPWGRPDMAYFS-FTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK 319
G ++ +R V G R Q +P+ + + +
Sbjct: 184 GTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLL 243
Query: 320 GCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTH 379
A A F + V +V + ++ A + + +
Sbjct: 244 LAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLK 303
Query: 380 ANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
+ S A+ + G+ P +L T L+ V W+ ++
Sbjct: 304 LDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWL 336
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 119 bits (298), Expect = 1e-30
Identities = 71/372 (19%), Positives = 115/372 (30%), Gaps = 53/372 (14%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF-NNYYDPSLKK-------------AR 135
G V+V G G+ G +L L K+ V +DN +D L +R
Sbjct: 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 136 KALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQA---GVRYAMQNPHSYVHSN 192
L + + GDI D + LA+ F + V+H Q H+N
Sbjct: 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 120
Query: 193 IAGLVTLLEACKSANPQPSIVWASSSS------------VYGLNENVPFSEADRTDQPAS 240
+ G + +L A K + +V + + N Q +S
Sbjct: 121 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 180
Query: 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGP-----------------WGRPDMAY 283
Y +K +G+ T L VYG A
Sbjct: 181 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240
Query: 284 FSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN-- 341
F G P+TVY R + I D V+ ++ A +R+FN
Sbjct: 241 NRFCVQAAVGHPLTVYGKGGQT---RGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQ 297
Query: 342 TSPVTVPKLVNILERHLKVKAKKNVIEMPGN-GDVPFTHANISSAQKEFGYRPTTDLQTG 400
S + LV L + KK + P + + +A + E G P +
Sbjct: 298 FSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-MELGLEPHYLSDSL 356
Query: 401 LKKFVRWYLSYY 412
L + + + +
Sbjct: 357 LDSLLNFAVQFK 368
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 118 bits (295), Expect = 1e-30
Identities = 55/348 (15%), Positives = 110/348 (31%), Gaps = 36/348 (10%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
M VL+ G GF+G H++ L + V GLD ++ LN+ +EG
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR--------FLNHPHFHFVEG 52
Query: 150 DINDAKLLAKLFDA---VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA 206
DI+ + V V R ++ N+ + ++ K
Sbjct: 53 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI 112
Query: 207 NPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSIT- 265
+ S +E+ ++P +Y+ +K+ + + Y GL T
Sbjct: 113 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 172
Query: 266 -------GLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV 318
G R + A N+++G PI + G D + +
Sbjct: 173 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEAL 232
Query: 319 KGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM--------- 369
+ + I N + ++ +L +L + ++
Sbjct: 233 YRIIENAGNRCDGEIINIGN--PENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVES 290
Query: 370 -----PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 412
G DV +I +A + + P D+Q + + + ++L
Sbjct: 291 SSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 338
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 98.6 bits (243), Expect = 9e-24
Identities = 49/320 (15%), Positives = 99/320 (30%), Gaps = 19/320 (5%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDI 151
++VTG AGF+G+++ AL +G ++ +DN + N I +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK----------FVNLVDLNIADYM 51
Query: 152 NDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPS 211
+ L ++ F V + + + Y+ N L P
Sbjct: 52 DKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPF 111
Query: 212 IVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFT 271
+ +S+++ G + S Y+ +
Sbjct: 112 LYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 171
Query: 272 VYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGP 331
+ MA +F N + + + RDF Y+ D+
Sbjct: 172 GPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVN----LWFLEN 227
Query: 332 APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGN---GDVPFTHANISSAQKE 388
IFNLG + + + + K K + I P FT A++++ +
Sbjct: 228 GVSGIFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRYQAFTQADLTNLRAA 286
Query: 389 FGYRPTTDLQTGLKKFVRWY 408
+P + G+ +++ W
Sbjct: 287 GYDKPFKTVAEGVTEYMAWL 306
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 96.4 bits (238), Expect = 7e-23
Identities = 56/345 (16%), Positives = 90/345 (26%), Gaps = 37/345 (10%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G VLVTGA GFV +HV L + G V G + +L+K A +
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLA-NLQKRWDAKYPGRFETAVVE 69
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
D+ ++ A + V V I G + L A +
Sbjct: 70 DMLKQGAYDEVIKGAAGVAHIA-----SVVSFSNKYDEVVTPAIGGTLNALRAAAATPSV 124
Query: 210 PSIVWASSSSVYGLNENVPFSEADRTDQ-------------------PASLYAATKKAGE 250
V SS+ + + +YAA+K E
Sbjct: 125 KRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAE 184
Query: 251 EIA--HTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNI---LQGKPITVYRGKNHV 305
A + ++ + G P+ S + + G+
Sbjct: 185 LAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPP- 243
Query: 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKN 365
+ + DI LG L P R G ++ + K
Sbjct: 244 ---QYYVSAVDIGLLHLGCLVL---PQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPA 297
Query: 366 VIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLS 410
G F A K G ++ +K V +
Sbjct: 298 DFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 342
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 81.4 bits (199), Expect = 9e-18
Identities = 36/278 (12%), Positives = 76/278 (27%), Gaps = 37/278 (13%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+L+ GA G++G HV+ A G L + S K G ++ G I+
Sbjct: 6 ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 65
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D + V + V + + NI A +
Sbjct: 66 D-----------HASLVEAVKNVDVVISTVGSLQIESQVNI----------IKAIKEVGT 104
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272
V S +G + + + G+ T +
Sbjct: 105 VKRFFPSEFGNDVDNVHAVEPAKSVFEVKA---------KVRRAIEAEGIPYTYVSSNCF 155
Query: 273 YGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPA 332
G + R + + + F +DI + ++D
Sbjct: 156 AGYFLRSLAQAGLTAPPRDKVVILGDGNARVV------FVKEEDIGTFTIKAVDDPR-TL 208
Query: 333 PYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMP 370
++ + +++ +LV + E+ + +K +
Sbjct: 209 NKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEE 246
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 79.5 bits (194), Expect = 3e-17
Identities = 48/322 (14%), Positives = 91/322 (28%), Gaps = 48/322 (14%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M +L+TGA G +G + LK + V+ D + D
Sbjct: 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQ------------------------DLD 37
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
I + + K F+ V++ AA V + N G A + +
Sbjct: 38 ITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKN--LAAAAYSVGA 95
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
IV S+ V+ P +E D + ++ + + +R
Sbjct: 96 EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGEN-----FVKALNPKYYIVRTA 150
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330
+YG + + + V D T D+ + L +D
Sbjct: 151 WLYGDGNNFVKTMINLGK---THDELKVVH-----DQVGTPTSTVDLARVVLKVIDEK-- 200
Query: 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI---EMPGNGDVP-FTHANISSAQ 386
Y F+ + + R + K E P P ++ +
Sbjct: 201 --NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLE 258
Query: 387 KEFGYRPTTDLQTGLKKFVRWY 408
G + + LK+++
Sbjct: 259 LTTGDIT-REWKESLKEYIDLL 279
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 79.4 bits (194), Expect = 4e-17
Identities = 35/275 (12%), Positives = 69/275 (25%), Gaps = 32/275 (11%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
VL+ G G++G + A G L + K G +IE ++
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNID-KVQMLLYFKQLGAKLIEASLD 64
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
D + L V + +I + L+EA K A
Sbjct: 65 DHQRLVDALKQVDVVISAL-------------AGGVLSHHILEQLKLVEAIKEAGNIK-R 110
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272
S + A + + + T +
Sbjct: 111 FLPSEFGMDPDIME-----------HALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMF 159
Query: 273 YGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPA 332
G + I ++ + DD+ + S+D
Sbjct: 160 AGYFAGSLAQLDGHMMPPRDKVLI-----YGDGNVKGIWVDEDDVGTYTIKSID-DPQTL 213
Query: 333 PYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVI 367
++ + ++ +++ I ER + K I
Sbjct: 214 NKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYI 248
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 77.3 bits (188), Expect = 2e-16
Identities = 48/327 (14%), Positives = 98/327 (29%), Gaps = 39/327 (11%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
M++L+ G G VG + +L G+ ++ LD + + GD
Sbjct: 1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEF--------------------CGD 39
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
++ K +A+ + +++ AA V A P N A +
Sbjct: 40 FSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNAT--SVEAIAKAANETGA 97
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFF 270
+V S+ V+ ++P+ E P ++Y TK AGE+ + + T +
Sbjct: 98 WVVHYSTDYVFPGTGDIPWQE-TDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYA 156
Query: 271 TVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330
+ + + + + + D +L+
Sbjct: 157 GKGNNFAKTMLRLAKERQTLS-------VINDQYGAPTGAELLADCTAHAIRVALNKPEV 209
Query: 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVP-------FTHANIS 383
Y + G T+ LV R + + P + N
Sbjct: 210 AGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTE 269
Query: 384 SAQKEFGYRPTTDLQTGLKKFVRWYLS 410
Q+ F + G+K+ + +
Sbjct: 270 KFQRNFDLIL-PQWELGVKRMLTEMFT 295
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 75.6 bits (184), Expect = 3e-16
Identities = 35/272 (12%), Positives = 67/272 (24%), Gaps = 27/272 (9%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
VLVTGA+G G V LK+ D V + + +
Sbjct: 6 VLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPA 65
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
++ L + +P Q +
Sbjct: 66 FQG----------IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQ 115
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIA-HTYNHIYGLSITGLRFFT 271
+ A+ + V D P + + Y G T +R
Sbjct: 116 IDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGG 175
Query: 272 VYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGP 331
+ G + + V + + D+ + C+ +L
Sbjct: 176 LLDKEGG--------------VRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEE-- 219
Query: 332 APYRIFNLGNTSPVTVPKLVNILERHLKVKAK 363
A + F+LG+ T + +V ++
Sbjct: 220 AKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 251
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 58.9 bits (141), Expect = 3e-10
Identities = 39/335 (11%), Positives = 69/335 (20%), Gaps = 48/335 (14%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
+ V GA G G + G V + + L V + +G +
Sbjct: 6 IAVVGATGRQGASLIRVAAAVGHHVRAQVH-----SLK-GLIAEELQAIPNVTLFQGPLL 59
Query: 153 DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSI 212
+ L G A N S IA L +A K A
Sbjct: 60 NNVPLMD-------------TLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHY 106
Query: 213 VWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTV 272
+++S Y GL T +
Sbjct: 107 IYSSMPDHSLYGPWPAVPMWAPKFTV---------------ENYVRQLGLPSTFVYAGIY 151
Query: 273 YGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPA 332
+ F + D+ L
Sbjct: 152 NNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIP--LPWLDAEHDVGPALLQIFKDGPQKW 209
Query: 333 PYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG---NGDVPFTHANISSAQKEF 389
L ++ ++ R L + +++P ++P + A +
Sbjct: 210 NGHRIALT-FETLSPVQVCAAFSRALNRRVT--YVQVPKVEIKVNIPVGYREQLEAIEVV 266
Query: 390 ------GYRPTTDLQTGLKKFVRWYLSYYGYNRGK 418
Y P + + G G
Sbjct: 267 FGEHKAPYFPLPEFSRPAAGSPKGLGPANGKGAGA 301
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 4e-07
Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 25/200 (12%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150
+ + GA G G + G V L ++ V+ GD
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGD 54
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
+ A + K V+ L N S G ++ A K+
Sbjct: 55 VLQAADVDKTVAGQ--DAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDK 105
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTY-NHIYGLSITGLRF 269
+V +S+ + VP TD ++ +++G + HI +TG
Sbjct: 106 -VVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYT 164
Query: 270 FTVYGPWG-----RPDMAYF 284
T+ G + D+ +F
Sbjct: 165 VTLDGRGPSRVISKHDLGHF 184
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 47.7 bits (113), Expect = 9e-07
Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 7/195 (3%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G ++TG +G ++ + G V+ + +KA K++ + +
Sbjct: 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGR----HSDVGEKAAKSVGTPDQIQFFQH 61
Query: 150 DINDAKLLAKLFDAV--AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
D +D KLFDA AF V L AG+ + L L+
Sbjct: 62 DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGT 121
Query: 208 PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
+ I + + N+ E D Y A+K A ++ + L +
Sbjct: 122 -RLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDV 180
Query: 268 RFFTVYGPWGRPDMA 282
R TV+ + + +
Sbjct: 181 RVNTVHPGYIKTPLV 195
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (105), Expect = 7e-06
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G LVTGAA +G + AL +G V +D +N K A I+
Sbjct: 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVD-WNLEAGVQCKAALHEQFEPQKTLFIQC 61
Query: 150 DINDAKLLAKLFDAVA--FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC---- 203
D+ D + L F V F + L AGV +N + N+ +++
Sbjct: 62 DVADQQQLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYM 120
Query: 204 -KSANPQPSIVWASSS 218
K + I+ SS
Sbjct: 121 SKQNGGEGGIIINMSS 136
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 42.1 bits (98), Expect = 6e-05
Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 7/195 (3%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG--VFVI 147
G +VTG+ +G ++ AL +G +V + ++K R L HG V
Sbjct: 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD---AAEIEKVRAGLAAQHGVKVLYD 60
Query: 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
D++ + + L D + + L +
Sbjct: 61 GADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFH 120
Query: 208 PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
+ + +G N+ + S Y A K + T + G+
Sbjct: 121 GTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHG--VVGFTKVTALETAGQGI 178
Query: 268 RFFTVYGPWGRPDMA 282
+ W R +
Sbjct: 179 TANAICPGWVRTPLV 193
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (95), Expect = 2e-04
Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 25/204 (12%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
LVTGA+G +G V+ AL ++G VVG + L K+ + D++
Sbjct: 13 ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE-ELAAECKSAGYPGTLIPYRCDLS 71
Query: 153 DAKLLAKLFDAV--AFTHVMHLAAQAGV-------RYAMQNPHSYVHSNIAGLVTLLEAC 203
+ + + +F A+ + V AG+ + + N+ L
Sbjct: 72 NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREA 131
Query: 204 -----KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNH 258
+ I+ +S S + + Y+ATK A +
Sbjct: 132 YQSMKERNVDDGHIININSMSGHRVLPL----------SVTHFYSATKYAVTALTEGLRQ 181
Query: 259 IYGLSITGLRFFTVYGPWGRPDMA 282
+ T +R + A
Sbjct: 182 ELREAQTHIRATCISPGVVETQFA 205
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 40.2 bits (94), Expect = 2e-04
Identities = 30/171 (17%), Positives = 51/171 (29%), Gaps = 33/171 (19%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G VLVTG A +G ++ A + G V D L+ K + G +
Sbjct: 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCD---------LRPEGKEVAEAIGGAFFQV 55
Query: 150 DINDAKLLAKLFDAV--AFTHVMHLAAQAGV-------RYAMQNPHSYVHSNIAGLVTLL 200
D+ D + + + A V L A + + + N+ + L
Sbjct: 56 DLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLS 115
Query: 201 EAC---KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248
+IV +S +Q + Y A+K
Sbjct: 116 ALAAREMRKVGGGAIVNVASVQ------------GLFAEQENAAYNASKGG 154
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (94), Expect = 2e-04
Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
++TG++ +G ++ + G V + + ++ A ++ V + D+
Sbjct: 8 AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 67
Query: 153 DAKLLAKLFDAV--AFTHVMHLAAQAGV 178
++ F + L AG
Sbjct: 68 TDAGQDEILSTTLGKFGKLDILVNNAGA 95
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.0 bits (93), Expect = 3e-04
Identities = 33/202 (16%), Positives = 57/202 (28%), Gaps = 30/202 (14%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G+ LVTGA +G AL G VV + + G+ +
Sbjct: 5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTR-------TNSDLVSLAKECPGIEPVCV 57
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEA-- 202
D+ D K + ++ A + + N+ + + +
Sbjct: 58 DLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVA 117
Query: 203 --CKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY 260
+ SIV SS + N+ Y++TK A +
Sbjct: 118 RDMINRGVPGSIVNVSSMVAHVTFPNL------------ITYSSTKGAMTMLTKAMAMEL 165
Query: 261 GLSITGLRFFTVYGPWGRPDMA 282
G +R +V DM
Sbjct: 166 G--PHKIRVNSVNPTVVLTDMG 185
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 40.0 bits (93), Expect = 3e-04
Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
+V++TG++ +G ++ + G V + + + + K+ ++ V +
Sbjct: 5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVA 64
Query: 150 DINDAKLLAKLFDAV--AFTHVMHLAAQAGV 178
D+ ++ ++ F + L AG
Sbjct: 65 DVTTEDGQDQIINSTLKQFGKIDVLVNNAGA 95
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 39.6 bits (92), Expect = 3e-04
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG--VFVI 147
G LVTG + +G ++ L + G VV +A + L +G
Sbjct: 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASR----NLEEASEAAQKLTEKYGVETMAF 60
Query: 148 EGDINDAKLLAKLFDAV--AFTHVMHLAAQAGV 178
D+++ + + KL +AV F + + AG+
Sbjct: 61 RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI 93
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 39.7 bits (92), Expect = 4e-04
Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 6/162 (3%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG--VFVI 147
G +TG +G ++ L G V LK + + + G V I
Sbjct: 25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASR----KMDVLKATAEQISSQTGNKVHAI 80
Query: 148 EGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
+ D+ D ++ + +P + N +T + +A
Sbjct: 81 QCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAF 140
Query: 208 PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAG 249
I + G + T + +A+ KAG
Sbjct: 141 VTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAG 182
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 39.6 bits (92), Expect = 4e-04
Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 6/163 (3%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G SV++TG++ +G ++ K G V + + + ++ KA + + +
Sbjct: 4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVA 63
Query: 150 DINDAKLLAKLFDAV--AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEA-CKSA 206
D+ +A + + F + L A + + + + + ++
Sbjct: 64 DVTEASGQDDIINTTLAKFGKIDILVNNA--GANLADGTANTDQPVELYQKTFKLNFQAV 121
Query: 207 NPQPSIVWASSSSVYGLNENVPFSEADRTDQPA-SLYAATKKA 248
G NV A YA K A
Sbjct: 122 IEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAA 164
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 39.0 bits (90), Expect = 5e-04
Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 8/194 (4%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG-VFVIE 148
G LVTGA G +G +L L + G + LD +L+KA ++
Sbjct: 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLD----MNREALEKAEASVREKGVEARSYV 60
Query: 149 GDINDAKLLAKLFDAVAFTH-VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
D+ + + D+V + P S+ V + + +
Sbjct: 61 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFH 120
Query: 208 PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGL 267
++ + YG N + + Y +K A + T +
Sbjct: 121 VLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAP--YNI 178
Query: 268 RFFTVYGPWGRPDM 281
R + + P
Sbjct: 179 RVNAISPGYMGPGF 192
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (90), Expect = 6e-04
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG--VFVI 147
G +VTG A +G + L + G VV + + + L V I
Sbjct: 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPI 71
Query: 148 EGDINDAKLLAKLFDAVAFTH 168
+ +I + + + L + T
Sbjct: 72 QCNIRNEEEVNNLVKSTLDTF 92
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 38.8 bits (90), Expect = 7e-04
Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 14/163 (8%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G +V++TG A +G + G VV D D + L
Sbjct: 5 GKTVIITGGARGLGAEAARQAVAAGARVVLAD----VLDEEGAATAREL--GDAARYQHL 58
Query: 150 DINDAKLLAKLFDAV--AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN 207
D+ + ++ F V L AG+ M V + L
Sbjct: 59 DVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGM 118
Query: 208 PQ--PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248
P++ A S+ N+ + S Y A+K
Sbjct: 119 KTVIPAMKDAGGGSIV----NISSAAGLMGLALTSSYGASKWG 157
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 38.5 bits (89), Expect = 0.001
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
++TG AG +G + + G VV D D +K + + + +
Sbjct: 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIAD----IADDHGQKVCNNIGSPDVISFVHC 61
Query: 150 DINDAKLLAKLFDA 163
D+ + + L D
Sbjct: 62 DVTKDEDVRNLVDT 75
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.3 bits (88), Expect = 0.001
Identities = 27/206 (13%), Positives = 61/206 (29%), Gaps = 17/206 (8%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
VLV G G +G+ A + R V +D + + + ++ F +
Sbjct: 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASID-----VVENEEASASVIVKMTDSFTEQA 56
Query: 150 DINDAKLLAKL----FDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAG-LVTLLEACK 204
D A++ L DA+ A + +N +I ++ A K
Sbjct: 57 DQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATK 116
Query: 205 SANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSI 264
+ A + + + + +++ + + + + +
Sbjct: 117 HLKEGGLLTLAGAKAALDGTPGMIGYGMAK----GAVHQLCQSLAGKNSGMPSGA---AA 169
Query: 265 TGLRFFTVYGPWGRPDMAYFSFTRNI 290
+ T+ P R M F+
Sbjct: 170 IAVLPVTLDTPMNRKSMPEADFSSWT 195
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 38.1 bits (88), Expect = 0.001
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 9/93 (9%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG--VFVI 147
G ++TGA +G +++ G VV D + + G F
Sbjct: 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSD-----INADAANHVVDEIQQLGGQAFAC 65
Query: 148 EGDINDAKLLAKLFDAV--AFTHVMHLAAQAGV 178
DI + L+ L D V L AG
Sbjct: 66 RCDITSEQELSALADFAISKLGKVDILVNNAGG 98
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 0.001
Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 25/216 (11%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G VLVTGA +G AL G VV + + + G+ +
Sbjct: 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSR-------TQADLDSLVRECPGIEPVCV 59
Query: 150 DINDAKLLAKLFDA-----VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEA-- 202
D+ D + + + + + Q + + N+ ++ + +
Sbjct: 60 DLGDWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVA 119
Query: 203 --CKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIY 260
+ +IV SS N + + +L TK E+ +
Sbjct: 120 RGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTK----GALDMLTKVMALELGP-----H 170
Query: 261 GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPI 296
+ + + V G+ + + +L P+
Sbjct: 171 KIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPL 206
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 37.9 bits (87), Expect = 0.001
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG--VFVIEGD 150
LVTGA +G ++L L K G V D Y+ + KA + +N G ++ D
Sbjct: 4 ALVTGAGQGIGKAIALRLVKDGFAVAIAD-----YNDATAKAVASEINQAGGHAVAVKVD 58
Query: 151 INDAKLLAKLFDAVAFTH 168
++D + + T
Sbjct: 59 VSDRDQVFAAVEQARKTL 76
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 37.4 bits (86), Expect = 0.002
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG--VFVI 147
+++VTG +G + A+ G V + + + + G
Sbjct: 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYR----SAADAVEVTEKVGKEFGVKTKAY 64
Query: 148 EGDINDAKLLAKLFDAVA 165
+ D+++ ++ K +
Sbjct: 65 QCDVSNTDIVTKTIQQID 82
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 37.6 bits (87), Expect = 0.002
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG--VFVI 147
++TG A +G ++ G + D +A + N G V +
Sbjct: 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADL-------VPAPEAEAAIRNLGRRVLTV 57
Query: 148 EGDINDAKLLAKLFDAV--AFTHVMHLAAQAGV 178
+ D++ + V F L AG+
Sbjct: 58 KCDVSQPGDVEAFGKQVISTFGRCDILVNNAGI 90
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 37.4 bits (86), Expect = 0.002
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG-VFVIE 148
G LVTGA +G +++ L +RG V+ + S ++ A+ N ++
Sbjct: 18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS---TESAEEVVAAIKKNGSDAACVK 74
Query: 149 GDINDAKLLAKLFDAVA 165
++ + + ++F+
Sbjct: 75 ANVGVVEDIVRMFEEAV 91
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.8 bits (84), Expect = 0.003
Identities = 25/179 (13%), Positives = 61/179 (34%), Gaps = 18/179 (10%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN 152
V+V G G +G+ + KK G V+ +D N +A +L + E + +
Sbjct: 5 VIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN------DQADSNILVDGNKNWTEQEQS 58
Query: 153 DAKLLAKLF-----DAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNI--AGLVTLLEACKS 205
+ A D V A + ++N + ++ + + L
Sbjct: 59 ILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHL 118
Query: 206 ANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSI 264
+ +++++ + + A A+++ T + + ++ L+I
Sbjct: 119 KPGGLLQLTGAAAAMGPTPSMIGYGMAK-----AAVHHLTSSLAAKDSGLPDNSAVLTI 172
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 36.5 bits (84), Expect = 0.003
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG 149
G LVTG A VG V L G V D + + + A L +FV
Sbjct: 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDI-----NEAAGQQLAAELGERSMFV-RH 59
Query: 150 DINDAKLLAKLFDAV--AFTHVMHLAAQAGV 178
D++ + AV + L AG+
Sbjct: 60 DVSSEADWTLVMAAVQRRLGTLNVLVNNAGI 90
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.003
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGV 117
SV + GA+G G + + ++G
Sbjct: 15 KSVFILGASGETGRVLLKEILEQGLFS 41
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.3 bits (82), Expect = 0.004
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGV 117
VL+ GA G G H+ +
Sbjct: 5 VLLAGATGLTGEHLLDRILSEPTLA 29
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 35.5 bits (81), Expect = 0.004
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 5/124 (4%)
Query: 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKA-RKALLNNHGVFVIEG 149
M V + GA+G VG+ +L L K D + S+ K +
Sbjct: 1 MKVTIIGASGRVGSATALLLAKEP---FMKDLVLIGREHSINKLEGLREDIYDALAGTRS 57
Query: 150 DINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ 209
D N + + + V+ + + + M +N + +
Sbjct: 58 DANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMD-LAKTNAKIVGKYAKKIAEICDT 116
Query: 210 PSIV 213
V
Sbjct: 117 KIFV 120
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 36.1 bits (83), Expect = 0.004
Identities = 21/158 (13%), Positives = 49/158 (31%), Gaps = 7/158 (4%)
Query: 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG--VFVIEGD 150
LVTGA +G ++ L K V+ + + + + G GD
Sbjct: 13 ALVTGAGRGIGREIAKMLAKSVSHVICISR-----TQKSCDSVVDEIKSFGYESSGYAGD 67
Query: 151 INDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP 210
++ + ++++ + + H N + ++ V
Sbjct: 68 VSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQ 127
Query: 211 SIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248
I ++ YG N+ + + Y+++K
Sbjct: 128 PISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAG 165
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 421 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.95 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.95 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.95 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.95 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.95 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.95 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.95 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.95 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.95 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.95 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.95 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.95 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.95 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.95 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.95 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.95 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.95 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.95 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.94 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.94 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.94 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.94 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.94 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.94 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.94 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.94 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.94 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.94 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.94 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.94 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.94 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.94 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.94 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.93 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.93 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.93 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.93 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.93 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.93 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.93 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.93 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.93 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.92 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.92 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.92 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.92 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.92 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.92 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.92 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.91 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.91 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.91 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.9 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.9 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.89 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.89 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.89 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.89 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.89 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.88 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.88 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.88 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.86 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.86 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.85 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.84 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.83 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.83 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.82 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.81 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.81 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.78 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.74 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.46 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.28 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.25 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.13 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.06 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.0 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.95 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.92 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.87 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.87 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.86 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.81 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.81 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.81 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.77 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.69 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.69 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.68 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.67 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.64 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.62 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.61 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.6 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.6 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.57 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.52 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.51 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.48 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.47 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.46 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.45 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.44 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.41 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.38 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.35 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.15 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.14 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.12 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.1 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.04 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.03 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 97.01 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.01 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.93 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.92 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.9 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.9 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.83 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.76 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.74 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.74 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.71 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.7 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.67 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.59 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.53 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.51 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.51 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.5 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.5 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.5 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.48 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.47 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.38 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.32 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 96.32 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.3 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.29 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.22 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.17 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.17 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.11 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.09 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.06 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.06 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.02 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 96.01 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 96.01 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.94 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.92 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.9 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.88 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.86 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 95.82 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.77 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 95.68 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.6 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.47 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.46 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.41 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.38 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.34 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 95.32 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.31 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.28 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.26 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.22 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 95.18 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.16 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.15 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.13 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.09 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.06 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.06 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 95.06 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.97 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.9 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 94.88 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.87 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.78 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 94.71 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.69 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.68 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.55 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.44 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.36 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.31 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 94.3 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 94.2 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.2 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 94.1 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 93.99 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 93.97 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 93.96 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 93.93 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 93.9 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 93.85 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.82 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.77 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 93.75 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.75 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 93.72 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.71 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 93.67 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 93.66 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 93.48 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 93.44 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 93.35 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 93.31 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.3 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 93.16 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 93.06 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 93.04 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 92.98 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 92.81 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 92.65 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 92.6 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 92.57 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.54 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 92.5 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 92.5 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 92.43 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.43 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.39 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 92.39 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 92.32 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 92.31 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.66 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.65 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 91.57 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 91.22 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 90.86 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 90.56 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 90.45 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 89.92 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 89.9 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 89.77 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 89.66 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 89.63 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 89.33 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 89.14 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 89.13 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 88.81 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 88.65 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 88.21 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 88.13 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 87.9 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 87.86 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 87.68 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 87.31 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 87.27 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 87.19 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 86.88 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 86.85 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 86.84 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 86.66 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 86.5 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 86.39 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 86.28 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 86.27 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 86.27 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 85.82 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 85.77 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 85.72 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 85.27 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 84.88 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 84.75 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 84.54 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 83.95 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 83.91 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 83.87 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 82.83 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 82.31 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 82.19 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 82.15 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 82.03 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 81.81 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 81.64 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 81.57 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 81.33 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 81.16 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 80.74 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 80.63 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 80.47 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 80.27 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 80.26 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 80.14 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-50 Score=387.23 Aligned_cols=317 Identities=21% Similarity=0.262 Sum_probs=255.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhH-HHH-HHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSL-KKA-RKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|+|||||||||||++|+++|+++|++|++++|..+..+... +.. ........+++++++|++|.+++.+++++++||+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 78999999999999999999999999999999654433222 111 1122345689999999999999999999999999
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCC--CeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ--PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK 246 (421)
|||+|+..+......++..++++|+.||.+|+++|++.++. .|||++||+++||.....+++|+++. .|.++|+.||
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~-~P~~~Y~~sK 160 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAK 160 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCC-CCCSHHHHHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCC-CCCChHHHHH
Confidence 99999998877777888999999999999999999987653 37999999999998888889998876 6889999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCh---HHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHH
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMA---YFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLG 323 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 323 (421)
+++|.+++.+++.+|++++++||++||||+...... +..++..+..+....+.. +++++.++|+|++|+|++++.
T Consensus 161 ~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~--g~~~~~r~~~~v~D~~~a~~~ 238 (357)
T d1db3a_ 161 LYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL--GNMDSLRDWGHAKDYVKMQWM 238 (357)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEE--SCTTCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEE--CCCCeeecceeechHHHHHHH
Confidence 999999999999999999999999999998765543 334445555665544333 678999999999999999999
Q ss_pred hhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceec------------------------------CCCCC
Q 043169 324 SLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE------------------------------MPGNG 373 (421)
Q Consensus 324 ~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~------------------------------~~~~~ 373 (421)
+++.. .+++|||++++++|+.|+++.+.+.+|........+ ..++.
T Consensus 239 ~~~~~----~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 314 (357)
T d1db3a_ 239 MLQQE----QPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPA 314 (357)
T ss_dssp TTSSS----SCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCC
T ss_pred HHhCC----CCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEeeccccCCCc
Confidence 98765 357999999999999999999999998644321110 01234
Q ss_pred CCCcccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhCC
Q 043169 374 DVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 374 ~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
+.....+|++|++++|||+|+++++|+|+++++++.+..++
T Consensus 315 ~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~kk 355 (357)
T d1db3a_ 315 EVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 355 (357)
T ss_dssp C-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHT
T ss_pred cccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 45556789999999999999999999999999988877654
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=1.5e-48 Score=370.67 Aligned_cols=310 Identities=27% Similarity=0.432 Sum_probs=270.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCc------EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDG------VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~------V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
|+||||||+||||++|++.|+++|++ |+.+++......... ........++.++.+|+.+...........
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRAN---LAPVDADPRLRFVHGDIRDAGLLARELRGV 77 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGG---GGGGTTCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhH---hhhhhcCCCeEEEEeccccchhhhcccccc
Confidence 68999999999999999999999975 455555433222211 112234578999999999999888877665
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHH
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAA 244 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~ 244 (421)
|.|+|+|+.........++...+++|+.|+.+++++|++.+++ +||++||.++||.....+++|+++. .|.+.|+.
T Consensus 78 --d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~-~~I~~Ss~~~yg~~~~~~~~E~~~~-~p~~~Y~~ 153 (322)
T d1r6da_ 78 --DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAA 153 (322)
T ss_dssp --CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBCTTSCC-CCCSHHHH
T ss_pred --ceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCc-eEEEeecceeecCCCCCCCCCCCCC-CCCCHHHH
Confidence 9999999998877778889999999999999999999999975 9999999999999888889988866 78899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHh
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGS 324 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 324 (421)
+|.++|.+++.+.+++|++++++||++||||++..+..++.++..+..++++.++ +++++.++|+|++|+|++++.+
T Consensus 154 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~---~~g~~~r~~i~v~D~a~ai~~~ 230 (322)
T d1r6da_ 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLY---GDGANVREWVHTDDHCRGIALV 230 (322)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEE---TTSCCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEe---cCCCeEEccEEHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888899999999999999987 6889999999999999999999
Q ss_pred hhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHHH
Q 043169 325 LDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKF 404 (421)
Q Consensus 325 l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~ 404 (421)
++.+ ..+++||+++++++++.|+++.+.+.+|.+........+++.......+|++|+++.|||+|+++++|+|+++
T Consensus 231 ~~~~---~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~eegI~~~ 307 (322)
T d1r6da_ 231 LAGG---RAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLART 307 (322)
T ss_dssp HHHC---CTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHH
T ss_pred HhCC---CCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCCCHHHHHHHH
Confidence 9987 3478999999999999999999999999887655555555666666789999999999999999999999999
Q ss_pred HHHHHHHhC
Q 043169 405 VRWYLSYYG 413 (421)
Q Consensus 405 ~~~~~~~~~ 413 (421)
++||+++.+
T Consensus 308 i~w~~~n~~ 316 (322)
T d1r6da_ 308 VRWYRENRG 316 (322)
T ss_dssp HHHHHHCHH
T ss_pred HHHHHHhHH
Confidence 999998653
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=8.3e-49 Score=378.20 Aligned_cols=313 Identities=23% Similarity=0.380 Sum_probs=259.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEE-EeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVG-LDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
|+||||||+||||++|+++|+++|++|++ +++......... ........+++++++|++|.+.+.+++++.++|+|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V 77 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES---LSDISESNRYNFEHADICDSAEITRIFEQYQPDAV 77 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGG---GTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHH---HHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 68999999999999999999999998554 554333222111 11223456899999999999999999999899999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC--------CCeEEEEccccccCCCCCCC---------CCCC
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP--------QPSIVWASSSSVYGLNENVP---------FSEA 232 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~--------~~riV~~SS~~v~g~~~~~~---------~~e~ 232 (421)
||+|+..++..+..++..++++|+.|+.+++++|++.+. .++||++||+.+||.....+ ..++
T Consensus 78 ihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e 157 (361)
T d1kewa_ 78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred EECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCccc
Confidence 999999887778889999999999999999999987542 23899999999998654332 2223
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecc
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFT 312 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (421)
..+..|.+.|+.||.++|.++..+.+.+|++++++||++||||+...+..++.++.++.+++++.++ +++++.++|+
T Consensus 158 ~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~---g~g~~~r~~i 234 (361)
T d1kewa_ 158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDWL 234 (361)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEE---TTSCCEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEe---CCCCeEEeCE
Confidence 3344678999999999999999999999999999999999999988888889999999999999887 6889999999
Q ss_pred cHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccc------ee-cCCCCCCCCcccCChHHH
Q 043169 313 YIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKN------VI-EMPGNGDVPFTHANISSA 385 (421)
Q Consensus 313 ~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~------~~-~~~~~~~~~~~~~d~~ka 385 (421)
|++|+|+++..+++.. ..+++|||++++++++.|+++.+.+.++...+.. .. ...++.+.....+|++|+
T Consensus 235 ~v~D~a~ai~~~~~~~---~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 311 (361)
T d1kewa_ 235 YVEDHARALHMVVTEG---KAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKI 311 (361)
T ss_dssp EHHHHHHHHHHHHHHC---CTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHH
T ss_pred EHHHHHHHHHHHHhcC---CCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCHHHH
Confidence 9999999999999876 3478999999999999999999988775432211 11 122445666778999999
Q ss_pred HHHcCCCcCCCHHHHHHHHHHHHHHHh
Q 043169 386 QKEFGYRPTTDLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 386 ~~~lG~~p~~~l~e~l~~~~~~~~~~~ 412 (421)
++.|||+|+++++|+|+++++||+++.
T Consensus 312 ~~~lgw~P~~~l~e~i~~ti~w~~~n~ 338 (361)
T d1kewa_ 312 SRELGWKPLETFESGIRKTVEWYLANT 338 (361)
T ss_dssp HHHHCCCCSCCHHHHHHHHHHHHHHCH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHhH
Confidence 999999999999999999999998863
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-47 Score=364.77 Aligned_cols=319 Identities=25% Similarity=0.390 Sum_probs=268.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++|+++|+++|++|++++|............ ......++.++++|++|.+.+.++++..+||+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI--ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHH--HHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHH--HhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 68999999999999999999999999999998665544433322 2234468999999999999999999988899999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+|+...++.+..++...+++|+.||.+++++|++.+++ ++|++||.++|+.....+..|++....|.+.|+.+|.++|
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~-~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e 157 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCC-EEEecCcceEEccccccccccccccCCCcchHHHHHhhhh
Confidence 999988777788889999999999999999999999976 9999999999998877777777777678999999999999
Q ss_pred HHHHHHHHH-hCCcEEEEEeccccCCCCCC----------CChHHHHHHHHHc-CCCeEEEecC---CCCcceeecccHH
Q 043169 251 EIAHTYNHI-YGLSITGLRFFTVYGPWGRP----------DMAYFSFTRNILQ-GKPITVYRGK---NHVDLARDFTYID 315 (421)
Q Consensus 251 ~~~~~~~~~-~gi~~~~vrp~~v~G~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~i~v~ 315 (421)
.++.++..+ .+++++++||+++|||+... +..++.++..+.. ++++.++... .++.+.++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~ 237 (338)
T d1udca_ 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHH
T ss_pred HHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEe
Confidence 999987766 48999999999999986432 2355566655554 4466665321 2478899999999
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT 395 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~ 395 (421)
|++.++..+.........+++||+++++++++.|+++.+.+.+|.+.+..+.+. ++++.....+|++|+++.|||+|++
T Consensus 238 D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lgwkp~~ 316 (338)
T d1udca_ 238 DLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-REGDLPAYWADASKADRELNWRVTR 316 (338)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECC-CTTCCSBCCBCCHHHHHHHCCCCCC
T ss_pred ehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCC-CCCCCCEeeECHHHHHHHHCCCcCC
Confidence 999998887775534456789999999999999999999999998887766664 3556667789999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC
Q 043169 396 DLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 396 ~l~e~l~~~~~~~~~~~~ 413 (421)
+++|+|+++++||+++.+
T Consensus 317 ~l~egi~~ti~w~~~~~~ 334 (338)
T d1udca_ 317 TLDEMAQDTWHWQSRHPQ 334 (338)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhchh
Confidence 999999999999999855
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=3.1e-47 Score=364.53 Aligned_cols=318 Identities=30% Similarity=0.450 Sum_probs=270.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH--hhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA--LLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+.|+|||||||||||++|+++|.++|++|++++|............... .....++.++.+|+.|...........
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~- 92 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV- 92 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC-
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc-
Confidence 36789999999999999999999999999999998665443333222221 122367999999999999888887766
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
+.++|+|+......+..++...+++|+.|+.+|+++|++.+++ +||++||+++||.....+++|+++. .|.+.|+.+
T Consensus 93 -~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 169 (341)
T d1sb8a_ 93 -DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVEDTIG-KPLSPYAVT 169 (341)
T ss_dssp -SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCc-eEEEcccceeeCCCCCCCccCCCCC-CCCCcchHH
Confidence 9999999988777778889999999999999999999999975 9999999999998888889888766 788999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHH
Q 043169 246 KKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGC 321 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 321 (421)
|.++|.++..+.+.++++++++||++||||+..+. ..+..++..++.|+++.++ +++.+.++|+|++|+|.|+
T Consensus 170 K~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~---g~g~~~r~~i~v~D~~~a~ 246 (341)
T d1sb8a_ 170 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQAN 246 (341)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEc---CCCCEEEEEEEEeccchhh
Confidence 99999999999999999999999999999976543 4677888999999999988 6889999999999999999
Q ss_pred HHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccc----eecCCCCCCCCcccCChHHHHHHcCCCcCCCH
Q 043169 322 LGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKN----VIEMPGNGDVPFTHANISSAQKEFGYRPTTDL 397 (421)
Q Consensus 322 ~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~----~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l 397 (421)
..++.... ...+++||+++++.+|+.|+++.+.+.++.+.... .....+.++.....+|++|+++.|||+|++++
T Consensus 247 ~~~~~~~~-~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~p~~sl 325 (341)
T d1sb8a_ 247 LLAATAGL-DARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYDV 325 (341)
T ss_dssp HHHHTCCG-GGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCCCCH
T ss_pred hhhhhccc-cccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHCCCcCCCH
Confidence 99887653 24578999999999999999999999998653211 11112345666678899999999999999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 043169 398 QTGLKKFVRWYLSYYG 413 (421)
Q Consensus 398 ~e~l~~~~~~~~~~~~ 413 (421)
+|+|+++++||+++++
T Consensus 326 ~~gi~~ti~wy~~~~k 341 (341)
T d1sb8a_ 326 SAGVALAMPWYIMFLK 341 (341)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999875
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-47 Score=360.90 Aligned_cols=302 Identities=25% Similarity=0.417 Sum_probs=254.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++|+++|+++|++|++++|.......... ......++.+...|+.+ .++. ++|+||
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~----~~~~~~~~d~~~~~~~~-----~~~~--~~d~Vi 70 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVE----HWIGHENFELINHDVVE-----PLYI--EVDQIY 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTG----GGTTCTTEEEEECCTTS-----CCCC--CCSEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHH----HhcCCCceEEEehHHHH-----HHHc--CCCEEE
Confidence 789999999999999999999999999999985543222211 12233456666666643 3333 469999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCC----CCCCCChHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADR----TDQPASLYAATK 246 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~----~~~~~~~Y~~sK 246 (421)
|+|+......+..++...+++|+.|+.+|+++|++.++ ++|++||+++||.....+++|+.. +..|.+.|+.||
T Consensus 71 hlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK 148 (312)
T d2b69a1 71 HLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGK 148 (312)
T ss_dssp ECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHH
T ss_pred ECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHH
Confidence 99998877667788889999999999999999999885 899999999999877667766542 335778999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--CChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHh
Q 043169 247 KAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP--DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGS 324 (421)
Q Consensus 247 ~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 324 (421)
.++|.+++.+++.+|++++++||++||||+... ...++.++.++..++++.++ +++.+.++|+|++|++++++.+
T Consensus 149 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~---~~g~~~r~~i~v~D~~~~~~~~ 225 (312)
T d2b69a1 149 RVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGLVAL 225 (312)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEE---SSSCCEEECEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEe---CCCCeeEccEEHHHHHHHHHHH
Confidence 999999999999999999999999999998654 34678999999999999988 6889999999999999999999
Q ss_pred hhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHHH
Q 043169 325 LDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKF 404 (421)
Q Consensus 325 l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~ 404 (421)
++.. .+++||+++++++++.|+++.+.+.++.+.++.+.+.. .++.....+|++|+++.|||+|+++++|+|+++
T Consensus 226 ~~~~----~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~ 300 (312)
T d2b69a1 226 MNSN----VSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA-QDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKA 300 (312)
T ss_dssp HTSS----CCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC-TTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHH
T ss_pred Hhhc----cCCceEecCCcccchhhHHHHHHHHhCCCCceEECCCC-CCCCCeeeECHHHHHHHHCCCCCCCHHHHHHHH
Confidence 8755 35789999999999999999999999998877766643 556667788999999999999999999999999
Q ss_pred HHHHHHHhC
Q 043169 405 VRWYLSYYG 413 (421)
Q Consensus 405 ~~~~~~~~~ 413 (421)
++||+++++
T Consensus 301 i~w~~~~~~ 309 (312)
T d2b69a1 301 IHYFRKELE 309 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.1e-46 Score=351.80 Aligned_cols=312 Identities=23% Similarity=0.228 Sum_probs=262.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++|+++|+++|++|++++|..+...... .......+++.++++|++|.+.+.+++....+++++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~---l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 77 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWR---LRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVY 77 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHH---HHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHH---HHHhcccCCcEEEEccccChHHhhhhhccccccccc
Confidence 68999999999999999999999999999999765433211 111223468999999999999999999998899999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+|+.........++..++.+|+.|+.+++++|++.+.+++|++.||..+||.....+.+|+++. .|.+.|+.+|.++|
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 156 (321)
T d1rpna_ 78 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPF-YPRSPYGVAKLYGH 156 (321)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred cccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCc-cccChhHHHHHHHH
Confidence 99998877767778889999999999999999999998879999999999998888788877665 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCh---HHHHHHHHHcCC-CeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMA---YFSFTRNILQGK-PITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
.++.++.+.++++++++||+++|||....+.. +..++.++..++ +...+ +++++.++|+|++|+|++++.+++
T Consensus 157 ~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~---g~g~~~r~~i~v~D~~~~~~~~~~ 233 (321)
T d1rpna_ 157 WITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRL---GNVDAKRDWGFAGDYVEAMWLMLQ 233 (321)
T ss_dssp HHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE---SCTTCEEECEEHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEE---CCCCeEEccEEeHHHHHHHHHHHh
Confidence 99999999999999999999999998766543 334444555544 34444 688999999999999999999998
Q ss_pred cCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecC---CCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHH
Q 043169 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM---PGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKK 403 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~---~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~ 403 (421)
++. ++.||+++++..++.++++.+.+.++.+.+...... -++.+......|++|+++.|||+|+++++|+|++
T Consensus 234 ~~~----~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~e~i~~ 309 (321)
T d1rpna_ 234 QDK----ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRM 309 (321)
T ss_dssp SSS----CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHHHH
T ss_pred cCC----cCCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCCCHHHHHHH
Confidence 763 467999999999999999999999998754333322 2345666778899999999999999999999999
Q ss_pred HHHHHHHHhC
Q 043169 404 FVRWYLSYYG 413 (421)
Q Consensus 404 ~~~~~~~~~~ 413 (421)
+++|+.+..+
T Consensus 310 tv~~~l~~~~ 319 (321)
T d1rpna_ 310 MVEADLRRVS 319 (321)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998654
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=4.7e-46 Score=356.99 Aligned_cols=309 Identities=22% Similarity=0.310 Sum_probs=258.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC--CCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN--NYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
++|+|||||||||||++|+++|+++|++|.+++++. ..... .........++.++.+|++|.+.+.++++.+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~----~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~-- 74 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNK----ANLEAILGDRVELVVGDIADAELVDKLAAKA-- 74 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG----GGTGGGCSSSEEEEECCTTCHHHHHHHHTTC--
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccH----HHHHHhhcCCeEEEEccCCCHHHHHHHHhhh--
Confidence 468999999999999999999999998765554432 21111 1112234578999999999999999999887
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCC------------CCCCCCCCC
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNE------------NVPFSEADR 234 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~------------~~~~~e~~~ 234 (421)
+.|+|+|+......+..++...+++|+.|+.++++++++.+. ++|++||..+||... ...+.|++.
T Consensus 75 ~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~--k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~ 152 (346)
T d1oc2a_ 75 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETN 152 (346)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSC
T ss_pred hhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc--cccccccceEecccCccccccccccCcccccccCCC
Confidence 999999999887777788999999999999999999999985 899999999997421 122333333
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
. .|.+.|+.+|.++|.+++.+.+.+|++++++||++||||+......+..++..+..+.++.++ +++++.++|+|+
T Consensus 153 ~-~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~---~~g~~~r~~i~v 228 (346)
T d1oc2a_ 153 Y-NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY---GEGKNVRDWIHT 228 (346)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEE---TTSCCEEECEEH
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEe---CCCCccccccch
Confidence 3 678999999999999999999999999999999999999888788888888888999988887 688999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPT 394 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~ 394 (421)
+|+|++++.++..+ ..++.||++++++.++.|+++.+.+.++.+.........+++......+|++|+++.|||+|+
T Consensus 229 ~D~a~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~P~ 305 (346)
T d1oc2a_ 229 NDHSTGVWAILTKG---RMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQ 305 (346)
T ss_dssp HHHHHHHHHHHHHC---CTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCS
T ss_pred hhHHHHHHHHHhhc---ccCccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHHHHCCCCc
Confidence 99999999988876 457899999999999999999999999886543333334455566677899999999999999
Q ss_pred C-CHHHHHHHHHHHHHHHh
Q 043169 395 T-DLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 395 ~-~l~e~l~~~~~~~~~~~ 412 (421)
+ +|+|+|+++++||+++.
T Consensus 306 ~t~l~e~i~~ti~w~~~n~ 324 (346)
T d1oc2a_ 306 FTDFSEGLEETIQWYTDNQ 324 (346)
T ss_dssp CCCHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 6 69999999999999864
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.6e-45 Score=348.08 Aligned_cols=321 Identities=28% Similarity=0.394 Sum_probs=265.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC----ChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY----DPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
|+||||||+||||++|+++|+++|++|+++++..... ...............++.++++|++|.+.+.+++.+..+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 82 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccccc
Confidence 7899999999999999999999999999998643322 111112222334567899999999999999999999989
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK 246 (421)
++++|+||..++..+..++...+++|+.|+.++++++++.+++ +||++||+.+|+........++.....+.++|+.+|
T Consensus 83 ~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~-~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~k 161 (346)
T d1ek6a_ 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSK 161 (346)
T ss_dssp EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHHH
T ss_pred ccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcc-cccccccceeeeccccccccccccccccCChHHHHH
Confidence 9999999998887778889999999999999999999999986 999999999999777655555555556788999999
Q ss_pred HHHHHHHHHHHHH-hCCcEEEEEeccccCCCCC----------CCChHHHHHHHHH-cCCCeEEEec---CCCCcceeec
Q 043169 247 KAGEEIAHTYNHI-YGLSITGLRFFTVYGPWGR----------PDMAYFSFTRNIL-QGKPITVYRG---KNHVDLARDF 311 (421)
Q Consensus 247 ~~~e~~~~~~~~~-~gi~~~~vrp~~v~G~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~ 311 (421)
..+|..+.++.+. .++..+++||+++|||+.. .+..++.++..+. +++++.++.. ..++.+.+||
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdf 241 (346)
T d1ek6a_ 162 FFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241 (346)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECE
T ss_pred HHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeE
Confidence 9999999998776 5899999999999998642 2334555555444 4666666642 1357788999
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGY 391 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~ 391 (421)
+|++|+|.++..++........+++|||++++.+++.|+++.+.+.+|.+.+....+. ++++.....+|++|+++.|||
T Consensus 242 i~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~-~~~e~~~~~~d~~k~~~~lgw 320 (346)
T d1ek6a_ 242 IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR-REGDVAACYANPSLAQEELGW 320 (346)
T ss_dssp EEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCCSEECBCCHHHHHTTCC
T ss_pred EEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCC-CCCCCCEeeECHHHHHHHHCC
Confidence 9999999999888766544566889999999999999999999999999887766653 466777788999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHHHhC
Q 043169 392 RPTTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 392 ~p~~~l~e~l~~~~~~~~~~~~ 413 (421)
+|+++++|+|+++++||+++-+
T Consensus 321 ~p~~slee~I~~~i~w~~~n~~ 342 (346)
T d1ek6a_ 321 TAALGLDRMCEDLWRWQKQNPS 342 (346)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT
T ss_pred CcCCCHHHHHHHHHHHHHhCHh
Confidence 9999999999999999997643
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-45 Score=349.43 Aligned_cols=309 Identities=23% Similarity=0.350 Sum_probs=253.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHH-HhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAK-LFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~-~~~~~~~d~ 168 (421)
|+||||||+||||++|+++|+++| ++|+++++..+... .....++++++++|+++.+++.+ +.++ +|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~--------~~~~~~~~~~i~~Di~~~~~~~~~~~~~--~d~ 70 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--------RFLNHPHFHFVEGDISIHSEWIEYHVKK--CDV 70 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG--------GGTTCTTEEEEECCTTTCSHHHHHHHHH--CSE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchh--------hhccCCCeEEEECccCChHHHHHHHHhC--CCc
Confidence 689999999999999999999999 58999988543211 12235789999999998766655 5554 599
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCC------CCCCCCChH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEAD------RTDQPASLY 242 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~------~~~~~~~~Y 242 (421)
|||+|+.........++...+.+|+.|+.+++++|.+.+. +++++||+.+|+........|.. +...|...|
T Consensus 71 Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~--~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y 148 (342)
T d2blla1 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK--RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (342)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC--EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred cccccccccccccccCCccccccccccccccccccccccc--cccccccccccccccccccccccccccccccCCCcchh
Confidence 9999999887777788889999999999999999999885 78899999999876655544432 233456889
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 243 AATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 243 ~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
+.||.++|.++..+.+++|++++++||+.+|||+... ......++..++.|+++.++ +++++.++|+|+
T Consensus 149 ~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~g~~~r~~i~v 225 (342)
T d2blla1 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDI 225 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEG---GGSCCEEECEEH
T ss_pred hhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCcccc---CCCCeeeeeccc
Confidence 9999999999999999999999999999999986432 22567888999999999887 678999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCC-ccCHHHHHHHHHHHhCCccccceecCC--------------CCCCCCccc
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTS-PVTVPKLVNILERHLKVKAKKNVIEMP--------------GNGDVPFTH 379 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~-~~t~~el~~~l~~~~g~~~~~~~~~~~--------------~~~~~~~~~ 379 (421)
+|+|+++..+++.+.....+++|||++++ ++|+.|+++.+.+.++........+.. ...+..+..
T Consensus 226 ~D~~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (342)
T d2blla1 226 RDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRK 305 (342)
T ss_dssp HHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCC
T ss_pred ccccceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccccccccccccc
Confidence 99999999999886444568999998765 489999999999999876655443311 111234556
Q ss_pred CChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhCC
Q 043169 380 ANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 380 ~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 414 (421)
+|++|++++|||+|+++++|+|+++++||+++.+.
T Consensus 306 ~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~~ 340 (342)
T d2blla1 306 PSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (342)
T ss_dssp BCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred cCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcCC
Confidence 79999999999999999999999999999998764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.4e-44 Score=348.95 Aligned_cols=305 Identities=21% Similarity=0.278 Sum_probs=253.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.++|+||||||+||||++|+++|+++|++|+++++....... .......+..+|+.+.+.+.++++++ |
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~--d 81 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT---------EDMFCDEFHLVDLRVMENCLKVTEGV--D 81 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC---------GGGTCSEEEECCTTSHHHHHHHHTTC--S
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh---------hhcccCcEEEeechhHHHHHHHhhcC--C
Confidence 478999999999999999999999999999999885543211 11245678899999999999998876 9
Q ss_pred EEEEcccccCchh-hccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCC------CCCCCCCC
Q 043169 168 HVMHLAAQAGVRY-AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEA------DRTDQPAS 240 (421)
Q Consensus 168 ~vi~~Ag~~~~~~-~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~------~~~~~~~~ 240 (421)
+|||+|+...... ....+...+.+|+.|+.+++++|++.+++ +||++||..+|+.....+..++ ..+..|.+
T Consensus 82 ~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~ 160 (363)
T d2c5aa1 82 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 160 (363)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred eEeecccccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccccccccccccccccccccccccCCcCCCCC
Confidence 9999998876543 34667788999999999999999999986 9999999999986655544432 23446789
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-----ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 241 LYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD-----MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 241 ~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
.|+.||+++|.+++++.+++|++++++||+++|||++... ..................+ +++.+.++|+|++
T Consensus 161 ~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~rd~i~v~ 237 (363)
T d2c5aa1 161 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW---GDGLQTRSFTFID 237 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEE---SCSCCEECCEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCccccccccccccccccccccccccccc---CCCCeEEEEeehh
Confidence 9999999999999999999999999999999999976432 2233444445556666666 6889999999999
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTT 395 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~ 395 (421)
|++++++.+++.. .+++||++++.++++.|+++++.+.+|.+.++...+. +.+.....+|++|+++.|||+|++
T Consensus 238 D~~~~~~~~~~~~----~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~--~~~~~~~~~d~ska~~~LGw~p~~ 311 (363)
T d2c5aa1 238 ECVEGVLRLTKSD----FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG--PEGVRGRNSDNNLIKEKLGWAPNM 311 (363)
T ss_dssp HHHHHHHHHHHSS----CCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECC--CCCCSBCEECCHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHhCC----CCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCC--CCCccccccCHHHHHHHhCCCCCC
Confidence 9999999998755 3578999999999999999999999998877665554 345566678999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC
Q 043169 396 DLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 396 ~l~e~l~~~~~~~~~~~~ 413 (421)
+++|+|+++++||+++.+
T Consensus 312 sleegi~~ti~w~~~~~~ 329 (363)
T d2c5aa1 312 RLKEGLRITYFWIKEQIE 329 (363)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998864
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-44 Score=345.31 Aligned_cols=315 Identities=19% Similarity=0.221 Sum_probs=255.3
Q ss_pred CEE-EEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhH-HH--HHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 91 MSV-LVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSL-KK--ARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 91 k~v-lITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~--~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
|+| |||||+||||++|+++|+++|++|++++|..+...... .. .........+++++.+|++|.+.+.+++.+..+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 466 99999999999999999999999999999765433211 00 011112336789999999999999999999999
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCC--CeEEEEccccccCCCCCCCCCCCCCCCCCCChHHH
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQ--PSIVWASSSSVYGLNENVPFSEADRTDQPASLYAA 244 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~ 244 (421)
++++|+|+.........++...+++|+.||.++++++++.+.. +++|++||++|||.....+++|+++. .|.++|+.
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~-~P~~~Yg~ 159 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF-YPRSPYGA 159 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC-CCCSHHHH
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCC-CCCCHHHH
Confidence 9999999988777777888888999999999999999998753 38999999999998888889988876 78899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHH----HHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHH
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYF----SFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKG 320 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 320 (421)
||.++|.++..+.+.++++++++||+++|||+........ .++.....+.+...+ +++++.++|+|++|++++
T Consensus 160 sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~---g~g~~~r~~i~v~D~~~a 236 (347)
T d1t2aa_ 160 AKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL---GNLDAKRDWGHAKDYVEA 236 (347)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEE---SCTTCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeec---CCCcceeeeeEecHHHHH
Confidence 9999999999999999999999999999999766554333 344455566767666 688999999999999999
Q ss_pred HHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecC--------------------CCCCCCCcccC
Q 043169 321 CLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEM--------------------PGNGDVPFTHA 380 (421)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~--------------------~~~~~~~~~~~ 380 (421)
+..+++... .+.|+++.....++.+....+...++........+. .++.+.....+
T Consensus 237 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~ 312 (347)
T d1t2aa_ 237 MWLMLQNDE----PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQG 312 (347)
T ss_dssp HHHHHHSSS----CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCB
T ss_pred HHHHhhcCC----CccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCCCcCEeeE
Confidence 999998762 356889998999999999999999987543222110 12234445567
Q ss_pred ChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhC
Q 043169 381 NISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 381 d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 413 (421)
|++|++++|||+|+++++|+|+++++|..+.++
T Consensus 313 d~skak~~Lgw~P~~sl~e~i~~~I~~~~~~~k 345 (347)
T d1t2aa_ 313 DCTKAKQKLNWKPRVAFDELVREMVHADVELMR 345 (347)
T ss_dssp CCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988776553
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-43 Score=340.79 Aligned_cols=317 Identities=26% Similarity=0.361 Sum_probs=251.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|.||||||+||||++|+++|+++|++|+++++.......... ........+++++++|++|.+.++++++..+||+||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~--~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 79 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVA--RLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 79 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHH--HHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHH--hHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence 689999999999999999999999999999876554433322 223334578999999999999999999988999999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC----CCCCCCCCCCCCCChHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN----VPFSEADRTDQPASLYAATK 246 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~----~~~~e~~~~~~~~~~Y~~sK 246 (421)
|+|+...+.....++..+..+|+.|+.+++++|++.+++ ++|++||..+||.... .+++|+.+. .|.+.|+.||
T Consensus 80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~-~~i~~SS~~vyg~~~~~~~~~~~~e~~~~-~p~~~Y~~sK 157 (347)
T d1z45a2 80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYGHTK 157 (347)
T ss_dssp ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSBCTTSCC-CCCSHHHHHH
T ss_pred EccccccccccccCcccccccchhhhHHHHHHHHhcccc-eEEeecceeeecCcccCCCCCccccccCC-CCCChhHhHH
Confidence 999998777777888999999999999999999999976 9999999999986543 445555544 6789999999
Q ss_pred HHHHHHHHHHHHH--hCCcEEEEEeccccCCCCC----------CCChHHHHHHHHH-cCCCeEEEecC---CCCcceee
Q 043169 247 KAGEEIAHTYNHI--YGLSITGLRFFTVYGPWGR----------PDMAYFSFTRNIL-QGKPITVYRGK---NHVDLARD 310 (421)
Q Consensus 247 ~~~e~~~~~~~~~--~gi~~~~vrp~~v~G~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~ 310 (421)
.++|.+++++.+. .+++++++||+++||+... .+..++.+...+. +++++.++... .++...+|
T Consensus 158 ~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d 237 (347)
T d1z45a2 158 YAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 237 (347)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEEC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeee
Confidence 9999999999765 5799999999999987431 2334555555444 34455544211 23567888
Q ss_pred cccHHHHHHHHHHhhhcC----CCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHH
Q 043169 311 FTYIDDIVKGCLGSLDTS----AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQ 386 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~----~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~ 386 (421)
++++.|++.+++.+++.. .....+++||+++++++++.|+++.+.+.+|.+.++...+. ++.+.....+|++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~d~sk~~ 316 (347)
T d1z45a2 238 YIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR-RAGDVLNLTAKPDRAK 316 (347)
T ss_dssp EEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----------CCCCCBCCHHHH
T ss_pred eeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCC-CCCCCCEeeECHHHHH
Confidence 999999999998887642 12345799999999999999999999999999877665554 3556667789999999
Q ss_pred HHcCCCcCCCHHHHHHHHHHHHHHHh
Q 043169 387 KEFGYRPTTDLQTGLKKFVRWYLSYY 412 (421)
Q Consensus 387 ~~lG~~p~~~l~e~l~~~~~~~~~~~ 412 (421)
++|||+|+++++|+|+++++||+++-
T Consensus 317 ~~lGw~p~~~lee~i~~ti~w~~~np 342 (347)
T d1z45a2 317 RELKWQTELQVEDSCKDLWKWTTENP 342 (347)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999983
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.5e-42 Score=338.25 Aligned_cols=318 Identities=23% Similarity=0.305 Sum_probs=247.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC-------------CCCCh-hHHHHHHHhhcCCceEEEEcccCCHH
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN-------------NYYDP-SLKKARKALLNNHGVFVIEGDINDAK 155 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~-------------~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~ 155 (421)
||+||||||+||||++|+++|+++|++|+++|... ..... .............+++++.+|++|.+
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 79999999999999999999999999999997311 11111 11112223334578999999999999
Q ss_pred HHHHHhhccCCcEEEEcccccCchhhccC---CchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCC-
Q 043169 156 LLAKLFDAVAFTHVMHLAAQAGVRYAMQN---PHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSE- 231 (421)
Q Consensus 156 ~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~---~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e- 231 (421)
.+.+++++++||+|||+||......+..+ +..++.+|+.||.+++++|++.+...++++.||..+|+.... +..|
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~~~ 159 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEG 159 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBCSS
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccc-ccccc
Confidence 99999999999999999998766555444 346789999999999999999998778999999988875432 1111
Q ss_pred ------C------CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC-----------------CCh
Q 043169 232 ------A------DRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRP-----------------DMA 282 (421)
Q Consensus 232 ------~------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~-----------------~~~ 282 (421)
+ ..+..|.+.|+.||+++|.++..+.++++++++++||++||||+... ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 1 11345778999999999999999999999999999999999997542 235
Q ss_pred HHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHh---C
Q 043169 283 YFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHL---K 359 (421)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~---g 359 (421)
+..++.++..++++.++ +++.+.+||+|++|++++++.++++.........++. +++.+++.|+++.+.+.. +
T Consensus 240 i~~~~~~~~~~~~~~i~---g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~-~~~~~si~el~~~i~~~~~~~~ 315 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVY---GKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQ-FTEQFSVNELASLVTKAGSKLG 315 (393)
T ss_dssp HHHHHHHHHHTCCEEEE---TTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEE-CSEEEEHHHHHHHHHHHHHTTT
T ss_pred hhhhhHHhhcCCeeEEe---eecccccccccccchHHHHHHHHHhhcccceeeeecC-CCCeeEHHHHHHHHHHHHHhhC
Confidence 67888899999999998 6889999999999999999999987622111223333 446799999999998875 3
Q ss_pred CccccceecCCC-CCCCCcccCChHHHHHHcCCCcCCCHHHHHHHHHHHHHHHhC
Q 043169 360 VKAKKNVIEMPG-NGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYG 413 (421)
Q Consensus 360 ~~~~~~~~~~~~-~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 413 (421)
.+.+....+.++ ..+..+...|++|++ +|||+|+++++++++++++|++++.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~LGw~P~~~~~~~i~~~~~~~~~~k~ 369 (393)
T d1i24a_ 316 LDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKD 369 (393)
T ss_dssp CCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGG
T ss_pred CCcceeeccCCCCCCCccEecCCHHHHH-HcCCccccCHHHHHHHHHHHHHHHHH
Confidence 344444344333 344555677889986 59999999999999999999988754
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.3e-42 Score=331.51 Aligned_cols=315 Identities=22% Similarity=0.239 Sum_probs=250.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhH-HH--HHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSL-KK--ARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~--~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|++||||||||||+||+++|+++|++|++++|..+...... .. ..........+.++.+|+++.+.+.+.++..++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 78999999999999999999999999999999665332211 00 0111123467899999999999999999998999
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcC----CCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSAN----PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYA 243 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~----~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~ 243 (421)
+|||+|+........+++...+..|+.|+.++++++++.. ...++++.||+.+|+.. ..+++|+++. .|.+.|+
T Consensus 82 ~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~-~~~~~E~~~~-~p~~~Y~ 159 (339)
T d1n7ha_ 82 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST-PPPQSETTPF-HPRSPYA 159 (339)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS-CSSBCTTSCC-CCCSHHH
T ss_pred hhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccC-CCCCCCCCCC-CCcchhh
Confidence 9999999987776778889999999999999999986532 23378888888877644 3567777665 7899999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHH---HHHHcC-CCeEEEecCCCCcceeecccHHHHHH
Q 043169 244 ATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFT---RNILQG-KPITVYRGKNHVDLARDFTYIDDIVK 319 (421)
Q Consensus 244 ~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~i~v~Dva~ 319 (421)
.+|.++|.++..+.+.++++++++||++||||+...+.....+. .....+ .+..+. +++.+.++|+|++|+|+
T Consensus 160 ~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~---g~~~~~rd~~~v~D~a~ 236 (339)
T d1n7ha_ 160 ASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL---GNLQASRDWGFAGDYVE 236 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEE---SCTTCEEECEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEe---CCCCccccceeeehHHH
Confidence 99999999999999999999999999999999876655443333 233333 334443 67899999999999999
Q ss_pred HHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceec---CCCCCCCCcccCChHHHHHHcCCCcCCC
Q 043169 320 GCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE---MPGNGDVPFTHANISSAQKEFGYRPTTD 396 (421)
Q Consensus 320 a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~---~~~~~~~~~~~~d~~ka~~~lG~~p~~~ 396 (421)
++..+++++. ...+++..+...+..++++.+.+.++...+..... ..++.+......|++|+++.|||+|+++
T Consensus 237 ~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~P~~~ 312 (339)
T d1n7ha_ 237 AMWLMLQQEK----PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVG 312 (339)
T ss_dssp HHHHHHTSSS----CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSC
T ss_pred HHHHHHhcCC----CCccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCCcCCC
Confidence 9999999773 35567777888999999999999999875433321 2234556667789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 043169 397 LQTGLKKFVRWYLSYYGY 414 (421)
Q Consensus 397 l~e~l~~~~~~~~~~~~~ 414 (421)
++|+|++|++||.+..++
T Consensus 313 le~gi~~ti~~~~~~~~~ 330 (339)
T d1n7ha_ 313 FEKLVKMMVDEDLELAKR 330 (339)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999988654
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=9e-42 Score=331.52 Aligned_cols=320 Identities=20% Similarity=0.344 Sum_probs=252.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCCC-----CChhHHHHHHHh---------hcCCceEEEEcccCCH
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKK-RGDGVVGLDNFNNY-----YDPSLKKARKAL---------LNNHGVFVIEGDINDA 154 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~-~g~~V~~~~r~~~~-----~~~~~~~~~~~~---------~~~~~v~~~~~Dl~d~ 154 (421)
+|+||||||+||||++|+++|++ .|++|+++|+.... .....+...... .....+.++.+|++|.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 68999999999999999999986 68999999852211 111111111110 1234688999999999
Q ss_pred HHHHHHhhccC-CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCC-------
Q 043169 155 KLLAKLFDAVA-FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNEN------- 226 (421)
Q Consensus 155 ~~~~~~~~~~~-~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~------- 226 (421)
+.+.++++..+ +|+|||+|+.........++...+++|+.++.++++++++.+++ +++++||..+|+....
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC-----CC
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCc-ccccccccccccccccccccccc
Confidence 99999998774 49999999988777677788889999999999999999999976 9999999998875433
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC---------ChHHHHHHHHH------
Q 043169 227 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD---------MAYFSFTRNIL------ 291 (421)
Q Consensus 227 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~---------~~~~~~~~~~~------ 291 (421)
.++.|+... .|.+.|+.+|+.+|.++.++.+.+|++++++||+++|||+.... ..++.++..+.
T Consensus 161 ~~~~e~~~~-~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~ 239 (383)
T d1gy8a_ 161 EPIDINAKK-SPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPD 239 (383)
T ss_dssp CCBCTTSCC-BCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC
T ss_pred cccccccCC-CCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhcccc
Confidence 234444443 67899999999999999999999999999999999999976532 23444444332
Q ss_pred ----------cCCCeEEEec---CCCCcceeecccHHHHHHHHHHhhhcC------CCCCCceEEEecCCCccCHHHHHH
Q 043169 292 ----------QGKPITVYRG---KNHVDLARDFTYIDDIVKGCLGSLDTS------AGPAPYRIFNLGNTSPVTVPKLVN 352 (421)
Q Consensus 292 ----------~~~~~~~~~~---~~~~~~~~~~i~v~Dva~a~~~~l~~~------~~~~~~~~~~i~~~~~~t~~el~~ 352 (421)
.+.++.++.. .++|.+.+||+|++|+|++++.+++.. .....+++|||++++++++.|+++
T Consensus 240 ~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~ 319 (383)
T d1gy8a_ 240 QRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIE 319 (383)
T ss_dssp -----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHH
T ss_pred ccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHHHH
Confidence 3455555532 135788999999999999999988742 113357899999999999999999
Q ss_pred HHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcCCCHHHHHHHH-HHHHHHHh
Q 043169 353 ILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKF-VRWYLSYY 412 (421)
Q Consensus 353 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~-~~~~~~~~ 412 (421)
.+.+.+|.+.++...+ .++++.....+|++|+++.|||+|+++++|+|+++ +.||+++-
T Consensus 320 ~i~~~~~~~~~~~~~~-~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~ 379 (383)
T d1gy8a_ 320 VARKTTGHPIPVRECG-RREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHP 379 (383)
T ss_dssp HHHHHHCCCCCEEEEC-CCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCT
T ss_pred HHHHHhCCCCceEECC-CCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhCc
Confidence 9999999887766555 34667778889999999999999999999999887 68888763
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-42 Score=324.46 Aligned_cols=293 Identities=18% Similarity=0.316 Sum_probs=243.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
.|+||||||+||||++|+++|+++|+.|+++++.. ++|+.|.+.+.++++..++|.|
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~d~v 58 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQV 58 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch-----------------------hccccCHHHHHHHHhhcCCCEE
Confidence 46899999999999999999999999998876521 2599999999999998889999
Q ss_pred EEcccccCch-hhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCC----CCCCChHHH
Q 043169 170 MHLAAQAGVR-YAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRT----DQPASLYAA 244 (421)
Q Consensus 170 i~~Ag~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~----~~~~~~Y~~ 244 (421)
+|+|+..+.. ....++..++++|+.||.+++++|++.+++ +|||+||+++||.....+++|+.+. .++.++|+.
T Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~-~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~ 137 (315)
T d1e6ua_ 59 YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI 137 (315)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH
T ss_pred EEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHH
Confidence 9999876542 334566778899999999999999999976 9999999999998877778776542 223457999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC---------hHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 245 TKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDM---------AYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 245 sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
||+++|.+++.+.+++|++++++||++||||+..... ...........+.++.++ +++...++|+|++
T Consensus 138 sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~~~v~ 214 (315)
T d1e6ua_ 138 AKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVW---GSGTPMREFLHVD 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEE---SCSCCEECEEEHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEc---CCCceEEEEEEee
Confidence 9999999999999999999999999999999765321 122334555567777776 6788999999999
Q ss_pred HHHHHHHHhhhcC------CCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHc
Q 043169 316 DIVKGCLGSLDTS------AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEF 389 (421)
Q Consensus 316 Dva~a~~~~l~~~------~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~l 389 (421)
|++.++..++... ........++++.+.+.++.++++.+.+.+|.+..+...+. ++++......|++|++ +|
T Consensus 215 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~-~~~~~~~~~~d~sk~k-~L 292 (315)
T d1e6ua_ 215 DMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS-KPDGTPRKLLDVTRLH-QL 292 (315)
T ss_dssp HHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-SCCCCSBCCBCCHHHH-HT
T ss_pred hhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCC-CCCCCceeccCHHHHH-Hc
Confidence 9999999988654 12345678999999999999999999999999877665553 3456666678999996 69
Q ss_pred CCCcCCCHHHHHHHHHHHHHHH
Q 043169 390 GYRPTTDLQTGLKKFVRWYLSY 411 (421)
Q Consensus 390 G~~p~~~l~e~l~~~~~~~~~~ 411 (421)
||+|+++++|+|+++++||+++
T Consensus 293 g~~p~~~l~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 293 GWYHEISLEAGLASTYQWFLEN 314 (315)
T ss_dssp TCCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999976
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.1e-41 Score=324.51 Aligned_cols=311 Identities=22% Similarity=0.345 Sum_probs=250.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMH 171 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~ 171 (421)
+||||||+||||++|+++|+++|++|+++++........ .........+++++.+|++|.+++.+++++++||+|||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~---~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih 78 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATD---NLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 78 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHH---HHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchh---HHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEe
Confidence 699999999999999999999999999998644322221 11122235789999999999999999999999999999
Q ss_pred cccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCC---------------CCCCC
Q 043169 172 LAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSE---------------ADRTD 236 (421)
Q Consensus 172 ~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e---------------~~~~~ 236 (421)
+|+.........++...+++|+.||.+|+++|.+.+..++|++.|+..+++.....+..+ +....
T Consensus 79 ~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T d1orra_ 79 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL 158 (338)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred ecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcc
Confidence 999987777777889999999999999999999999875666666666665443322111 11123
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC---CCChHHHHHHHHHc-----CCCeEEEecCCCCcce
Q 043169 237 QPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGR---PDMAYFSFTRNILQ-----GKPITVYRGKNHVDLA 308 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 308 (421)
.+.+.|+.+|...|.++....+.+++...+++++++|++... .......++..++. ++++.++ +++.+.
T Consensus 159 ~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~ 235 (338)
T d1orra_ 159 DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS---GNGKQV 235 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEE---SSSCCE
T ss_pred ccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEe---CCCcee
Confidence 467889999999999999999999999999999999987543 23345566655543 6778877 688999
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecC--CCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHH
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGN--TSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQ 386 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~--~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~ 386 (421)
++|+|++|++++++.+++... ...+++|++.. +..+++.|+++.+.+..+.+.++...+. ++.+......|++|++
T Consensus 236 r~~~~v~D~~~~~~~~l~~~~-~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~d~~k~~ 313 (338)
T d1orra_ 236 RDVLHAEDMISLYFTALANVS-KIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPV-RESDQRVFVADIKKIT 313 (338)
T ss_dssp EECEEHHHHHHHHHHHHHTHH-HHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECC-CSSCCSEECBCCHHHH
T ss_pred EeeecccchhhHHHHHHhccc-cccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCC-CCCCcCeeeECHHHHH
Confidence 999999999999999997642 24578999955 4568999999999999998877666553 3556666778999999
Q ss_pred HHcCCCcCCCHHHHHHHHHHHHHH
Q 043169 387 KEFGYRPTTDLQTGLKKFVRWYLS 410 (421)
Q Consensus 387 ~~lG~~p~~~l~e~l~~~~~~~~~ 410 (421)
+.|||+|+++++|+|+++++||+.
T Consensus 314 ~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 314 NAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp HHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHCCCcCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999985
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=1e-41 Score=327.62 Aligned_cols=319 Identities=22% Similarity=0.248 Sum_probs=254.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|+|||||||||||++|++.|+++|++|++++|+.+....... ......+++++.+|++|++.+.++++...+|+
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~----~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~ 82 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFE----TARVADGMQSEIGDIRDQNKLLESIREFQPEI 82 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHH----HTTTTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHh----hhhcccCCeEEEeeccChHhhhhhhhhchhhh
Confidence 78999999999999999999999999999999998765544321 11234679999999999999999999999999
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
|+|+|+......+..++...+.+|+.|+.++++++++.+....+++.||..++.........+++.+..|.++|+.+|..
T Consensus 83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~~ 162 (356)
T d1rkxa_ 83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGC 162 (356)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHH
T ss_pred hhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCCCcccccccc
Confidence 99999998777777888999999999999999999998876577777777666544443333334444788999999999
Q ss_pred HHHHHHHHHHH---------hCCcEEEEEeccccCCCCCC-CChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHH
Q 043169 249 GEEIAHTYNHI---------YGLSITGLRFFTVYGPWGRP-DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV 318 (421)
Q Consensus 249 ~e~~~~~~~~~---------~gi~~~~vrp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 318 (421)
.|..+..++.+ +++.++++||+++|||++.. ..+++.+++.+..+.++.. +.+.+.++++|++|++
T Consensus 163 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~v~D~~ 238 (356)
T d1rkxa_ 163 AELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVII----RNPHAIRPWQHVLEPL 238 (356)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEEC----SCTTCEECCEETHHHH
T ss_pred chhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCceEE----eecccccccccccccc
Confidence 99999887754 47899999999999998643 4466777777776666543 5778999999999999
Q ss_pred HHHHHhhhcCC--CC--CCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChHHHHHHcCCCcC
Q 043169 319 KGCLGSLDTSA--GP--APYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPT 394 (421)
Q Consensus 319 ~a~~~~l~~~~--~~--~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~lG~~p~ 394 (421)
.++..++.... .. ..+..+....+..+++.++++.+.+.++...........++.+.....+|++|++++|||+|+
T Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P~ 318 (356)
T d1rkxa_ 239 SGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPR 318 (356)
T ss_dssp HHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCC
T ss_pred chhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHHHHCCCcC
Confidence 99998887641 11 123333444456799999999999999988776655555566677778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCC
Q 043169 395 TDLQTGLKKFVRWYLSYYGYN 415 (421)
Q Consensus 395 ~~l~e~l~~~~~~~~~~~~~~ 415 (421)
++++|+|+++++||+++.+.+
T Consensus 319 ~~l~egi~~ti~wyk~~~~~~ 339 (356)
T d1rkxa_ 319 WNLNTTLEYIVGWHKNWLSGT 339 (356)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999987643
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=1.4e-37 Score=288.47 Aligned_cols=275 Identities=20% Similarity=0.184 Sum_probs=237.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+|||||||||||++|+++|.++|++|++++|+. +|++|.+++++++++.++|+||
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~------------------------~D~~d~~~~~~~l~~~~~d~vi 57 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD------------------------LDITNVLAVNKFFNEKKPNVVI 57 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT------------------------CCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh------------------------ccCCCHHHHHHHHHHcCCCEEE
Confidence 6799999999999999999999999999999821 4999999999999999999999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+|+......+...+......|+..+..+.+.+...+. .++++||..+|+.....+..|.+.+ .+...|+.+|...|
T Consensus 58 h~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~~~ss~~v~~~~~~~~~~e~~~~-~~~~~~~~~k~~~e 134 (281)
T d1vl0a_ 58 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQISTDYVFDGEAKEPITEFDEV-NPQSAYGKTKLEGE 134 (281)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCSCCSSCBCTTSCC-CCCSHHHHHHHHHH
T ss_pred eeccccccccccccchhhcccccccccccccccccccc--cccccccceeeeccccccccccccc-cchhhhhhhhhHHH
Confidence 99999887777788888999999999999999988874 8999999999998888888888876 68899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCC
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
.++++ .+.+++++||+++|||+.+ ....++..+..++.+.++ +++.++++|++|+++++..++++..
T Consensus 135 ~~~~~----~~~~~~i~R~~~vyG~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~D~~~~~~~~~~~~~- 201 (281)
T d1vl0a_ 135 NFVKA----LNPKYYIVRTAWLYGDGNN---FVKTMINLGKTHDELKVV-----HDQVGTPTSTVDLARVVLKVIDEKN- 201 (281)
T ss_dssp HHHHH----HCSSEEEEEECSEESSSSC---HHHHHHHHHHHCSEEEEE-----SSCEECCEEHHHHHHHHHHHHHHTC-
T ss_pred HHHHH----hCCCccccceeEEeCCCcc---cccchhhhhccCCceeec-----CCceeccchhhhhhhhhhhhhhhcc-
Confidence 88765 5889999999999999654 567788888888887775 3689999999999999999998762
Q ss_pred CCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCC---C-CCcccCChHHHHHHcCCCcCCCHHHHHHHHHH
Q 043169 331 PAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNG---D-VPFTHANISSAQKEFGYRPTTDLQTGLKKFVR 406 (421)
Q Consensus 331 ~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~---~-~~~~~~d~~ka~~~lG~~p~~~l~e~l~~~~~ 406 (421)
.++||+++++.+|+.|+++.+.+.+|.+.++..++...-. . ..+..+|++|+++.|||+|+ +++|+|+++++
T Consensus 202 ---~g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~-~~~~~l~~~l~ 277 (281)
T d1vl0a_ 202 ---YGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKEYID 277 (281)
T ss_dssp ---CEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHH
T ss_pred ---cCceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCC-CHHHHHHHHHH
Confidence 3699999999999999999999999998776554422111 1 12345899999999999998 99999999999
Q ss_pred HHH
Q 043169 407 WYL 409 (421)
Q Consensus 407 ~~~ 409 (421)
|++
T Consensus 278 ~l~ 280 (281)
T d1vl0a_ 278 LLQ 280 (281)
T ss_dssp HHT
T ss_pred Hhc
Confidence 985
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=9.8e-38 Score=298.27 Aligned_cols=307 Identities=18% Similarity=0.159 Sum_probs=222.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.+||+||||||+||||++|+++|+++|++|++++|+.++.... ..............++.+|+.|.+++.+++.++ |
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~ 85 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL-QKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA--A 85 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC--S
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH-HHhhhccccccccEEEeccccchhhhhhhcccc--h
Confidence 5799999999999999999999999999999999954321111 111112223344566889999999999999887 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCC----CCCCCCC-----------
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNE----NVPFSEA----------- 232 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~----~~~~~e~----------- 232 (421)
+|+|+|+.... ..++...+..|+.||.+++++|.+.+..++||++||+.+++... .....|+
T Consensus 86 ~v~~~a~~~~~---~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 162 (342)
T d1y1pa1 86 GVAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAK 162 (342)
T ss_dssp EEEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHH
T ss_pred hhhhhcccccc---cccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccc
Confidence 99999997542 34556788899999999999999875445999999986543211 1111111
Q ss_pred ----CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCC---CChHHHHHHHHHcCCCeEEEecCC
Q 043169 233 ----DRTDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRP---DMAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 233 ----~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
..+..|.++|+.+|..+|.+++.+.+.+ ++++++++|+.+|||...+ ......++..+.+++.....
T Consensus 163 ~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~---- 238 (342)
T d1y1pa1 163 TLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL---- 238 (342)
T ss_dssp HSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH----
T ss_pred cccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCccc----
Confidence 1222456789999999999999998876 4788999999999986432 34567788888888866543
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCCCCCCCcccCChH
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPGNGDVPFTHANIS 383 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 383 (421)
.+...++|+|++|+|++++.+++++ .. ++.|++++++.+++.|+++.+.+.++...-....+.............+.
T Consensus 239 ~~~~~~~~v~v~Dva~~~i~~l~~~--~~-~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~~~~~~~~~~~~~s~ 315 (342)
T d1y1pa1 239 ALMPPQYYVSAVDIGLLHLGCLVLP--QI-ERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSL 315 (342)
T ss_dssp HTCCSEEEEEHHHHHHHHHHHHHCT--TC-CSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCCCCCCCEECCHHHH
T ss_pred CCccceeeeeHHHHHHHHHHhhcCc--cc-cceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCccCcccccccchHHH
Confidence 3456689999999999999999876 33 44466778889999999999999986532111111111111111112234
Q ss_pred HHHHHcCCCcCCCHHHHHHHHHHH
Q 043169 384 SAQKEFGYRPTTDLQTGLKKFVRW 407 (421)
Q Consensus 384 ka~~~lG~~p~~~l~e~l~~~~~~ 407 (421)
++.+.|||.|.++++|+|+++++.
T Consensus 316 ~~~k~lg~~~~~~lee~i~d~I~s 339 (342)
T d1y1pa1 316 EILKSLGRPGWRSIEESIKDLVGS 339 (342)
T ss_dssp HHHHHTTCCSCCCHHHHHHHHHCC
T ss_pred HHHHHcCCCCCcCHHHHHHHHHHh
Confidence 555779999999999999999864
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-35 Score=272.87 Aligned_cols=293 Identities=20% Similarity=0.343 Sum_probs=203.2
Q ss_pred EEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHH-HHhhc---cCCc
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLA-KLFDA---VAFT 167 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~-~~~~~---~~~d 167 (421)
||||||+||||++|+++|+++|+ +|+++++..... .. .... . ....|..+.+.+. ..... ..++
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~-~~---~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT-KF---VNLV---D----LNIADYMDKEDFLIQIMAGEEFGDVE 70 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGG-GG---HHHH---T----SCCSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcc-hh---hccc---c----cchhhhccchHHHHHHhhhhcccchh
Confidence 89999999999999999999995 788887533211 11 1111 0 1122333333322 22221 1468
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
+|+|.|+..... ..+.+.....|+.++.+++++++..++ ++|+.||..+++........++.. ..+.+.|+.+|.
T Consensus 71 ~i~~~aa~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~i--~~v~~ss~~~~~~~~~~~~~~~~~-~~~~~~Y~~~K~ 145 (307)
T d1eq2a_ 71 AIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREY-EKPLNVYGYSKF 145 (307)
T ss_dssp EEEECCSCCCTT--CCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCSSGGG-CCCSSHHHHHHH
T ss_pred hhhhhccccccc--ccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccc
Confidence 999999865432 345567889999999999999999986 677888877776655544444443 467899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHH
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLG 323 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 323 (421)
++|.+++.+.++++++++++||+++|||+.... .....+.+.+..++...+.. +++...++|+|++|++.++..
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~r~~~~v~d~~~~~~~ 223 (307)
T d1eq2a_ 146 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFE--GSENFKRDFVYVGDVADVNLW 223 (307)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC---------------CBCEEEHHHHHHHHHH
T ss_pred hhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeec--CccceeeeeeecccHHHHHHH
Confidence 999999999998999999999999999976533 34567778888887766543 567889999999999999999
Q ss_pred hhhcCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceecCCC---CCCCCcccCChHHHHHHcCCCcCCCHHHH
Q 043169 324 SLDTSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIEMPG---NGDVPFTHANISSAQKEFGYRPTTDLQTG 400 (421)
Q Consensus 324 ~l~~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~~~~---~~~~~~~~~d~~ka~~~lG~~p~~~l~e~ 400 (421)
+++... .+.||++++++++++|+++++.+..+. ..+...+.+. .........|++|+++.+||+|+++++|+
T Consensus 224 ~~~~~~----~~~~~~~~~~~~si~~i~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~sl~eg 298 (307)
T d1eq2a_ 224 FLENGV----SGIFNLGTGRAESFQAVADATLAYHKK-GQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEG 298 (307)
T ss_dssp HHHHCC----CEEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHHTTCCCCCCCHHHH
T ss_pred Hhhhcc----ccccccccccchhHHHHHHHHHHhcCC-CCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCCCHHHH
Confidence 998762 479999999999999999999887653 2333333321 22234455799999999999999999999
Q ss_pred HHHHHHHH
Q 043169 401 LKKFVRWY 408 (421)
Q Consensus 401 l~~~~~~~ 408 (421)
|+++++|+
T Consensus 299 i~~~i~w~ 306 (307)
T d1eq2a_ 299 VTEYMAWL 306 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99999996
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.6e-34 Score=265.34 Aligned_cols=285 Identities=18% Similarity=0.200 Sum_probs=222.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+||||||+||||++|++.|.++|+.| .++++... +.+|++|.+.+++++++.+||+||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~--------------------~~~Dl~~~~~~~~~i~~~~~D~Vi 59 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKE--------------------FCGDFSNPKGVAETVRKLRPDVIV 59 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSS--------------------SCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCcc--------------------ccCcCCCHHHHHHHHHHcCCCEEE
Confidence 689999999999999999999998754 45543211 247999999999999999999999
Q ss_pred EcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 043169 171 HLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGE 250 (421)
Q Consensus 171 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 250 (421)
|+||...+..+..++...+.+|+.++.+|++++++.+. +++++||+.+|+.....+++|++.+ .|.+.|+.+|..+|
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~~ss~~~~~~~~~~~~~E~~~~-~p~~~y~~~k~~~e 136 (298)
T d1n2sa_ 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYSTDYVFPGTGDIPWQETDAT-SPLNVYGKTKLAGE 136 (298)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEEGGGSCCCTTCCBCTTSCC-CCSSHHHHHHHHHH
T ss_pred EecccccccccccCccccccccccccccchhhhhcccc--ccccccccccccCCCCCCCcccccc-CCCchHhhhhhhhh
Confidence 99999887778888899999999999999999998884 8999999999988888888888776 68899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC-C
Q 043169 251 EIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS-A 329 (421)
Q Consensus 251 ~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~-~ 329 (421)
.+++.. .....+++++..++.... .....+...+..+..+... ++..++++|+.|+++++..+++.. .
T Consensus 137 ~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~i~~~~~ 205 (298)
T d1n2sa_ 137 KALQDN----CPKHLIFRTSWVYAGKGN--NFAKTMLRLAKERQTLSVI-----NDQYGAPTGAELLADCTAHAIRVALN 205 (298)
T ss_dssp HHHHHH----CSSEEEEEECSEECSSSC--CHHHHHHHHHHHCSEEEEE-----CSCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred hhHHhh----hcccccccccceeeccCC--ccchhhhhhhcccceeecc-----cceeecccccchHHHHHHHHHhhhhc
Confidence 887763 445677777776654322 2344556666666666664 356889999999999998877632 1
Q ss_pred CCCCceEEEecCCCccCHHHHHHHHHHHhCCc---cccce-ecCCCC-----CC-CCcccCChHHHHHHcCCCcCCCHHH
Q 043169 330 GPAPYRIFNLGNTSPVTVPKLVNILERHLKVK---AKKNV-IEMPGN-----GD-VPFTHANISSAQKEFGYRPTTDLQT 399 (421)
Q Consensus 330 ~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~---~~~~~-~~~~~~-----~~-~~~~~~d~~ka~~~lG~~p~~~l~e 399 (421)
....+++||+++++.++..|+++.+.+..+.. ..... .+.+.. .. ..+..+|++|+++.|||+|+ +|+|
T Consensus 206 ~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~-~~~~ 284 (298)
T d1n2sa_ 206 KPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QWEL 284 (298)
T ss_dssp CGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BHHH
T ss_pred cccccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCC-cHHH
Confidence 13457999999999999999999888776432 11111 111111 00 12346899999999999998 9999
Q ss_pred HHHHHHHHHHHH
Q 043169 400 GLKKFVRWYLSY 411 (421)
Q Consensus 400 ~l~~~~~~~~~~ 411 (421)
+|+++++++...
T Consensus 285 gl~~~i~~~~~~ 296 (298)
T d1n2sa_ 285 GVKRMLTEMFTT 296 (298)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.95 E-value=7.2e-28 Score=224.25 Aligned_cols=243 Identities=16% Similarity=0.130 Sum_probs=178.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+.|+||||||||+||++++++|+++|++|++++|+...................++.++.+|+.+.+...+.++.. +.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~ 79 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV--DV 79 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC--SE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc--ee
Confidence 3578999999999999999999999999999999877665544444444455678999999999999999999887 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
+||+++.. +..++.+++++++..+.. ++++.||....... .+...+...+..
T Consensus 80 vi~~~~~~---------------~~~~~~~~~~a~~~~~~~-~~~~~s~~~~~~~~------------~~~~~~~~~~~~ 131 (307)
T d1qyca_ 80 VISTVGSL---------------QIESQVNIIKAIKEVGTV-KRFFPSEFGNDVDN------------VHAVEPAKSVFE 131 (307)
T ss_dssp EEECCCGG---------------GSGGGHHHHHHHHHHCCC-SEEECSCCSSCTTS------------CCCCTTHHHHHH
T ss_pred eeeccccc---------------ccchhhHHHHHHHHhccc-cceeeecccccccc------------cccccccccccc
Confidence 99998753 334456788888888865 88888876543211 112222333333
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
.......+..+.+++++++||+++||+.... +..+.....++....++ +++++.++|+|++|+|++++.+++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~i~r~~~v~g~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~~~~~~l~~~ 205 (307)
T d1qyca_ 132 VKAKVRRAIEAEGIPYTYVSSNCFAGYFLRS---LAQAGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIKAVDDP 205 (307)
T ss_dssp HHHHHHHHHHHHTCCBEEEECCEEHHHHTTT---TTCTTCSSCCSSEEEEE---TTSCCEEEEECHHHHHHHHHTTSSCG
T ss_pred ccccccchhhccCCCceecccceecCCCccc---hhhhhhhhhhcccceee---ecccccccCCcHHHHHHHHHHHhcCh
Confidence 3333334444479999999999999975432 11222233455555555 57899999999999999999999876
Q ss_pred CCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceec
Q 043169 329 AGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE 368 (421)
Q Consensus 329 ~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~ 368 (421)
. ...+.+|++++++.+|+.|+++.+.+.+|.+.+...+|
T Consensus 206 ~-~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~ 244 (307)
T d1qyca_ 206 R-TLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244 (307)
T ss_dssp G-GTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred h-hcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECC
Confidence 2 23344567777888999999999999999987665544
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.95 E-value=7.4e-28 Score=219.56 Aligned_cols=233 Identities=12% Similarity=0.053 Sum_probs=172.1
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++||++|||||+++||.++|++|+++|++|++.+|+.+...+...+. ......++.++++|++|+++++++++.+
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~--~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEE--IKKVGGEAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH--HHHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH--HHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999653211111111 1122357889999999999999988765
Q ss_pred ----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|++|||||.... +.+.++++..+++|+.|+.++.+++ ++.+..++||++||.....
T Consensus 81 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~---------- 150 (261)
T d1geea_ 81 KEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI---------- 150 (261)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS----------
T ss_pred HHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc----------
Confidence 79999999998654 2344566789999999988887765 3444444699999987542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.+....|+.||.+.+.+++.++.+ +||+|++|.||.|..|.......-+.....+.+..|. .
T Consensus 151 --~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl------------~ 216 (261)
T d1geea_ 151 --PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPM------------G 216 (261)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTT------------S
T ss_pred --cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCC------------C
Confidence 2234578999999999999999988 4899999999999876321100011223333333321 1
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
-+..++|+|.+++.++........|+++.|.+|..
T Consensus 217 R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s 251 (261)
T d1geea_ 217 YIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCee
Confidence 25678999999999997765678899999988754
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.95 E-value=6.4e-28 Score=219.75 Aligned_cols=231 Identities=16% Similarity=0.131 Sum_probs=173.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
++||++|||||+++||+++++.|+++|++|++.+|+.+..+....+... .....++.++++|++|+++++++++.+
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~-~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLE-TAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-HCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-hCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999966543333332222 223457889999999999999988775
Q ss_pred --CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||+... ..+.++++..+++|+.|+.++.+++. +.+ .++||++||...+-
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~----------- 148 (258)
T d1iy8a_ 81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIR----------- 148 (258)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS-----------
T ss_pred hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccccHhhcc-----------
Confidence 79999999997532 12445677899999999998888762 333 34999999987542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCC------CCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGR------PDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
+.+...+|+.||.+.+.+++.++.+ +||+|++|.||.|..|-.. ...........+.+..|.
T Consensus 149 -~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl-------- 219 (258)
T d1iy8a_ 149 -GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPS-------- 219 (258)
T ss_dssp -BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTT--------
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCC--------
Confidence 2244688999999999999999887 4899999999999875110 000112233333333322
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.-+..++|+|.+++.++........|+++.+.+|..
T Consensus 220 ----~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 220 ----KRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQS 255 (258)
T ss_dssp ----CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred ----CCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcchh
Confidence 125678999999999998766678899999988754
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.95 E-value=1.8e-27 Score=216.66 Aligned_cols=229 Identities=15% Similarity=0.122 Sum_probs=169.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||+++++.|+++|++|++.+|+.+.. +....+ ...++.++.+|++|+++++++++.+
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l----~~~~~~--~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 75 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAA----RATAAE--IGPAACAIALDVTDQASIDRCVAELLD 75 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHH----HHHHHH--HCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHH--hCCceEEEEeeCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999964322 222222 2467899999999999999998775
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||.... ..+.++++..+++|+.|+..+.+++. +.+..++||++||...+-
T Consensus 76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~----------- 144 (256)
T d1k2wa_ 76 RWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR----------- 144 (256)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----------
T ss_pred HhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc-----------
Confidence 79999999998643 22345567899999999988888642 223234999999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC---------ChHHHHHHHHHcCCCeEEEec
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD---------MAYFSFTRNILQGKPITVYRG 301 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 301 (421)
+.+....|+.||.+.+.+++.++.+ +||+|++|.||.+-+|..... .......+.+.+.-|
T Consensus 145 -~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P------ 217 (256)
T d1k2wa_ 145 -GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVP------ 217 (256)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHST------
T ss_pred -ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCC------
Confidence 2245678999999999999999987 489999999999987631100 000011111111111
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
..-+..++|+|.+++.++........|+++.+.+|.-+
T Consensus 218 ------lgR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG~~m 255 (256)
T d1k2wa_ 218 ------FGRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGGNWM 255 (256)
T ss_dssp ------TSSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTTSSC
T ss_pred ------CCCCcCHHHHHHHHHHHhCchhCCccCceEEECcchhh
Confidence 11256789999999999877666788999999887644
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=8.6e-28 Score=217.99 Aligned_cols=231 Identities=16% Similarity=0.127 Sum_probs=172.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||+++|+.|+++|++|++.+|+.+..++...+.... ...++.++++|++|+++++++++.+
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK--YGVETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--HCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH--hCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999665443333332222 2457889999999999999988775
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||.... ..+.++++..+++|+.|+.++.+++. +.+ .++||++||.....
T Consensus 80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i~S~~~~~----------- 147 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGSLTVEE----------- 147 (251)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECCGGGTC-----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-cccccccccchhcc-----------
Confidence 79999999998543 22455667899999999988888764 333 34999999865421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
.+......|+.||.+.+.+++.++.+ +||++++|.||.|-.+.......-+.....+.+..|.. -
T Consensus 148 ~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~------------R 215 (251)
T d1vl8a_ 148 VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLG------------R 215 (251)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTS------------S
T ss_pred ccCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCC------------C
Confidence 12233568999999999999999987 48999999999998764321000022333444433321 1
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+..++|+|++++.++........|+++.+.+|-
T Consensus 216 ~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 216 TGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW 248 (251)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCHHHHHHHHHHHhCchhCCCcCcEEEeCcCe
Confidence 456799999999998776667889999998763
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.6e-28 Score=219.75 Aligned_cols=228 Identities=16% Similarity=0.183 Sum_probs=173.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++|+.|+++|++|++.+|+.+..++..++... ...++.++++|++|+++++++++.+
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~---~g~~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999966543333333222 2357899999999999999888765
Q ss_pred ---CCcEEEEcccccCch---hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR---YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|++|||||..... .+.++++..+++|+.|+.++.+++ ++.+. ++||++||...+.
T Consensus 85 ~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-g~Ii~isS~~~~~------------ 151 (255)
T d1fmca_ 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG-GVILTITSMAAEN------------ 151 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTC------------
T ss_pred HcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccc-cccccccccchhc------------
Confidence 799999999986542 244556789999999988888766 33442 3899999977642
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+.+....|+.||.+.+.+++.++.+ +||+|++|.||.|..+..... .-+.....+.+..|.. -+
T Consensus 152 ~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~-~~~e~~~~~~~~~pl~------------R~ 218 (255)
T d1fmca_ 152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV-ITPEIEQKMLQHTPIR------------RL 218 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-CCHHHHHHHHHTCSSC------------SC
T ss_pred cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhcc-CCHHHHHHHHhcCCCC------------CC
Confidence 2245678999999999999999987 489999999999977521111 1123344444433321 25
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
..++|+|.+++.++........|+++.+.+|.
T Consensus 219 g~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 219 GQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence 67899999999999776667889999998875
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.6e-27 Score=215.04 Aligned_cols=226 Identities=19% Similarity=0.174 Sum_probs=169.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-C
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-A 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~ 165 (421)
+++||++|||||+++||++++++|+++|++|++.+|+.+. ..+... ...++.++.+|++|+++++++++++ +
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----l~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~g~ 74 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD----LVSLAK---ECPGIEPVCVDLGDWDATEKALGGIGP 74 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH---HSTTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHH---hcCCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 4799999999999999999999999999999999995431 111111 2357889999999999999999987 7
Q ss_pred CcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|++|||||..... .+.++++..+++|+.++.++.+++. +.+..++||++||...+. +.+
T Consensus 75 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~ 142 (242)
T d1cyda_ 75 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV------------TFP 142 (242)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCT
T ss_pred CeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc------------cCC
Confidence 89999999986542 2445567889999999988888653 223334999999987642 223
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
....|+.+|.+.+.+++.++.+ +||++++|.||.+..|.......-..+...+.+..|. .-+..+
T Consensus 143 ~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl------------~R~~~p 210 (242)
T d1cyda_ 143 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPL------------RKFAEV 210 (242)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTT------------SSCBCH
T ss_pred ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCCC------------CCCcCH
Confidence 4578999999999999999987 4899999999999875211000001233333332221 125678
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+|+|++++.++........|+++.|.+|-
T Consensus 211 eeva~~v~fL~S~~s~~itG~~i~vDGG~ 239 (242)
T d1cyda_ 211 EDVVNSILFLLSDRSASTSGGGILVDAGY 239 (242)
T ss_dssp HHHHHHHHHHHSGGGTTCCSSEEEESTTG
T ss_pred HHHHHHHHHHhCchhcCcCCceEEeCcch
Confidence 99999999999776667889999998763
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=8.3e-27 Score=210.27 Aligned_cols=223 Identities=17% Similarity=0.157 Sum_probs=169.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++++.|+++|++|++.+|+.+. .++ ....-+.+++.+|++|+++++++++.+
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~----l~~----~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 73 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP----LRE----AAEAVGAHPVVMDVADPASVERGFAEALA 73 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHH----HHHTTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHH----HHHHcCCeEEEEecCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999995421 111 122346789999999999999998776
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhc---CCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSA---NPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~---~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|++|||||+... ..+.++++..+++|+.|+.++.+++.+. ....+++++||....+
T Consensus 74 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~------------ 141 (242)
T d1ulsa_ 74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG------------ 141 (242)
T ss_dssp HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC------------
T ss_pred hcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccC------------
Confidence 79999999998644 2344567789999999998888877432 1123777777765432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
.+...+|+.||.+.+.+++.++.+ +||+|++|.||.|..|-.... .......+....|.. -+
T Consensus 142 -~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~--~~~~~~~~~~~~pl~------------R~ 206 (242)
T d1ulsa_ 142 -NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV--PEKVREKAIAATPLG------------RA 206 (242)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS--CHHHHHHHHHTCTTC------------SC
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcC--CHHHHHHHHhcCCCC------------CC
Confidence 245678999999999999999888 489999999999988743321 123344444443321 25
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 312 TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..++|+|.+++.++........|+++.+.+|..
T Consensus 207 ~~pedia~~v~fL~S~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 207 GKPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (242)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCHHHHHHHHHHHhchhhCCCCCcEEEECCCcc
Confidence 568999999999997765678899999987753
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.95 E-value=1.4e-27 Score=223.42 Aligned_cols=247 Identities=16% Similarity=0.116 Sum_probs=181.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
+.++||||||||+||++|+++|+++|++|++++|+......... .........+++++++|++|.+.+.+++++. +.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~--~~ 78 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKV-QMLLYFKQLGAKLIEASLDDHQRLVDALKQV--DV 78 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHH-HHHHHHHTTTCEEECCCSSCHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHH-HHHhhhccCCcEEEEeecccchhhhhhccCc--ch
Confidence 34679999999999999999999999999999997765554332 2333345678999999999999999999987 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
++++++... ...|..++.++++++++.+.. ++|+.||.+++..... .+..+...|..+|..
T Consensus 79 ~~~~~~~~~-----------~~~~~~~~~~~l~~a~~~~~~-~~v~~Ss~g~~~~~~~-------~~~~~~~~~~~~~~~ 139 (312)
T d1qyda_ 79 VISALAGGV-----------LSHHILEQLKLVEAIKEAGNI-KRFLPSEFGMDPDIME-------HALQPGSITFIDKRK 139 (312)
T ss_dssp EEECCCCSS-----------SSTTTTTHHHHHHHHHHSCCC-SEEECSCCSSCTTSCC-------CCCSSTTHHHHHHHH
T ss_pred hhhhhhhcc-----------cccchhhhhHHHHHHHHhcCC-cEEEEeeccccCCCcc-------cccchhhhhhHHHHH
Confidence 999987532 235666788899999888765 7788888665432211 122345566666666
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
.+.+ ....+++++++||+.+||+....... .+......++.+.++ ++++..++|+|++|+|++++.+++++
T Consensus 140 ~~~~----~~~~~~~~~i~r~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~l~~~ 210 (312)
T d1qyda_ 140 VRRA----IEAASIPYTYVSSNMFAGYFAGSLAQ--LDGHMMPPRDKVLIY---GDGNVKGIWVDEDDVGTYTIKSIDDP 210 (312)
T ss_dssp HHHH----HHHTTCCBCEEECCEEHHHHTTTSSC--TTCCSSCCSSEECCB---TTSCSEEEEECHHHHHHHHHHHTTCG
T ss_pred HHHh----hcccccceEEeccceeecCCccchhh--HHHHhhhcccccccc---cccccccceeeHHHHHHHHHHHhcCc
Confidence 5554 44579999999999999964332110 001112234444444 67889999999999999999999886
Q ss_pred CCCCCce-EEEecCCCccCHHHHHHHHHHHhCCccccceec
Q 043169 329 AGPAPYR-IFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE 368 (421)
Q Consensus 329 ~~~~~~~-~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~ 368 (421)
...++ .|++++++.+|++|+++.+++.+|.+.+...++
T Consensus 211 --~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~ 249 (312)
T d1qyda_ 211 --QTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249 (312)
T ss_dssp --GGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred --cccCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence 23344 566766778999999999999999887655444
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.4e-27 Score=211.37 Aligned_cols=226 Identities=18% Similarity=0.173 Sum_probs=171.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-C
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-A 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~ 165 (421)
.++||++|||||+++||+++++.|+++|++|++.+|+.+. .++... ...++.++.+|++|.++++++++++ +
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~----l~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~g~ 76 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD----LDSLVR---ECPGIEPVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH---HSTTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH----HHHHHH---hcCCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 4799999999999999999999999999999999995432 122211 2256889999999999999999887 7
Q ss_pred CcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|++|||||.... ..+.++++..+++|+.++.++.+++.+ .+..++||++||..... ..+
T Consensus 77 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------~~~ 144 (244)
T d1pr9a_ 77 VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------AVT 144 (244)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCT
T ss_pred ceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc------------ccc
Confidence 8999999998654 224456678999999998888776532 22334999999987642 223
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
....|+.||.+.+.+++.++.+ +||++++|.||.|..|-......-....+.+.+..|. .-+..+
T Consensus 145 ~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl------------~R~~~p 212 (244)
T d1pr9a_ 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPL------------GKFAEV 212 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTT------------CSCBCH
T ss_pred chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCC------------CCCcCH
Confidence 4578999999999999999987 4899999999999876321111112233444443332 126678
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+|+|++++.++........|+++.+.+|-
T Consensus 213 eevA~~v~fL~S~~a~~itG~~i~vDGG~ 241 (244)
T d1pr9a_ 213 EHVVNAILFLLSDRSGMTTGSTLPVEGGF 241 (244)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHHHHhCchhCCcCCcEEEECccH
Confidence 99999999999876667889999998763
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.95 E-value=6.6e-27 Score=211.69 Aligned_cols=227 Identities=11% Similarity=0.062 Sum_probs=164.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||+++++.|+++|++|++.+|++. +..... ......++.++.+|++|+++++++++.+
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~---~~~~~~--~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~ 76 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA---PEAEAA--IRNLGRRVLTVKCDVSQPGDVEAFGKQVIS 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC---HHHHHH--HHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch---HHHHHH--HHHcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999653 111111 1123467899999999999999988765
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||+... +.+.++++..+++|+.|+.++.+++ ++.+ .++||++||.....
T Consensus 77 ~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~----------- 144 (247)
T d2ew8a1 77 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYWL----------- 144 (247)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGS-----------
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccccchhcc-----------
Confidence 79999999998643 2344567789999999988888876 3444 24999999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.+....|+.||.+.+.+++.++.+ +||++++|.||.|..|...... .......... ......-
T Consensus 145 -~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~-~~~~~~~~~~-----------~~~~l~r 211 (247)
T d2ew8a1 145 -KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASA-LSAMFDVLPN-----------MLQAIPR 211 (247)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-------------------C-----------TTSSSCS
T ss_pred -cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccc-cchhHHHHHH-----------HhccCCC
Confidence 2244578999999999999999987 4899999999999876322110 0000000000 0011112
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+..++|+|++++.++........|+++.+.+|-
T Consensus 212 ~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 244 (247)
T d2ew8a1 212 LQVPLDLTGAAAFLASDDASFITGQTLAVDGGM 244 (247)
T ss_dssp CCCTHHHHHHHHHHTSGGGTTCCSCEEEESSSC
T ss_pred CCCHHHHHHHHHHHhCchhcCCcCCeEEECCCE
Confidence 567899999999999876567889999998763
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.95 E-value=1.8e-27 Score=216.00 Aligned_cols=226 Identities=12% Similarity=0.097 Sum_probs=171.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++++|++|||||+++||.++++.|+++|++|++.+|+.+..++..++.. ....++.++.+|++|+++++++++.+
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~---~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK---SFGYESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHH---TTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999996543333222221 12357899999999999999988875
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||..... ...++++..+++|+.++..+.+++ ++.+ .++||++||...+.
T Consensus 84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~~~----------- 151 (251)
T d2c07a1 84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVGLT----------- 151 (251)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHH-----------
T ss_pred hcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEECCHHhcC-----------
Confidence 799999999986442 234566789999999988888876 3444 24999999977541
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.+...+|+.||.+.+.+++.++.+ +||++++|.||.|..+..... .....+.+....|.. -
T Consensus 152 -~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~--~~~~~~~~~~~~pl~------------R 216 (251)
T d2c07a1 152 -GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI--SEQIKKNIISNIPAG------------R 216 (251)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C--CHHHHHHHHTTCTTS------------S
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccccc--CHHHHHHHHhcCCCC------------C
Confidence 2244678999999999999999987 489999999999988743221 234445555544321 2
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
+..++|+|++++.++........|+++.+.+|
T Consensus 217 ~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 248 (251)
T d2c07a1 217 MGTPEEVANLACFLSSDKSGYINGRVFVIDGG 248 (251)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 56789999999999977666788999999876
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=8.2e-27 Score=210.20 Aligned_cols=219 Identities=16% Similarity=0.099 Sum_probs=167.6
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||+++||||+++||+++++.|+++|++|++.+|+.++. +....+ ...++.++++|++|+++++++++.+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~----~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEG----KAMAAE--LADAARYVHLDVTQPAQWKAAVDTAVT 76 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHH--TGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHH--hhCcceEEEeecCCHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999965322 222222 2356889999999999999988775
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||.... +.+.++++..+++|+.|+.++.+.+ ++.+ .++||++||...+.
T Consensus 77 ~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~----------- 144 (244)
T d1nffa_ 77 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSIEGLA----------- 144 (244)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS-----------
T ss_pred HhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcC-cceEEecccccccc-----------
Confidence 79999999998644 2234556789999999988888866 3333 24999999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.+....|+.+|.+.+.+++.++.+ +||+++.|.||.|..|-... + .... ......-
T Consensus 145 -~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~----------~-~~~~--------~~~pl~R 204 (244)
T d1nffa_ 145 -GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW----------V-PEDI--------FQTALGR 204 (244)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT----------S-CTTC--------SCCSSSS
T ss_pred -ccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhh----------h-hHHH--------HhccccC
Confidence 2234678999999999999999988 48999999999998763211 0 0000 0011223
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+..++|+|++++.++........|+++.+.+|-
T Consensus 205 ~~~p~diA~~v~fL~s~~s~~itG~~i~vDGG~ 237 (244)
T d1nffa_ 205 AAEPVEVSNLVVYLASDESSYSTGAEFVVDGGT 237 (244)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCHHHHHHHHHHHhChhhCCCcCCEEEECCCe
Confidence 678999999999999766567889999998765
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=5e-27 Score=212.39 Aligned_cols=224 Identities=15% Similarity=0.080 Sum_probs=166.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
++||++|||||+++||+++++.|+++|++|++.+|+.+. .+... ..+..++++|++|.++++++++.+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~-----~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-----KEVAE----AIGGAFFQVDLEDERERVRFVEEAAYA 73 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-----HHHHH----HHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-----HHHHH----HcCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999996541 11111 124578899999999999988775
Q ss_pred --CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|++|||||.... +.+.++++..+++|+.|+.++.+++. +.+ .++||++||...+.
T Consensus 74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS~~~~~------------ 140 (248)
T d2d1ya1 74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGLF------------ 140 (248)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTS------------
T ss_pred cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc-cccccccccccccc------------
Confidence 79999999998644 22445567899999999988888873 333 34999999987642
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC----CChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP----DMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+...+|+.+|.+.+.+++.++.+ +||+|++|.||.|-.|.... ........+.+.+..+
T Consensus 141 ~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p------------ 208 (248)
T d2d1ya1 141 AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHA------------ 208 (248)
T ss_dssp BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTST------------
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCC------------
Confidence 2245678999999999999999988 48999999999997651100 0000011111111111
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
..-+..++|+|.+++.++........|+++.+.+|-..
T Consensus 209 l~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~ta 246 (248)
T d2d1ya1 209 LRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGMTA 246 (248)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCcCccc
Confidence 12256789999999999976656788999999877543
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=3.9e-27 Score=211.62 Aligned_cols=216 Identities=15% Similarity=0.089 Sum_probs=164.7
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++||++|||||+++||.++++.|+++|++|++.+|+++.. .++..+++|++|+++++++++.+
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--------------~~~~~~~~Dv~~~~~v~~~~~~~~ 68 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP--------------KGLFGVEVDVTDSDAVDRAFTAVE 68 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC--------------TTSEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh--------------cCceEEEEecCCHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999976532 45678999999999999988775
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|++|||||..... .+.++++..+++|+.++..+.+.+ ++.+. ++||++||.....
T Consensus 69 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-g~Iv~isS~~~~~---------- 137 (237)
T d1uzma1 69 EHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKF-GRMIFIGSVSGLW---------- 137 (237)
T ss_dssp HHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCCCC------------
T ss_pred HhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCC-CceEEEcchhhcc----------
Confidence 799999999986442 244566789999999988777765 44443 3999999977542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
.......|+.||.+.+.+++.++.+ +||+|++|.||.|..+-.... .......+.+..|. .
T Consensus 138 --~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~--~~~~~~~~~~~~pl------------~ 201 (237)
T d1uzma1 138 --GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL--DERIQQGALQFIPA------------K 201 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS--CHHHHHHHGGGCTT------------C
T ss_pred --CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhcc--CHHHHHHHHhcCCC------------C
Confidence 2234678999999999999999987 489999999999987521100 01222222222221 1
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
-+..++|+|.+++.++........|+++.+.+|
T Consensus 202 R~~~pedvA~~v~fL~S~~s~~itG~~i~vdGG 234 (237)
T d1uzma1 202 RVGTPAEVAGVVSFLASEDASYISGAVIPVDGG 234 (237)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 256789999999999977656788999999876
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.95 E-value=5e-27 Score=214.02 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=171.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++++.|+++|++|++.+|+.+..++..++.. ....++.++.+|++|+++++++++.+
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~---~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR---SKGFKVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999996554433333222 22467889999999999988887653
Q ss_pred ----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|++|||||.... ..+.++++..+++|+.|+.++.+++. +.+ .++||++||.....
T Consensus 82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~---------- 150 (259)
T d2ae2a_ 82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE-RGNVVFISSVSGAL---------- 150 (259)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS-SEEEEEECCGGGTS----------
T ss_pred HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhc-cccccccccccccc----------
Confidence 58999999998643 23445667899999999888888763 333 34999999977542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC---CCCChHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWG---RPDMAYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
+.+....|+.||.+.+.+++.++.+ +||+|++|.||.|..|.. ..+.........+....|..
T Consensus 151 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~--------- 219 (259)
T d2ae2a_ 151 --AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALR--------- 219 (259)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTC---------
T ss_pred --ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCC---------
Confidence 2245678999999999999999987 489999999999977521 11111122333444433321
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
-+..++|+|.+++.++........|+++.+.+|-
T Consensus 220 ---R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 253 (259)
T d2ae2a_ 220 ---RMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGL 253 (259)
T ss_dssp ---SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ---CCcCHHHHHHHHHHHhCchhCCCcCcEEEECCCe
Confidence 2566899999999999876667889999998764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.95 E-value=4e-27 Score=214.87 Aligned_cols=228 Identities=16% Similarity=0.151 Sum_probs=170.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++++.|+++|++|++++|+.+..+...+... ....++.++.+|++|+++++++++.+
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~---~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR---EKGVEARSYVCDVTSEEAVIGTVDSVVR 78 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---TTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999996543333222221 12357889999999999999988775
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|++|||||.... +.+.++++..+++|+.++.++.+++. +.+ .++||++||...+.
T Consensus 79 ~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~~~---------- 147 (260)
T d1zema1 79 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTASMAGVK---------- 147 (260)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHS----------
T ss_pred HhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhc-CCCCCeeechhhcc----------
Confidence 79999999997532 22445567899999999888888763 333 34999999987542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC--------------CCCChHHHHHHHHHcCCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWG--------------RPDMAYFSFTRNILQGKP 295 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~--------------~~~~~~~~~~~~~~~~~~ 295 (421)
+.+...+|+.||.+.+.+++.++.+ +||++++|.||.|-.+.. ........+.+.+...-|
T Consensus 148 --~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 225 (260)
T d1zema1 148 --GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVP 225 (260)
T ss_dssp --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTST
T ss_pred --CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCC
Confidence 2234578999999999999999988 489999999999987521 011112233333333333
Q ss_pred eEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 296 ITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.. -+..++|+|.+++.++........|+++.+.+|
T Consensus 226 l~------------R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 260 (260)
T d1zema1 226 MR------------RYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 260 (260)
T ss_dssp TS------------SCBCGGGSHHHHHHHHSGGGTTCCSCEEEESCC
T ss_pred CC------------CCcCHHHHHHHHHHHhCchhcCccCCeEEeCCC
Confidence 21 145679999999999987666788999988764
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.95 E-value=3.7e-27 Score=214.75 Aligned_cols=229 Identities=15% Similarity=0.100 Sum_probs=157.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++|+.|+++|++|++++|+.+..++..++.. ....++.++.+|++|+++++++++.+
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ---KKGFQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCceEEEeccCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999997654433333222 23457899999999999988877653
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|++|||||..... .+.++++..+++|+.|+.++.+++. +.+ .++||++||.....
T Consensus 82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~---------- 150 (259)
T d1xq1a_ 82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVV---------- 150 (259)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC----------------
T ss_pred HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccccccccc----------
Confidence 589999999986542 2445567899999999888888763 334 24999999977531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
..+....|+.||.+.+.+++.++.+ +||+|++|.||.|..|-.... ......+.+.+..| ..
T Consensus 151 --~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~-~~~~~~~~~~~~~p------------l~ 215 (259)
T d1xq1a_ 151 --SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV-YDDEFKKVVISRKP------------LG 215 (259)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------------
T ss_pred --cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhh-chHHHHHHHHhCCC------------CC
Confidence 2234678999999999999999988 489999999999987632210 00111111111111 11
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
-+..++|+|.+++.++........|+++.+.+|-.
T Consensus 216 R~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG~s 250 (259)
T d1xq1a_ 216 RFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLT 250 (259)
T ss_dssp --CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCEE
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcCcEEEeCCCEE
Confidence 25568999999999997665678899999987743
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=9.4e-27 Score=210.04 Aligned_cols=224 Identities=14% Similarity=0.085 Sum_probs=169.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||+++||||+++||+++++.|+++|++|++.+|+.+.. +....+ ...++.++.+|++|+++++++++.+
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l----~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGA----QAISDY--LGANGKGLMLNVTDPASIESVLEKIRA 74 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHH----HHHHHH--HGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHHH--hCCCCcEEEEEecCHHHhhhhhhhhhc
Confidence 36899999999999999999999999999999999964322 222221 1356788999999999999888775
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||..... ...++++..+++|+.++..+.+++ ++.+ .++||++||...+.
T Consensus 75 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~~~----------- 142 (243)
T d1q7ba_ 75 EFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIGSVVGTM----------- 142 (243)
T ss_dssp HTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH-----------
T ss_pred ccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeecchhhcC-----------
Confidence 799999999986542 234556788999999988888877 3333 24999999976541
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.+...+|+.||.+.+.+++.++.+ +||++++|.||.|-.+-... ........+.+..|. .-
T Consensus 143 -~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl------------~R 207 (243)
T d1q7ba_ 143 -GNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRA--LSDDQRAGILAQVPA------------GR 207 (243)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--SCHHHHHHHHTTCTT------------SS
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhh--hhhhHHHHHHhcCCC------------CC
Confidence 2244678999999999999999987 58999999999997652111 111222333333321 12
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+..++|+|.+++.++........|+++.+.+|-
T Consensus 208 ~~~pedvA~~v~fL~S~~s~~itGq~i~vdGG~ 240 (243)
T d1q7ba_ 208 LGGAQEIANAVAFLASDEAAYITGETLHVNGGM 240 (243)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCHHHHHHHHHHHhCchhcCCcCCeEEECCCe
Confidence 567899999999999876567889999998764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.94 E-value=4.5e-26 Score=206.58 Aligned_cols=225 Identities=14% Similarity=0.055 Sum_probs=166.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.+++++|+++|++|++.+|+.+. ......+ ...++.++++|++|+++++++++.+
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~----~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE----GAATARE--LGDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHT--TGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHH--hCCceEEEEcccCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999996532 1111111 2357899999999999999988775
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||..... ...++++..+++|+.|+.++.+++. +.+ .++||++||...+.
T Consensus 76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS~~~~~----------- 143 (254)
T d1hdca_ 76 EFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSAAGLM----------- 143 (254)
T ss_dssp HHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS-----------
T ss_pred HcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeecccccchhcc-----------
Confidence 799999999986542 2344566899999999888888763 334 34999999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
+.+....|+.||.+.+.+++.++.+ +||+|++|.||.|..| +............. ......-
T Consensus 144 -~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~----------~~~~~~~~~~~~~~----~~~pl~R 208 (254)
T d1hdca_ 144 -GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP----------MTAETGIRQGEGNY----PNTPMGR 208 (254)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH----------HHHHHTCCCSTTSC----TTSTTSS
T ss_pred -cccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc----------cchhcCHHHHHHHH----hCCCCCC
Confidence 2245678999999999999999987 4899999999999765 11111111100000 0000111
Q ss_pred c-ccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 311 F-TYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 311 ~-i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+ +.++|+|.+++.++........|+++.+.+|-.
T Consensus 209 ~g~~PedvA~~v~fL~S~~a~~itG~~i~vDGG~t 243 (254)
T d1hdca_ 209 VGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGWT 243 (254)
T ss_dssp CB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCCCHHHHHHHHHHHhchhhCCCCCceEEeCCCcc
Confidence 2 358999999999997765678899999988753
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.94 E-value=6.2e-27 Score=213.39 Aligned_cols=226 Identities=17% Similarity=0.111 Sum_probs=171.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
+||++|||||+++||.++|+.|+++|++|++.+|+.+..++..++.. ....++.++++|++|+++++++++.+
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~---~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR---EAGVEADGRTCDVRSVPEIEALVAAVVERY 77 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999997654433333322 12457899999999999999888765
Q ss_pred -CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh------cCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS------ANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~------~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||.... +.+.++++..+++|+.|+.++.+++.+ .+ .++||++||...+.
T Consensus 78 g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~-~g~Ii~i~S~~~~~----------- 145 (257)
T d2rhca1 78 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG-TGRIVNIASTGGKQ----------- 145 (257)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHT-EEEEEEECCGGGTS-----------
T ss_pred CCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcC-Cccccccccccccc-----------
Confidence 79999999998643 224455678999999999999998743 23 23899999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCC---------CCChHHHHHHHHHcCCCeEEEec
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGR---------PDMAYFSFTRNILQGKPITVYRG 301 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 301 (421)
+.+....|+.||.+.+.+++.++.+ +||+|++|.||.|-.|-.. ...........+.+..|.
T Consensus 146 -~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Pl----- 219 (257)
T d2rhca1 146 -GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPI----- 219 (257)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTT-----
T ss_pred -ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCC-----
Confidence 2245678999999999999999988 4799999999999765110 011122334444443332
Q ss_pred CCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 302 KNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 302 ~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.-+..++|+|.+++.++........|+++.+.+|
T Consensus 220 -------gR~~~pedia~~v~fL~S~~s~~itG~~i~vDGG 253 (257)
T d2rhca1 220 -------GRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 253 (257)
T ss_dssp -------SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred -------CCCcCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence 1256789999999999976656788999999876
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.94 E-value=6.7e-27 Score=213.53 Aligned_cols=234 Identities=12% Similarity=0.060 Sum_probs=165.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC-CChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY-YDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++||++|||||+++||.++|++|+++|++|++.+|++.. .++...... .....++.++.+|++|+++++++++.+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLA--AQHGVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH--HHHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHH--HhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999996431 111111111 122457899999999999999998775
Q ss_pred ---CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||..... .+.++++..+++|+.|+.++.+++ ++.+. ++||++||...+.
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Iv~isS~~~~~----------- 147 (260)
T d1x1ta1 80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGF-GRIINIASAHGLV----------- 147 (260)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS-----------
T ss_pred HhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCC-ceEeeccccccee-----------
Confidence 799999999986442 244556789999999988877776 44442 4999999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecC----CCCc
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGK----NHVD 306 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 306 (421)
+.+...+|+.||.+.+.+++.++.+ +||+|++|.||.|-.|-... .+............... ....
T Consensus 148 -~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T d1x1ta1 148 -ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK------QISALAEKNGVDQETAARELLSEKQ 220 (260)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------------CHHHHC
T ss_pred -ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhh------hhhhhhhhcCCChHHHHHHHHHhcC
Confidence 2244678999999999999999987 48999999999998763211 11111100000000000 0000
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
...-+..++|+|++++.++........|+++.+.+|
T Consensus 221 Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG 256 (260)
T d1x1ta1 221 PSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp TTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcc
Confidence 112367799999999999987666788999999876
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.94 E-value=8.2e-27 Score=211.57 Aligned_cols=226 Identities=16% Similarity=0.086 Sum_probs=167.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
++||++|||||+++||.++++.|+++|++|++.+|+.+.. +..........++.++.+|++|+++++++++.+
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVG----EKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999965322 222223334567999999999999999988775
Q ss_pred --CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|++|||||..... .+.++++..+++|+.|+.++.+++. +.+..++||++||...+-
T Consensus 80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~------------ 147 (251)
T d1zk4a1 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV------------ 147 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS------------
T ss_pred hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec------------
Confidence 799999999986432 2345566899999999988888764 333223899999987541
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+.+....|+.||.+.+.+++.++.+ +||+|++|.||.|.+|...... -........... ...
T Consensus 148 ~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~-~~~~~~~~~~~~------------pl~ 214 (251)
T d1zk4a1 148 GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP-GAEEAMSQRTKT------------PMG 214 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTST-THHHHHTSTTTC------------TTS
T ss_pred cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcC-CHHHHHHHHhCC------------CCC
Confidence 2234578999999999999988755 4799999999999775211100 001111111111 111
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
-+..++|+|.+++.++........|+++.+.+|
T Consensus 215 R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 247 (251)
T d1zk4a1 215 HIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCchhCCCcCcEEEECcc
Confidence 267899999999999877666788999999876
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=6.4e-26 Score=199.76 Aligned_cols=202 Identities=14% Similarity=0.016 Sum_probs=158.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.+|+|+||||||+||++++++|+++|++|++++|+.++... ....+++++.+|++|.+++.++++++ |+
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~---------~~~~~~~~~~gD~~d~~~l~~al~~~--d~ 70 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQ--DA 70 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccc---------ccccccccccccccchhhHHHHhcCC--CE
Confidence 57899999999999999999999999999999997654322 23467999999999999999999988 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKA 248 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~ 248 (421)
|||++|... .....+++..++.++++++++++++ |||++||..+++.... .......|...|..
T Consensus 71 vi~~~g~~~-------~~~~~~~~~~~~~~l~~aa~~~~v~-r~i~~ss~~~~~~~~~--------~~~~~~~~~~~~~~ 134 (205)
T d1hdoa_ 71 VIVLLGTRN-------DLSPTTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTK--------VPPRLQAVTDDHIR 134 (205)
T ss_dssp EEECCCCTT-------CCSCCCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTC--------SCGGGHHHHHHHHH
T ss_pred EEEEeccCC-------chhhhhhhHHHHHHHHHHHHhcCCC-eEEEEeeeeccCCCcc--------ccccccccchHHHH
Confidence 999998632 1233467889999999999999976 9999999988754321 11233568888988
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcC
Q 043169 249 GEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 249 ~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
+|.++++ .|+++++|||+.+++.... +. ..+. .++.....+++++|+|++++.+++++
T Consensus 135 ~e~~l~~----~~~~~tiirp~~~~~~~~~--------------~~-~~~~---~~~~~~~~~i~~~DvA~~~~~~l~~~ 192 (205)
T d1hdoa_ 135 MHKVLRE----SGLKYVAVMPPHIGDQPLT--------------GA-YTVT---LDGRGPSRVISKHDLGHFMLRCLTTD 192 (205)
T ss_dssp HHHHHHH----TCSEEEEECCSEEECCCCC--------------SC-CEEE---SSSCSSCSEEEHHHHHHHHHHTTSCS
T ss_pred HHHHHHh----cCCceEEEecceecCCCCc--------------cc-EEEe---eCCCCCCCcCCHHHHHHHHHHHhCCC
Confidence 8877654 6999999999999864222 11 2222 24566778999999999999999987
Q ss_pred CCCCCceEEEecC
Q 043169 329 AGPAPYRIFNLGN 341 (421)
Q Consensus 329 ~~~~~~~~~~i~~ 341 (421)
...|+.+.++.
T Consensus 193 --~~~g~~~~~s~ 203 (205)
T d1hdoa_ 193 --EYDGHSTYPSH 203 (205)
T ss_dssp --TTTTCEEEEEC
T ss_pred --CCCCEEEecCC
Confidence 34577777654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.2e-26 Score=205.79 Aligned_cols=224 Identities=17% Similarity=0.122 Sum_probs=167.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++++.|+++|++|++.+|+.+ ..+.... ...++.++.+|++|+++++++++.+
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES----GGRALEQ---ELPGAVFILCDVTQEDDVKTLVSETIR 75 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHH---HCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHH---hcCCCeEEEccCCCHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999998542 1222221 2256889999999999999988775
Q ss_pred ---CCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|++|||||.... ..+.++++..+++|+.|+.++.+++ ++.+ ++||++||.....
T Consensus 76 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--G~Ii~isS~~~~~---------- 143 (250)
T d1ydea1 76 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ--GNVINISSLVGAI---------- 143 (250)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCHHHHH----------
T ss_pred hcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC--CCCcccccccccc----------
Confidence 79999999997532 1234456789999999988888876 3333 4999999987541
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCC----CCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGR----PDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.+...+|+.+|.+.+.+++.++.+ +||+|++|.||.|..|-.. ........++......|.
T Consensus 144 --~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl--------- 212 (250)
T d1ydea1 144 --GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPL--------- 212 (250)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTT---------
T ss_pred --cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCC---------
Confidence 2244678999999999999999987 4899999999999765110 000111223333333321
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.-+..++|+|++++.++.. .....|+++.+.+|-.
T Consensus 213 ---~R~g~p~eva~~v~fL~Sd-a~~itG~~i~vDGG~~ 247 (250)
T d1ydea1 213 ---GRMGQPAEVGAAAVFLASE-ANFCTGIELLVTGGAE 247 (250)
T ss_dssp ---SSCBCHHHHHHHHHHHHHH-CTTCCSCEEEESTTTT
T ss_pred ---CCCCCHHHHHHHHHHHhCc-cCCCcCCeEEECCCcc
Confidence 1256789999999998864 4578899999988754
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.94 E-value=2.4e-26 Score=209.19 Aligned_cols=226 Identities=15% Similarity=0.098 Sum_probs=166.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
|.+|||||+++||.+++++|+++|++|++.+|+.+..++..++.. ....++.++++|++|+++++++++.+ +
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~---~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN---QAGGHAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 567999999999999999999999999999997644333332222 12357889999999999999988775 7
Q ss_pred CcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|++|||||.... ..+.++++..+++|+.|+.++++++ ++.+..++||++||...+. +.+
T Consensus 79 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~~ 146 (255)
T d1gega_ 79 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------GNP 146 (255)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------CCT
T ss_pred ccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc------------cCc
Confidence 9999999998643 2244556789999999998888875 3444344899999977542 224
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC---------CChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP---------DMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
....|+.||.+.+.+++.++.+ +||++++|.||.|-.|-... ..........+.+..|.
T Consensus 147 ~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl--------- 217 (255)
T d1gega_ 147 ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITL--------- 217 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTT---------
T ss_pred ccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCC---------
Confidence 5678999999999999999977 48999999999997651100 00000112222222221
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|.+++.++....+...|+++.+.+|-
T Consensus 218 ---~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG~ 252 (255)
T d1gega_ 218 ---GRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM 252 (255)
T ss_dssp ---CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred ---CCCcCHHHHHHHHHHHhCchhCCccCcEEEecCCE
Confidence 12567899999999999776667889999998774
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=1.7e-26 Score=211.29 Aligned_cols=231 Identities=13% Similarity=0.111 Sum_probs=163.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||++++++|+++|++|++.+|+.+..++..++.........++.++.+|++|.++++++++.+
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999765444444433333233457999999999999999988775
Q ss_pred ---CCcEEEEcccccCch--------hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEcccc-ccCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR--------YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSS-VYGLNENVP 228 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~--------~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~-v~g~~~~~~ 228 (421)
++|++|||||..... .+.++++..+++|+.|+.++.+++. +.+ .++|+++|.. .+.
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~--g~iI~~~S~~~~~~------ 153 (264)
T d1spxa_ 82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLH------ 153 (264)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTTSSSS------
T ss_pred HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc--Ccceeeeeeccccc------
Confidence 799999999985321 1334567789999999888888763 333 2666666643 221
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-------ChHHHHHHHHHcCCCeEE
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD-------MAYFSFTRNILQGKPITV 298 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~ 298 (421)
+.+....|+.||.+.+.+++.++.+ +||+|++|.||.|-.+..... .........+.+.-|.
T Consensus 154 ------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl-- 225 (264)
T d1spxa_ 154 ------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPA-- 225 (264)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTT--
T ss_pred ------cCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCC--
Confidence 2234567999999999999999987 489999999999987632210 0011122222222211
Q ss_pred EecCCCCcceeecccHHHHHHHHHHhhhcC-CCCCCceEEEecCCC
Q 043169 299 YRGKNHVDLARDFTYIDDIVKGCLGSLDTS-AGPAPYRIFNLGNTS 343 (421)
Q Consensus 299 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|++++.++..+ .....|+++.|.+|.
T Consensus 226 ----------~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~ 261 (264)
T d1spxa_ 226 ----------GVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGS 261 (264)
T ss_dssp ----------SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred ----------CCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCCh
Confidence 12566899999999998643 346789999998764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.94 E-value=1.3e-25 Score=205.85 Aligned_cols=231 Identities=15% Similarity=0.146 Sum_probs=169.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++|+.|+++|++|++++|+.+.. ++...+......+.++.+|++|+++++++++.+
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~----~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHG----QKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIA 78 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999965322 222333334456889999999999999988765
Q ss_pred ---CCcEEEEcccccCch------hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVR------YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||..... .+.++++..+++|+.|+.++.+++. +.+ .+++|++||...+.
T Consensus 79 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss~~~~~--------- 148 (268)
T d2bgka1 79 KHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFT--------- 148 (268)
T ss_dssp HHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTC---------
T ss_pred HcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCccccccccccc---------
Confidence 799999999975431 1234566789999999888888763 333 34999999976542
Q ss_pred CCCCCCC-CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-hHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 232 ADRTDQP-ASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM-AYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 232 ~~~~~~~-~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
...+ ...|+.||.+.+.+++.++.+ +||+|++|.||.|.+|-..... .-.............
T Consensus 149 ---~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~---------- 215 (268)
T d2bgka1 149 ---AGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAAN---------- 215 (268)
T ss_dssp ---CCTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCS----------
T ss_pred ---cccccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccc----------
Confidence 1122 347999999999999999887 4899999999999887432111 001111111111100
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
...-+..++|+|.+++.++........|+++.|.+|-.
T Consensus 216 ~~gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG~t 253 (268)
T d2bgka1 216 LKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYT 253 (268)
T ss_dssp SCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cCCCCcCHHHHHHHHHHHhChhhCCccCceEEECcCcc
Confidence 01125678999999999998766678899999988754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.94 E-value=1.2e-26 Score=210.56 Aligned_cols=226 Identities=16% Similarity=0.113 Sum_probs=164.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.++++.|+++|++|++.+|+.+. .++...+ ...+..++++|++|.++++++++.+
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~----~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 76 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAA----GQQLAAE--LGERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHH----HHHHHHH--HCTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHH--hCCCeEEEEeecCCHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999985432 2222222 2456889999999999999988776
Q ss_pred ---CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhcC--CCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSAN--PQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|++|||||.... ..+.++++..+++|+.|+.++.+++.+.- ..++||++||...+- +
T Consensus 77 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~------------~ 144 (253)
T d1hxha_ 77 RLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL------------P 144 (253)
T ss_dssp HHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS------------C
T ss_pred HhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc------------C
Confidence 79999999998643 22345567899999999888888764321 124999999987642 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCC---CCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGR---PDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
.+...+|+.||.+.+.+++.++.+ ++|++++|.||.|..|-.. +.... +....... ....
T Consensus 145 ~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~----~~~~~~~~--------~~~~ 212 (253)
T d1hxha_ 145 IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVS----KEMVLHDP--------KLNR 212 (253)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCC----HHHHBCBT--------TTBT
T ss_pred ccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhh----HHHHHhCc--------cccc
Confidence 244578999999999999888765 3599999999999765100 00000 01111110 0011
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.--+..++|+|++++.++........|+++++.+|
T Consensus 213 ~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 213 AGRAYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp TCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred cCCCCCHHHHHHHHHHHhChhhCCCcCcEEEECcc
Confidence 12366789999999999987666788999999775
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.94 E-value=6.6e-26 Score=206.29 Aligned_cols=229 Identities=14% Similarity=0.065 Sum_probs=169.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||+||||||+++||++++++|+++|++|++.+|+.+..++..+.. ......+.++.+|++|.++++++++.+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~---~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW---REKGLNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---HHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---HhcCCCceEEEeecCCHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999764433333222 223467888999999999998877653
Q ss_pred ----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
.+|+||||||.... +...+++...+++|+.++..+.+++. +.+ .++||++||.....
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~isS~~~~~---------- 148 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIAGFS---------- 148 (258)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGGGTS----------
T ss_pred HhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc-cccccccccccccc----------
Confidence 48999999998654 22445667899999999988888763 333 34999999987642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC----ChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD----MAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.+....|+.+|.+.+.+++.++.+ +||++++|.||.+..|..... .........+.+..+.
T Consensus 149 --~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl--------- 217 (258)
T d1ae1a_ 149 --ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPM--------- 217 (258)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTT---------
T ss_pred --ccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCC---------
Confidence 2245678999999999999999988 489999999999988742211 0112333333333221
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|.+++.++........|+.+.+.+|-
T Consensus 218 ---gR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~ 252 (258)
T d1ae1a_ 218 ---GRAGKPQEVSALIAFLCFPAASYITGQIIWADGGF 252 (258)
T ss_dssp ---CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ---CCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCCe
Confidence 12677899999999999766567889999998764
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.94 E-value=1.5e-26 Score=212.68 Aligned_cols=234 Identities=12% Similarity=0.055 Sum_probs=168.5
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
++||++|||||+++||.++|+.|+++|++|++.+|+.++.+...++.........++.++.+|++|+++++++++.+
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999765444444433333223457899999999999999988775
Q ss_pred --CCcEEEEcccccCch------hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGVR------YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|++|||||..... .+.++++..+++|+.++..+.+++. +.+ .++|+++||.+...
T Consensus 82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~ii~~ss~~~~~---------- 150 (274)
T d1xhla_ 82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQ---------- 150 (274)
T ss_dssp HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSS----------
T ss_pred cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccc-cccccchhhhhccc----------
Confidence 789999999975321 1234567889999999888888774 333 33788888765431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCC---CCChHHHHHHHHHcC--CCeEEEecCCC
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGR---PDMAYFSFTRNILQG--KPITVYRGKNH 304 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~ 304 (421)
..+....|+.+|.+.+.+++.++.+ +||+|++|.||.|..|... .......-....... ..++
T Consensus 151 --~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iP------- 221 (274)
T d1xhla_ 151 --AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIP------- 221 (274)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCT-------
T ss_pred --cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCC-------
Confidence 2234578999999999999999887 4899999999999876211 010111111111111 1111
Q ss_pred CcceeecccHHHHHHHHHHhhhc-CCCCCCceEEEecCCCc
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDT-SAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~-~~~~~~~~~~~i~~~~~ 344 (421)
..-+..++|+|.+++.++.. ......|+++.+.+|..
T Consensus 222 ---lgR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~ 259 (274)
T d1xhla_ 222 ---VGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGST 259 (274)
T ss_dssp ---TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred ---CCCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHH
Confidence 11256789999999999863 33467899999998754
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.9e-27 Score=215.17 Aligned_cols=226 Identities=15% Similarity=0.075 Sum_probs=164.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV---- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~---- 164 (421)
+||++|||||+++||.++++.|+++|++|++++|+.++.++...+.. ......++.++.+|++|+++++++++.+
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~-~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALH-EQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-TTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-HhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999996543322222211 1112357889999999999999988765
Q ss_pred -CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHh----c--CCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKS----A--NPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~----~--~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
++|++|||||... ..+++..+++|+.++.++.+++.+ . +..++||++||...+- +.+
T Consensus 81 G~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~------------~~~ 144 (254)
T d2gdza1 81 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM------------PVA 144 (254)
T ss_dssp SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS------------CCT
T ss_pred CCcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc------------CCC
Confidence 7999999999864 356788999999998777776632 2 2224799999987642 224
Q ss_pred CCChHHHHHHHHHHHHHH--HHHH---hCCcEEEEEeccccCCCCCC---C-------ChHHHHHHHHHcCCCeEEEecC
Q 043169 238 PASLYAATKKAGEEIAHT--YNHI---YGLSITGLRFFTVYGPWGRP---D-------MAYFSFTRNILQGKPITVYRGK 302 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~--~~~~---~gi~~~~vrp~~v~G~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~ 302 (421)
....|+.||.+.+.+++. ++.+ +||+|++|.||.|-.|-... . .....+...+..
T Consensus 145 ~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------- 214 (254)
T d2gdza1 145 QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKY---------- 214 (254)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHHH----------
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCCC----------
Confidence 457899999999999885 4444 58999999999997651000 0 000111111111
Q ss_pred CCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccCHHH
Q 043169 303 NHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVTVPK 349 (421)
Q Consensus 303 ~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t~~e 349 (421)
.-+..++|+|++++.++.++ ...|+++.|.+|..+.++|
T Consensus 215 ------~r~~~pedvA~~v~fL~s~~--~itG~~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 215 ------YGILDPPLIANGLITLIEDD--ALNGAIMKITTSKGIHFQD 253 (254)
T ss_dssp ------HCCBCHHHHHHHHHHHHHCT--TCSSCEEEEETTTEEEECC
T ss_pred ------CCCcCHHHHHHHHHHHHcCC--CCCCCEEEECCCCeeeccc
Confidence 12456899999999999876 4789999999988766544
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.94 E-value=5.5e-26 Score=208.73 Aligned_cols=235 Identities=14% Similarity=0.115 Sum_probs=164.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||+++++.|+++|++|++.+|+.++.++..++.........++.++.+|++|+++++++++.+
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999765443333333222223356899999999999999988775
Q ss_pred ---CCcEEEEcccccCchh--------hccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEcc-ccccCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY--------AMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASS-SSVYGLNENVP 228 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~--------~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS-~~v~g~~~~~~ 228 (421)
++|++|||||...... ..+++...+++|+.|+.++.+++.+ .+ ..+|+++| .+..
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~--g~iI~~~Ss~a~~------- 152 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSSIVAGP------- 152 (272)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGSS-------
T ss_pred HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC--Cccccccchhccc-------
Confidence 7999999999864321 1123567899999998888887633 32 25555555 4432
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCC----CCChHHHHHHHHHc-CCCeEEEe
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGR----PDMAYFSFTRNILQ-GKPITVYR 300 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~----~~~~~~~~~~~~~~-~~~~~~~~ 300 (421)
.+.+....|+.||.+.+.+++.++.+ +||+|++|.||.|-.+... .+.....+...... ...++
T Consensus 153 -----~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~P--- 224 (272)
T d1xkqa_ 153 -----QAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIP--- 224 (272)
T ss_dssp -----SCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCT---
T ss_pred -----cCCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCC---
Confidence 12234578999999999999999977 4899999999999776211 11111111111111 11111
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcC-CCCCCceEEEecCCCcc
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTS-AGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~-~~~~~~~~~~i~~~~~~ 345 (421)
..-+..++|+|++++.++..+ +....|+++.+.+|-.+
T Consensus 225 -------lgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 225 -------IGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSL 263 (272)
T ss_dssp -------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred -------CCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHHH
Confidence 112667899999999998643 23578999999887543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.93 E-value=2.7e-25 Score=201.75 Aligned_cols=221 Identities=14% Similarity=0.096 Sum_probs=163.1
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC-CHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN-DAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~- 164 (421)
+++||+||||||+++||.++|++|+++|++|++++|+.+.. ....+ ........++.++.+|++ +.++++++++.+
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~-~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-TALAE-LKAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHHH-HHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH-HHHHH-HHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence 47999999999999999999999999999999998876642 22222 223334568999999998 667777777665
Q ss_pred ----CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhc------CCCCeEEEEccccccCCCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSA------NPQPSIVWASSSSVYGLNENVPFSEADR 234 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~------~~~~riV~~SS~~v~g~~~~~~~~e~~~ 234 (421)
++|+||||||... .++++.++++|+.|+.++.+++.+. +..++||++||...+.
T Consensus 80 ~~~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~------------ 143 (254)
T d1sbya1 80 DQLKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------------ 143 (254)
T ss_dssp HHHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS------------
T ss_pred HHcCCCCEEEeCCCCCC----HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc------------
Confidence 7999999999753 4677899999999998888877331 2234899999987652
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC---CCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPW---GRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.+....|+.||.+...+++.++.+ +||+|++|.||.|.+|- ..........+.....+.
T Consensus 144 ~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-------------- 209 (254)
T d1sbya1 144 AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSH-------------- 209 (254)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTS--------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhccccC--------------
Confidence 2345678999999999999999877 48999999999998751 110000001111122222
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
....++++|++++.+++.. ..|.++.+.+|.
T Consensus 210 -~~~~~e~va~~~~~~~~~~---~tG~vi~vdgG~ 240 (254)
T d1sbya1 210 -PTQTSEQCGQNFVKAIEAN---KNGAIWKLDLGT 240 (254)
T ss_dssp -CCEEHHHHHHHHHHHHHHC---CTTCEEEEETTE
T ss_pred -CCCCHHHHHHHHHHhhhCC---CCCCEEEECCCE
Confidence 2335799999999888765 468899888764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.7e-26 Score=212.99 Aligned_cols=232 Identities=16% Similarity=0.119 Sum_probs=170.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--cCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL--NNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
.++||++|||||+++||.++|+.|+++|++|++.+|+.++.+...++...... ...++.++.+|++|+++++++++.+
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 48999999999999999999999999999999999976544444333332221 2357889999999999999988765
Q ss_pred -----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHh----cCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKS----ANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~----~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||.... ..+.++++..+++|+.|+..+.+++.+ .+. ++||++||....+
T Consensus 89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss~~~~~--------- 158 (297)
T d1yxma1 89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIVPTKAG--------- 158 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCCCTTC---------
T ss_pred HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-ccccccccccccc---------
Confidence 79999999997543 224456678999999999998887743 232 3788887754321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC--hHHHHHHHHHcCCCeEEEecCCCCc
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM--AYFSFTRNILQGKPITVYRGKNHVD 306 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (421)
.+....|+.+|.+.+.+++.++.+ +||+|++|.||.|..+...... .-..+...+.+..+
T Consensus 159 ----~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~p----------- 223 (297)
T d1yxma1 159 ----FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIP----------- 223 (297)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGST-----------
T ss_pred ----ccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCC-----------
Confidence 234578999999999999999988 4899999999999876321110 00111111111111
Q ss_pred ceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 307 LARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 307 ~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
..-+..++|+|.+++.++........|+++.|.+|..
T Consensus 224 -lgR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~s 260 (297)
T d1yxma1 224 -AKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRS 260 (297)
T ss_dssp -TSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -CCCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcChh
Confidence 1125668999999999998766678899999988753
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=9.2e-26 Score=202.65 Aligned_cols=209 Identities=14% Similarity=0.063 Sum_probs=161.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
+++|+|||||||||||++|+++|+++|. +|++++|+....... ....+....+|+.+.+++.++++++
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~---------~~~~i~~~~~D~~~~~~~~~~~~~~- 81 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE---------AYKNVNQEVVDFEKLDDYASAFQGH- 81 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG---------GGGGCEEEECCGGGGGGGGGGGSSC-
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc---------ccceeeeeeeccccccccccccccc-
Confidence 4778999999999999999999999994 899999976544321 1246788889999999988888887
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHH
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAAT 245 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~s 245 (421)
|++||+||... ...+...+.++|+.++.+++++|++.+++ +||++||..+++ .+.+.|+.+
T Consensus 82 -d~vi~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~fi~~Ss~~~~~--------------~~~~~Y~~~ 142 (232)
T d2bkaa1 82 -DVGFCCLGTTR---GKAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSSKGADK--------------SSNFLYLQV 142 (232)
T ss_dssp -SEEEECCCCCH---HHHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHH
T ss_pred -ccccccccccc---cccchhhhhhhcccccceeeecccccCcc-ccccCCcccccc--------------CccchhHHH
Confidence 99999998642 22344567889999999999999999976 999999998753 345789999
Q ss_pred HHHHHHHHHHHHHHhCC-cEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHh
Q 043169 246 KKAGEEIAHTYNHIYGL-SITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGS 324 (421)
Q Consensus 246 K~~~e~~~~~~~~~~gi-~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 324 (421)
|..+|..+.+ .++ +++|+|||.+||++... .....+...+...-+ ........+|++|+|++++.+
T Consensus 143 K~~~E~~l~~----~~~~~~~IlRP~~i~G~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~I~~~dvA~a~i~~ 209 (232)
T d2bkaa1 143 KGEVEAKVEE----LKFDRYSVFRPGVLLCDRQES-RPGEWLVRKFFGSLP--------DSWASGHSVPVVTVVRAMLNN 209 (232)
T ss_dssp HHHHHHHHHT----TCCSEEEEEECCEEECTTGGG-SHHHHHHHHHHCSCC--------TTGGGGTEEEHHHHHHHHHHH
T ss_pred HHHhhhcccc----ccccceEEecCceeecCCCcC-cHHHHHHHHHhhccC--------CcccCCCeEEHHHHHHHHHHH
Confidence 9999988766 465 48999999999986553 233344444544322 233344579999999999999
Q ss_pred hhcCCCCCCceEEEecC
Q 043169 325 LDTSAGPAPYRIFNLGN 341 (421)
Q Consensus 325 l~~~~~~~~~~~~~i~~ 341 (421)
+..+ ..++.+.+.+
T Consensus 210 ~~~~---~~~~~~i~~~ 223 (232)
T d2bkaa1 210 VVRP---RDKQMELLEN 223 (232)
T ss_dssp HTSC---CCSSEEEEEH
T ss_pred HhcC---ccCCeEEEcH
Confidence 8776 2345666653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.93 E-value=9.7e-26 Score=205.76 Aligned_cols=237 Identities=14% Similarity=0.091 Sum_probs=174.5
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++++||++|||||+++||.++++.|+++|++|++.+|+.+..++..++.... ...++.++++|++|+++++++++.+
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE--FGVKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH--HTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH--hCCceEEEEccCCCHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999887665544443332 2457899999999999999888765
Q ss_pred ----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
++|++|||||.... ..+.++++..+++|+.|+.++.+++. +.+..++|+..||...+......
T Consensus 83 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~----- 157 (260)
T d1h5qa_ 83 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS----- 157 (260)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE-----
T ss_pred HHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccc-----
Confidence 79999999998643 22445567899999999888877653 33334477777776653211000
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
.........|+.+|.+.+.+++.++.+ +||++++|.||.|-.+..... ...+...+.+.-|..
T Consensus 158 ~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~--~~~~~~~~~~~~pl~------------ 223 (260)
T d1h5qa_ 158 LNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM--DKKIRDHQASNIPLN------------ 223 (260)
T ss_dssp TTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS--CHHHHHHHHHTCTTS------------
T ss_pred cccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhcc--CHHHHHHHHhcCCCC------------
Confidence 001124567999999999999999887 489999999999987632211 123444444433321
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
-+..++|+|.+++.++........|+++.+.+|.
T Consensus 224 R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 257 (260)
T d1h5qa_ 224 RFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQ 257 (260)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred CCcCHHHHHHHHHHHhcchhCCCcCceEEECCCe
Confidence 1456799999999999776567889999998775
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=2.3e-25 Score=203.02 Aligned_cols=230 Identities=17% Similarity=0.091 Sum_probs=165.3
Q ss_pred CCCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 87 RSGGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+++||++|||||+| +||.+++++|+++|++|++.+|+++. ...............++++|++|+++++++++.+
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERL----RPEAEKLAEALGGALLFRADVTQDEELDALFAGV 80 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGG----HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHH----HHHHHHhhhccCcccccccccCCHHHHHHHHHHH
Confidence 48999999999988 89999999999999999998885421 1112222223356788999999999999988764
Q ss_pred -----CCcEEEEcccccCch--------hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGVR--------YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~--------~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|++|||||..... ....++...+++|+.++..+++++..... .++||++||.....
T Consensus 81 ~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~-------- 152 (256)
T d1ulua_ 81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK-------- 152 (256)
T ss_dssp HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS--------
T ss_pred HHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC--------
Confidence 689999999986432 12223456899999999999988753211 13899999987642
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
..+....|+.||.+.+.+++.++.+ +||+|++|.||.|..+..............+.+.-|.
T Consensus 153 ----~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl----------- 217 (256)
T d1ulua_ 153 ----VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPL----------- 217 (256)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHSTT-----------
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCC-----------
Confidence 2245678999999999999999987 4899999999999876443221122333444433322
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.-+..++|+|.+++.++........|+++.+.+|-.
T Consensus 218 -~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~ 253 (256)
T d1ulua_ 218 -RRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYH 253 (256)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -CCCcCHHHHHHHHHHHhCchhCCccCCeEEECcCEe
Confidence 115568999999999998766678899999987743
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.93 E-value=4.2e-25 Score=198.97 Aligned_cols=224 Identities=17% Similarity=0.156 Sum_probs=168.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
++||++|||||+++||.++|+.|+++|++|++.+|+.+. ..+. ......++.++++|++|+++++++++.+
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~----~~~~--~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~ 76 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL----LAEA--VAALEAEAIAVVADVSDPKAVEAVFAEALEE 76 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHH--HHTCCSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHH--HHHcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999996532 1111 1122467889999999999999988876
Q ss_pred --CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHHhcCCCC-eEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 165 --AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACKSANPQP-SIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
++|++|||||.... ..+.+++...+++|+.++.++.+++.....++ .++++||.+.. ..+
T Consensus 77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~-------------~~~ 143 (241)
T d2a4ka1 77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-------------GAF 143 (241)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-------------CHH
T ss_pred hCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc-------------ccc
Confidence 69999999998643 22344566889999999999999886554433 55555554432 113
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 238 PASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
....|+.+|.+.+.+++.+++++ ||++++|.||.+-.+.... ........+.+..+.. -+..+
T Consensus 144 ~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~--~~~~~~~~~~~~~p~~------------r~~~p 209 (241)
T d2a4ka1 144 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG--LPPWAWEQEVGASPLG------------RAGRP 209 (241)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT--SCHHHHHHHHHTSTTC------------SCBCH
T ss_pred CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHh--hhHhHHHHHHhCCCCC------------CCcCH
Confidence 45679999999999999999884 7999999999997663221 1223444444443321 25678
Q ss_pred HHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 315 DDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 315 ~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+|+|++++.++........|+++.+.+|..
T Consensus 210 ~dva~~v~fL~S~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 210 EEVAQAALFLLSEESAYITGQALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHHHHHhcchhCCCcCceEEeCCCcc
Confidence 999999999998765678899999988753
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.93 E-value=1.9e-25 Score=201.59 Aligned_cols=224 Identities=14% Similarity=0.068 Sum_probs=164.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----C
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----A 165 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~ 165 (421)
+.||||||+++||++++++|+++|++|++.++++....+...+.. .....++.++++|++|+++++++++.+ +
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~--~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI--EAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH--HHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH--HHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 479999999999999999999999999988764432111111111 112457889999999999999988765 7
Q ss_pred CcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|++|||||.... ..+.++++..+++|+.|+.++.+++ ++.+ .++||++||...+- +.+
T Consensus 80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~~~------------~~~ 146 (244)
T d1edoa_ 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASVVGLI------------GNI 146 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHH------------CCT
T ss_pred CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcC-CcEEEEEcChhhcC------------CCC
Confidence 9999999998653 2345567789999999988888876 3333 34999999977541 224
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI 314 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 314 (421)
....|+.||.+.+.+++.++.+ +||++++|.||.+-.|-... ......+.+....|. .-+..+
T Consensus 147 ~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl------------~R~~~p 212 (244)
T d1edoa_ 147 GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK--LGEDMEKKILGTIPL------------GRTGQP 212 (244)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT--TCHHHHHHHHTSCTT------------CSCBCH
T ss_pred CCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHH--hhHHHHHHHHhcCCC------------CCCcCH
Confidence 5678999999999999999988 48999999999997652111 112333444443332 125678
Q ss_pred HHHHHHHHHhh-hcCCCCCCceEEEecCCC
Q 043169 315 DDIVKGCLGSL-DTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 315 ~Dva~a~~~~l-~~~~~~~~~~~~~i~~~~ 343 (421)
+|+|++++.++ ........|+++.+.+|-
T Consensus 213 ~dvA~~v~fLa~S~~a~~itG~~i~vdGG~ 242 (244)
T d1edoa_ 213 ENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp HHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred HHHHHHHHHHHCCchhcCCcCCeEEeCCCe
Confidence 99999999885 444446789999998763
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.2e-25 Score=202.60 Aligned_cols=204 Identities=15% Similarity=0.029 Sum_probs=155.6
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++++.||+++||||+++||++++++|+++|++|++++|+.++.+...++.. ....++.++.+|++|.++++++++.+
T Consensus 2 ~~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~---~~~~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCK---GLGAKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 456899999999999999999999999999999999997654444333322 23467899999999999999988765
Q ss_pred -----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCC
Q 043169 165 -----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||.... ....+.++.++++|+.|+.++++++ ++.+ .++||++||...+.
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~~~--------- 148 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGHV--------- 148 (244)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-CC---------
T ss_pred HHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchhcC---------
Confidence 69999999998644 2234456689999999988888766 3444 34999999987642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH------hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI------YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~------~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.+....|+.||++.+.+++.++.+ .||++++|.||.|-.+-.... .
T Consensus 149 ---~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~------------------------~ 201 (244)
T d1yb1a_ 149 ---SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP------------------------S 201 (244)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT------------------------H
T ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCc------------------------C
Confidence 2234577999999999999999876 379999999999876522210 0
Q ss_pred cceeecccHHHHHHHHHHhhhcC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~ 328 (421)
......+.++|+|+.++..+...
T Consensus 202 ~~~~~~~~pe~va~~i~~~~~~~ 224 (244)
T d1yb1a_ 202 TSLGPTLEPEEVVNRLMHGILTE 224 (244)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHTT
T ss_pred ccccCCCCHHHHHHHHHHHHhcC
Confidence 01112456799999999888765
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.93 E-value=6.2e-25 Score=200.30 Aligned_cols=230 Identities=17% Similarity=0.145 Sum_probs=167.2
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
+++||+||||||+++||.+++++|+++|++|++.+++.+.. .+..... .....++.++.+|++|.++++++++.+
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~---~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKA---AEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHH---HHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999999999999999987754321 1111111 123357899999999999999888765
Q ss_pred ----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEcccc-ccCCCCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSS-VYGLNENVPFSEADR 234 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~-v~g~~~~~~~~e~~~ 234 (421)
++|++|||||..... .+.++++..+++|+.+..++++.+.+... .++++.++|.. .+.
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~------------ 147 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT------------ 147 (259)
T ss_dssp HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC------------
T ss_pred HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc------------
Confidence 689999999986432 23445668899999999888888754321 12666666643 321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC-----------CCCCChHHHHHHHHHcCCCeEEEe
Q 043169 235 TDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPW-----------GRPDMAYFSFTRNILQGKPITVYR 300 (421)
Q Consensus 235 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 300 (421)
..+....|+.+|.+.+.+++.++.+ +||++++|.||.+-.+- .........+...+.+..+.
T Consensus 148 ~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl---- 223 (259)
T d1ja9a_ 148 GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPL---- 223 (259)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTT----
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCC----
Confidence 1234578999999999999999987 48999999999987541 11111223344444444432
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|++++.++........|+++.+.+|.
T Consensus 224 --------~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG~ 258 (259)
T d1ja9a_ 224 --------KRIGYPADIGRAVSALCQEESEWINGQVIKLTGGG 258 (259)
T ss_dssp --------SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred --------CCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCCC
Confidence 12567899999999999887667889999998764
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.2e-25 Score=200.27 Aligned_cols=224 Identities=18% Similarity=0.100 Sum_probs=159.6
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
.++++|+||||||+++||.++|+.|+++|++|++.+|+.++.+...++... .....++.++++|++|+++++++++.+
T Consensus 6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~-~~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKS-AGYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 347999999999999999999999999999999999965433333322222 112357889999999999999988775
Q ss_pred ----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcC-CCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSAN-PQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~-~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
++|++|||||.... ..+.++++..+++|+.++.++.+.+ ++.+ ..++||++||.+.+..
T Consensus 85 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~-------- 156 (257)
T d1xg5a_ 85 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV-------- 156 (257)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC--------
T ss_pred HhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC--------
Confidence 79999999998643 2345556788999999988877765 3333 2359999999875421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCC--CCChHHHHHHHHHcCCCeEEEecCCC
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGR--PDMAYFSFTRNILQGKPITVYRGKNH 304 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (421)
.+......|+.+|.+.+.+++.++.+ +||++++|.||.+-.+... .+.....+...+
T Consensus 157 --~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~-------------- 220 (257)
T d1xg5a_ 157 --LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY-------------- 220 (257)
T ss_dssp --CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHH--------------
T ss_pred --CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcC--------------
Confidence 12233466999999999999988865 4799999999988664210 011111111111
Q ss_pred CcceeecccHHHHHHHHHHhhhcCCCCCCceE
Q 043169 305 VDLARDFTYIDDIVKGCLGSLDTSAGPAPYRI 336 (421)
Q Consensus 305 ~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~ 336 (421)
...-++.++|+|++++.++..+.+...|++
T Consensus 221 --~~~r~~~pedvA~~v~fL~s~~a~~itG~i 250 (257)
T d1xg5a_ 221 --EQMKCLKPEDVAEAVIYVLSTPAHIQIGDI 250 (257)
T ss_dssp --C---CBCHHHHHHHHHHHHHSCTTEEEEEE
T ss_pred --CCCCCcCHHHHHHHHHHHhCChhcCeECCE
Confidence 112356789999999999987755444554
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.92 E-value=9.8e-25 Score=196.31 Aligned_cols=201 Identities=15% Similarity=0.139 Sum_probs=151.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCc-------EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDG-------VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~-------V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
+.||||||+++||+++++.|+++|++ |++.+|+.+..++...+. .....++.++.+|++|.++++++++.
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~---~~~g~~~~~~~~Dvt~~~~v~~~~~~ 78 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC---RAEGALTDTITADISDMADVRRLTTH 78 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHH---HTTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHH---HhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 35899999999999999999999998 888888554322222111 12235788999999999999988876
Q ss_pred c-----CCcEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCC
Q 043169 164 V-----AFTHVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 164 ~-----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
+ ++|++|||||.... ..+.++++..+++|+.|+.++.+++. +.+ .++||++||...+.
T Consensus 79 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~-------- 149 (240)
T d2bd0a1 79 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSVAATK-------- 149 (240)
T ss_dssp HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--------
T ss_pred HHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC-CCceEEEechhhcC--------
Confidence 5 79999999998643 22445667899999999888887763 333 24999999987642
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+....|+.||.+.+.+++.++.+ +||++++|.||.|-.|-... - ....
T Consensus 150 ----~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~--------------~---------~~~~ 202 (240)
T d2bd0a1 150 ----AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGK--------------V---------DDEM 202 (240)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCC--------------C---------CSTT
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhh--------------c---------CHhh
Confidence 2245678999999999999999887 48999999999998762211 0 0111
Q ss_pred eeecccHHHHHHHHHHhhhcCCC
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAG 330 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~ 330 (421)
...+..++|+|++++.++..+..
T Consensus 203 ~~~~~~PedvA~~v~~l~s~~~~ 225 (240)
T d2bd0a1 203 QALMMMPEDIAAPVVQAYLQPSR 225 (240)
T ss_dssp GGGSBCHHHHHHHHHHHHTSCTT
T ss_pred HhcCCCHHHHHHHHHHHHcCCcc
Confidence 12356789999999999987643
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.3e-24 Score=195.01 Aligned_cols=216 Identities=15% Similarity=0.079 Sum_probs=159.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-CC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-AF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~~ 166 (421)
++||++|||||+++||+++++.|+++|++|++.+|+.+ . ......+++.+|+++. ++.+++++ ++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~---------~---l~~~~~~~~~~Dv~~~--~~~~~~~~g~i 67 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE---------L---LKRSGHRYVVCDLRKD--LDLLFEKVKEV 67 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH---------H---HHHTCSEEEECCTTTC--HHHHHHHSCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH---------H---HHhcCCcEEEcchHHH--HHHHHHHhCCC
Confidence 68999999999999999999999999999999999431 1 1124567889999863 44455544 57
Q ss_pred cEEEEcccccCc----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCC
Q 043169 167 THVMHLAAQAGV----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQP 238 (421)
Q Consensus 167 d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~ 238 (421)
|++|||||.... +.+.++++..+++|+.++..+.+++ ++.+. ++||++||..... +...
T Consensus 68 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~-G~ii~i~S~~~~~------------~~~~ 134 (234)
T d1o5ia_ 68 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGW-GRIVAITSFSVIS------------PIEN 134 (234)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTS------------CCTT
T ss_pred cEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccccc-ccccccccccccc------------cccc
Confidence 999999997543 2244556788999999988888776 33342 4999999977542 2245
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHH
Q 043169 239 ASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYID 315 (421)
Q Consensus 239 ~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 315 (421)
...|+.+|.+.+.+++.++.+ +||++++|.||.+..+...... -....+.+.+.-|. .-+..++
T Consensus 135 ~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~-~~~~~~~~~~~~pl------------~R~~~pe 201 (234)
T d1o5ia_ 135 LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELL-SEEKKKQVESQIPM------------RRMAKPE 201 (234)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHS-CHHHHHHHHTTSTT------------SSCBCHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhc-CHHHHHHHHhcCCC------------CCCcCHH
Confidence 678999999999999999887 4899999999999876321100 01222333333321 1266789
Q ss_pred HHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 316 DIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 316 Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
|+|.+++.++........|+++.+.+|-
T Consensus 202 diA~~v~fL~S~~s~~itG~~i~vDGG~ 229 (234)
T d1o5ia_ 202 EIASVVAFLCSEKASYLTGQTIVVDGGL 229 (234)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHHHHHHHhChhhcCCcCcEEEECccc
Confidence 9999999999776667889999998764
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=6.1e-25 Score=204.13 Aligned_cols=218 Identities=18% Similarity=0.076 Sum_probs=158.5
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCC-----hhHHHHHHHhhcCCceEEEEcccCCHHHHHH
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYD-----PSLKKARKALLNNHGVFVIEGDINDAKLLAK 159 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~ 159 (421)
|++++||++|||||+++||+++++.|+++|++|++.+|+.+... ...++..... ........+|++|.+++++
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~ 79 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEI--RRRGGKAVANYDSVEAGEK 79 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHH--HHTTCEEEEECCCGGGHHH
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHH--hhcccccccccchHHHHHH
Confidence 56689999999999999999999999999999999998765432 2222222221 1234456778888776666
Q ss_pred Hhhcc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCC
Q 043169 160 LFDAV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNEN 226 (421)
Q Consensus 160 ~~~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~ 226 (421)
+++.+ ++|+||||||+.... .+.++++..+++|+.|+.++++++ ++.+ .++||++||...+-
T Consensus 80 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS~~~~~---- 154 (302)
T d1gz6a_ 80 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASGIY---- 154 (302)
T ss_dssp HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH----
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCChhhcC----
Confidence 65543 789999999986542 244556789999999988888876 3444 24999999976531
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCC
Q 043169 227 VPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKN 303 (421)
Q Consensus 227 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (421)
.......|+.||.+.+.+++.++.+ +||++++|.||.+-.+.... .
T Consensus 155 --------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~---~-------------------- 203 (302)
T d1gz6a_ 155 --------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETV---M-------------------- 203 (302)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGG---S--------------------
T ss_pred --------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhc---C--------------------
Confidence 2245678999999999999999988 58999999999774431110 0
Q ss_pred CCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 304 HVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 304 ~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
.+....++.++|+|.+++.++.... ...|+++.+.+|
T Consensus 204 -~~~~~~~~~PedvA~~v~fL~S~~a-~itG~~i~vdGG 240 (302)
T d1gz6a_ 204 -PEDLVEALKPEYVAPLVLWLCHESC-EENGGLFEVGAG 240 (302)
T ss_dssp -CHHHHHHSCGGGTHHHHHHHTSTTC-CCCSCEEEEETT
T ss_pred -cHhhHhcCCHHHHHHHHHHHcCCCc-CCCCcEEEeCCC
Confidence 0111224456999999999886543 568899988776
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.92 E-value=2.4e-24 Score=197.96 Aligned_cols=225 Identities=16% Similarity=0.189 Sum_probs=162.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||+||||||+++||+++++.|+++|++|++++|+.++ ..+...+ ...++.++.+|++|.++++++++.+
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~----l~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAER----LAELETD--HGDNVLGIVGDVRSLEDQKQAASRCVA 75 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHH--HGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHH--cCCCeeEEecccccHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999996432 2222222 2357899999999999999888764
Q ss_pred ---CCcEEEEcccccCchh---------hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY---------AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~---------~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~ 228 (421)
++|++|||||...... ..++++..+++|+.|+.++.+++ ++.+ +++|++||...+-
T Consensus 76 ~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--g~iI~i~S~~~~~------ 147 (276)
T d1bdba_ 76 RFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR--GNVIFTISNAGFY------ 147 (276)
T ss_dssp HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTS------
T ss_pred HhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC--CCceeeeechhcc------
Confidence 7899999999754311 11235678999999988887776 3443 3889888876431
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCC--------hHHHHHHHHHcCCCeEE
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHIY--GLSITGLRFFTVYGPWGRPDM--------AYFSFTRNILQGKPITV 298 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--gi~~~~vrp~~v~G~~~~~~~--------~~~~~~~~~~~~~~~~~ 298 (421)
+.+....|+.||.+.+.+++.++.+. +|+|++|.||.|-.+-..+.. ....+...+.+..|+
T Consensus 148 ------~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl-- 219 (276)
T d1bdba_ 148 ------PNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPI-- 219 (276)
T ss_dssp ------TTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTT--
T ss_pred ------CCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCC--
Confidence 22345779999999999999999884 599999999999765321100 001122222222221
Q ss_pred EecCCCCcceeecccHHHHHHHHHHhhhc-CCCCCCceEEEecCCC
Q 043169 299 YRGKNHVDLARDFTYIDDIVKGCLGSLDT-SAGPAPYRIFNLGNTS 343 (421)
Q Consensus 299 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~-~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|.+++.++.. ..+...|++++|.+|-
T Consensus 220 ----------gR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~ 255 (276)
T d1bdba_ 220 ----------GRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGGL 255 (276)
T ss_dssp ----------SSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSG
T ss_pred ----------CCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcCh
Confidence 1145679999999988753 3446889999998763
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.92 E-value=8e-24 Score=194.33 Aligned_cols=234 Identities=12% Similarity=0.086 Sum_probs=168.4
Q ss_pred cccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHH-HhhcCCceEEEEcccCCHHHHHHHhh
Q 043169 84 QIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARK-ALLNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 84 ~~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
.+.+++||++|||||+++||.++++.|+++|++|++.+|+.+.. .+.... .......+.++++|++|++++.++++
T Consensus 12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~---~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~ 88 (272)
T d1g0oa_ 12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTES---AEEVVAAIKKNGSDAACVKANVGVVEDIVRMFE 88 (272)
T ss_dssp GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHH---HHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHH
Confidence 34458999999999999999999999999999999999865321 111111 11234678999999999999999887
Q ss_pred cc-----CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCC
Q 043169 163 AV-----AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEA 232 (421)
Q Consensus 163 ~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~ 232 (421)
.+ ++|++|||||..... ...+++...+++|+.++.++.+++.+.-. .+++++++|.....
T Consensus 89 ~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~---------- 158 (272)
T d1g0oa_ 89 EAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA---------- 158 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC----------
T ss_pred HHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc----------
Confidence 65 789999999986542 23444567899999999999998865432 23788887764321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC----------CCCChHHHHHH-HHHcCCCeEE
Q 043169 233 DRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWG----------RPDMAYFSFTR-NILQGKPITV 298 (421)
Q Consensus 233 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~----------~~~~~~~~~~~-~~~~~~~~~~ 298 (421)
.+......|+.+|.+.+.+++.++.+ +||+|++|.||.|-++.. .....-..... ...+..|.
T Consensus 159 -~~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl-- 235 (272)
T d1g0oa_ 159 -KAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPL-- 235 (272)
T ss_dssp -SSCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTT--
T ss_pred -ccccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCC--
Confidence 12234567999999999999999987 489999999999976510 00000111111 11122211
Q ss_pred EecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 299 YRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 299 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|.+++.++........|+++.|.+|.
T Consensus 236 ----------gR~~~peevA~~v~fL~s~~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 236 ----------RRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 270 (272)
T ss_dssp ----------CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred ----------CCCcCHHHHHHHHHHHhCchhcCccCceEeECCCC
Confidence 12677899999999999876667889999998874
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=2.1e-24 Score=194.13 Aligned_cols=230 Identities=20% Similarity=0.167 Sum_probs=161.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc--EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+.++||||||+|+||+++++.|+++|++ |+.+.|+.+ .. .....+++++.+|+++.+.+.++++++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~---------~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~-- 69 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ---------GK-EKIGGEADVFIGDITDADSINPAFQGI-- 69 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH---------HH-HHTTCCTTEEECCTTSHHHHHHHHTTC--
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH---------HH-HhccCCcEEEEeeeccccccccccccc--
Confidence 4679999999999999999999999976 555566321 11 123467899999999999999999987
Q ss_pred cEEEEcccccCchh-------------hccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 167 THVMHLAAQAGVRY-------------AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 167 d~vi~~Ag~~~~~~-------------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
|.|||+|+...... ...+......+|+.|+.+++..+...... ...+.|+...+.....
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~------- 141 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMGGTNPDHP------- 141 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETTTTCTTCG-------
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccccc-ccccccccccCCCCcc-------
Confidence 99999998754321 12234456789999999999999888865 8888888766532110
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeeccc
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTY 313 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 313 (421)
........|...+...+ .+....|++++++||+++|||...... ..............+++|
T Consensus 142 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ilRp~~v~g~~~~~~~--------------~~~~~~~~~~~~~~~~i~ 203 (252)
T d2q46a1 142 LNKLGNGNILVWKRKAE----QYLADSGTPYTIIRAGGLLDKEGGVRE--------------LLVGKDDELLQTDTKTVP 203 (252)
T ss_dssp GGGGGGCCHHHHHHHHH----HHHHHSSSCEEEEEECEEECSCTTSSC--------------EEEESTTGGGGSSCCEEE
T ss_pred cccccccchhhhhhhhh----hhhhcccccceeecceEEECCCcchhh--------------hhhccCcccccCCCCeEE
Confidence 01112344555555444 344457999999999999999644211 111111111244567999
Q ss_pred HHHHHHHHHHhhhcCCCCCCceEEEecCCC---ccCHHHHHHHHHHHh
Q 043169 314 IDDIVKGCLGSLDTSAGPAPYRIFNLGNTS---PVTVPKLVNILERHL 358 (421)
Q Consensus 314 v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~---~~t~~el~~~l~~~~ 358 (421)
++|+|++++.+|+++ ...+++|||+++. ..++.|+.+++.+..
T Consensus 204 ~~Dva~a~~~~l~~~--~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 204 RADVAEVCIQALLFE--EAKNKAFDLGSKPEGTSTPTKDFKALFSQVT 249 (252)
T ss_dssp HHHHHHHHHHHTTCG--GGTTEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCc--cccCcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence 999999999999887 4568999998743 356777776665543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.5e-24 Score=192.05 Aligned_cols=225 Identities=15% Similarity=0.116 Sum_probs=169.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-C
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-A 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-~ 165 (421)
+++||++|||||+++||+++++.|+++|++|++.+|++++ ..+.....++....+|+.+.+.++...+.+ +
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~--------l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 74 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESK--------LQELEKYPGIQTRVLDVTKKKQIDQFANEVER 74 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH--------HGGGGGSTTEEEEECCTTCHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH--------HHHHHhccCCceeeeecccccccccccccccc
Confidence 3899999999999999999999999999999999995421 122234567889999999999888888776 7
Q ss_pred CcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHHH----hcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 166 FTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEACK----SANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
+|++|||||..... .+.++++..+++|+.++..+.+++. +.+ .++||++||...- ..+..
T Consensus 75 id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~-~g~Ii~isS~~~~-----------~~~~~ 142 (245)
T d2ag5a1 75 LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSVASS-----------VKGVV 142 (245)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTT-----------TBCCT
T ss_pred ceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCC-Cceeeeeechhhc-----------cCCcc
Confidence 89999999987542 2344567889999999988888764 333 3499999986531 01224
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC----CChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP----DMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
....|+.+|.+.+.+++.++.+ +||++++|.||.|-+|.... ......+...+.+.-+. .-
T Consensus 143 ~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl------------~R 210 (245)
T d2ag5a1 143 NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKT------------GR 210 (245)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTT------------SS
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCC------------CC
Confidence 5678999999999999999988 48999999999998762110 00112233334443322 12
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
+..++|+|+++..++........|+++.|.+|.
T Consensus 211 ~~~pedva~~v~fL~s~~s~~iTG~~i~VDGG~ 243 (245)
T d2ag5a1 211 FATAEEIAMLCVYLASDESAYVTGNPVIIDGGW 243 (245)
T ss_dssp CEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred CcCHHHHHHHHHHHhChhhCCCcCceEEeCCCc
Confidence 567899999999999876667889999998774
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=4.6e-24 Score=194.60 Aligned_cols=227 Identities=14% Similarity=0.086 Sum_probs=160.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHH---CCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKK---RGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
.++||+++||||+++||.++|++|++ +|++|++++|+.+..++..++.... ....++.++.+|++|+++++++++.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQ-QPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHH-CTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhh-cCCceEEEEEccCCCHHHHHHHHHH
Confidence 37899999999999999999999987 7999999999665443333322221 2345789999999999999888754
Q ss_pred c---------CCcEEEEcccccCch----h---hccCCchhhhhhHHHHHHHHHHHHhcCC-----CCeEEEEccccccC
Q 043169 164 V---------AFTHVMHLAAQAGVR----Y---AMQNPHSYVHSNIAGLVTLLEACKSANP-----QPSIVWASSSSVYG 222 (421)
Q Consensus 164 ~---------~~d~vi~~Ag~~~~~----~---~~~~~~~~~~~N~~g~~~l~~~~~~~~~-----~~riV~~SS~~v~g 222 (421)
+ .+|++|||||..... . ..++++.++++|+.|+.++.+++.+.-. .++||++||...+.
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 2 468999999975421 1 2234567899999999999998854321 24899999987642
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-hCCcEEEEEeccccCCCCCC---CChHHHHHHHHHcCCCeEE
Q 043169 223 LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI-YGLSITGLRFFTVYGPWGRP---DMAYFSFTRNILQGKPITV 298 (421)
Q Consensus 223 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~gi~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~ 298 (421)
+.+....|+.||.+.+.+++.++.+ .||++++|.||.|.++.... ....+.....+....+
T Consensus 162 ------------~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~--- 226 (259)
T d1oaaa_ 162 ------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKS--- 226 (259)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHH---
T ss_pred ------------CCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcCC---
Confidence 2345688999999999999999877 58999999999998762100 0000011111111000
Q ss_pred EecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEe
Q 043169 299 YRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNL 339 (421)
Q Consensus 299 ~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i 339 (421)
..-+..++|+|++++.+++.. ....|+.+++
T Consensus 227 ---------~~r~~~p~evA~~i~~ll~~~-s~~TG~~idv 257 (259)
T d1oaaa_ 227 ---------DGALVDCGTSAQKLLGLLQKD-TFQSGAHVDF 257 (259)
T ss_dssp ---------TTCSBCHHHHHHHHHHHHHHC-CSCTTEEEET
T ss_pred ---------CCCCCCHHHHHHHHHHHhhhc-cCCCCCeEEe
Confidence 011456899999999999765 3566777665
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.91 E-value=1.3e-23 Score=195.21 Aligned_cols=232 Identities=10% Similarity=0.058 Sum_probs=166.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+|+||.++|++|+++|++|++++|+.++.++..++.... ....+.++.+|++|.++++++++..
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~--~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ--TGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--HSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh--cCCceEEEEecccChHHHHHHhhhhhh
Confidence 589999999999999999999999999999999999765444443333322 3467889999999999998877664
Q ss_pred ---CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
++|++|||||...... ...+....+.+|..+...+...+ ......+.++.+||.....
T Consensus 100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~----------- 168 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET----------- 168 (294)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-----------
T ss_pred hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh-----------
Confidence 7999999999865422 22234567888888876666554 2233333677777765421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-ChHHHHHHHHHcCCCeEEEecCCCCccee
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPD-MAYFSFTRNILQGKPITVYRGKNHVDLAR 309 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
......+|+.+|.+.+.+++.++.+ +||+|++|.||.|..+..... .........+.+.-+. .
T Consensus 169 -~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl------------~ 235 (294)
T d1w6ua_ 169 -GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPC------------G 235 (294)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTT------------S
T ss_pred -cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCC------------C
Confidence 2234567999999999999999987 489999999999987643211 0111233444443332 1
Q ss_pred ecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 310 DFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 310 ~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
-+..++|+|.++..++........|+++.+.+|..
T Consensus 236 R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG~~ 270 (294)
T d1w6ua_ 236 RLGTVEELANLAAFLCSDYASWINGAVIKFDGGEE 270 (294)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHH
T ss_pred CCCCHHHHHHHHHHHhCchhcCCCCcEEEECCChh
Confidence 25568999999999998765578899999988753
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.90 E-value=4.1e-24 Score=193.91 Aligned_cols=218 Identities=14% Similarity=0.089 Sum_probs=159.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----CC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-----AF 166 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-----~~ 166 (421)
++|||||+++||.++|+.|+++|++|++.+|+.+..++... . ...+..+|++|.++++++++.+ ++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~-~--------~~~~~~~dv~~~~~~~~~~~~~~~~~G~i 72 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-F--------AETYPQLKPMSEQEPAELIEAVTSAYGQV 72 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-H--------HHHCTTSEECCCCSHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh-h--------hCcEEEeccCCHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999999987654332211 1 1123457888877777766554 78
Q ss_pred cEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCCCC
Q 043169 167 THVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRTDQ 237 (421)
Q Consensus 167 d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~ 237 (421)
|++|||||.... ..+.++++..+++|+.++.++.+++ ++.+ .++||++||...+. +.+
T Consensus 73 DiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~~~------------~~~ 139 (252)
T d1zmta1 73 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFG------------PWK 139 (252)
T ss_dssp CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTS------------CCT
T ss_pred CEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeeccccccccc------------ccc
Confidence 999999997532 1234556788999999988888876 3434 24999999987642 223
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC------hHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 238 PASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDM------AYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 238 ~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
....|+.||.+.+.+++.++.+ +||+|++|.||.|.++...... ..+.....+.+..++.
T Consensus 140 ~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~----------- 208 (252)
T d1zmta1 140 ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQ----------- 208 (252)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSS-----------
T ss_pred cccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCC-----------
Confidence 4578999999999999999987 4899999999999876432111 0122333333332211
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
-+..++|+|.+++.++........|+++.+.+|-
T Consensus 209 -R~g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG~ 242 (252)
T d1zmta1 209 -RLGTQKELGELVAFLASGSCDYLTGQVFWLAGGF 242 (252)
T ss_dssp -SCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred -CCcCHHHHHHHHHHHhCchhcCCcCCeEEECCCc
Confidence 1567899999999999877667789999998874
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.90 E-value=2e-22 Score=191.89 Aligned_cols=241 Identities=15% Similarity=0.084 Sum_probs=169.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH-HHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA-KLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~~~~d 167 (421)
+.|+|+||||||+||++|+++|+++|++|+++.|+.++. ........++++++++|++|. +.+..++..+ |
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~------~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~--~ 73 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL------IAEELQAIPNVTLFQGPLLNNVPLMDTLFEGA--H 73 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH------HHHHHHTSTTEEEEESCCTTCHHHHHHHHTTC--S
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh------hhhhhcccCCCEEEEeeCCCcHHHHHHHhcCC--c
Confidence 568999999999999999999999999999999966431 112223447899999999985 4577788877 8
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
.++++.... ...|+..+.+++++|++.+.+ ++|+.||....... ...+...|..+|.
T Consensus 74 ~~~~~~~~~------------~~~~~~~~~~~~~aa~~agv~-~~v~~Ss~~~~~~~----------~~~~~~~~~~~k~ 130 (350)
T d1xgka_ 74 LAFINTTSQ------------AGDEIAIGKDLADAAKRAGTI-QHYIYSSMPDHSLY----------GPWPAVPMWAPKF 130 (350)
T ss_dssp EEEECCCST------------TSCHHHHHHHHHHHHHHHSCC-SEEEEEECCCGGGT----------SSCCCCTTTHHHH
T ss_pred eEEeecccc------------cchhhhhhhHHHHHHHHhCCC-ceEEEeeccccccC----------CcccchhhhhhHH
Confidence 877765321 135677889999999999976 77777776543211 1123456778888
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccH-HHHHHHHHHhhh
Q 043169 248 AGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYI-DDIVKGCLGSLD 326 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~Dva~a~~~~l~ 326 (421)
..+.+..+ .+++++++||+..++......... +.......... .+..+.+++..++++++ +|+++++..++.
T Consensus 131 ~~~~~~~~----~~~~~~~vr~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~ 203 (350)
T d1xgka_ 131 TVENYVRQ----LGLPSTFVYAGIYNNNFTSLPYPL--FQMELMPDGTF-EWHAPFDPDIPLPWLDAEHDVGPALLQIFK 203 (350)
T ss_dssp HHHHHHHT----SSSCEEEEEECEEGGGCBSSSCSS--CBEEECTTSCE-EEEESSCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----hccCceeeeeceeecccccccccc--ccccccccccc-eeeecccCCCcceEEEeHHHHHHHHHHHHh
Confidence 87776554 579999999999887432211100 00001111112 22223467778888886 799999999987
Q ss_pred cCCCCCCceEEEecCCCccCHHHHHHHHHHHhCCccccceec
Q 043169 327 TSAGPAPYRIFNLGNTSPVTVPKLVNILERHLKVKAKKNVIE 368 (421)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~t~~el~~~l~~~~g~~~~~~~~~ 368 (421)
.......|+.|++++ +.+|+.|+++.+.+.+|.+.+...+|
T Consensus 204 ~~~~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp 244 (350)
T d1xgka_ 204 DGPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVP 244 (350)
T ss_dssp HCHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECS
T ss_pred CChhhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECC
Confidence 642234678999986 56999999999999999987655544
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.89 E-value=1.1e-22 Score=184.05 Aligned_cols=174 Identities=17% Similarity=0.076 Sum_probs=132.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHH---HCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALK---KRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~---~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++|+||||||+++||.++|+.|+ ++|++|++.+|+.++.++.. .. .....++.++.+|++|+++++++++.+
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~-~~---~~~~~~~~~~~~Dvs~~~~v~~~~~~i~ 76 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE-DL---AKNHSNIHILEIDLRNFDAYDKLVADIE 76 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH-HH---HHHCTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HH---HhcCCcEEEEEEEeccHHHHHHHHhhhH
Confidence 46899999999999999999997 47999999999887765432 21 123468999999999999888877642
Q ss_pred ------CCcEEEEcccccCch--h---hccCCchhhhhhHHHHHHHHHHHH----hc----------CCCCeEEEEcccc
Q 043169 165 ------AFTHVMHLAAQAGVR--Y---AMQNPHSYVHSNIAGLVTLLEACK----SA----------NPQPSIVWASSSS 219 (421)
Q Consensus 165 ------~~d~vi~~Ag~~~~~--~---~~~~~~~~~~~N~~g~~~l~~~~~----~~----------~~~~riV~~SS~~ 219 (421)
++|++|||||+.... . ..++.+..+++|+.|+..+++++. +. ...+++|++||..
T Consensus 77 ~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~ 156 (248)
T d1snya_ 77 GVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL 156 (248)
T ss_dssp HHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred HHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 689999999986432 1 223355789999999888887762 21 1134899999975
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 043169 220 VYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGP 275 (421)
Q Consensus 220 v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~ 275 (421)
..-. ..+......|+.||.+...+++.++.+ .||++++|+||.|-.+
T Consensus 157 g~~~---------~~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 157 GSIQ---------GNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp GCST---------TCCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred cccC---------CCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence 3210 012234568999999999999999877 4899999999999876
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.7e-23 Score=189.53 Aligned_cols=173 Identities=18% Similarity=0.163 Sum_probs=131.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh--hHHH-HHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDP--SLKK-ARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~-~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.|.||||||++|||.++|+.|+++|++|+.+.+.....+. ...+ .........++.++.+|++|.+++.++++.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 3678999999999999999999999886655443222211 1111 2222234568999999999999999998776
Q ss_pred -CCcEEEEcccccCch----hhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVR----YAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
++|+||||||..... .+.++++..+++|+.|+.++.+++ ++.+. ++||++||.+..- +
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~-G~Iv~isS~~g~~------------~ 148 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGS-GRVLVTGSVGGLM------------G 148 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEEGGGTS------------C
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCC-CceEEEechhhcC------------C
Confidence 689999999986542 234456788999999988888776 44442 4999999987642 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGP 275 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~ 275 (421)
.+....|+.||.+.+.+++.++.+ +||++++|.||.|-.+
T Consensus 149 ~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 149 LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 245678999999999999999988 4899999999999775
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=5.2e-23 Score=181.81 Aligned_cols=189 Identities=13% Similarity=0.112 Sum_probs=134.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.|+|||||||||||++|+++|+++|+ +|+.+.|+... ..+. +..+..|..++.+.+.. .+|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------------~~~~---~~~~~~d~~~~~~~~~~-~~d 64 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------------EHPR---LDNPVGPLAELLPQLDG-SID 64 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------------CCTT---EECCBSCHHHHGGGCCS-CCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------------hccc---ccccccchhhhhhcccc-chh
Confidence 48999999999999999999999997 56666663321 1122 34455565544333322 469
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKK 247 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~ 247 (421)
.|||++|... ....+...+.++|+.++.+++++|++.+++ ++|++||..+++ .+.+.|+.+|.
T Consensus 65 ~vi~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~~i~~Ss~~~~~--------------~~~~~y~~~K~ 127 (212)
T d2a35a1 65 TAFCCLGTTI--KEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADA--------------KSSIFYNRVKG 127 (212)
T ss_dssp EEEECCCCCH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHHHH
T ss_pred eeeeeeeeec--cccccccccccchhhhhhhccccccccccc-cccccccccccc--------------ccccchhHHHH
Confidence 9999998642 223445678999999999999999999976 999999988763 34578999999
Q ss_pred HHHHHHHHHHHHhCC-cEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhh
Q 043169 248 AGEEIAHTYNHIYGL-SITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLD 326 (421)
Q Consensus 248 ~~e~~~~~~~~~~gi-~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~ 326 (421)
.+|..+++ .+. +++++||+.||||....... . .. ..++... ....+..+|++|+|++++.+++
T Consensus 128 ~~E~~l~~----~~~~~~~I~Rp~~v~G~~~~~~~~--~----~~-~~~~~~~-----~~~~~~~i~v~DvA~ai~~~~~ 191 (212)
T d2a35a1 128 ELEQALQE----QGWPQLTIARPSLLFGPREEFRLA--E----IL-AAPIARI-----LPGKYHGIEACDLARALWRLAL 191 (212)
T ss_dssp HHHHHHTT----SCCSEEEEEECCSEESTTSCEEGG--G----GT-TCCCC---------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhccc----cccccceeeCCcceeCCcccccHH--H----HH-HHHHhhc-----cCCCCcEEEHHHHHHHHHHHHc
Confidence 99987764 465 59999999999986543211 0 11 1111111 0123456999999999999998
Q ss_pred cC
Q 043169 327 TS 328 (421)
Q Consensus 327 ~~ 328 (421)
++
T Consensus 192 ~~ 193 (212)
T d2a35a1 192 EE 193 (212)
T ss_dssp CC
T ss_pred CC
Confidence 76
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.4e-22 Score=181.99 Aligned_cols=220 Identities=13% Similarity=0.103 Sum_probs=157.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
+++||++|||||+++||.+++++|+++|++|++++|+.+..+...++ .........+|+.+.+.+++.....
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK------LGNNCVFAPADVTSEKDVQTALALAKG 75 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH------HCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH------hCCCccccccccccccccccccccccc
Confidence 58999999999999999999999999999999999987654333221 2357888999999988877766543
Q ss_pred ---CCcEEEEcccccCch----------hhccCCchhhhhhHHHHHHHHHHHHhc---------CCCCeEEEEccccccC
Q 043169 165 ---AFTHVMHLAAQAGVR----------YAMQNPHSYVHSNIAGLVTLLEACKSA---------NPQPSIVWASSSSVYG 222 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~----------~~~~~~~~~~~~N~~g~~~l~~~~~~~---------~~~~riV~~SS~~v~g 222 (421)
..|.++++++..... ...+++...+++|+.++.++.+++.+. ...++||++||...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~ 155 (248)
T d2o23a1 76 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE 155 (248)
T ss_dssp HHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred ccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc
Confidence 679999998764321 122345578999999999999987432 1123899999987642
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEE
Q 043169 223 LNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVY 299 (421)
Q Consensus 223 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (421)
+.+....|+.||.+.+.+++.++.+ +||++++|.||.+..+.... ....+...+.+..+.
T Consensus 156 ------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl--- 218 (248)
T d2o23a1 156 ------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS--LPEKVCNFLASQVPF--- 218 (248)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHTCSS---
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhc--CCHHHHHHHHhcCCC---
Confidence 2245678999999999999999988 48999999999998763221 111122222222211
Q ss_pred ecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEe
Q 043169 300 RGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNL 339 (421)
Q Consensus 300 ~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i 339 (421)
..-+..++|+|++++.++++. ...|++.+|
T Consensus 219 --------~~R~g~peevA~~v~fL~s~~--~itGq~I~v 248 (248)
T d2o23a1 219 --------PSRLGDPAEYAHLVQAIIENP--FLNGEVIRL 248 (248)
T ss_dssp --------SCSCBCHHHHHHHHHHHHHCT--TCCSCEEEE
T ss_pred --------CCCCcCHHHHHHHHHHHHhCC--CCCceEeEC
Confidence 011567899999999988754 567777664
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.1e-22 Score=187.04 Aligned_cols=183 Identities=17% Similarity=0.093 Sum_probs=133.4
Q ss_pred CCEE-EEEcCCChhHHHHHHHHHHC-CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 90 GMSV-LVTGAAGFVGTHVSLALKKR-GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 90 ~k~v-lITG~sG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
||+| |||||++|||.++|++|+++ |++|++.+|+.++.+...++... ...++.++++|++|.++++++++.+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dvs~~~sv~~~~~~~~~~ 78 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA---EGLSPRFHQLDIDDLQSIRALRDFLRKE 78 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEEecCCHHHHHHHHHHHHHh
Confidence 5665 89999999999999999986 89999999977655444444332 2467899999999999999888765
Q ss_pred --CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccC-CCCCCC--------
Q 043169 165 --AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYG-LNENVP-------- 228 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g-~~~~~~-------- 228 (421)
++|+||||||+..... ..++.+..+++|+.|+.++++++...- ..++||++||..... .....+
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~ 158 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRS 158 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHC
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcc
Confidence 7999999999875422 233455789999999999999885421 123999999965321 000000
Q ss_pred --CC------------------CCCCCCCCCChHHHHHHHHHHHHHHHHHH-------hCCcEEEEEeccccCC
Q 043169 229 --FS------------------EADRTDQPASLYAATKKAGEEIAHTYNHI-------YGLSITGLRFFTVYGP 275 (421)
Q Consensus 229 --~~------------------e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-------~gi~~~~vrp~~v~G~ 275 (421)
.. .......+...|+.||++...+++.++++ .||++++|+||.|-.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 159 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred cccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 00 00011234578999999998888776654 2899999999999765
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.88 E-value=4.7e-22 Score=180.10 Aligned_cols=217 Identities=16% Similarity=0.087 Sum_probs=148.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
++|+||||||+++||.++|++|+++|+ +|++.+|+.++.++ .......++.++.+|++|.++++++++.+
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~------l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 75 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE------LKSIKDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH------HHTCCCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH------HHHhhCCceEEEEEecCCHHHHHHHHHHHHH
Confidence 568999999999999999999999996 68888887654322 12234568999999999999998887654
Q ss_pred -----CCcEEEEcccccCch-----hhccCCchhhhhhHHHHHHHHHHHH----hcC----------CCCeEEEEccccc
Q 043169 165 -----AFTHVMHLAAQAGVR-----YAMQNPHSYVHSNIAGLVTLLEACK----SAN----------PQPSIVWASSSSV 220 (421)
Q Consensus 165 -----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~----~~~----------~~~riV~~SS~~v 220 (421)
.+|+||||||+.... ...++.+..+++|+.|+.++.+++. +.+ ...+++.+||...
T Consensus 76 ~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~ 155 (250)
T d1yo6a1 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred HhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccc
Confidence 489999999986431 1223456789999999888888763 211 1237888888654
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeE
Q 043169 221 YGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT 297 (421)
Q Consensus 221 ~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 297 (421)
+-.... ......+...|+.||++...+++.++.+ .||++++|+||.|-.+-.. .
T Consensus 156 ~~~~~~-----~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~---------------~--- 212 (250)
T d1yo6a1 156 SITDNT-----SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG---------------K--- 212 (250)
T ss_dssp CSTTCC-----STTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------
T ss_pred cccCCc-----ccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCC---------------C---
Confidence 321110 0011234457999999999999999987 4899999999998764100 0
Q ss_pred EEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 298 VYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 298 ~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
. ..+.+++.++.++..+........|+.|+ .++.|+.
T Consensus 213 ------~-----~~~~~e~~a~~~~~~~~~~~~~~sG~f~~-~~g~p~~ 249 (250)
T d1yo6a1 213 ------N-----AALTVEQSTAELISSFNKLDNSHNGRFFM-RNLKPYE 249 (250)
T ss_dssp -----------------HHHHHHHHHHHTTCCGGGTTCEEE-TTEEECC
T ss_pred ------C-----CCCCHHHHHHHHHHHHhcCCCCCCeEEEC-CCCeeCC
Confidence 0 12346888999988887654444566554 3455543
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.1e-21 Score=178.55 Aligned_cols=229 Identities=12% Similarity=0.099 Sum_probs=165.4
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++||+||||||+| +||+++|+.|+++|++|++.+|+++ ..... ...........+...|+.+..++.+.++..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK-LKGRV---EEFAAQLGSDIVLQCDVAEDASIDTMFAELG 78 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT-THHHH---HHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH-HHHHH---HHHHhhcCCcceeecccchHHHHHHHHHHhh
Confidence 7899999999999 8999999999999999999999743 22222 222223456788899999998888877654
Q ss_pred ----CCcEEEEcccccCchhh---------ccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVRYA---------MQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFS 230 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~~~---------~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~ 230 (421)
++|++||||+....... .+.....+.+|+.+...+.+++.... ..+.||++||.....
T Consensus 79 ~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~-------- 150 (258)
T d1qsga_ 79 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-------- 150 (258)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS--------
T ss_pred hcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc--------
Confidence 68999999988654221 11123456777888888888775432 123788888876431
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcc
Q 043169 231 EADRTDQPASLYAATKKAGEEIAHTYNHIY---GLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDL 307 (421)
Q Consensus 231 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
+.+....|+.||.+.+.+++.++.+. ||++++|+||.|..+..............+.+..|+
T Consensus 151 ----~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl----------- 215 (258)
T d1qsga_ 151 ----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPI----------- 215 (258)
T ss_dssp ----BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT-----------
T ss_pred ----CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCCC-----------
Confidence 22445789999999999999999884 799999999999887543222223333334333321
Q ss_pred eeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 308 ARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 308 ~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
.-+..++|+|.++..++........|+++.+.+|-.
T Consensus 216 -~R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 216 -RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFS 251 (258)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred -CCCcCHHHHHHHHHHHhCchhcCccCceEEECcCHH
Confidence 115668999999999997766678999999988754
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.88 E-value=1.3e-21 Score=178.32 Aligned_cols=208 Identities=17% Similarity=0.106 Sum_probs=151.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc---
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV--- 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~--- 164 (421)
.+++||||||+|+||.+++++|+++|++ |+++.|+....+...+....-.....++.++.+|++|.++++++++.+
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~ 87 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 87 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc
Confidence 4569999999999999999999999984 788888654444443333222233467999999999999999998775
Q ss_pred -CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCCCCCCCCCCCCC
Q 043169 165 -AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVPFSEADRTDQPA 239 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~ 239 (421)
++|.||||||...... ..++.+..+++|+.|+.++.+++...+.. +||++||....- .....
T Consensus 88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~-~iv~~SS~a~~~------------g~~~~ 154 (259)
T d2fr1a1 88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAF------------GAPGL 154 (259)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHT------------CCTTC
T ss_pred ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCc-eEeeecchhhcc------------CCccc
Confidence 5899999999865422 22334567999999999999988776644 999999976541 22456
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHH
Q 043169 240 SLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVK 319 (421)
Q Consensus 240 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 319 (421)
..|+.+|...+.++++++. .|+++++|+||.+.+++..... . ...+.. .-...+.++++++
T Consensus 155 ~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~~~~----~-~~~~~~-------------~G~~~~~~~~~~~ 215 (259)
T d2fr1a1 155 GGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEGP----V-ADRFRR-------------HGVIEMPPETACR 215 (259)
T ss_dssp TTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-----------------CTT-------------TTEECBCHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCccccch----H-HHHHHh-------------cCCCCCCHHHHHH
Confidence 7899999999999998876 4999999999998876432211 0 011111 1123567899999
Q ss_pred HHHHhhhcC
Q 043169 320 GCLGSLDTS 328 (421)
Q Consensus 320 a~~~~l~~~ 328 (421)
++..++...
T Consensus 216 ~l~~~l~~~ 224 (259)
T d2fr1a1 216 ALQNALDRA 224 (259)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 999999876
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.86 E-value=1.6e-21 Score=174.94 Aligned_cols=204 Identities=12% Similarity=0.085 Sum_probs=147.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc-----
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA----- 163 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~----- 163 (421)
+||+||||||+|+||.++++.|+++|++|++++++.+.. ......+.+|..+.++.+++.+.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE-------------ASASVIVKMTDSFTEQADQVTAEVGKLL 67 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT-------------SSEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc-------------ccccceeecccCcHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999998855421 12334556666665554443322
Q ss_pred --cCCcEEEEcccccCc-----hhhccCCchhhhhhHHHHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCCCCCC
Q 043169 164 --VAFTHVMHLAAQAGV-----RYAMQNPHSYVHSNIAGLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSEADRT 235 (421)
Q Consensus 164 --~~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e~~~~ 235 (421)
.++|+||||||.... ....++++..+++|+.++.++.+++.+.. ..++||++||.+.+. +
T Consensus 68 ~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------~ 135 (236)
T d1dhra_ 68 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD------------G 135 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------C
T ss_pred CCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC------------C
Confidence 258999999996432 11234456789999999888888775321 123999999987642 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceee
Q 043169 236 DQPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARD 310 (421)
Q Consensus 236 ~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (421)
.+....|+.||.+.+.+++.++.+ .||++++|.||.+..| +.+...... ..-.
T Consensus 136 ~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~----------~~~~~~~~~------------~~~~ 193 (236)
T d1dhra_ 136 TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP----------MNRKSMPEA------------DFSS 193 (236)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH----------HHHHHSTTS------------CGGG
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC----------cchhhCccc------------hhhc
Confidence 244678999999999999999866 3799999999999875 111111111 1123
Q ss_pred cccHHHHHHHHHHhhhcCCCCCCceEEEe
Q 043169 311 FTYIDDIVKGCLGSLDTSAGPAPYRIFNL 339 (421)
Q Consensus 311 ~i~v~Dva~a~~~~l~~~~~~~~~~~~~i 339 (421)
++.++++|+.+..++........|+.+.+
T Consensus 194 ~~~pe~va~~~~~l~s~~~~~i~G~~i~v 222 (236)
T d1dhra_ 194 WTPLEFLVETFHDWITGNKRPNSGSLIQV 222 (236)
T ss_dssp SEEHHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCccCCCCCeEEE
Confidence 67789999999999877655567777665
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.2e-21 Score=179.17 Aligned_cols=204 Identities=17% Similarity=0.115 Sum_probs=150.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc--
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV-- 164 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~-- 164 (421)
.++||++|||||++|||.++|++|+++|++|++++|+.++.+....+.. ......+.++.+|+.+.+.+....+.+
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 88 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL--ELGAASAHYIAGTMEDMTFAEQFVAQAGK 88 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--HHTCSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh--hhhcccchhhhhhhhhHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999996654333322211 123467888999999998887776654
Q ss_pred ---CCcEEEEcccccCchh----hccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCCCCCCCCCCC
Q 043169 165 ---AFTHVMHLAAQAGVRY----AMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLNENVPFSEAD 233 (421)
Q Consensus 165 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~~~~~~~e~~ 233 (421)
.+|+++||||...... ..++.+..+++|+.|+..+.+.+ ++.+ ++||++||.+.+-
T Consensus 89 ~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~--G~ii~isS~~~~~----------- 155 (269)
T d1xu9a_ 89 LMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN--GSIVVVSSLAGKV----------- 155 (269)
T ss_dssp HHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEGGGTS-----------
T ss_pred HhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC--CcceEeccchhcC-----------
Confidence 5799999999864322 23344578999999987777766 3333 3999999987642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 234 RTDQPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 234 ~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
+.+....|+.||++.+.+++.++.+ +||+|+.|.||.|-.+ +......+. ..
T Consensus 156 -~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~----------~~~~~~~~~------------~~ 212 (269)
T d1xu9a_ 156 -AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE----------TAMKAVSGI------------VH 212 (269)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH----------HHHHHSCGG------------GG
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc----------HHHHhccCC------------cc
Confidence 2345689999999999999999876 3699999999999764 222222111 12
Q ss_pred eecccHHHHHHHHHHhhhcC
Q 043169 309 RDFTYIDDIVKGCLGSLDTS 328 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~ 328 (421)
......+++|+.++..+...
T Consensus 213 ~~~~~~e~~a~~i~~~~~~~ 232 (269)
T d1xu9a_ 213 MQAAPKEECALEIIKGGALR 232 (269)
T ss_dssp GGCBCHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHhhcC
Confidence 23456789999998877654
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.85 E-value=5.6e-21 Score=176.36 Aligned_cols=227 Identities=13% Similarity=-0.002 Sum_probs=153.9
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceE-----------------EEEcccCCH
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVF-----------------VIEGDINDA 154 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-----------------~~~~Dl~d~ 154 (421)
.+|||||+++||+++|+.|+++|++|++.++++............. ....... ...+|+++.
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~ 82 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNA-RRPNSAITVQADLSNVATAPVSGADGSAPVTLF 82 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-HSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHh-hcCCceEEEEeecccccccccccccccccCCCH
Confidence 6899999999999999999999999999887553222211111111 1122333 345669999
Q ss_pred HHHHHHhhcc-----CCcEEEEcccccCchh----hccCCc--------------hhhhhhHHHHHHHHHHHHh------
Q 043169 155 KLLAKLFDAV-----AFTHVMHLAAQAGVRY----AMQNPH--------------SYVHSNIAGLVTLLEACKS------ 205 (421)
Q Consensus 155 ~~~~~~~~~~-----~~d~vi~~Ag~~~~~~----~~~~~~--------------~~~~~N~~g~~~l~~~~~~------ 205 (421)
++++++++.+ ++|++|||||...... ..++++ ..+.+|+.++..+.+++.+
T Consensus 83 ~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 162 (284)
T d1e7wa_ 83 TRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTP 162 (284)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhH
Confidence 9998888764 7899999999864321 111111 2578899999888887532
Q ss_pred ---cCCCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC
Q 043169 206 ---ANPQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRP 279 (421)
Q Consensus 206 ---~~~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~ 279 (421)
.+...+||+++|.... .+......|+.+|.+.+.+++.++.+ +||++++|.||.+-.....
T Consensus 163 ~~~~~~~~~ii~~~s~~~~------------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~~~- 229 (284)
T d1e7wa_ 163 AKHRGTNYSIINMVDAMTN------------QPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDM- 229 (284)
T ss_dssp GGGSCSCEEEEEECCTTTT------------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGGGS-
T ss_pred HHhcCCCCccccccccccc------------CCccceeeeccccccchhhhHHHHHHhCCccccccccccccccccccC-
Confidence 2222378888877643 12245678999999999999999987 4899999999974332211
Q ss_pred CChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCccC
Q 043169 280 DMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPVT 346 (421)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~t 346 (421)
.....+......+. ..-+..++|+|++++.++........|+++.+.+|-.++
T Consensus 230 ---~~~~~~~~~~~~pl-----------~~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~sl~ 282 (284)
T d1e7wa_ 230 ---PPAVWEGHRSKVPL-----------YQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYSLT 282 (284)
T ss_dssp ---CHHHHHHHHTTCTT-----------TTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred ---CHHHHHHHHhcCCC-----------CCCCCCHHHHHHHHHHHhCchhcCccCCeEEECcChhcc
Confidence 22444444444321 011456899999999999876667889999998876543
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.84 E-value=6e-20 Score=168.44 Aligned_cols=228 Identities=11% Similarity=0.067 Sum_probs=153.8
Q ss_pred CCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++||++|||||+| +||.++|+.|+++|++|++++|+++ .++..++... ......+..+|+++.+++.++++.+
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~---~~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQ---ELNSPYVYELDVSKEEHFKSLYNSVK 78 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHH---HTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHh---hCCceeEeeecccchhhHHHHHHHHH
Confidence 7899999999876 8999999999999999999999743 2222222222 2356778999999999988887654
Q ss_pred ----CCcEEEEcccccCchhhcc----CCchhhhhhHH----HHHHHHHHHHhcC-CCCeEEEEccccccCCCCCCCCCC
Q 043169 165 ----AFTHVMHLAAQAGVRYAMQ----NPHSYVHSNIA----GLVTLLEACKSAN-PQPSIVWASSSSVYGLNENVPFSE 231 (421)
Q Consensus 165 ----~~d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~----g~~~l~~~~~~~~-~~~riV~~SS~~v~g~~~~~~~~e 231 (421)
.+|++|||||......... .....+..+.. ....+.....+.. ....|+.+|+.+...
T Consensus 79 ~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~--------- 149 (274)
T d2pd4a1 79 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK--------- 149 (274)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS---------
T ss_pred HHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc---------
Confidence 6899999999865432211 22222222222 2333333333222 222566666665542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcce
Q 043169 232 ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLA 308 (421)
Q Consensus 232 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.......|+.+|.+.+.+++.++.+ +||++++|.||.+..+...................+.
T Consensus 150 ---~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 214 (274)
T d2pd4a1 150 ---YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPL------------ 214 (274)
T ss_dssp ---BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT------------
T ss_pred ---ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhhhc------------
Confidence 2234578999999999999998877 4899999999999876432211112222222222221
Q ss_pred eecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 309 RDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 309 ~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|.+++.++........|+++.+.+|.
T Consensus 215 ~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~ 249 (274)
T d2pd4a1 215 RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 249 (274)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cCCcCHHHHHHHHHHHhChhhCCCcCceEEECCCh
Confidence 12567899999999999876667889999998875
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.83 E-value=2.1e-20 Score=167.48 Aligned_cols=204 Identities=13% Similarity=0.139 Sum_probs=142.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHh-------h
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLF-------D 162 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~-------~ 162 (421)
+.+||||||+|+||.+++++|+++|++|++++|+.+.. ......+.+|+.+.+...... +
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ-------------ADSNILVDGNKNWTEQEQSILEQTASSLQ 68 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT-------------SSEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc-------------ccccceeccccCchhHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999999965421 122344556666554433322 2
Q ss_pred ccCCcEEEEcccccCc-h----hhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCC
Q 043169 163 AVAFTHVMHLAAQAGV-R----YAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTD 236 (421)
Q Consensus 163 ~~~~d~vi~~Ag~~~~-~----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~ 236 (421)
.-++|+||||||.... . ...+.++..+++|+.++.++.+++.+... .++||++||...+. +.
T Consensus 69 ~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~------------~~ 136 (235)
T d1ooea_ 69 GSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG------------PT 136 (235)
T ss_dssp TCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS------------CC
T ss_pred CCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC------------Cc
Confidence 2368999999997432 1 12234556799999999888888754311 13999999987542 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCCcceeec
Q 043169 237 QPASLYAATKKAGEEIAHTYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDF 311 (421)
Q Consensus 237 ~~~~~Y~~sK~~~e~~~~~~~~~-----~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (421)
+...+|+.||.+.+.+++.++.+ .+++++.|+||.+-.+ +.+...... ....+
T Consensus 137 ~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~----------~~~~~~~~~------------~~~~~ 194 (235)
T d1ooea_ 137 PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP----------MNRKWMPNA------------DHSSW 194 (235)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH----------HHHHHSTTC------------CGGGC
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc----------chhhhCcCC------------ccccC
Confidence 45688999999999999999866 3789999999998764 222222211 12246
Q ss_pred ccHHHHHHHHHHhhhcC-CCCCCceEEEec
Q 043169 312 TYIDDIVKGCLGSLDTS-AGPAPYRIFNLG 340 (421)
Q Consensus 312 i~v~Dva~a~~~~l~~~-~~~~~~~~~~i~ 340 (421)
+.++|+++.++..+..+ .....|..+.+.
T Consensus 195 ~~~~~va~~~~~~l~~~~~~~~tG~~i~v~ 224 (235)
T d1ooea_ 195 TPLSFISEHLLKWTTETSSRPSSGALLKIT 224 (235)
T ss_dssp BCHHHHHHHHHHHHHCGGGCCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHhcCccccCCCceEEEEE
Confidence 78999999998766543 234567777663
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.83 E-value=1.4e-19 Score=168.01 Aligned_cols=237 Identities=10% Similarity=-0.037 Sum_probs=153.0
Q ss_pred cccCCCCCEEEEEcCCC--hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh--------cCCce-EEEEcc--
Q 043169 84 QIHRSGGMSVLVTGAAG--FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL--------NNHGV-FVIEGD-- 150 (421)
Q Consensus 84 ~~~~~~~k~vlITG~sG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--------~~~~v-~~~~~D-- 150 (421)
.+.+++||++|||||+| +||.+++++|+++|++|++.+|+................ ..... ....+|
T Consensus 2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (297)
T d1d7oa_ 2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 35668999999999987 999999999999999999998832110000000000000 00001 122222
Q ss_pred c------------------CCHHHHHHHhh----cc-CCcEEEEcccccCc------hhhccCCchhhhhhHHHHHHHHH
Q 043169 151 I------------------NDAKLLAKLFD----AV-AFTHVMHLAAQAGV------RYAMQNPHSYVHSNIAGLVTLLE 201 (421)
Q Consensus 151 l------------------~d~~~~~~~~~----~~-~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~l~~ 201 (421)
+ .+...++++++ .+ ++|++|||||.... +.+.+++...+++|+.+...+++
T Consensus 82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~ 161 (297)
T d1d7oa_ 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhh
Confidence 1 12222233332 22 68999999997431 12344566889999999999999
Q ss_pred HHHhcCC-CCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCC
Q 043169 202 ACKSANP-QPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVYGPW 276 (421)
Q Consensus 202 ~~~~~~~-~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~G~~ 276 (421)
++..... .++++.+++.+... ........|+.+|.+.+.+++.+..+ +||++++|.||.+..+.
T Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~ 230 (297)
T d1d7oa_ 162 HFLPIMNPGGASISLTYIASER-----------IIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRA 230 (297)
T ss_dssp HHGGGEEEEEEEEEEECGGGTS-----------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCC
T ss_pred HHHHHhhcCCcceeeeehhhcc-----------cccccccceecccccccccccccchhccccceEEecccccccccchh
Confidence 8865432 12566666654321 11234567999999998887766543 58999999999999886
Q ss_pred CCCCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 277 GRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.........+.+...+.-|+. -+..++|+|.+++.++........|+++.+.+|-
T Consensus 231 ~~~~~~~~~~~~~~~~~~Plg------------R~~~peevA~~v~fL~S~~a~~itGq~i~vDGG~ 285 (297)
T d1d7oa_ 231 AKAIGFIDTMIEYSYNNAPIQ------------KTLTADEVGNAAAFLVSPLASAITGATIYVDNGL 285 (297)
T ss_dssp SSCCSHHHHHHHHHHHHSSSC------------CCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred hhhccCCHHHHHHHHhCCCCC------------CCCCHHHHHHHHHHHhCchhcCCcCceEEECcCH
Confidence 554444445555555443321 2567899999999999876667889999998764
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.82 E-value=1.8e-19 Score=161.91 Aligned_cols=212 Identities=18% Similarity=0.173 Sum_probs=152.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc----C
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----A 165 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----~ 165 (421)
.|++|||||+++||+++|+.|+++|++|++++|+.+ ..+....++|+++......+.... .
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~---------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 65 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE---------------GEDLIYVEGDVTREEDVRRAVARAQEEAP 65 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC---------------SSSSEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc---------------cccceEeeccccchhhhHHHHHhhhcccc
Confidence 489999999999999999999999999999999653 235677899999887766665442 4
Q ss_pred CcEEEEcccccCch--------hhccCCchhhhhhHHHHHHHHHHHHhc---------CCCCeEEEEccccccCCCCCCC
Q 043169 166 FTHVMHLAAQAGVR--------YAMQNPHSYVHSNIAGLVTLLEACKSA---------NPQPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~--------~~~~~~~~~~~~N~~g~~~l~~~~~~~---------~~~~riV~~SS~~v~g~~~~~~ 228 (421)
.+.++++++..... ...+..+..+++|+.+...+++.+... +..++||++||...+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~------ 139 (241)
T d1uaya_ 66 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE------ 139 (241)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH------
T ss_pred ccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc------
Confidence 56677777654321 112234467899999988877766322 1124899999987542
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEecCCCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHV 305 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (421)
+.+....|+.+|.+.+.+++.++.+ +||+|++|.||.|..+...... ......+....+..
T Consensus 140 ------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~--~~~~~~~~~~~~~~-------- 203 (241)
T d1uaya_ 140 ------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLP--EKAKASLAAQVPFP-------- 203 (241)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSC--HHHHHHHHTTCCSS--------
T ss_pred ------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhh--hhHHHHHHhcCCCC--------
Confidence 2245678999999999999999987 5899999999999876322111 12233333333210
Q ss_pred cceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCC
Q 043169 306 DLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 306 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.-+..++|+|++++.++++. ...|+++.+.+|-
T Consensus 204 ---~R~g~pedvA~~v~fL~s~~--~iTG~~i~VDGG~ 236 (241)
T d1uaya_ 204 ---PRLGRPEEYAALVLHILENP--MLNGEVVRLDGAL 236 (241)
T ss_dssp ---CSCCCHHHHHHHHHHHHHCT--TCCSCEEEESTTC
T ss_pred ---CCCcCHHHHHHHHHHHHhCC--CCCCCEEEECCcc
Confidence 11456899999999998743 6889999998764
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.81 E-value=2.6e-19 Score=163.58 Aligned_cols=230 Identities=13% Similarity=0.028 Sum_probs=152.9
Q ss_pred CCCCEEEEEcC--CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-
Q 043169 88 SGGMSVLVTGA--AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV- 164 (421)
Q Consensus 88 ~~~k~vlITG~--sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~- 164 (421)
++||++||||| +.+||.++|++|+++|++|++.+|+..+ . ..........+...+++|+++.+++.++++.+
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~----~-~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~ 78 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR----L-IQRITDRLPAKAPLLELDVQNEEHLASLAGRVT 78 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHH----H-HHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHH----H-HHHHHHHcCCceeeEeeecccccccccccchhh
Confidence 78999999995 4589999999999999999999986531 1 11122223456788999999998777766543
Q ss_pred -------CCcEEEEcccccCchhh---------ccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccCCCCCCC
Q 043169 165 -------AFTHVMHLAAQAGVRYA---------MQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYGLNENVP 228 (421)
Q Consensus 165 -------~~d~vi~~Ag~~~~~~~---------~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g~~~~~~ 228 (421)
.+|++|||||....... .......+.+|........+.+........++.++|.....
T Consensus 79 ~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~------ 152 (268)
T d2h7ma1 79 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR------ 152 (268)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS------
T ss_pred hccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc------
Confidence 47999999997643211 11222346666666666666665433222445555444321
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC------CCCC----hHHHHHHHHHcCCC
Q 043169 229 FSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWG------RPDM----AYFSFTRNILQGKP 295 (421)
Q Consensus 229 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~------~~~~----~~~~~~~~~~~~~~ 295 (421)
..+....|+.+|.+.+.+++.++.+ +||+|++|.||.|..+.. .... ....+...+.+.-|
T Consensus 153 ------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 226 (268)
T d2h7ma1 153 ------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAP 226 (268)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHCT
T ss_pred ------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcCC
Confidence 2234578999999999999999987 489999999999876411 0000 11112222222222
Q ss_pred eEEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCcc
Q 043169 296 ITVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSPV 345 (421)
Q Consensus 296 ~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~~ 345 (421)
. .+-+..++|+|++++.++........|+++.+.+|..+
T Consensus 227 l-----------~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~~~ 265 (268)
T d2h7ma1 227 I-----------GWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHT 265 (268)
T ss_dssp T-----------CCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGGG
T ss_pred C-----------CCCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCccc
Confidence 1 11255679999999999976656788999999887643
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.81 E-value=3.1e-19 Score=162.79 Aligned_cols=225 Identities=12% Similarity=0.055 Sum_probs=148.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC----HHHHHHHhhcc---
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND----AKLLAKLFDAV--- 164 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~~~~~~~~~--- 164 (421)
++|||||+++||.+++++|+++|++|++++|+.+...+..... ..........+...|+.+ .+.+.++++.+
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAE-LNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA 81 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-HHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHH-HHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999764322211111 112234566667766653 44555554432
Q ss_pred --CCcEEEEcccccCchhhc---------------cCCchhhhhhHHHHHHHHHHHHhc--------CCCCeEEEEcccc
Q 043169 165 --AFTHVMHLAAQAGVRYAM---------------QNPHSYVHSNIAGLVTLLEACKSA--------NPQPSIVWASSSS 219 (421)
Q Consensus 165 --~~d~vi~~Ag~~~~~~~~---------------~~~~~~~~~N~~g~~~l~~~~~~~--------~~~~riV~~SS~~ 219 (421)
++|++|||||+..+.... ......+..|+.+........... .....++.+|+..
T Consensus 82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (266)
T d1mxha_ 82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM 161 (266)
T ss_dssp HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence 689999999986432110 011123455555555444444321 1122667777765
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCe
Q 043169 220 VYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPI 296 (421)
Q Consensus 220 v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 296 (421)
... ..+....|+.||.+.+.+++.++.+ +||+++.|.||.+..+...+ ......+.+.-+.
T Consensus 162 ~~~------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~----~~~~~~~~~~~pl 225 (266)
T d1mxha_ 162 TDL------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP----QETQEEYRRKVPL 225 (266)
T ss_dssp GGS------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC----HHHHHHHHTTCTT
T ss_pred ccc------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC----HHHHHHHHhcCCC
Confidence 532 2345688999999999999999887 48999999999998764332 2344444443321
Q ss_pred EEEecCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCCCc
Q 043169 297 TVYRGKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNTSP 344 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~~~ 344 (421)
+ +-+..++|+|.+++.++........|+++.+.+|-.
T Consensus 226 ------~-----r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~~ 262 (266)
T d1mxha_ 226 ------G-----QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLI 262 (266)
T ss_dssp ------T-----SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ------C-----CCCCCHHHHHHHHHHHhCchhCCccCCeEEECccHh
Confidence 0 123568999999999998766678899999988753
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.78 E-value=3.5e-19 Score=167.49 Aligned_cols=232 Identities=11% Similarity=-0.022 Sum_probs=148.6
Q ss_pred CCCEEEEEc--CCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh----h-----cCCceEEEEc--------
Q 043169 89 GGMSVLVTG--AAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL----L-----NNHGVFVIEG-------- 149 (421)
Q Consensus 89 ~~k~vlITG--~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~-----~~~~v~~~~~-------- 149 (421)
++|.+|||| ++.+||.++++.|+++|++|++.++................ . .........+
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 368999999 55799999999999999999998874321100000000000 0 0011123333
Q ss_pred ------------ccCCHHHHHHHhhcc-----CCcEEEEcccccCc------hhhccCCchhhhhhHHHHHHHHHHHHhc
Q 043169 150 ------------DINDAKLLAKLFDAV-----AFTHVMHLAAQAGV------RYAMQNPHSYVHSNIAGLVTLLEACKSA 206 (421)
Q Consensus 150 ------------Dl~d~~~~~~~~~~~-----~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 206 (421)
|+++.++++++++.+ ++|++|||||.... +.+.+++...+++|+.++..+++++.+.
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 444544455554433 68999999997542 1234456788999999999998888654
Q ss_pred C-CCCeEEEEccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCC---
Q 043169 207 N-PQPSIVWASSSSVYGLNENVPFSEADRTDQPASLYAATKKAGEEIAHTYNHI----YGLSITGLRFFTVYGPWGR--- 278 (421)
Q Consensus 207 ~-~~~riV~~SS~~v~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~vrp~~v~G~~~~--- 278 (421)
- ..++||.+||.+.... .+ .....|+.+|.+.+.+++.++.+ +||+|++|.||.|-.+-..
T Consensus 161 m~~~GsIv~iss~~~~~~----------~p-~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T~a~~~i~ 229 (329)
T d1uh5a_ 161 MKPQSSIISLTYHASQKV----------VP-GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAIN 229 (329)
T ss_dssp EEEEEEEEEEECGGGTSC----------CT-TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCTTGGGCC
T ss_pred cccccccccceeehhccc----------cc-ccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccchhhhccc
Confidence 2 1238999998765321 11 22467999999999999887754 5899999999988652100
Q ss_pred ----------------------------------------CCChHHHHHHHHHcCCCeEEEecCCCCcceeecccHHHHH
Q 043169 279 ----------------------------------------PDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIV 318 (421)
Q Consensus 279 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 318 (421)
...........+.+..| ..-+..++|+|
T Consensus 230 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P------------l~R~~~pedvA 297 (329)
T d1uh5a_ 230 KLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAP------------LRQKLLSTDIG 297 (329)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHSS------------SCSCCCHHHHH
T ss_pred chhhhhhhhhhhhhccccccccccccccccccchhhhhhhcccchHHHHHHHhccCC------------CCCCcCHHHHH
Confidence 00111122222222222 12256789999
Q ss_pred HHHHHhhhcCCCCCCceEEEecCCC
Q 043169 319 KGCLGSLDTSAGPAPYRIFNLGNTS 343 (421)
Q Consensus 319 ~a~~~~l~~~~~~~~~~~~~i~~~~ 343 (421)
.+++.++....+...|+++.+.+|-
T Consensus 298 ~~v~fLaSd~s~~iTGq~i~VDGG~ 322 (329)
T d1uh5a_ 298 SVASFLLSRESRAITGQTIYVDNGL 322 (329)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHhCchhCCccCCeEEECCCc
Confidence 9999999876667899999998774
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.74 E-value=6.7e-18 Score=153.02 Aligned_cols=218 Identities=15% Similarity=0.108 Sum_probs=134.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc-----
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV----- 164 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~----- 164 (421)
+|.||||||+++||.+++++|+++|++|++++|+... ...|+.+.+.......+.
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~--------------------~~~d~~~~~~~~~~~~~~~~~~~ 60 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE--------------------VIADLSTAEGRKQAIADVLAKCS 60 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS--------------------EECCTTSHHHHHHHHHHHHTTCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH--------------------HHHHhcCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999985431 245777776655544322
Q ss_pred -CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHH----HhcCCCCeEEEEccccccCCC-CCCCCCC-------
Q 043169 165 -AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEAC----KSANPQPSIVWASSSSVYGLN-ENVPFSE------- 231 (421)
Q Consensus 165 -~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~----~~~~~~~riV~~SS~~v~g~~-~~~~~~e------- 231 (421)
.+|++|||||+... .+.......+|..+...+.+.. .+.. ......+++....... ...+...
T Consensus 61 ~~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 136 (257)
T d1fjha_ 61 KGMDGLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGH-QPAAVVISSVASAHLAFDKNPLALALEAGEE 136 (257)
T ss_dssp TCCSEEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGSSCGGGCTTHHHHHHTCH
T ss_pred CCCcEEEEcCCCCCc---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCcceeeeeccccchhhhhhhhhhhccCCcE
Confidence 58999999997542 2344566778888877766654 2333 2255555554322110 0000000
Q ss_pred --------CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCChHHHHHHHHHcCCCeEEEe
Q 043169 232 --------ADRTDQPASLYAATKKAGEEIAHTYNHI---YGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR 300 (421)
Q Consensus 232 --------~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (421)
.........+|+.||.+.+.+++.++.+ +||+|++|.||.+-+|.......-......+.+..
T Consensus 137 ~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~------ 210 (257)
T d1fjha_ 137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFV------ 210 (257)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------CC------
T ss_pred EEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHHHHhcC------
Confidence 0001012246999999999999999876 48999999999998763221100001111111110
Q ss_pred cCCCCcceeecccHHHHHHHHHHhhhcCCCCCCceEEEecCC
Q 043169 301 GKNHVDLARDFTYIDDIVKGCLGSLDTSAGPAPYRIFNLGNT 342 (421)
Q Consensus 301 ~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~~~i~~~ 342 (421)
....-+..++|+|.+++.++........|+++.+.+|
T Consensus 211 -----~PlgR~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 211 -----PPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp -----CSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCchhCCccCceEEeCCC
Confidence 0111256789999999999987666788999999776
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.46 E-value=1.6e-14 Score=124.24 Aligned_cols=109 Identities=15% Similarity=0.037 Sum_probs=80.9
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
..+++||+|+||||+|+||..+++.|+++|++|++++|+.++.+...+... ...++.+..+|++|.+++++++.++
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~i 93 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN----KRFKVNVTAAETADDASRAEAVKGA 93 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH----HHHTCCCEEEECCSHHHHHHHTTTC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH----hccchhhhhhhcccHHHHHHHhcCc
Confidence 345899999999999999999999999999999999997654333322222 2245677899999999999999877
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHH
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTL 199 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l 199 (421)
|+||||||........++++..+++|+.+..+.
T Consensus 94 --Dilin~Ag~g~~~~~~e~~~~~~~~nv~~~~~~ 126 (191)
T d1luaa1 94 --HFVFTAGAIGLELLPQAAWQNESSIEIVADYNA 126 (191)
T ss_dssp --SEEEECCCTTCCCBCHHHHHTCTTCCEEEECCC
T ss_pred --CeeeecCccccccCCHHHHHhhhcceeehhHhh
Confidence 999999997433333344445555555544333
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.28 E-value=1.8e-06 Score=69.22 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=73.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+.|+|.|.|+ |.+|..++..|+.+| .+|+++|+++++.+.....................|.. .++++
T Consensus 3 ~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-------~~~~a- 73 (146)
T d1ez4a1 3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-------DCKDA- 73 (146)
T ss_dssp TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-------GGTTC-
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-------Hhccc-
Confidence 35679999996 999999999999988 58999998543221111111111112233445555542 34556
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|+||.+||.... ...+....+..|..-...+.+.+++.+.+..++.+|
T Consensus 74 -divvitag~~~~--~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 74 -DLVVITAGAPQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp -SEEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred -cEEEEecccccC--CCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 999999996432 234456778899999999999999998875555544
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.25 E-value=3.9e-06 Score=66.97 Aligned_cols=115 Identities=21% Similarity=0.177 Sum_probs=78.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|.|+||+|.+|++++..|+.+|. ++++++.++ .... ..+......+..... .....+..+.++++ |+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~-----~~~~-a~Dl~~~~~~~~~~~-~~~~~~~~~~~~~a--Div 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-----TPGV-AADLSHIETRATVKG-YLGPEQLPDCLKGC--DVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-----HHHH-HHHHTTSSSSCEEEE-EESGGGHHHHHTTC--SEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc-----cchh-hHHHhhhhhhcCCCe-EEcCCChHHHhCCC--CEE
Confidence 689999999999999999999884 788888743 1111 111111111111121 12234455677777 999
Q ss_pred EEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 170 MHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 170 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|..||.... ...+....++.|..-.+.+++.++++++...|+.+|.
T Consensus 73 Vitag~~~~--~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN 118 (144)
T d1mlda1 73 VIPAGVPRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (144)
T ss_dssp EECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EECCCcCCC--CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 999996432 2345667899999999999999999988756666554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.13 E-value=1.3e-05 Score=63.00 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=55.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHh-hccCCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLF-DAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~-~~~~~d~v 169 (421)
|+|+|.|+ |.+|+.+++.|.++|++|++++.+.+. .+... ...++.++.+|.+|++.++++- +++ |.+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~----~~~~~----~~~~~~vi~Gd~~~~~~l~~~~i~~a--~~v 69 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDI----CKKAS----AEIDALVINGDCTKIKTLEDAGIEDA--DMY 69 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHH----HHCSSEEEESCTTSHHHHHHTTTTTC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhh----hhhhh----hhhhhhhccCcccchhhhhhcChhhh--hhh
Confidence 78999998 999999999999999999999984321 11111 1236789999999999998873 444 877
Q ss_pred EEcc
Q 043169 170 MHLA 173 (421)
Q Consensus 170 i~~A 173 (421)
+-+.
T Consensus 70 v~~t 73 (132)
T d1lssa_ 70 IAVT 73 (132)
T ss_dssp EECC
T ss_pred cccC
Confidence 7653
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.06 E-value=1.3e-05 Score=64.24 Aligned_cols=117 Identities=23% Similarity=0.241 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
..+++|.|.|+ |.+|++++..|+.+|. +++++|++++..+......... ......+.+...|. +.++++
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~da 75 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDCRDA 75 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGTTTC
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHhccc
Confidence 46789999997 9999999999999884 7999998553322111111111 11123444444443 335566
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|+||.+||.... ........+..|..-...+.+.+++.++...++.+|
T Consensus 76 --Dvvvitag~~~~--~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 76 --DLVVICAGANQK--PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp --SEEEECCSCCCC--TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred --eeEEEecccccc--cCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 999999997432 234556788899999999999999988775666655
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=1.8e-05 Score=63.04 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=74.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHH-CC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKK-RG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~-~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|.|+|++|.+|++++-.|+. .+ .++.+++..+ .. .. ......+...........+-.+.+ .+++. |
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~-~g-~a~Dl~h~~~~~~~~~~~~~~~~~----~~~~a--D 71 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VT-PG-VAVDLSHIPTAVKIKGFSGEDATP----ALEGA--D 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-TH-HH-HHHHHHTSCSSCEEEEECSSCCHH----HHTTC--S
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cc-hh-HHHHHHCCccccCCcEEEcCCCcc----ccCCC--C
Confidence 6899999999999999988864 34 6899998632 11 11 111121211111111122233333 45566 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+||.+||.... ...+....+..|..-.+.+.+.+.+.++...+|.+|.
T Consensus 72 vvvitaG~~~k--~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 72 VVLISAGVRRK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp EEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEEECCCccCC--CCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 99999997432 2345567899999999999999999987756666664
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.95 E-value=5.7e-06 Score=66.03 Aligned_cols=115 Identities=13% Similarity=0.061 Sum_probs=73.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHH-HHHHHh---hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLK-KARKAL---LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~-~~~~~~---~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
|+|.|.||+|.+|+.++..|+.+| .++.+++++.+.. .... .....+ .....++....--.|. +.++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~-~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~a 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSIN-KLEGLREDIYDALAGTRSDANIYVESDENL----RIIDES 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHH-HHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTTC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhH-hhhcccccchhcccccccCCccccCCcchH----HHhccc
Confidence 689999999999999999999998 4899999853211 0010 011111 1122333321111122 245556
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEE
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWA 215 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~ 215 (421)
|+||-+||.... ...+....++.|..-...+.+.+.+.+.. .++.+
T Consensus 76 --DvVVitAG~~~~--~g~sR~dl~~~Na~iv~~i~~~i~~~~~~-~iivV 121 (145)
T d1hyea1 76 --DVVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEICDT-KIFVI 121 (145)
T ss_dssp --SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCCC-EEEEC
T ss_pred --eEEEEecccccC--CCCChhhhhhhhHHHHHHHHHHHhccCCC-eEEEE
Confidence 999999997432 22345578899999999999999888764 55544
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.92 E-value=3.1e-05 Score=61.47 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=72.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|.|.|+ |.+|+.++-.|+.+|. +++++|++.+..+....................+| + +.+++. |+
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~----~~~~~a--di 71 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---Y----SDVKDC--DV 71 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---G----GGGTTC--SE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---H----HHhCCC--ce
Confidence 46788897 9999999999999984 89999998876544332221111111223333222 2 235556 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
||-.||.... ...+....+..|..-...+.+.+++.+++..++.+|
T Consensus 72 vvitag~~~~--~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 72 IVVTAGANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp EEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EEEecccccC--cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 9999996432 234455788999999999999999988765565554
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.87 E-value=4.4e-05 Score=61.44 Aligned_cols=121 Identities=14% Similarity=0.090 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+.++|.|.|+ |.+|+.++..|+..+ .+++++|.+++..+.......... ........... .+ .++.+++.
T Consensus 5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~---~~~~~~~a- 77 (154)
T d1pzga1 5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE--YS---YEAALTGA- 77 (154)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE--CS---HHHHHTTC-
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc--Cc---hhhhhcCC-
Confidence 46678999997 999999999888888 489999886653332222111111 11111111111 12 23456667
Q ss_pred CcEEEEcccccCchh---hccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 166 FTHVMHLAAQAGVRY---AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~---~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|+||-.||....+. ...+....+..|..-...+++.+++.+....|+.+|
T Consensus 78 -diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 78 -DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp -SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred -CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99999999754321 122456778899999999999999998875555555
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.87 E-value=3.3e-05 Score=61.16 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=74.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
|+|.|.|+ |.+|+.++..|+.++ .+++++|+++++.......................|. +.+++. |+
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~-------~~~~~a--di 70 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY-------ADLKGS--DV 70 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG-------GGGTTC--SE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH-------HHhcCC--CE
Confidence 67889997 999999999999887 5899999865332211111111111123444444432 235666 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
||-+||.... ........+..|..-...+.+.+++.++...++.+|
T Consensus 71 vvitag~~~~--~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 71 VIVAAGVPQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp EEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEecccccC--CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 9999997432 123345678889988999999999988775555544
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.86 E-value=2.8e-05 Score=64.65 Aligned_cols=106 Identities=26% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.|.+|||+||+|++|...++.....|++|++++++.+ +....+.. .....+..-|-...+.+.+......+|+
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~------~~~~~~~~-Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~ 101 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE------KIAYLKQI-GFDAAFNYKTVNSLEEALKKASPDGYDC 101 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH------HHHHHHHT-TCSEEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHH------HHHHHHhh-hhhhhcccccccHHHHHHHHhhcCCCce
Confidence 6889999999999999999999999999999998432 11111111 1222233344445556666655556899
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
|+++.|... ....+++++..| +++.+.....|+
T Consensus 102 v~D~vG~~~------------------~~~~~~~l~~~G---~~v~~G~~~~~~ 134 (182)
T d1v3va2 102 YFDNVGGEF------------------LNTVLSQMKDFG---KIAICGAISVYN 134 (182)
T ss_dssp EEESSCHHH------------------HHHHGGGEEEEE---EEEECCCGGGTT
T ss_pred eEEecCchh------------------hhhhhhhccCCC---eEEeecceeecc
Confidence 999987310 123455555555 888877666654
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.81 E-value=4.6e-05 Score=60.29 Aligned_cols=113 Identities=19% Similarity=0.082 Sum_probs=75.4
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhH-HHHHHHh--hcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSL-KKARKAL--LNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
+|.|+||+|.+|++++..|+.+|. ++++++...... ... ......+ .......+...|.. .++++
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~-~~~g~a~Dl~~~~~~~~~~~i~~~~~~-------~~~~a-- 71 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKED-DTVGQAADTNHGIAYDSNTRVRQGGYE-------DTAGS-- 71 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHH-HHHHHHHHHHHHHTTTCCCEEEECCGG-------GGTTC--
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCccc-ccceeecchhhcccccCCceEeeCCHH-------Hhhhc--
Confidence 689999999999999999999984 788888632110 111 0111111 12334455445432 24556
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|+||-.||.... ...+..+.++.|..-.+.+.+.+++.+.+..++.+|
T Consensus 72 DiVvitaG~~~~--~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 72 DVVVITAGIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred CEEEEecccccc--cCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 999999996432 223456789999999999999999998775666555
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.81 E-value=0.00012 Score=57.15 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=56.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHH-hhccCCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKL-FDAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~-~~~~~~d~v 169 (421)
|+++|.|+ |-+|+++++.|.++|++|++++.+. ...+........++.+|.++++.+.++ ++++ |.|
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~---------~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a--~~v 68 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINE---------EKVNAYASYATHAVIANATEENELLSLGIRNF--EYV 68 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCH---------HHHHHTTTTCSEEEECCTTCTTHHHHHTGGGC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcH---------HHHHHHHHhCCcceeeecccchhhhccCCccc--cEE
Confidence 56888887 9999999999999999999999743 222333456677889999999998887 5555 877
Q ss_pred EEccc
Q 043169 170 MHLAA 174 (421)
Q Consensus 170 i~~Ag 174 (421)
|-..+
T Consensus 69 i~~~~ 73 (134)
T d2hmva1 69 IVAIG 73 (134)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 76543
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.81 E-value=6.3e-05 Score=61.84 Aligned_cols=74 Identities=26% Similarity=0.162 Sum_probs=54.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
+|+|+|.|| |.+|+++|+.|+++|++|++++|+.++ ...-...-........+..+.....+.+... |.+
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~-------a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~ 71 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLES-------AKKLSAGVQHSTPISLDVNDDAALDAEVAKH--DLV 71 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHH-------HHHHHTTCTTEEEEECCTTCHHHHHHHHTTS--SEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHH-------HHHHHhcccccccccccccchhhhHhhhhcc--cee
Confidence 589999987 999999999999999999999995431 1111112234555566777878888888766 877
Q ss_pred EEcc
Q 043169 170 MHLA 173 (421)
Q Consensus 170 i~~A 173 (421)
+...
T Consensus 72 i~~~ 75 (182)
T d1e5qa1 72 ISLI 75 (182)
T ss_dssp EECS
T ss_pred Eeec
Confidence 7654
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.77 E-value=5.4e-06 Score=69.66 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYD 128 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 128 (421)
|+|.|+||+|.+|++|++.|++.|++|++.+|+.++.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~ 38 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAE 38 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 68999999999999999999999999999999665433
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.69 E-value=0.00018 Score=57.99 Aligned_cols=118 Identities=13% Similarity=0.131 Sum_probs=77.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
...++|-|.|+ |.+|+.++..|+.+|. +++++|++.+............. ...........|.. .+++.
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~-------~~~~a 89 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYS-------VTANS 89 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGG-------GGTTC
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchh-------hcccc
Confidence 45678999997 9999999999999985 89999985432211111111111 11122222233332 25556
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||..||.... ...+....+..|..-...+.+.+++.+.+.-+|.+|-
T Consensus 90 --diVVitAg~~~~--~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN 138 (160)
T d1i0za1 90 --KIVVVTAGVRQQ--EGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN 138 (160)
T ss_dssp --SEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred --cEEEEecCCccc--cCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999999997532 2244567888999999999999999887756666663
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.69 E-value=4.2e-05 Score=60.75 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=74.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHH-HhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARK-ALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|.|+|+ |.+|+.++..|+.+| .+++++|++++..+........ .........+... .|. +.++++ |
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~----~~~~da--d 71 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY----ADTANS--D 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG----GGGTTC--S
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCH----HHhcCC--e
Confidence 67899997 999999999999998 5899999876533222111111 0111223333322 222 235666 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
+||-+||.... ...+....+..|..-...+.+.+.+.++...++.+|
T Consensus 72 vvvitag~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 72 IVIITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp EEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred EEEEEEecCCC--CCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 99999997432 123345678889988999999999888765555544
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=9e-05 Score=61.44 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=64.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+++|+|+|.|+ |+.|++++..|.+.|. +++++.|+.+..+..... ...............|+.+.+.+.+.+...
T Consensus 15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 91 (182)
T d1vi2a1 15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF-AQRVNENTDCVVTVTDLADQQAFAEALASA- 91 (182)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH-HHHHHHHSSCEEEEEETTCHHHHHHHHHTC-
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHH-HHHHHhhcCcceEeeecccccchhhhhccc-
Confidence 368899999997 9999999999999996 688899977655443332 112222234556678999999988888777
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
|+|||+...
T Consensus 92 -diiIN~Tp~ 100 (182)
T d1vi2a1 92 -DILTNGTKV 100 (182)
T ss_dssp -SEEEECSST
T ss_pred -ceeccccCC
Confidence 999999754
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.67 E-value=2.5e-05 Score=64.46 Aligned_cols=100 Identities=22% Similarity=0.200 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-HHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-AKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~~d 167 (421)
.|.+|||+||+|++|...++.+...|++|++.+++.++.+.. ....... ++ |-.+ .++..+.....++|
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~------~~lGa~~--vi--~~~~~~~~~~~~~~~~gvD 100 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL------RVLGAKE--VL--AREDVMAERIRPLDKQRWA 100 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH------HHTTCSE--EE--ECC---------CCSCCEE
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHH------Hhcccce--ee--ecchhHHHHHHHhhccCcC
Confidence 578999999999999999999999999999999866532211 1111121 11 2221 12223333444689
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
+||++.|-.. ....++.++..| |+|.+....
T Consensus 101 ~vid~vgg~~------------------~~~~l~~l~~~G---riv~~G~~~ 131 (176)
T d1xa0a2 101 AAVDPVGGRT------------------LATVLSRMRYGG---AVAVSGLTG 131 (176)
T ss_dssp EEEECSTTTT------------------HHHHHHTEEEEE---EEEECSCCS
T ss_pred EEEEcCCchh------------------HHHHHHHhCCCc---eEEEeeccc
Confidence 9999988432 224555555655 899877754
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.64 E-value=0.00015 Score=57.64 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=73.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
|+|.|.|+ |.+|+.++-.|+.+| .+++++|+++++.+.......... ...........|. +.+++. |
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-------~~l~~a--d 71 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-------AALADA--D 71 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-------GGGTTC--S
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-------HHhccc--c
Confidence 68899996 999999999999988 489999985543221111111111 1122334444443 234556 9
Q ss_pred EEEEcccccCchh--hccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 168 HVMHLAAQAGVRY--AMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 168 ~vi~~Ag~~~~~~--~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
+||-+||...... ...+....++.|..-...+.+.+++.++...+|.+|
T Consensus 72 iVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999999643211 112234578889999999999999998775555554
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.62 E-value=0.00012 Score=60.13 Aligned_cols=118 Identities=13% Similarity=0.060 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC---C----cEEEEeCCCCCCChhHHHHHH--HhhcCCceEEEEcccCCHHHHHH
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG---D----GVVGLDNFNNYYDPSLKKARK--ALLNNHGVFVIEGDINDAKLLAK 159 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g---~----~V~~~~r~~~~~~~~~~~~~~--~~~~~~~v~~~~~Dl~d~~~~~~ 159 (421)
+..+|.||||+|.||++++..|+..+ . .+.+++... .......... .....+.+.-+..- ++ ..+
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~--~~~~l~g~~mdl~d~a~~~~~~~~~~-~~---~~~ 96 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER--SFQALEGVAMELEDSLYPLLREVSIG-ID---PYE 96 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG--GHHHHHHHHHHHHTTTCTTEEEEEEE-SC---HHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc--ccchhcchhhhhcccccccccCcccc-cc---chh
Confidence 45589999999999999999998753 1 344455422 1111111111 11222222222211 12 346
Q ss_pred HhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEc
Q 043169 160 LFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWAS 216 (421)
Q Consensus 160 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~S 216 (421)
.+++. |+||-.||... .......+.+..|..-...+.+.+.+... ..+|+.+|
T Consensus 97 ~~~~a--DvVvi~ag~~r--kpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 97 VFEDV--DWALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp HTTTC--SEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred hccCC--ceEEEeeccCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 67777 99999999743 22345567889999999999999988654 32555554
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.61 E-value=0.00018 Score=56.90 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=73.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.+|.|.|+ |.+|++++..|+.+|. ++++++++++..+.................+...+ +. +.+++. |+
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~~----~~~~da--Dv 72 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--DP----EICRDA--DM 72 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--CG----GGGTTC--SE
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--CH----HHhhCC--cE
Confidence 46889997 9999999999999984 89999985432211111111111111222232221 21 235555 99
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
||-.||.... ...+..+.+..|..-.+.+.+.+++.+....++.+|
T Consensus 73 VVitaG~~~~--~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 73 VVITAGPRQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp EEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEecccccC--CCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 9999997432 223445788999999999999999998765555555
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00011 Score=60.28 Aligned_cols=98 Identities=20% Similarity=0.213 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH---HHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK---LLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~~~~~~~~~~ 165 (421)
.|.+|||+||+|.+|...++.+...|++|++++++.+ ..+...+ .... .+ .|.++.+ .+.+......
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~-----~~~~~~~-~Ga~--~v--i~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE-----GQKIVLQ-NGAH--EV--FNHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHH-TTCS--EE--EETTSTTHHHHHHHHHCTTC
T ss_pred CCCEEEEEeccccccccccccccccCccccccccccc-----ccccccc-cCcc--cc--cccccccHHHHhhhhhccCC
Confidence 6789999999999999999999999999999997421 1111111 1111 22 2555443 3344444446
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+|+++++.|-. .....++.+++.| ++|.+..
T Consensus 98 ~d~v~d~~g~~------------------~~~~~~~~l~~~G---~iv~~G~ 128 (174)
T d1yb5a2 98 IDIIIEMLANV------------------NLSKDLSLLSHGG---RVIVVGS 128 (174)
T ss_dssp EEEEEESCHHH------------------HHHHHHHHEEEEE---EEEECCC
T ss_pred ceEEeecccHH------------------HHHHHHhccCCCC---EEEEEec
Confidence 89999998731 0234556666655 8887753
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.60 E-value=0.00012 Score=58.99 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++..+|.|.|+ |.+|..++..|+.+|. +++++|++.+............. ...........|. +.+++.
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-------~~~~~a 88 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-------NVSANS 88 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-------GGGTTE
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-------hhhccc
Confidence 34457999996 9999999999999984 79999875432111111111100 1112222333333 234555
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
|+||..||....+ ..+....++.|..-...+.+.+++.+....++.+|.
T Consensus 89 --divvitag~~~~~--~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 89 --KLVIITAGARMVS--GQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp --EEEEECCSCCCCT--TTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred --cEEEEecccccCC--CCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 9999999974322 345557788999999999999998888766666654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.57 E-value=0.00012 Score=58.84 Aligned_cols=119 Identities=14% Similarity=0.024 Sum_probs=71.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC----c-E--EEEeCCCCCCChhHHHHHH--HhhcCCceEEEEcccCCHHHHHH
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD----G-V--VGLDNFNNYYDPSLKKARK--ALLNNHGVFVIEGDINDAKLLAK 159 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~----~-V--~~~~r~~~~~~~~~~~~~~--~~~~~~~v~~~~~Dl~d~~~~~~ 159 (421)
+.++|.|+||+|++|++++..|+..+. . + .+++- ............ .......+..+...-. ..+
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI--PQAMKALEGVVMELEDCAFPLLAGLEATDD----PKV 76 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC--GGGHHHHHHHHHHHHTTTCTTEEEEEEESC----HHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc--ccchhhHcCchhhhhccccccccccccCCc----hhh
Confidence 567999999999999999999988753 1 2 22221 111111111111 1122233333333322 235
Q ss_pred HhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC-CCeEEEEcc
Q 043169 160 LFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP-QPSIVWASS 217 (421)
Q Consensus 160 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~riV~~SS 217 (421)
.+++. |+||-+||.... ...+..+.+..|..-...+.+.+.+... ...|+.+|.
T Consensus 77 ~~~~a--dvViitaG~~~~--pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 77 AFKDA--DYALLVGAAPRK--AGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp HTTTC--SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred hcccc--cEEEeecCcCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 67777 999999997532 2234567888999999999999988643 325555553
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.52 E-value=0.00012 Score=60.62 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~~ 165 (421)
.|.+|||+||+|.+|...++.+...|.+|++++++++ +.+...+.+...+ .|..+. +.+.+......
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~---------~~~~l~~~Ga~~v-i~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA---------KREMLSRLGVEYV-GDSRSVDFADEILELTDGYG 94 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH---------HHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTCC
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccc---------ccccccccccccc-ccCCccCHHHHHHHHhCCCC
Confidence 5789999999999999999999888999999987432 1111222222221 244443 34444444446
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
+|++|++.|.. .....+++++..| ++|.++...
T Consensus 95 ~d~v~d~~g~~------------------~~~~~~~~l~~~G---~~v~~G~~~ 127 (183)
T d1pqwa_ 95 VDVVLNSLAGE------------------AIQRGVQILAPGG---RFIELGKKD 127 (183)
T ss_dssp EEEEEECCCTH------------------HHHHHHHTEEEEE---EEEECSCGG
T ss_pred EEEEEecccch------------------HHHHHHHHhcCCC---EEEEEccCC
Confidence 79999998731 0223455566555 899876544
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00014 Score=54.73 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=57.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
..+.+|.|.|| |.+|+.++....+.|++|++++.+.+.. + ..-.-.++.+|..|.+.+.++...+++|
T Consensus 9 ~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~P--A---------~~va~~~i~~~~~d~~~l~~~~~~~~~D 76 (111)
T d1kjqa2 9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAP--A---------MHVAHRSHVINMLDGDALRRVVELEKPH 76 (111)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCG--G---------GGGSSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCc--h---------hhcCCeEEECCCCCHHHHHHHHHhhCCc
Confidence 45678999996 9999999999999999999999855421 1 0112357889999999999999877778
Q ss_pred EEEE
Q 043169 168 HVMH 171 (421)
Q Consensus 168 ~vi~ 171 (421)
+|-.
T Consensus 77 viT~ 80 (111)
T d1kjqa2 77 YIVP 80 (111)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.48 E-value=0.0006 Score=55.44 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc---c
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA---V 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~---~ 164 (421)
..+.+|+|+| +|.||...++.+...|++|++++++.+ +.+ ..+...........-.-.+.+.+.+.+.. .
T Consensus 25 ~~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~-----r~~-~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 25 QLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPR-----RLE-VAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 97 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHH-----HHH-HHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCEEEEEc-ccccchhhHhhHhhhcccccccchHHH-----HHH-HHHHcCCcEEEeccccccccchhhhhhhccccc
Confidence 3577999997 699999999999999999999998432 111 11111111111122222345555554443 2
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
.+|+||.++|... .....++.++..| +++.++
T Consensus 98 g~D~vid~~g~~~-----------------~~~~a~~~~~~~G---~iv~~G 129 (170)
T d1e3ja2 98 LPNVTIDCSGNEK-----------------CITIGINITRTGG---TLMLVG 129 (170)
T ss_dssp CCSEEEECSCCHH-----------------HHHHHHHHSCTTC---EEEECS
T ss_pred CCceeeecCCChH-----------------HHHHHHHHHhcCC---ceEEEe
Confidence 5799999998421 1234455666555 888776
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.47 E-value=0.00027 Score=55.79 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=69.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEE-EcccCCHHHHHHHhhccCCc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVI-EGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~-~~Dl~d~~~~~~~~~~~~~d 167 (421)
++|-|.|+ |.+|+.++-.|+.++ .++++++.+++............ ........+. ..|.. .+++. |
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-------~~~~a--d 71 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-------DTANS--D 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-------GGTTC--S
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-------HhcCC--C
Confidence 57889996 999999999998887 48999988654322211111100 0111223332 23332 24445 9
Q ss_pred EEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 168 HVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 168 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
+||-+||.... ...+....+..|..-...+.+.+.+.++...++.+|
T Consensus 72 vvvitag~~~~--~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 72 VIVVTSGAPRK--PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp EEEECCSCC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred EEEEeeeccCC--cCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 99999997432 123445678889998999999999988775555544
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.46 E-value=0.00029 Score=55.58 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=72.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCCCCChhHHHHHHHh-hcCCceEEEE-cccCCHHHHHHHhhccCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNNYYDPSLKKARKAL-LNNHGVFVIE-GDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~-~Dl~d~~~~~~~~~~~~~ 166 (421)
|+|.|.|+ |.+|.+++..|+.+| .+++++|++++..+...-...... .......+.. .|. +.+++.
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-------~~~~~a-- 70 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-------SLLKGS-- 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-------GGGTTC--
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-------HHhccc--
Confidence 68899996 999999999999888 479999985432211111111111 1112222222 232 245556
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|+||-.||.... ...+....+..|..-...+.+.+++.+....++.+|
T Consensus 71 diVvitag~~~~--~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 71 EIIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp SEEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred cEEEEeccccCC--CCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 999999996432 223445778889999999999999988765555554
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=0.00014 Score=62.16 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcC----------------CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcc
Q 043169 87 RSGGMSVLVTGA----------------AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGD 150 (421)
Q Consensus 87 ~~~~k~vlITG~----------------sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D 150 (421)
+++||+||||+| ||-.|.+||+++.++|++|+++.-..+. ..+..+..+..
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~------------~~p~~~~~~~~- 69 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL------------PTPPFVKRVDV- 69 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC------------CCCTTEEEEEC-
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhccccc------------Cccccccccee-
Confidence 578999999986 5899999999999999999998763321 12235555443
Q ss_pred cCCHHHH----HHHhhccCCcEEEEcccccCc
Q 043169 151 INDAKLL----AKLFDAVAFTHVMHLAAQAGV 178 (421)
Q Consensus 151 l~d~~~~----~~~~~~~~~d~vi~~Ag~~~~ 178 (421)
.+.+++ .+.+... |++|++|++...
T Consensus 70 -~t~~~m~~~~~~~~~~~--D~~i~aAAvsDf 98 (223)
T d1u7za_ 70 -MTALEMEAAVNASVQQQ--NIFIGCAAVADY 98 (223)
T ss_dssp -CSHHHHHHHHHHHGGGC--SEEEECCBCCSE
T ss_pred -hhhHHHHHHHHhhhccc--eeEeeeechhhh
Confidence 333333 3444455 999999999765
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.44 E-value=0.00019 Score=57.60 Aligned_cols=118 Identities=13% Similarity=0.012 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-------cEEEEeCCCCCCChhHHHHHHH--hhcCCceEEEEcccCCHHHHHH
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-------GVVGLDNFNNYYDPSLKKARKA--LLNNHGVFVIEGDINDAKLLAK 159 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~~~~ 159 (421)
+.++|.|+||+|.+|++++-.|+..+- ++++.+.+. ..........+ .........+..-- + ..+
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~-~---~~~ 75 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP--MMGVLDGVLMELQDCALPLLKDVIATD-K---EEI 75 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG--GHHHHHHHHHHHHHTCCTTEEEEEEES-C---HHH
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCcc--chhhhhhhhhhhcccccccccccccCc-c---ccc
Confidence 457999999999999999999987642 344454422 11111112211 11222222222211 1 235
Q ss_pred HhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCC-eEEEEc
Q 043169 160 LFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQP-SIVWAS 216 (421)
Q Consensus 160 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-riV~~S 216 (421)
.+++. |+||-.||.... ...+....+..|..-.+.+.+.+.+..... .++.+|
T Consensus 76 ~~~~~--dvVVitag~~~~--~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 76 AFKDL--DVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp HTTTC--SEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCc--eEEEEecccCCC--CCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 66667 999999997532 223455678999998899998887653332 344444
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.41 E-value=0.00076 Score=53.57 Aligned_cols=117 Identities=13% Similarity=0.130 Sum_probs=74.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++|-|.|+ |.+|++++..|..++ .+++++|++.+..+......... ........+...+ +. +.+++. |+
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~a--dv 74 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY----DDLAGA--DV 74 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG----GGGTTC--SE
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc----cccCCC--cE
Confidence 57899996 999999998888777 58999998664332221111111 1122333343322 11 234555 99
Q ss_pred EEEcccccCchh-h--ccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 169 VMHLAAQAGVRY-A--MQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 169 vi~~Ag~~~~~~-~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
||-+||....+. + ..+....+..|..-...+.+.+++.++...++.+|
T Consensus 75 vvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 75 VIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp EEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999999753221 1 12345678999999999999999998775555554
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=4.8e-05 Score=53.17 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
++++|+|+||+|++|...++.+...|++|++++++.+
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~ 67 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES 67 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence 5789999999999999999999999999999988554
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00055 Score=49.68 Aligned_cols=88 Identities=18% Similarity=0.085 Sum_probs=60.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
..+||+|+|.|. |..|..+++.|.++|++|++.+.+.+..... .....+.+...... .+ .+.++
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~--------~~~~~~~~~~~~~~-~~----~~~~~-- 65 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLD--------KLPEAVERHTGSLN-DE----WLMAA-- 65 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGG--------GSCTTSCEEESBCC-HH----HHHHC--
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHH--------HHhhccceeecccc-hh----hhccC--
Confidence 368999999998 8899999999999999999999865432211 11234445444432 22 23444
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCC
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANP 208 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~ 208 (421)
|.||-.-|+.. .+.+++.+++.++
T Consensus 66 d~vi~SPGi~~------------------~~~~~~~a~~~gi 89 (93)
T d2jfga1 66 DLIVASPGIAL------------------AHPSLSAAADAGI 89 (93)
T ss_dssp SEEEECTTSCT------------------TSHHHHHHHHTTC
T ss_pred CEEEECCCCCC------------------CCHHHHHHHHcCC
Confidence 99999888632 1247777888775
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.0052 Score=48.65 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=56.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEE
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMH 171 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~ 171 (421)
+++|.|+ |-+|..+++.|.++|.+|++++.+.+ ............++.++.+|.+|++.++++--+ +.+.||-
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~-----~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~-~a~~vi~ 77 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPE-----DDIKQLEQRLGDNADVIPGDSNDSSVLKKAGID-RCRAILA 77 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCH-----HHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTT-TCSEEEE
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccch-----hHHHHHHHhhcCCcEEEEccCcchHHHHHhccc-cCCEEEE
Confidence 6899997 89999999999999999999987432 111222223346899999999999988776433 3488876
Q ss_pred cc
Q 043169 172 LA 173 (421)
Q Consensus 172 ~A 173 (421)
+.
T Consensus 78 ~~ 79 (153)
T d1id1a_ 78 LS 79 (153)
T ss_dssp CS
T ss_pred cc
Confidence 64
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.14 E-value=0.0025 Score=47.84 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=64.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.++||+|+|.|| |-+|..-++.|++.|++|++++.... + .........++.++..+..+. .++++
T Consensus 9 ~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~---~----~~~~~~~~~~i~~~~~~~~~~-----dl~~~-- 73 (113)
T d1pjqa1 9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFI---P----QFTVWANEGMLTLVEGPFDET-----LLDSC-- 73 (113)
T ss_dssp CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCC---H----HHHHHHTTTSCEEEESSCCGG-----GGTTC--
T ss_pred EeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCC---h----HHHHHHhcCCceeeccCCCHH-----HhCCC--
Confidence 378999999997 99999999999999999999876332 1 122223446777877666542 23344
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+.|+.+.+- -.-...+.+.|++.+ ..|++..
T Consensus 74 ~lv~~at~d-----------------~~~n~~i~~~a~~~~---ilVNv~D 104 (113)
T d1pjqa1 74 WLAIAATDD-----------------DTVNQRVSDAAESRR---IFCNVVD 104 (113)
T ss_dssp SEEEECCSC-----------------HHHHHHHHHHHHHTT---CEEEETT
T ss_pred cEEeecCCC-----------------HHHHHHHHHHHHHcC---CEEEeCC
Confidence 777755431 111245777888877 5787664
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.12 E-value=0.00044 Score=56.42 Aligned_cols=75 Identities=21% Similarity=0.187 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
..|++|+|+||+|.+|...++.+...|++|++++++.++.+..+ + . +...+ .|..+.. .+.-....+|
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~-----~-l---Ga~~~-i~~~~~~--~~~~~~~g~D 93 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-----A-L---GAEEA-ATYAEVP--ERAKAWGGLD 93 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-----H-T---TCSEE-EEGGGHH--HHHHHTTSEE
T ss_pred CCCCEEEEEeccccchhhhhhhhccccccccccccccccccccc-----c-c---cccee-eehhhhh--hhhhcccccc
Confidence 36889999999999999999999999999999998654332211 1 1 11111 2443322 2332333569
Q ss_pred EEEEccc
Q 043169 168 HVMHLAA 174 (421)
Q Consensus 168 ~vi~~Ag 174 (421)
+||++.|
T Consensus 94 ~v~d~~G 100 (171)
T d1iz0a2 94 LVLEVRG 100 (171)
T ss_dssp EEEECSC
T ss_pred ccccccc
Confidence 9999876
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00073 Score=55.38 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH---HHHHHHhhccC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA---KLLAKLFDAVA 165 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~~~~~~~~~~ 165 (421)
.|.+|+|+||+|++|..+++.+...|++|+++++++++ .+.. ...... ++ .|..+. +.+.++-....
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k-----~~~~-~~lGa~--~v--i~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK-----AQSA-LKAGAW--QV--INYREEDLVERLKEITGGKK 97 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH-----HHHH-HHHTCS--EE--EETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHH-----HHHH-HhcCCe--EE--EECCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999999999999999885431 1111 112211 22 244443 34555545556
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
+|+|+++.|.
T Consensus 98 ~d~v~d~~g~ 107 (179)
T d1qora2 98 VRVVYDSVGR 107 (179)
T ss_dssp EEEEEECSCG
T ss_pred eEEEEeCccH
Confidence 7999999874
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.04 E-value=0.0013 Score=52.22 Aligned_cols=81 Identities=19% Similarity=0.154 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHH-HhhccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAK-LFDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~-~~~~~~~ 166 (421)
.+.|+|.|.||.|.+|+.+++.|.+.|++|.+.+|+..... ........+.+...++.....+.. .....+.
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~ 79 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA-------ESILANADVVIVSVPINLTLETIERLKPYLTE 79 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH-------HHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc-------chhhhhccccccccchhhheeeeecccccccC
Confidence 56789999999999999999999999999999999653211 112233444455455444333322 2222222
Q ss_pred -cEEEEcccc
Q 043169 167 -THVMHLAAQ 175 (421)
Q Consensus 167 -d~vi~~Ag~ 175 (421)
.+++..+..
T Consensus 80 ~~iiiD~~Sv 89 (152)
T d2pv7a2 80 NMLLADLTSV 89 (152)
T ss_dssp TSEEEECCSC
T ss_pred CceEEEeccc
Confidence 467776653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.03 E-value=0.00043 Score=56.90 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=31.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.|+|.|.|+ |.+|..++..|+++|++|.+++|+.
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 379999998 9999999999999999999999954
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.01 E-value=0.00063 Score=56.37 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHH-HHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL-DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAK-LLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-~~~~~~~~~~~ 166 (421)
++.+|||+||+|++|...++.+...|.++++. +.+. .......... .--.++...-.+.. .+++.. ...+
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~-----e~~~~l~~~~--gad~vi~~~~~~~~~~~~~~~-~~Gv 101 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQ-----EKCLFLTSEL--GFDAAVNYKTGNVAEQLREAC-PGGV 101 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSH-----HHHHHHHHHS--CCSEEEETTSSCHHHHHHHHC-TTCE
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchH-----HHHhhhhhcc--cceEEeeccchhHHHHHHHHh-ccCc
Confidence 44789999999999999999988899876554 4321 1111111111 11223322222333 333333 3357
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccccc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVY 221 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~ 221 (421)
|+|+.+.|-. .....++.++..| |+|.+.+++.|
T Consensus 102 Dvv~D~vGg~------------------~~~~~~~~l~~~G---~iv~~G~~s~~ 135 (187)
T d1vj1a2 102 DVYFDNVGGD------------------ISNTVISQMNENS---HIILCGQISQY 135 (187)
T ss_dssp EEEEESSCHH------------------HHHHHHTTEEEEE---EEEEC------
T ss_pred eEEEecCCch------------------hHHHHhhhccccc---cEEEecccccc
Confidence 9999998731 0223444445555 89988766554
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.01 E-value=0.00023 Score=57.41 Aligned_cols=73 Identities=22% Similarity=0.169 Sum_probs=50.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
.+++++|+|.|+ |.+|..+++.|.++|. +|.+..|+.++. ...... -+... .+.+++.+.+.++
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka----~~l~~~----~~~~~-----~~~~~~~~~l~~~- 85 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERA----VELARD----LGGEA-----VRFDELVDHLARS- 85 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHH----HHHHHH----HTCEE-----CCGGGHHHHHHTC-
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHH----HHHHHh----hhccc-----ccchhHHHHhccC-
Confidence 378999999997 9999999999999997 588888743211 111111 12222 2345666777777
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
|+||++.+.
T Consensus 86 -Divi~atss 94 (159)
T d1gpja2 86 -DVVVSATAA 94 (159)
T ss_dssp -SEEEECCSS
T ss_pred -CEEEEecCC
Confidence 999999874
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0022 Score=50.50 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=26.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-C---cEEEEeCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRG-D---GVVGLDNFN 124 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g-~---~V~~~~r~~ 124 (421)
+|+|.|.||||++|+.+++.|+++. + +++.+..+.
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~ 39 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ 39 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc
Confidence 3689999999999999999888763 2 566565433
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.0018 Score=53.05 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=59.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHH----HHHHhh
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKL----LAKLFD 162 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----~~~~~~ 162 (421)
..|.+|+|+|+ |.||...++.+...|+ +|++++++.+ +.+.. +... . -.++.-.=.+..+ +.+...
T Consensus 27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~-----~~~~a-~~lG-a-~~vi~~~~~~~~~~~~~i~~~~~ 97 (182)
T d1vj0a2 27 FAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPN-----RLKLA-EEIG-A-DLTLNRRETSVEERRKAIMDITH 97 (182)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHH-----HHHHH-HHTT-C-SEEEETTTSCHHHHHHHHHHHTT
T ss_pred CCCCEEEEECC-Cccchhheecccccccccccccccccc-----ccccc-cccc-c-eEEEeccccchHHHHHHHHHhhC
Confidence 35789999997 9999999999999997 7999988432 11111 1111 1 1233222223332 333333
Q ss_pred ccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 163 AVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 163 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
...+|+||.+.|.... ....++.++..| +++.+.
T Consensus 98 ~~g~Dvvid~vG~~~~-----------------~~~a~~~l~~~G---~iv~~G 131 (182)
T d1vj0a2 98 GRGADFILEATGDSRA-----------------LLEGSELLRRGG---FYSVAG 131 (182)
T ss_dssp TSCEEEEEECSSCTTH-----------------HHHHHHHEEEEE---EEEECC
T ss_pred CCCceEEeecCCchhH-----------------HHHHHHHhcCCC---EEEEEe
Confidence 3357999999985321 234455566655 888765
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.0022 Score=52.02 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc---c
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA---V 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~---~ 164 (421)
.+.+|+|.|+ |.+|...++.+...|+ +|++++++.+ +.+...+ .. --.++..+-.+.....+.++. .
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~-----rl~~a~~-~G--a~~~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT-----RLSKAKE-IG--ADLVLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH-----HHHHHHH-TT--CSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHH-----HHHHHHH-hC--CcccccccccccccccccccccCCC
Confidence 5778999987 9999999999999998 6888887432 1111111 11 112333444555555554432 3
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
.+|++|.+.|.
T Consensus 97 g~Dvvid~~G~ 107 (171)
T d1pl8a2 97 KPEVTIECTGA 107 (171)
T ss_dssp CCSEEEECSCC
T ss_pred CceEEEeccCC
Confidence 67999999984
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.90 E-value=0.0018 Score=52.84 Aligned_cols=97 Identities=21% Similarity=0.229 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC---HHHHHHHhhcc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND---AKLLAKLFDAV 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~~~~~~~~~ 164 (421)
.|.+|+|.|+ |+||...++.+...|+ +|++++++.+ +.+...+ ... .+++ |..+ .+.+.+.....
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~-----r~~~a~~-lGa--~~~i--~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPI-----CVEAAKF-YGA--TDIL--NYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHH-----HHHHHHH-HTC--SEEE--CGGGSCHHHHHHHHTTTS
T ss_pred CCCEEEEEcC-Ccchhhhhhhhhcccccccccccchhh-----hHHHHHh-hCc--cccc--cccchhHHHHHHHHhhcc
Confidence 5778999986 9999999999998997 6888887432 1111111 111 1222 3332 34455555554
Q ss_pred CCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
.+|++|.++|.... ....++.+++.| +++.++
T Consensus 96 G~D~vid~~g~~~~-----------------~~~a~~~~~~~G---~iv~~G 127 (174)
T d1jqba2 96 GVDRVIMAGGGSET-----------------LSQAVKMVKPGG---IISNIN 127 (174)
T ss_dssp CEEEEEECSSCTTH-----------------HHHHHHHEEEEE---EEEECC
T ss_pred CcceEEEccCCHHH-----------------HHHHHHHHhcCC---EEEEEe
Confidence 57999999985321 134456666655 888765
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.83 E-value=0.0011 Score=52.32 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=28.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC---cEEEEeCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD---GVVGLDNFN 124 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~---~V~~~~r~~ 124 (421)
.|+|.|.||||++|+.+++.|.+++| ++..+..+.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~ 39 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAE 39 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecc
Confidence 47899999999999999999987654 676665433
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.76 E-value=0.0037 Score=47.66 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.++|+|+|.|| |++|.++|..|++.|.+|+++.+...
T Consensus 28 ~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 28 PEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp TTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCc
Confidence 46789999997 99999999999999999999988653
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.74 E-value=0.0032 Score=47.83 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC----ChhHHHHHHHhhcCCceEEEE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY----DPSLKKARKALLNNHGVFVIE 148 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~v~~~~ 148 (421)
.+++++|.|| |++|-++|..|.++|.+|.++.+...-. ++.......+.....+++++.
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~ 91 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRF 91 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEE
T ss_pred cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEe
Confidence 4689999997 9999999999999999999999876433 223233333344445555543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.74 E-value=0.0025 Score=48.07 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.+++++|.|| |++|-.+|..|.+.|.+|+++.|...
T Consensus 21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 21 VPKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence 4579999997 99999999999999999999998654
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.71 E-value=0.0068 Score=50.45 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=29.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|.|.| .|++|..+|..|+++|++|+++|.+.
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 6789997 59999999999999999999999853
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.70 E-value=0.0024 Score=48.26 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
+.++|+|.|| |++|-++|..|++.|.+|+++.|...
T Consensus 21 ~p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 21 ESKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CCCEEEEECC-chHHHHHHHHHHhccccceeeehhcc
Confidence 3689999997 99999999999999999999998653
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.67 E-value=0.00069 Score=56.20 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=32.0
Q ss_pred CCCEEEE-EcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC
Q 043169 89 GGMSVLV-TGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY 127 (421)
Q Consensus 89 ~~k~vlI-TG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 127 (421)
.|.+|+| +||+|++|...++.....|++|++++|+.+..
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~ 67 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNL 67 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTH
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEeccccc
Confidence 4566666 69999999999999888999999999865533
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.59 E-value=0.0077 Score=43.53 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=48.7
Q ss_pred CCCCCEEEEEcCCChhH-HHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVG-THVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG-~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+.|++.+.|- |++| +.||+.|.++|++|.+.|+..+ +.. +.+.+.++.+...+-.+ .++ +
T Consensus 5 ~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~---~~~-----~~L~~~Gi~v~~g~~~~------~i~--~ 67 (96)
T d1p3da1 5 MRRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADG---VVT-----QRLAQAGAKIYIGHAEE------HIE--G 67 (96)
T ss_dssp CTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCS---HHH-----HHHHHTTCEEEESCCGG------GGT--T
T ss_pred chhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCC---hhh-----hHHHHCCCeEEECCccc------cCC--C
Confidence 356789999996 6666 7789999999999999998542 111 11223466665544322 123 3
Q ss_pred CcEEEEccccc
Q 043169 166 FTHVMHLAAQA 176 (421)
Q Consensus 166 ~d~vi~~Ag~~ 176 (421)
.|.||...++.
T Consensus 68 ~d~vV~S~AI~ 78 (96)
T d1p3da1 68 ASVVVVSSAIK 78 (96)
T ss_dssp CSEEEECTTSC
T ss_pred CCEEEECCCcC
Confidence 49999888864
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.0036 Score=47.85 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.|+++|.|| |+||-++|..|++.|.+|+++.|...
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeeccc
Confidence 478999997 99999999999999999999999764
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.0037 Score=47.55 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
..|+++|.|| |+||-++|..|.+.|.+|.++.+..
T Consensus 22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 22 IPKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence 3579999997 9999999999999999999998855
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.51 E-value=0.0038 Score=47.50 Aligned_cols=34 Identities=24% Similarity=0.126 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
..++++|.|| |+||-++|..|.+.|.+|.++.|+
T Consensus 19 ~P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 19 CPGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence 3468999997 999999999999999999999875
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.005 Score=49.78 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.++|+|+|.|+ |+.+++++..|.+.|.+|+++.|+.
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchH
Confidence 68999999997 9999999999999999999999854
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.50 E-value=0.00075 Score=54.75 Aligned_cols=38 Identities=42% Similarity=0.372 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY 126 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~ 126 (421)
.+.+|||+||+|++|...++.....|++|++++++.++
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k 60 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA 60 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence 45679999999999999999888889999999997653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.50 E-value=0.0015 Score=52.87 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC-CHHHHHHHhhccCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN-DAKLLAKLFDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~~~ 166 (421)
..|.+|+|.|+ |.+|...++.+...|++|++++++.++.+.++ + .. .. .++ |.. +.+..++..+ .+
T Consensus 26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~-----~-lG-a~-~~i--~~~~~~~~~~~~~~--~~ 92 (168)
T d1piwa2 26 GPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-----K-MG-AD-HYI--ATLEEGDWGEKYFD--TF 92 (168)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-----H-HT-CS-EEE--EGGGTSCHHHHSCS--CE
T ss_pred CCCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhh-----c-cC-Cc-EEe--eccchHHHHHhhhc--cc
Confidence 36789999997 99999999888888999999999765432221 1 11 11 122 222 2223333333 35
Q ss_pred cEEEEcccc
Q 043169 167 THVMHLAAQ 175 (421)
Q Consensus 167 d~vi~~Ag~ 175 (421)
|+++.+.+.
T Consensus 93 d~vi~~~~~ 101 (168)
T d1piwa2 93 DLIVVCASS 101 (168)
T ss_dssp EEEEECCSC
T ss_pred ceEEEEecC
Confidence 999998775
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.48 E-value=0.005 Score=46.53 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.+++++|.|| |+||-.+|..|++.|.+|.++.+...
T Consensus 21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecc
Confidence 4588999997 99999999999999999999998653
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.0016 Score=52.36 Aligned_cols=36 Identities=33% Similarity=0.403 Sum_probs=32.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY 127 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 127 (421)
|+|+|.|+ |.+|..++..|++.|++|.+++|+....
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~ 36 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPY 36 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence 78999998 9999999999999999999999976543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.004 Score=46.86 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=31.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.++|+|.|| |++|-++|..|.+.|.+|.++.|...
T Consensus 21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecch
Confidence 478999997 99999999999999999999998653
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.32 E-value=0.0053 Score=46.60 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=31.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
+++++|.|| |++|-++|..|.+.|.+|+++.+...
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccceEEEEecccc
Confidence 478999997 99999999999999999999998654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.32 E-value=0.0036 Score=47.04 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.+++++|.|| |++|-++|..|.+.|.+|.++.+.+.
T Consensus 20 ~p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 20 LPQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCCeEEEECC-CHHHHHHHHHHhhcccceEEEeeecc
Confidence 3578999997 99999999999999999999988653
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.30 E-value=0.006 Score=49.77 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=27.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEe
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLD 121 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~ 121 (421)
+++|.|.||||++|..|++.|.++ ..++..+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 468999999999999999999998 56775553
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0065 Score=48.87 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
..|.+|+|.|+ |+||...++.+...|++|+++++++++.+ ... ..... . ..|..+.+......+.+ |
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~-----~a~-~lGad--~--~i~~~~~~~~~~~~~~~--D 95 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKRE-----AAK-ALGAD--E--VVNSRNADEMAAHLKSF--D 95 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHH-----HHH-HHTCS--E--EEETTCHHHHHTTTTCE--E
T ss_pred CCCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHH-----HHh-ccCCc--E--EEECchhhHHHHhcCCC--c
Confidence 36889999986 99999999998889999999988554221 111 11111 1 23566666555554444 9
Q ss_pred EEEEccccc
Q 043169 168 HVMHLAAQA 176 (421)
Q Consensus 168 ~vi~~Ag~~ 176 (421)
++|.+.|..
T Consensus 96 ~vid~~g~~ 104 (168)
T d1uufa2 96 FILNTVAAP 104 (168)
T ss_dssp EEEECCSSC
T ss_pred eeeeeeecc
Confidence 999999853
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.22 E-value=0.0091 Score=48.02 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH-HHHHHHhhccCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA-KLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~~~~ 166 (421)
.+.+|+|.||+|.+|...++.+...|. +|++++++.+ +.+ ..+... .. .++..+-.|. +.+.+....-.+
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~-----~~~-~~~~~G-a~-~~i~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE-----AVE-AAKRAG-AD-YVINASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH-----HHH-HHHHHT-CS-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchh-----hHH-HHHHcC-Cc-eeeccCCcCHHHHHHHHhhcccc
Confidence 578999999999999999999998884 7888887432 111 111111 11 2333222232 233333333357
Q ss_pred cEEEEcccc
Q 043169 167 THVMHLAAQ 175 (421)
Q Consensus 167 d~vi~~Ag~ 175 (421)
|++|.++|.
T Consensus 99 d~vid~~g~ 107 (170)
T d1jvba2 99 DAVIDLNNS 107 (170)
T ss_dssp EEEEESCCC
T ss_pred hhhhccccc
Confidence 999999874
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.17 E-value=0.002 Score=51.94 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=30.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|.|.|. |.+|+.+++.|.+.|++|++.+|+.
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCc
Confidence 67899986 9999999999999999999999964
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0013 Score=53.84 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.+.+|||+||+|++|...++.+...|++|++++++.+
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~ 67 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES 67 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchh
Confidence 3458999999999999999999999999999998554
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.11 E-value=0.0032 Score=51.51 Aligned_cols=78 Identities=23% Similarity=0.172 Sum_probs=47.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL-NNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
|+|.|.|+ |-.|.++|..|++.|++|.+..|..+. +..+....... ..-.......++.-.+++.+++++. |+|
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a--d~I 75 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA--EVV 75 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccH--HHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc--chh
Confidence 78999997 999999999999999999999883320 01111111100 0011111112233345567788877 999
Q ss_pred EEcc
Q 043169 170 MHLA 173 (421)
Q Consensus 170 i~~A 173 (421)
|...
T Consensus 76 i~av 79 (180)
T d1txga2 76 LLGV 79 (180)
T ss_dssp EECS
T ss_pred hccc
Confidence 8754
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.09 E-value=0.0081 Score=48.53 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.++|+|+|.|+ |+.+++++..|.+.+.+|+++.|+.++. +...........+.....|-.+ .. ..|
T Consensus 16 ~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a----~~l~~~~~~~~~~~~~~~~~~~-------~~--~~d 81 (171)
T d1p77a1 16 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKT----KELAERFQPYGNIQAVSMDSIP-------LQ--TYD 81 (171)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHH----HHHHHHHGGGSCEEEEEGGGCC-------CS--CCS
T ss_pred CCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHH----HHHHHHHhhccccchhhhcccc-------cc--ccc
Confidence 68899999996 9999999999999889999999964321 2222222222344455444221 22 459
Q ss_pred EEEEcccc
Q 043169 168 HVMHLAAQ 175 (421)
Q Consensus 168 ~vi~~Ag~ 175 (421)
+|||+...
T Consensus 82 iiIN~tp~ 89 (171)
T d1p77a1 82 LVINATSA 89 (171)
T ss_dssp EEEECCCC
T ss_pred eeeecccc
Confidence 99999764
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.06 E-value=0.016 Score=46.89 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=30.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
..|-|.|- |-+|..+++.|++.|++|++.+|+.+
T Consensus 3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~ 36 (176)
T d2pgda2 3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVS 36 (176)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 45788996 99999999999999999999999664
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.06 E-value=0.022 Score=44.52 Aligned_cols=96 Identities=16% Similarity=0.065 Sum_probs=54.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-C---cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG-D---GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
|+|.|.||||++|+.+++.|+++. + ++..+..+.... +.. ....... ...+..+.+ .++++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g-k~~------~~~~~~~--~~~~~~~~~----~~~~~-- 65 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV-PAP------NFGKDAG--MLHDAFDIE----SLKQL-- 65 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS-BCC------CSSSCCC--BCEETTCHH----HHTTC--
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc-ccc------ccCCcce--eeecccchh----hhccc--
Confidence 689999999999999999888753 3 455444322211 100 0001111 111223333 24555
Q ss_pred cEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 167 THVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 167 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
|++|.+... .-+..+.+.+.+.+.+..+|=.||..
T Consensus 66 DvvF~alp~------------------~~s~~~~~~l~~~g~~~~VIDlSsdf 100 (147)
T d1mb4a1 66 DAVITCQGG------------------SYTEKVYPALRQAGWKGYWIDAASTL 100 (147)
T ss_dssp SEEEECSCH------------------HHHHHHHHHHHHTTCCSEEEESSSTT
T ss_pred cEEEEecCc------------------hHHHHHhHHHHHcCCceEEEeCCccc
Confidence 999988752 11446677777777533466667654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.02 E-value=0.0045 Score=47.49 Aligned_cols=70 Identities=20% Similarity=0.097 Sum_probs=50.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVM 170 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi 170 (421)
|+++|.|. |-+|..+++.| +|++|++++.+.+. . ......++.++.+|.++++.++++--+ +.+.+|
T Consensus 1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~----~-----~~~~~~~~~~i~Gd~~~~~~L~~a~i~-~A~~vi 67 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENV----R-----KKVLRSGANFVHGDPTRVSDLEKANVR-GARAVI 67 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTH----H-----HHHHHTTCEEEESCTTSHHHHHHTTCT-TCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHH----H-----HHHHhcCccccccccCCHHHHHHhhhh-cCcEEE
Confidence 57899996 88999999999 46778888774431 1 112235789999999999988875322 347777
Q ss_pred Ecc
Q 043169 171 HLA 173 (421)
Q Consensus 171 ~~A 173 (421)
-+.
T Consensus 68 ~~~ 70 (129)
T d2fy8a1 68 VNL 70 (129)
T ss_dssp ECC
T ss_pred Eec
Confidence 543
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=96.01 E-value=0.0088 Score=45.57 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+++++|.|| |+||-++|..|.+.|.+|+++.+..
T Consensus 25 ~p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 25 VPGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CCSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred cCCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence 4589999997 9999999999999999999998855
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=96.01 E-value=0.011 Score=44.51 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
..+++|+|.|| |++|-.+|..|++.|.+|.++.|...
T Consensus 20 ~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 20 EPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence 35789999997 99999999999999999999998653
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.94 E-value=0.0056 Score=49.35 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~ 124 (421)
++|+|+|.|+ |+.+++++..|.+.|. +|.++.|+.
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccH
Confidence 5789999997 9999999999999996 799998854
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.92 E-value=0.0094 Score=45.93 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY 126 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~ 126 (421)
.+++|+|.|| |++|-++|..|.+.|.+|.++.+....
T Consensus 34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~~ 70 (133)
T d1q1ra2 34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAARV 70 (133)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeecccc
Confidence 5789999997 999999999999999999999986643
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.90 E-value=0.0068 Score=46.06 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY 126 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~ 126 (421)
-+++++|.|| |+||-++|..|.+.|.+|.++.|+...
T Consensus 24 ~p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 24 IPKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp CCSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred cCCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 3578999997 999999999999999999999986643
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.88 E-value=0.0091 Score=48.94 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCCh
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDP 129 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 129 (421)
+-++|.|.|+ |.+|..+|..++..|++|++.+++.+..+.
T Consensus 3 ~I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~ 42 (186)
T d1wdka3 3 DVKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQ 42 (186)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhh
Confidence 3467999998 999999999999999999999997654433
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.86 E-value=0.0078 Score=48.12 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=62.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHH------HHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKK------ARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
+++|.+.| .|-+|+.+++.|+++|++|.+.+|+.++.+..... ...+.. ....++..-+.+.+.+++++..
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~--~~~diii~~v~~~~~~~~v~~~ 77 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAV--QGADVVISMLPASQHVEGLYLD 77 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHH--TSCSEEEECCSCHHHHHHHHHS
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhc--cccCeeeecccchhhHHHHHhc
Confidence 36788998 59999999999999999999999854321111000 000001 2233444455666666665543
Q ss_pred c-------C-CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEE
Q 043169 164 V-------A-FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVW 214 (421)
Q Consensus 164 ~-------~-~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~ 214 (421)
. + =+++|++.... ...+..+.+.+++.+. +++-
T Consensus 78 ~~~~~~~l~~g~iiid~st~~----------------p~~~~~~~~~~~~~gi--~~~d 118 (162)
T d3cuma2 78 DDGLLAHIAPGTLVLECSTIA----------------PTSARKIHAAARERGL--AMLD 118 (162)
T ss_dssp TTCHHHHSCTTCEEEECSCCC----------------HHHHHHHHHHHHHTTC--EEEE
T ss_pred cccccccCCCCCEEEECCCCC----------------HHHHHHHHHHHHHCCC--cEEe
Confidence 2 1 25666665432 2335677778888775 6664
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0066 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=23.1
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 99 AGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 99 sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
||-.|.+||++|.++|++|+.+.+..
T Consensus 45 SGk~G~alA~~~~~~Ga~V~li~g~~ 70 (290)
T d1p9oa_ 45 SGRRGATSAEAFLAAGYGVLFLYRAR 70 (290)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred chHHHHHHHHHHHHcCCEEEEEecCC
Confidence 58899999999999999999997643
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.77 E-value=0.002 Score=52.67 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
++++|+|+|.|+ |+.+++++..|.+.| +|+++.|+.+
T Consensus 15 ~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ 51 (177)
T d1nvta1 15 RVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVE 51 (177)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhh
Confidence 378999999996 999999999997777 9999999544
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.042 Score=46.88 Aligned_cols=113 Identities=24% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCC---------------ChhHHHHHHH-hhcCCceEEEEcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYY---------------DPSLKKARKA-LLNNHGVFVIEGD 150 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~---------------~~~~~~~~~~-~~~~~~v~~~~~D 150 (421)
+++++|+|.|+ |++|++++..|++.|. +++++|.+.=.. .......... ....+.+.+...+
T Consensus 28 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~ 106 (247)
T d1jw9b_ 28 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 106 (247)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhh
Confidence 56789999996 9999999999999996 677776533100 0000111110 1112333333333
Q ss_pred cC-CHHHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 151 IN-DAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 151 l~-d~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
.. +.+.....+... |++|.+.. |......+-++|.+.+. .+|+.+....+|
T Consensus 107 ~~~~~~~~~~~~~~~--divid~~d-----------------~~~~~~~in~~~~~~~i--p~i~g~~~~~~g 158 (247)
T d1jw9b_ 107 ALLDDAELAALIAEH--DLVLDCTD-----------------NVAVRNQLNAGCFAAKV--PLVSGAAIRMEG 158 (247)
T ss_dssp SCCCHHHHHHHHHTS--SEEEECCS-----------------SHHHHHHHHHHHHHHTC--CEEEEEEEBTEE
T ss_pred hhhhhcccccccccc--ceeeeccc-----------------hhhhhhhHHHHHHHhCC--Cccccccccccc
Confidence 22 334445555555 77776542 23334566677878775 577766544443
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.60 E-value=0.01 Score=48.37 Aligned_cols=38 Identities=32% Similarity=0.358 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.+.||+|.|.|. |-||+.+++.|..-|.+|++.+|+..
T Consensus 39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~ 76 (181)
T d1qp8a1 39 LIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPK 76 (181)
T ss_dssp CCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cccCceEEEecc-ccccccceeeeecccccccccccccc
Confidence 478999999996 89999999999999999999998653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.47 E-value=0.025 Score=45.69 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC-HHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND-AKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~~~~~~~~~~ 165 (421)
..|.+|+|.|+ |++|...++.+...|. +|+++++++++.+- ..+.. ....+-.-|-.+ .+.+.+......
T Consensus 28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~-----Ak~~G--A~~~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEK-----AMAVG--ATECISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-----HHHHT--CSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHH-----HHhcC--CcEEECccccchHHHHHHHHhcccc
Confidence 46889999986 9999999999999994 79999986543222 12211 111111122222 344555555557
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
+|++|.+.|.
T Consensus 100 ~d~vi~~~g~ 109 (176)
T d1d1ta2 100 VGYTFEVIGH 109 (176)
T ss_dssp CCEEEECSCC
T ss_pred ceEEEEeCCc
Confidence 8999999885
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.46 E-value=0.022 Score=45.87 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC-CHHHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN-DAKLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~~~~~~~~~~ 165 (421)
..|.+|+|.|+ |++|...+..+...|. +|+++++++++. +...+. . ....+...|-. ..+.+.+....-.
T Consensus 27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~-----~~a~~~-G-a~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKF-----AKAKEV-G-ATECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH-----HHHHHT-T-CSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHH-----HHHHHh-C-CeeEEecCCchhHHHHHHHHHhcCC
Confidence 46889999999 7899999999999985 788888754322 111111 1 11111112222 2334444444446
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
+|++|.+.|.
T Consensus 99 ~D~vid~~G~ 108 (176)
T d2jhfa2 99 VDFSFEVIGR 108 (176)
T ss_dssp BSEEEECSCC
T ss_pred CCEEEecCCc
Confidence 7999999885
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.41 E-value=0.011 Score=47.22 Aligned_cols=33 Identities=33% Similarity=0.345 Sum_probs=29.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|-|.|. |.+|+.+|+.|+++|++|++.+|+.
T Consensus 1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~ 33 (161)
T d1vpda2 1 MKVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNP 33 (161)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 57889985 9999999999999999999999843
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.38 E-value=0.012 Score=46.96 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
..-+|+|.|+ |-.|..-++.....|++|.++|.+.+ .+++.... ....+++ -..+.+.+.+.++++ |+
T Consensus 31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~----~l~~l~~~--~~~~~~~---~~~~~~~l~~~~~~a--Di 98 (168)
T d1pjca1 31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVE----RLSYLETL--FGSRVEL---LYSNSAEIETAVAEA--DL 98 (168)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH--HGGGSEE---EECCHHHHHHHHHTC--SE
T ss_pred CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHH----HHHHHHHh--hccccee---ehhhhhhHHHhhccC--cE
Confidence 4568999997 99999999999999999999998543 12222221 1223333 356788899999988 99
Q ss_pred EEEcccccC
Q 043169 169 VMHLAAQAG 177 (421)
Q Consensus 169 vi~~Ag~~~ 177 (421)
||..|-+.+
T Consensus 99 vI~aalipG 107 (168)
T d1pjca1 99 LIGAVLVPG 107 (168)
T ss_dssp EEECCCCTT
T ss_pred EEEeeecCC
Confidence 999987643
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.005 Score=50.89 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=35.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhH
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSL 131 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 131 (421)
-|+|.|.|+ |.+|+.+|..++..|++|++.+++.+..+...
T Consensus 4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~ 44 (192)
T d1f0ya2 4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSK 44 (192)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHH
Confidence 478999998 99999999999999999999999775444333
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.026 Score=46.16 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=61.5
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
..+.+++|.|.|. |.||+.+++.|..-|.+|+..++....... .. . .+ ++++++++..
T Consensus 40 ~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-------------~~--~--~~---~~l~ell~~s- 97 (188)
T d1sc6a1 40 FEARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKLPLG-------------NA--T--QV---QHLSDLLNMS- 97 (188)
T ss_dssp CCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCCCT-------------TC--E--EC---SCHHHHHHHC-
T ss_pred ccccceEEEEeec-ccchhhhhhhcccccceEeeccccccchhh-------------hh--h--hh---hhHHHHHhhc-
Confidence 3478999999985 999999999999999999999874431111 00 1 11 2466777777
Q ss_pred CcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccc
Q 043169 166 FTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 220 (421)
Q Consensus 166 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v 220 (421)
|+|+.++..... ....+ ....++.+++.. .+|++|-..+
T Consensus 98 -Dii~i~~plt~~------T~~li------~~~~l~~mk~~a---~lIN~aRG~l 136 (188)
T d1sc6a1 98 -DVVSLHVPENPS------TKNMM------GAKEISLMKPGS---LLINASRGTV 136 (188)
T ss_dssp -SEEEECCCSSTT------TTTCB------CHHHHHHSCTTE---EEEECSCSSS
T ss_pred -cceeecccCCcc------hhhhc------cHHHHhhCCCCC---EEEEcCcHHh
Confidence 888877654321 11111 123455554432 6777776654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.31 E-value=0.027 Score=45.20 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=46.2
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEc-c-cCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG-D-INDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-D-l~d~~~~~~~~~~~ 164 (421)
..|.+|+|.|+ |++|...++.+...|.. |++.+++++ +.+...+. ... .++.- + -.+.+.+.+.....
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~-----k~~~ak~l-Ga~--~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKD-----KFARAKEF-GAT--ECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG-----GHHHHHHH-TCS--EEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHH-----HHHHHHHh-CCc--EEEeCCchhhHHHHHHHHHcCC
Confidence 36789999998 78999999999999975 555555332 12222222 111 12211 1 12333333333334
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
.+|++|.+.|.
T Consensus 98 g~D~vid~~G~ 108 (176)
T d2fzwa2 98 GVDYSFECIGN 108 (176)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEeeecCCC
Confidence 67999999884
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.28 E-value=0.036 Score=44.59 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC--CHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN--DAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d~~~~~~~~~~~ 164 (421)
..|.+|+|.|+ |+||...++.+...|+. |++.+++++ +.+...+. .. ..++...-. ..+.+.+.....
T Consensus 27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~-----r~~~a~~~-Ga--~~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 27 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGE-----KFPKAKAL-GA--TDCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-----GHHHHHHT-TC--SEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchH-----HHHHHHHh-CC--CcccCCccchhhhhhhHhhhhcC
Confidence 36789999986 99999999999999985 666676433 22222221 11 122221111 234444444455
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
.+|++|.++|.
T Consensus 98 G~d~vie~~G~ 108 (174)
T d1e3ia2 98 GVDYSLDCAGT 108 (174)
T ss_dssp CBSEEEESSCC
T ss_pred CCcEEEEeccc
Confidence 78999999985
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.26 E-value=0.0051 Score=50.75 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=33.6
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
..++||++.|.|. |.||+.+++.|..-|.+|+..++..
T Consensus 43 ~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 80 (191)
T d1gdha1 43 EKLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHR 80 (191)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred ceecccceEEeec-ccchHHHHHHHHhhccccccccccc
Confidence 3478999999996 9999999999999999999998744
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.22 E-value=0.025 Score=45.35 Aligned_cols=78 Identities=18% Similarity=0.104 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCc---eEEEEccc--CCHHHHHHHhh
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG---VFVIEGDI--NDAKLLAKLFD 162 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~---v~~~~~Dl--~d~~~~~~~~~ 162 (421)
++||+|+|.|-|.-+|+-++..|+++|+.|.......... ...... ......|+ ...+.+++...
T Consensus 27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~ 96 (171)
T d1edza1 27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK----------FTRGESLKLNKHHVEDLGEYSEDLLKKCSL 96 (171)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE----------EESCCCSSCCCCEEEEEEECCHHHHHHHHH
T ss_pred CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc----------cccccceeeeeeccccccccchhHHhhccc
Confidence 7899999999999999999999999999998776522100 000000 01112222 34667888888
Q ss_pred ccCCcEEEEcccccC
Q 043169 163 AVAFTHVMHLAAQAG 177 (421)
Q Consensus 163 ~~~~d~vi~~Ag~~~ 177 (421)
.. |+||..+|...
T Consensus 97 ~a--DIvIsavG~p~ 109 (171)
T d1edza1 97 DS--DVVITGVPSEN 109 (171)
T ss_dssp HC--SEEEECCCCTT
T ss_pred cC--CEEEEccCCCc
Confidence 77 99999888643
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.18 E-value=0.028 Score=42.78 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=27.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~ 120 (421)
|+|.|.|++|-+|+.|++.+.++|+++++.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~ 30 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK 30 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence 679999999999999999999999987754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.16 E-value=0.071 Score=42.70 Aligned_cols=78 Identities=23% Similarity=0.272 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEE-eCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH-HHHHHHhhccC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGL-DNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA-KLLAKLFDAVA 165 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~~~~~~~~~~ 165 (421)
..|.+|+|.|+ |.||...++.+...|++++++ ++++ .+.+... ... -.+++..+-.|. +.+.++... .
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~-----~k~~~a~-~~G--a~~~i~~~~~~~~~~i~~~t~g-g 96 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVE-----SRLELAK-QLG--ATHVINSKTQDPVAAIKEITDG-G 96 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCH-----HHHHHHH-HHT--CSEEEETTTSCHHHHHHHHTTS-C
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHH-----HHHHHHH-HcC--CeEEEeCCCcCHHHHHHHHcCC-C
Confidence 35789999997 999999999998889876554 5422 1111111 121 123332222222 233333333 6
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
+|+||.+.|.
T Consensus 97 ~D~vid~~G~ 106 (174)
T d1f8fa2 97 VNFALESTGS 106 (174)
T ss_dssp EEEEEECSCC
T ss_pred CcEEEEcCCc
Confidence 7999999884
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.15 E-value=0.025 Score=45.61 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCC--HHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIND--AKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~~~~~~~~~ 164 (421)
..|.+|+|.|+ |++|...++.+...|. +|++++++.++. +...+. . -..++...-.| .+.+.+....-
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-----~~a~~l-G--a~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKF-----PKAIEL-G--ATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGH-----HHHHHT-T--CSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHH-----HHHHHc-C--CcEEEcCCCchhHHHHHHHHhcCC
Confidence 46789999996 9999999999999996 688888754322 112221 1 11222211122 23444444433
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
..|++|.+.|.
T Consensus 97 G~d~vid~~g~ 107 (174)
T d1p0fa2 97 GVDYAVECAGR 107 (174)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEEEEcCCC
Confidence 67999999875
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.13 E-value=0.012 Score=50.11 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
...|+|+|.|| |..|..+|.+|+++|++|.+++|.
T Consensus 4 ~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 4 HSQKRVVVLGS-GVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCC
Confidence 45678999997 999999999999999999999984
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.0083 Score=47.26 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
++||+|||.|| |.+|..-++.|++.|++|++++.
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 78999999998 99999999999999999999964
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.06 E-value=0.059 Score=42.70 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
..|.+|+|.|+ |.+|...++.+...|.+|++++++
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcCCccceecch
Confidence 35789999986 999999999888899999999984
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.015 Score=46.20 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
+.||+|+|.|-+.-+|+-++..|.++|+.|+....
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~ 69 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR 69 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred cccceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence 68999999999999999999999999999988764
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.06 E-value=0.017 Score=45.45 Aligned_cols=34 Identities=26% Similarity=0.225 Sum_probs=29.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
|+|-|.|. |.+|+.+++.|+++|++|++.+++.+
T Consensus 1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~ 34 (152)
T d1i36a2 1 LRVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRS 34 (152)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred CEEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchh
Confidence 57888875 99999999999999999998887543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.97 E-value=0.058 Score=43.13 Aligned_cols=78 Identities=21% Similarity=0.192 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
.|.+|+|.|+ |++|...++.+...|. .|++.+++++ +.+ ..+.. ...+++..+=.+.+.+.+......+|
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~-----k~~-~~~~~--ga~~~i~~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEE-----KLK-LAERL--GADHVVDARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHH-----HHH-HHHHT--TCSEEEETTSCHHHHHHHHTTTCCEE
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhH-----HHH-HHhhc--ccceeecCcccHHHHHHHhhCCCCce
Confidence 5789999986 9999999999888886 5566666321 111 11111 12233333222334444444444689
Q ss_pred EEEEcccc
Q 043169 168 HVMHLAAQ 175 (421)
Q Consensus 168 ~vi~~Ag~ 175 (421)
++|.++|.
T Consensus 103 ~vid~~g~ 110 (172)
T d1h2ba2 103 VAMDFVGS 110 (172)
T ss_dssp EEEESSCC
T ss_pred EEEEecCc
Confidence 99999985
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.90 E-value=0.06 Score=44.11 Aligned_cols=77 Identities=21% Similarity=0.165 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccC--C-HHHHHHHhhc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDIN--D-AKLLAKLFDA 163 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d-~~~~~~~~~~ 163 (421)
..|.+|+|.|+ |.+|...++.+...|. +|++++++.+ +.+....-+...+. |-. + .+.+.++...
T Consensus 24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~---------rl~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~g 92 (195)
T d1kola2 24 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPA---------RLAHAKAQGFEIAD-LSLDTPLHEQIAALLGE 92 (195)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH---------HHHHHHHTTCEEEE-TTSSSCHHHHHHHHHSS
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccch---------hhHhhhhccccEEE-eCCCcCHHHHHHHHhCC
Confidence 36889999986 9999888888877886 6778877332 11111112333222 222 2 2345555555
Q ss_pred cCCcEEEEcccc
Q 043169 164 VAFTHVMHLAAQ 175 (421)
Q Consensus 164 ~~~d~vi~~Ag~ 175 (421)
...|++|.+.|.
T Consensus 93 ~g~D~vid~vG~ 104 (195)
T d1kola2 93 PEVDCAVDAVGF 104 (195)
T ss_dssp SCEEEEEECCCT
T ss_pred CCcEEEEECccc
Confidence 567999999984
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=94.88 E-value=0.0063 Score=50.38 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=33.4
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
..+.||+|.|.|. |-||+.+++.|..-|.+|++.++.
T Consensus 39 ~el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~ 75 (197)
T d1j4aa1 39 REVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIF 75 (197)
T ss_dssp CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred ccccCCeEEEecc-cccchhHHHhHhhhcccccccCcc
Confidence 4478999999995 999999999999999999999874
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.87 E-value=0.0061 Score=48.37 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD 115 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~ 115 (421)
=+|.|.||||++|.++++.|.++.+
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC
Confidence 3789999999999999999998865
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.78 E-value=0.023 Score=45.41 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
++||+|+|.|.+.-+|+-++..|+++|+.|..+..
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~ 71 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS 71 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred cccceEEEEecCCccchHHHHHHHhccCceEEEec
Confidence 79999999999999999999999999999998875
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=94.71 E-value=0.023 Score=46.73 Aligned_cols=40 Identities=30% Similarity=0.334 Sum_probs=35.2
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
...+.||+|.|.|. |-||+.+++.|..-|.+|+..++...
T Consensus 44 ~~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 44 AARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred ceeeeCceEEEecc-ccccccceeeeeccccceeeccCccc
Confidence 34589999999996 99999999999999999999988543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.69 E-value=0.011 Score=48.27 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDN 122 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r 122 (421)
+..+|.|.||||++|+.+++.|.++- .++..+.-
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S 38 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTA 38 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEec
Confidence 45689999999999999999999884 57666653
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.68 E-value=0.016 Score=46.65 Aligned_cols=119 Identities=17% Similarity=0.109 Sum_probs=67.8
Q ss_pred CCEEEEEcCCChhHHH--HHHHHHHC----CCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhh
Q 043169 90 GMSVLVTGAAGFVGTH--VSLALKKR----GDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~--l~~~L~~~----g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
+|+|.|.|| |.+|.. ++..|+.. +.+++++|+++++.+......... .......++... +| .+++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~--td---~~eaL~ 75 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT--MN---LDDVII 75 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE--SC---HHHHHT
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe--CC---hhhccc
Confidence 478999997 888865 34445543 458999999654433222111111 111222322221 23 456777
Q ss_pred ccCCcEEEEcccccCchhhccC------------C------------chhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 163 AVAFTHVMHLAAQAGVRYAMQN------------P------------HSYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 163 ~~~~d~vi~~Ag~~~~~~~~~~------------~------------~~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
++ |+||+.++..+......+ + .....-|+.-...+++.+++..+...+|++|
T Consensus 76 da--d~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 76 DA--DFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp TC--SEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CC--CeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence 77 999999987432211100 0 0012347777888999998888775666655
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.04 Score=51.13 Aligned_cols=81 Identities=17% Similarity=0.105 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC---------C-Ch----hH----HHHHHHhhcCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNY---------Y-DP----SL----KKARKALLNNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~---------~-~~----~~----~~~~~~~~~~~~v~~~~ 148 (421)
+++.+|||.|+ |++|.++++.|+..|. ++.++|.+.=. . +. .+ .+......+.-++..+.
T Consensus 35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 113 (426)
T d1yovb1 35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 113 (426)
T ss_dssp HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence 35578999998 8899999999999997 78888874311 0 00 01 11111122334556666
Q ss_pred cccCCHHHHHHHhhccCCcEEEEcc
Q 043169 149 GDINDAKLLAKLFDAVAFTHVMHLA 173 (421)
Q Consensus 149 ~Dl~d~~~~~~~~~~~~~d~vi~~A 173 (421)
.++.+.. .++++++ |+||++.
T Consensus 114 ~~i~~~~--~~~~~~~--DlVi~~~ 134 (426)
T d1yovb1 114 NKIQDFN--DTFYRQF--HIIVCGL 134 (426)
T ss_dssp SCGGGBC--HHHHTTC--SEEEECC
T ss_pred ccccchH--HHHHHhc--chheecc
Confidence 6665432 3566666 8888765
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.44 E-value=0.065 Score=42.43 Aligned_cols=35 Identities=29% Similarity=0.217 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+.+|+|.|+ |.||...++.+...|++|++++++.
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~ 61 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGD 61 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCH
Confidence 5789999976 9999999999999999999998743
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.047 Score=43.12 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=32.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
.+.||+|+|.| .|.||+.+|+.|...|.+|++.++
T Consensus 21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~ 55 (163)
T d1li4a1 21 MIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEI 55 (163)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred eecCCEEEEec-cccccHHHHHHHHhCCCeeEeeec
Confidence 47899999999 699999999999999999999987
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.032 Score=45.14 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=34.7
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY 126 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~ 126 (421)
..++|+|+|.|| |..|-..|..|+++|++|+++.+...-
T Consensus 40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 40 AVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp CSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCcc
Confidence 357899999997 999999999999999999999986543
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.30 E-value=0.069 Score=42.65 Aligned_cols=121 Identities=11% Similarity=0.086 Sum_probs=65.3
Q ss_pred CEEEEEcC-CChhHHHHHHHHHHCC----CcEEEEeCCCCCCCh-hHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 91 MSVLVTGA-AGFVGTHVSLALKKRG----DGVVGLDNFNNYYDP-SLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 91 k~vlITG~-sG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
++|.|.|| +.+.+..++..++... -+++++|.+++.... .............+........+|. .+.+++.
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~---~~al~ga 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDR---RRALDGA 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCH---HHHHTTC
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCc---hhhcCCC
Confidence 57888886 4466666766665542 388999885542111 1111111111112222222333443 4567777
Q ss_pred CCcEEEEcccccCchhhccCCc------------------hhhhhhHHHHHHHHHHHHhcCCCCeEEEEc
Q 043169 165 AFTHVMHLAAQAGVRYAMQNPH------------------SYVHSNIAGLVTLLEACKSANPQPSIVWAS 216 (421)
Q Consensus 165 ~~d~vi~~Ag~~~~~~~~~~~~------------------~~~~~N~~g~~~l~~~~~~~~~~~riV~~S 216 (421)
|+||+.||....+....+.. ....-|+.-...+.+.+++..+...++.+|
T Consensus 79 --DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 79 --DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp --SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred --CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 99999999754321111100 112346666778888888888775666555
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=94.20 E-value=0.073 Score=39.49 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHH---CCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKK---RGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~---~g~~V~~~~r~~~ 125 (421)
.+++++|.|| |++|-++|..|.+ .|.+|.++.|...
T Consensus 17 ~p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 17 APKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp CCSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred cCCeEEEECC-ChHHHHHHHHhHhhcccccccceeccccc
Confidence 3579999997 9999999987665 4889999998654
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.073 Score=39.99 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=55.7
Q ss_pred ccCCCCCEEEEEcCCC----------hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCH
Q 043169 85 IHRSGGMSVLVTGAAG----------FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDA 154 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~ 154 (421)
|++.+.|+|||.|+.. +-+.+.++.|.+.|++++++.-+.+..... .....++.+ .=-..
T Consensus 2 p~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd-------~d~aD~lYf---ePlt~ 71 (127)
T d1a9xa3 2 PKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTD-------PEMADATYI---EPIHW 71 (127)
T ss_dssp CCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGC-------GGGSSEEEC---SCCCH
T ss_pred CCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcC-------hhhcceeee---ecCCH
Confidence 3445778999999843 678999999999999999997655432221 111122222 22356
Q ss_pred HHHHHHhhccCCcEEEEccc
Q 043169 155 KLLAKLFDAVAFTHVMHLAA 174 (421)
Q Consensus 155 ~~~~~~~~~~~~d~vi~~Ag 174 (421)
+.+.++++..+||.|+-..|
T Consensus 72 e~v~~Ii~~E~pd~il~~~G 91 (127)
T d1a9xa3 72 EVVRKIIEKERPDAVLPTMG 91 (127)
T ss_dssp HHHHHHHHHHCCSEEECSSS
T ss_pred HHHHHHHHHhCcCCeEEEee
Confidence 88999999999999986655
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.10 E-value=0.25 Score=37.22 Aligned_cols=90 Identities=16% Similarity=0.098 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCC---ChhHHHHHHHHHHCC-CcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc
Q 043169 88 SGGMSVLVTGAA---GFVGTHVSLALKKRG-DGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA 163 (421)
Q Consensus 88 ~~~k~vlITG~s---G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~ 163 (421)
.+.|+|.|.|+| +..|..+.+.|.+.| .+|+.+....+.. .++.. .-++.|. -
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i--------------~G~~~-y~sl~dl------p-- 62 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV--------------QGVKA-YKSVKDI------P-- 62 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE--------------TTEEC-BSSTTSC------S--
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc--------------CCeEe-ecchhhc------C--
Confidence 467899999999 899999999997766 6888875421100 11111 1123221 1
Q ss_pred cCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 164 VAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 164 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
..+|.++-+.. -..+..+++.|.+.|.+ .++.+|+..
T Consensus 63 ~~vDlvvi~vp------------------~~~~~~~~~~~~~~g~~-~~vi~s~Gf 99 (129)
T d2csua1 63 DEIDLAIIVVP------------------KRFVKDTLIQCGEKGVK-GVVIITAGF 99 (129)
T ss_dssp SCCSEEEECSC------------------HHHHHHHHHHHHHHTCC-EEEECCCSS
T ss_pred CCCceEEEecC------------------hHHhHHHHHHHHHcCCC-EEEEecccc
Confidence 14688776542 22345678888888875 777777653
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=93.99 E-value=0.066 Score=39.80 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHH---CCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKK---RGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~---~g~~V~~~~r~~~ 125 (421)
.+++++|.|| |++|-++|..|.+ +|.+|.++.+...
T Consensus 19 ~p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 19 PPRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CCSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred cCCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 3578999997 9999999977665 4568999988553
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=93.96 E-value=0.036 Score=45.69 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
+++||+|+|-| -|.+|+++++.|.+.|++|++.+.
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~ 58 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADT 58 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecc
Confidence 48999999999 599999999999999999998876
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.93 E-value=0.11 Score=45.06 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=32.3
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
..++||+|+|-|- |-+|+++++.|.+.|++|+.++-
T Consensus 32 ~~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 32 PGFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp SSSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence 3489999999995 99999999999999999988764
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=93.90 E-value=0.034 Score=45.41 Aligned_cols=39 Identities=21% Similarity=0.046 Sum_probs=34.4
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
...+.++++.|.|. |.||+.+++.|..-|.+|...++..
T Consensus 39 ~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 39 AYDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred ceeccccceeeccc-cccchhhhhhhhccCceEEEEeecc
Confidence 34578999999995 9999999999999999999999854
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=93.85 E-value=0.13 Score=40.77 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=61.5
Q ss_pred CCEEEEEcCCChhHHH-HHHHHHHC-----CCcEEEEeCCCCCCChhHHHHHHH-hhcCCceEEEEcccCCHHHHHHHhh
Q 043169 90 GMSVLVTGAAGFVGTH-VSLALKKR-----GDGVVGLDNFNNYYDPSLKKARKA-LLNNHGVFVIEGDINDAKLLAKLFD 162 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~-l~~~L~~~-----g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~~~~~~~ 162 (421)
..+|.|.||.+ +|.. ++..|+.+ +.++++.|.++++.+......... ........+... +| ..++++
T Consensus 3 ~~KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d---~~eal~ 76 (167)
T d1u8xx1 3 SFSIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT--TD---PEEAFT 76 (167)
T ss_dssp CEEEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE--SC---HHHHHS
T ss_pred CceEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec--CC---hhhccC
Confidence 45788888844 5543 44455443 248999998665433211111111 111222222221 12 456777
Q ss_pred ccCCcEEEEcccccCchhhccCCchh------------------hhhhHHHHHHHHHHHHhcCCCCeEEEEcc
Q 043169 163 AVAFTHVMHLAAQAGVRYAMQNPHSY------------------VHSNIAGLVTLLEACKSANPQPSIVWASS 217 (421)
Q Consensus 163 ~~~~d~vi~~Ag~~~~~~~~~~~~~~------------------~~~N~~g~~~l~~~~~~~~~~~riV~~SS 217 (421)
+. |+||+.||....+....+.... ..-|+.-...+++.+++..+...++.+|-
T Consensus 77 ~A--D~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TN 147 (167)
T d1u8xx1 77 DV--DFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSN 147 (167)
T ss_dssp SC--SEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CC--CEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 77 9999999975332111111100 11234445666777777777656666553
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.82 E-value=0.029 Score=45.63 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~ 125 (421)
.+|+|+|.|| |..|...|..|+++|+ +|+++.++..
T Consensus 3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 4689999997 9999999999999998 5999988553
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.77 E-value=0.015 Score=46.63 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=28.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNF 123 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~ 123 (421)
+|+|+|.|+ |.||..+++.|.+.|+ +|++.+++
T Consensus 1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~ 35 (171)
T d2g5ca2 1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDIN 35 (171)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 357999986 9999999999999996 68888874
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=93.75 E-value=0.04 Score=45.43 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=34.6
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
..+.+|+|.|.|. |-||+.+++.|..-|.+|++.++...
T Consensus 41 ~~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 79 (199)
T d1dxya1 41 KELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPM 79 (199)
T ss_dssp CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred ccccceeeeeeec-ccccccccccccccceeeeccCCccc
Confidence 4578999999995 99999999999999999999998543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.75 E-value=0.031 Score=48.57 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=31.0
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
+|+|+|.|| |.-|...|.+|+++|++|.++.++.
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 589999997 9999999999999999999998743
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.72 E-value=0.24 Score=37.64 Aligned_cols=30 Identities=27% Similarity=0.155 Sum_probs=24.7
Q ss_pred EEEEEcCCChhHHHHHHHHHHC-CCcEEEEe
Q 043169 92 SVLVTGAAGFVGTHVSLALKKR-GDGVVGLD 121 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~ 121 (421)
+|.|.|++|=+|+.+++.+.+. ++++++..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~ 31 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAEL 31 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 6899999999999999998775 57766543
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.71 E-value=0.047 Score=46.03 Aligned_cols=40 Identities=28% Similarity=0.288 Sum_probs=35.0
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNY 126 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~ 126 (421)
+..++|+|+|.|| |..|...|..|+++|++|.++.+...-
T Consensus 45 ~~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 45 QTKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp CCSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred cccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecccc
Confidence 3357899999997 999999999999999999999886643
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=93.67 E-value=0.047 Score=46.48 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
..++|+|.|| |..|..+|..|+++|++|+++.++..
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4578999997 99999999999999999999998543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=93.66 E-value=0.014 Score=47.31 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=29.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|-|.| .|-+|..+++.|++.|++|++.+|+.
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 6788888 59999999999999999999999854
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.48 E-value=0.039 Score=48.98 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
+.|+|+|.|| |.-|..+|..|+++|++|.++..++.
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3689999997 99999999999999999999987553
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=93.44 E-value=0.026 Score=46.18 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
+.+++|.|.|| |-.|.+++..|++.|++|.+.+|+.
T Consensus 5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 5 LYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp CCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecH
Confidence 45678999997 9999999999999999999999854
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=93.35 E-value=0.046 Score=48.16 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=33.9
Q ss_pred ccCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 85 IHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 85 ~~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
++..+.|+|+|.|| |..|...|.+|+++|++|.++.++.
T Consensus 25 ~~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 25 KATSNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CCCSSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34457889999997 9999999999999999999998743
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=93.31 E-value=0.049 Score=43.81 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=27.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNF 123 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~ 123 (421)
+++|.|.||||++|..+++.|+++- .++..+.-+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~ 35 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSR 35 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeecc
Confidence 3689999999999999999999874 466666543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.30 E-value=0.0066 Score=51.40 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=32.4
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
+++||+|+|-|- |-+|+++++.|.+.|++|++.+.
T Consensus 36 ~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~ 70 (230)
T d1leha1 36 SLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDV 70 (230)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecc
Confidence 379999999995 99999999999999999999876
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.037 Score=52.88 Aligned_cols=113 Identities=13% Similarity=0.062 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCC--------------CChhHHHHHHHhh----cCCceEEEE
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNY--------------YDPSLKKARKALL----NNHGVFVIE 148 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~--------------~~~~~~~~~~~~~----~~~~v~~~~ 148 (421)
+...+|+|.|+ |++|.++++.|+..|. +++++|.+.-. ....+.......+ +...+.++.
T Consensus 23 L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~ 101 (529)
T d1yova1 23 LESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE 101 (529)
T ss_dssp HHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEc
Confidence 55679999997 8999999999999995 67777653210 0001111111111 112233333
Q ss_pred cccCCH-HHHHHHhhccCCcEEEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEccccccC
Q 043169 149 GDINDA-KLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSVYG 222 (421)
Q Consensus 149 ~Dl~d~-~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~v~g 222 (421)
.+..+. +...++++.+ |+||.+. .|......+-++|++.++ .+|.+.+.+.||
T Consensus 102 ~~~~~~~~~~~~~~~~~--dvVv~~~-----------------~~~~~~~~l~~~c~~~~i--p~i~~~~~G~~G 155 (529)
T d1yova1 102 ESPENLLDNDPSFFCRF--TVVVATQ-----------------LPESTSLRLADVLWNSQI--PLLICRTYGLVG 155 (529)
T ss_dssp SCHHHHHHSCGGGGGGC--SEEEEES-----------------CCHHHHHHHHHHHHHHTC--CEEEEEEETTEE
T ss_pred CCchhhhhhHHHHhcCC--CEEEECC-----------------CCHHHHHHHHHHHHHcCC--CEEEEeccCCEE
Confidence 332211 0111333433 7777553 234445567888888886 688888877766
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.06 E-value=0.037 Score=45.00 Aligned_cols=38 Identities=29% Similarity=0.319 Sum_probs=33.5
Q ss_pred cCCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 86 HRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 86 ~~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
..+.+|++.|.|. |.||+.+++.|..-|.+|+..++..
T Consensus 40 ~~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~ 77 (184)
T d1ygya1 40 TEIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYV 77 (184)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred ccccceeeeeccc-cchhHHHHHHhhhccceEEeecCCC
Confidence 4478999999995 9999999999999999999998743
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.15 Score=38.87 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHH----CCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKK----RGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~----~g~~V~~~~r~~~ 125 (421)
+.++++|.|| |++|-+++..|++ .|.+|+++.+...
T Consensus 36 ~~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 36 EVKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp HCSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 4678999997 9999999999964 5899999988654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.98 E-value=0.049 Score=42.71 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=29.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|.+.|+ |-+|+++++.|.+.|++|++.+|+.
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSL 33 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcChH
Confidence 57888885 9999999999999999999998854
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=92.81 E-value=0.046 Score=47.04 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=29.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
-|+|.|| |.+|..+|.+|+++|++|+++++..
T Consensus 6 DvvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGG-GIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3899997 9999999999999999999999843
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=92.65 E-value=0.42 Score=33.31 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=44.6
Q ss_pred CEEEEEcCCChhHH-HHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEE
Q 043169 91 MSVLVTGAAGFVGT-HVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHV 169 (421)
Q Consensus 91 k~vlITG~sG~iG~-~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~v 169 (421)
|+|-+.|- |++|- .||+.|.++|+.|.+.|+..+ +..+ .+...++.+..+. +.+. ++ .+|+|
T Consensus 2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~---~~t~-----~L~~~Gi~i~~gh--~~~~----i~--~~d~v 64 (89)
T d1j6ua1 2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEET---ERTA-----YLRKLGIPIFVPH--SADN----WY--DPDLV 64 (89)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCC---HHHH-----HHHHTTCCEESSC--CTTS----CC--CCSEE
T ss_pred cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCC---hhHH-----HHHHCCCeEEeee--cccc----cC--CCCEE
Confidence 67888886 56664 789999999999999998542 1111 2333556554432 1111 22 34999
Q ss_pred EEccccc
Q 043169 170 MHLAAQA 176 (421)
Q Consensus 170 i~~Ag~~ 176 (421)
|...++.
T Consensus 65 V~SsAI~ 71 (89)
T d1j6ua1 65 IKTPAVR 71 (89)
T ss_dssp EECTTCC
T ss_pred EEecCcC
Confidence 9998874
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.60 E-value=0.053 Score=44.82 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=48.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC-----ChhHHHHHHHhhcCCceEEEE-cccCCHHHHHHHhhcc
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY-----DPSLKKARKALLNNHGVFVIE-GDINDAKLLAKLFDAV 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~-----~~~~~~~~~~~~~~~~v~~~~-~Dl~d~~~~~~~~~~~ 164 (421)
|+|++.| ++..|..+.+.|.+.|++|.++....++. ........ ...++.++. .++.+.+ +.+.++..
T Consensus 1 Mkiv~~~-~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a----~~~~i~~~~~~~~~~~~-~~~~i~~~ 74 (203)
T d2blna2 1 MKTVVFA-YHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLA----AERGIPVYAPDNVNHPL-WVERIAQL 74 (203)
T ss_dssp CEEEEEE-CHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHH----HHHTCCEECCSCCCSHH-HHHHHHHT
T ss_pred CeEEEEe-cCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHH----HHcCCcceecccccchh-hhhhhhhh
Confidence 6788886 46789999999999999997765432211 01111111 123455554 4555655 45566777
Q ss_pred CCcEEEEccc
Q 043169 165 AFTHVMHLAA 174 (421)
Q Consensus 165 ~~d~vi~~Ag 174 (421)
++|++|....
T Consensus 75 ~~Dlii~~g~ 84 (203)
T d2blna2 75 SPDVIFSFYY 84 (203)
T ss_dssp CCSEEEEESC
T ss_pred cccceeeeec
Confidence 9999887764
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=92.57 E-value=0.25 Score=41.73 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
+++|++|+|-| -|-+|+++++.|.+.|++|+.++-
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence 47999999999 599999999999999999988764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.54 E-value=0.14 Score=39.88 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=29.3
Q ss_pred CCCEEEEE-cCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVT-GAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlIT-G~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
-++.|+|. .|.|+||.++|+.|+++|.+|.++.+..
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~ 74 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 74 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence 35566665 3559999999999999999999999854
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=92.50 E-value=0.15 Score=39.98 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=48.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+.||+++|.| =|.+|+-+|+.|...|.+|+++.+++ .. .-...-.++++.. ++++++..
T Consensus 20 ~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DP------i~---alqA~mdGf~v~~--------~~~a~~~a-- 79 (163)
T d1v8ba1 20 LISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDP------IC---AIQAVMEGFNVVT--------LDEIVDKG-- 79 (163)
T ss_dssp CCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCH------HH---HHHHHTTTCEECC--------HHHHTTTC--
T ss_pred eecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCc------hh---hHHHHhcCCccCc--------hhHccccC--
Confidence 47899999999 59999999999999999999998722 11 1111223444332 24566655
Q ss_pred cEEEEccccc
Q 043169 167 THVMHLAAQA 176 (421)
Q Consensus 167 d~vi~~Ag~~ 176 (421)
|++|-.-|..
T Consensus 80 Di~vTaTGn~ 89 (163)
T d1v8ba1 80 DFFITCTGNV 89 (163)
T ss_dssp SEEEECCSSS
T ss_pred cEEEEcCCCC
Confidence 7777776653
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=92.50 E-value=0.062 Score=36.72 Aligned_cols=33 Identities=24% Similarity=0.133 Sum_probs=30.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|.|.|| |.+|+.++.+-.+.|++|++++-+.
T Consensus 2 k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp EEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 78999996 9999999999999999999998744
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=92.43 E-value=0.064 Score=43.38 Aligned_cols=80 Identities=18% Similarity=0.042 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh----------hcCCceEEEEcccCCHHHH
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL----------LNNHGVFVIEGDINDAKLL 157 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~v~~~~~Dl~d~~~~ 157 (421)
..+++||..|| |.|. .+..|+++|++|+++|.+.+..+.+.+...... .....+.++.+|..+....
T Consensus 19 ~~~~rvLd~GC--G~G~-~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 19 VPGARVLVPLC--GKSQ-DMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CTTCEEEETTT--CCSH-HHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEecC--cCCH-HHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 46889999998 4454 666889999999999986542222221111000 0123456788888764431
Q ss_pred HHHhhccCCcEEEEccc
Q 043169 158 AKLFDAVAFTHVMHLAA 174 (421)
Q Consensus 158 ~~~~~~~~~d~vi~~Ag 174 (421)
.. ..+|.|+....
T Consensus 96 ~~----~~~D~i~~~~~ 108 (201)
T d1pjza_ 96 DI----GHCAAFYDRAA 108 (201)
T ss_dssp HH----HSEEEEEEESC
T ss_pred cc----cceeEEEEEee
Confidence 11 13477766543
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.43 E-value=0.071 Score=42.30 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCC--cEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGD--GVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~--~V~~~~r~~ 124 (421)
.||+|+|.|| |++|-.+|..|.+.|. +|+++.+..
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 3799999997 9999999999999885 688887755
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.39 E-value=0.13 Score=41.22 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
.-+|+|.|| |-.|..-++.....|++|.++|.+.+
T Consensus 29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 458999997 99999999999999999999998664
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=92.39 E-value=0.21 Score=38.80 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeC
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKR--GDGVVGLDN 122 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r 122 (421)
+|+|.|.|+||.||.....-+.+. .++|+++.-
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa 35 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA 35 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 468999999999999999988876 478887754
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=92.32 E-value=0.17 Score=39.30 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC--CCcEEEEeC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKR--GDGVVGLDN 122 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~--g~~V~~~~r 122 (421)
++|+|.|.|+||.||....+-+.+. .++|+++.-
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 3589999999999999999998775 478877753
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=92.31 E-value=0.027 Score=44.20 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=29.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC-CcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG-DGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g-~~V~~~~r~~ 124 (421)
|+|.+.|+ |-+|+++++.|++.| ++|++.+|+.
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 67889987 999999999999887 8999999854
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.66 E-value=0.46 Score=35.01 Aligned_cols=76 Identities=12% Similarity=0.123 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCC----------hhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHH
Q 043169 89 GGMSVLVTGAAG----------FVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLA 158 (421)
Q Consensus 89 ~~k~vlITG~sG----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~ 158 (421)
+.|+|||.|+.. +-|.+.++.|.+.|++++++.-+.+...... ....++.+-+ -..+.+.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~-------d~aD~lYfep---lt~e~v~ 72 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDY-------DTSDRLYFEP---VTLEDVL 72 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTST-------TSSSEEECCC---CSHHHHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcCh-------hhcCceEEcc---CCHHHHH
Confidence 568999999743 6788999999999999999987665433221 1112222222 2567889
Q ss_pred HHhhccCCcEEEEccc
Q 043169 159 KLFDAVAFTHVMHLAA 174 (421)
Q Consensus 159 ~~~~~~~~d~vi~~Ag 174 (421)
++++..+||.|+-..|
T Consensus 73 ~Ii~~E~p~~ii~~~G 88 (121)
T d1a9xa4 73 EIVRIEKPKGVIVQYG 88 (121)
T ss_dssp HHHHHHCCSEEECSSS
T ss_pred HHHHHhCCCEEEeehh
Confidence 9998889998886654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.65 E-value=0.3 Score=38.62 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEc-ccC-CHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEG-DIN-DAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~-Dl~-d~~~~~~~~~~~ 164 (421)
..|.+|+|.|+ |++|...+..+...|. +|+++++++++. +...+. . --+++.. +-. ..+.+.+.....
T Consensus 27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl-----~~a~~~-G--Ad~~in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKF-----EKAKVF-G--ATDFVNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH-----HHHHHT-T--CCEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHH-----HHHHHc-C--CcEEEcCCCcchhHHHHHHhhccC
Confidence 36789999996 7788888888888876 577777744322 112221 1 1122221 111 234555555554
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
.+|++|.+.|.
T Consensus 98 G~d~vid~~G~ 108 (175)
T d1cdoa2 98 GVDFSLECVGN 108 (175)
T ss_dssp CBSEEEECSCC
T ss_pred CcceeeeecCC
Confidence 67999999985
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=91.57 E-value=0.076 Score=45.74 Aligned_cols=33 Identities=36% Similarity=0.532 Sum_probs=30.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|+|.|| |.-|...|.+|+++|++|+++.++.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 67999997 9999999999999999999998743
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=91.22 E-value=0.21 Score=40.99 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=55.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhH----HHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSL----KKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
+.|+|++.| ++-++..+.+.|.+.|++|.++....++..... ...........++.+...+..+.+...+.++..
T Consensus 2 ~~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (206)
T d1fmta2 2 ESLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAEL 80 (206)
T ss_dssp CCCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHT
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhh
Confidence 467899998 478899999999999999877664332211100 001111222345666666666677777888888
Q ss_pred CCcEEEEcccc
Q 043169 165 AFTHVMHLAAQ 175 (421)
Q Consensus 165 ~~d~vi~~Ag~ 175 (421)
++|++|.....
T Consensus 81 ~~d~~v~~~~~ 91 (206)
T d1fmta2 81 QADVMVVVAYG 91 (206)
T ss_dssp TCSEEEEESCC
T ss_pred cceEEEeeccc
Confidence 99988776543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=90.86 E-value=0.1 Score=44.91 Aligned_cols=31 Identities=35% Similarity=0.573 Sum_probs=28.6
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|.|| |.+|..+|.+|+++|++|+++++..
T Consensus 6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 899997 9999999999999999999999854
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=90.56 E-value=0.4 Score=41.91 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=49.6
Q ss_pred CCCCEEE-EEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhh-ccC
Q 043169 88 SGGMSVL-VTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFD-AVA 165 (421)
Q Consensus 88 ~~~k~vl-ITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~-~~~ 165 (421)
.++++|| +..++|+++-+ +++.|++|+.++.+....+.+.+..........+++++..|+.+. +++..+ .-+
T Consensus 131 ~~~~rVLdlf~~tG~~sl~----aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~--l~~~~~~~~~ 204 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLV----AAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF--IQREERRGST 204 (309)
T ss_dssp SSCCEEEEETCTTCHHHHH----HHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH--HHHHHHHTCC
T ss_pred cCCCeEEEecCCCcHHHHH----HHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh--HHHHhhcCCC
Confidence 3578888 56666666554 456899999998765433333333333233345789999998543 333332 236
Q ss_pred CcEEEEcc
Q 043169 166 FTHVMHLA 173 (421)
Q Consensus 166 ~d~vi~~A 173 (421)
+|+||..-
T Consensus 205 fD~IilDP 212 (309)
T d2igta1 205 YDIILTDP 212 (309)
T ss_dssp BSEEEECC
T ss_pred CCEEEECC
Confidence 79999863
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.45 E-value=0.13 Score=42.78 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=28.6
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|.|| |.-|...|..|+++|++|.++.++.
T Consensus 8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 899995 9999999999999999999998854
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.92 E-value=0.16 Score=40.35 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
.+++|+|.|| |++|-+++..|.+.|.+|.++.+..
T Consensus 2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence 4678999997 9999999999999998876665544
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.90 E-value=0.39 Score=38.86 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=54.9
Q ss_pred CCCEEE-EEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhh-cCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 89 GGMSVL-VTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL-NNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 89 ~~k~vl-ITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
.+.+++ +|.|+|+.-.++.+.+ . +.+|+++|++.. +.+....... ...++.++.++..+...+..-+....+
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~----~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~v 96 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSE----VLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKV 96 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHH----HHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred CCCEEEEecCCCcHHHHHHHhcC-C-CCeEEEeechHH----HHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCc
Confidence 344444 6777788777777765 3 468999999543 2222222211 245799999999887776555544467
Q ss_pred cEEEEcccccC
Q 043169 167 THVMHLAAQAG 177 (421)
Q Consensus 167 d~vi~~Ag~~~ 177 (421)
|.|+.-.|+.+
T Consensus 97 dgIl~DlGvSs 107 (192)
T d1m6ya2 97 DGILMDLGVST 107 (192)
T ss_dssp EEEEEECSCCH
T ss_pred ceeeeccchhH
Confidence 99998888854
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=89.77 E-value=0.15 Score=44.44 Aligned_cols=32 Identities=34% Similarity=0.505 Sum_probs=28.6
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN 124 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~ 124 (421)
.|+|.|| |.+|..+|.+|+++|. +|.+++++.
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 5899997 9999999999999996 699998853
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.2 Score=43.73 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
+.++|+|.|| |.-|...|.+|+++|++|.++-.+.
T Consensus 4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4567999997 9999999999999999999997643
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.63 E-value=0.77 Score=38.39 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDN 122 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r 122 (421)
+++||+|+|-|- |-+|+++++.|.+. |.+|+.+.-
T Consensus 29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD 64 (239)
T d1gtma1 29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSD 64 (239)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeeccc
Confidence 378999999996 99999999999864 899888754
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.33 E-value=0.034 Score=46.75 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=25.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGL 120 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~ 120 (421)
|+|+|.|| |-+|..+|.+|+++|++|+++
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~ 29 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYHSVLQP 29 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHTTTSSS
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCceEE
Confidence 68999997 999999999999999875433
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.14 E-value=0.15 Score=44.06 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=29.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
+|+|.|| |-.|..+|..|+++|++|.++.+..
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5999998 8999999999999999999998843
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.13 E-value=0.16 Score=41.31 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=27.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|.|.| .|++|..+|..| ++|++|+++|.++
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILP 32 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCH
Confidence 6788997 699999999766 5799999999854
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=0.45 Score=38.85 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=46.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCC--ChhHHHHHHHhhcCCceEE------EEcccCCHHHHHHHhh
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYY--DPSLKKARKALLNNHGVFV------IEGDINDAKLLAKLFD 162 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~v~~------~~~Dl~d~~~~~~~~~ 162 (421)
|+|++.| ++..|..+.+.|.+.|++|+++....++. .......... .++.+ ..-+..+.+.+ +.++
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~----~~ipv~~~~~~~~~~~~~~~~~-~~l~ 74 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEK----DGVPVFKYSRWRAKGQALPDVV-AKYQ 74 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHH----HTCCEEECSCCEETTEECHHHH-HHHH
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHh----cCCcccccccccccccccHHHH-HHHH
Confidence 6788887 57889999999999999998765322211 1112221111 12222 23344555544 4456
Q ss_pred ccCCcEEEEcc
Q 043169 163 AVAFTHVMHLA 173 (421)
Q Consensus 163 ~~~~d~vi~~A 173 (421)
+.++|++|-.+
T Consensus 75 ~~~~Dliv~~~ 85 (203)
T d2bw0a2 75 ALGAELNVLPF 85 (203)
T ss_dssp TTCCSEEEESS
T ss_pred HhCCCceEEee
Confidence 67899988765
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=88.65 E-value=0.1 Score=41.28 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGL 120 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~ 120 (421)
+.++|.|.|++|-+|+.+++.+.+. +.++++.
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~ 35 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAA 35 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 3468999999999999999999886 5676554
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=88.13 E-value=0.22 Score=42.41 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=31.5
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r 122 (421)
++++++|+|.| .|-+|+++++.|.+.|++|+.+.-
T Consensus 33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 33 TLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp CSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence 47899999999 599999999999999999987753
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.90 E-value=0.2 Score=43.68 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=30.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
..|+|.|| |.-|..+|..|++.|++|.++.+++.
T Consensus 2 ~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 36899997 99999999999999999999987553
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=87.86 E-value=2.7 Score=30.39 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=27.9
Q ss_pred CCEEEEEcCCChhHHHHHHHHHHCCCcEEEEe
Q 043169 90 GMSVLVTGAAGFVGTHVSLALKKRGDGVVGLD 121 (421)
Q Consensus 90 ~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~ 121 (421)
||+|||.=-+-.+-..+...|.+.|++|+..+
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a 32 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEA 32 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEE
Confidence 68999999899999999999999999987654
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.68 E-value=1.1 Score=37.23 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=29.8
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHH-CCCcEEEEe
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKK-RGDGVVGLD 121 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~-~g~~V~~~~ 121 (421)
++++++|+|-| .|-+|+++++.|.+ .|++|+.++
T Consensus 28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vs 62 (234)
T d1b26a1 28 DPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVS 62 (234)
T ss_dssp CTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEee
Confidence 47899999998 69999999999975 599998776
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=87.31 E-value=0.093 Score=44.39 Aligned_cols=76 Identities=11% Similarity=-0.057 Sum_probs=50.0
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
...+++||=.||..|. ++..|+++|.+|++++.+....+.+.+... ....++.++.+|+.+.+ +. -++
T Consensus 35 ~~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~---~~~~~v~~~~~d~~~~~-----~~-~~f 102 (246)
T d1y8ca_ 35 NLVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFR---SQGLKPRLACQDISNLN-----IN-RKF 102 (246)
T ss_dssp TCCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHH---HTTCCCEEECCCGGGCC-----CS-CCE
T ss_pred CCCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhcccccc---ccCccceeeccchhhhc-----cc-ccc
Confidence 3567899999986553 677888999999999986543222222211 12347899999987643 12 256
Q ss_pred cEEEEccc
Q 043169 167 THVMHLAA 174 (421)
Q Consensus 167 d~vi~~Ag 174 (421)
|+|+...+
T Consensus 103 D~i~~~~~ 110 (246)
T d1y8ca_ 103 DLITCCLD 110 (246)
T ss_dssp EEEEECTT
T ss_pred cccceeee
Confidence 99987544
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.27 E-value=0.35 Score=40.91 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=29.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNN 125 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~ 125 (421)
++|+|.|| |..|..+|..|.+.|. +|.++.++..
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 58999997 9999999999999995 8999988543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=87.19 E-value=1.2 Score=38.82 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=50.9
Q ss_pred CCCCEEE-EEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhc-c
Q 043169 88 SGGMSVL-VTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDA-V 164 (421)
Q Consensus 88 ~~~k~vl-ITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~-~ 164 (421)
..|++|| +..++|+++-+ +++.|+ +|+.++.+....+-+.+..........+++++.+|+.+ .++.+.+. .
T Consensus 143 ~~g~~VLdlf~~~G~~sl~----aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~--~l~~~~~~~~ 216 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVA----AAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD--YFKYARRHHL 216 (317)
T ss_dssp TBTCEEEEETCTTTHHHHH----HHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH--HHHHHHHTTC
T ss_pred hCCCceeecCCCCcHHHHH----HHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHH--HHHHHHhhcC
Confidence 3688888 55666766643 446776 69999987664444444433333344678999999853 33443332 3
Q ss_pred CCcEEEEcc
Q 043169 165 AFTHVMHLA 173 (421)
Q Consensus 165 ~~d~vi~~A 173 (421)
++|+||...
T Consensus 217 ~fD~Ii~DP 225 (317)
T d2b78a2 217 TYDIIIIDP 225 (317)
T ss_dssp CEEEEEECC
T ss_pred CCCEEEEcC
Confidence 679999875
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=86.88 E-value=0.47 Score=39.01 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
..|++||-.|+.+|--..+..++...+.+|++++.+++..+.+.+.. ....-.++.++.+|..+. ......+|
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~--~~~~~~n~~~~~~d~~~~-----~~~~~~fD 146 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV--ERLGIENVIFVCGDGYYG-----VPEFSPYD 146 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH--HHTTCCSEEEEESCGGGC-----CGGGCCEE
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhH--hhhcccccccccCchHHc-----cccccchh
Confidence 36789998886554444444444455678999998654333332222 222346778888886531 12233569
Q ss_pred EEEEccccc
Q 043169 168 HVMHLAAQA 176 (421)
Q Consensus 168 ~vi~~Ag~~ 176 (421)
.|+.+++..
T Consensus 147 ~I~~~~~~~ 155 (213)
T d1dl5a1 147 VIFVTVGVD 155 (213)
T ss_dssp EEEECSBBS
T ss_pred hhhhhccHH
Confidence 999888753
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=86.85 E-value=0.31 Score=39.37 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=28.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCC
Q 043169 91 MSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFN 124 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~ 124 (421)
|+|+|.|| |++|-++|..|.+.+ .+|+++.|..
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 68999997 899999999998874 5788888754
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.84 E-value=0.84 Score=33.40 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=28.4
Q ss_pred CEEEEEcCC---ChhHHHHHHHHHHCCCcEEEEeC
Q 043169 91 MSVLVTGAA---GFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 91 k~vlITG~s---G~iG~~l~~~L~~~g~~V~~~~r 122 (421)
|+|.|.|+| +-.|..+.+.|.+.|++|+.+..
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP 36 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNP 36 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcc
Confidence 679999988 66999999999999999988864
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=86.66 E-value=0.27 Score=42.11 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCChhHHHH-----HHHHHHCCCcEEEEeCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHV-----SLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l-----~~~L~~~g~~V~~~~r~~ 124 (421)
..+++|+|+.|-||+|+.+ +..|+++|++|.+++-+.
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp 58 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP 58 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4678899998899999976 788999999999999864
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=86.39 E-value=0.62 Score=36.04 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=25.2
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
+|-+.|- |-+|..+++.|++.|+.| +.+|+.
T Consensus 2 kIg~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~ 32 (156)
T d2cvza2 2 KVAFIGL-GAMGYPMAGHLARRFPTL-VWNRTF 32 (156)
T ss_dssp CEEEECC-STTHHHHHHHHHTTSCEE-EECSST
T ss_pred eEEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCH
Confidence 4778885 999999999999998866 566644
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=86.28 E-value=0.37 Score=41.94 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
+.-.|+|.|| |.-|...+.+|.++|.+|+++.+..+
T Consensus 6 ~~~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 6 EEVDVLVVGA-GFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp SEEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 4557999998 99999999999999999999988554
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=86.27 E-value=0.41 Score=42.22 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC--CcEEEEeCCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRG--DGVVGLDNFNN 125 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g--~~V~~~~r~~~ 125 (421)
..|+|+|.|| |.-|...|..|+++| ++|+++.|+..
T Consensus 3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 4689999997 999999999999887 59999998653
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=86.27 E-value=0.32 Score=35.14 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
..||+|+|.|+ |--|..++.+|++.+.+|+...|+..
T Consensus 30 f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~~ 66 (107)
T d2gv8a2 30 FVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLGG 66 (107)
T ss_dssp GTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred cCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecCc
Confidence 68999999996 89999999999999888777777543
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.82 E-value=0.44 Score=39.29 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
..+.+||..|+.+|--.++...|. |.+|+.+.++.+-.+.+.+ ......-.++.++.+|..+- .....++|
T Consensus 77 ~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~--~l~~~g~~nv~~~~gd~~~g-----~~~~~pfD 147 (215)
T d1jg1a_ 77 KPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKR--NLERAGVKNVHVILGDGSKG-----FPPKAPYD 147 (215)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHH--HHHHTTCCSEEEEESCGGGC-----CGGGCCEE
T ss_pred CccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHH--HHHHcCCceeEEEECccccC-----CcccCcce
Confidence 367789988876555556665665 4679999885432222221 22223447899999998641 22334679
Q ss_pred EEEEcccccC
Q 043169 168 HVMHLAAQAG 177 (421)
Q Consensus 168 ~vi~~Ag~~~ 177 (421)
.|+-.++...
T Consensus 148 ~Iiv~~a~~~ 157 (215)
T d1jg1a_ 148 VIIVTAGAPK 157 (215)
T ss_dssp EEEECSBBSS
T ss_pred eEEeeccccc
Confidence 9988887643
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.77 E-value=0.92 Score=34.40 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=30.5
Q ss_pred CCCEEEEEcCC---ChhHHHHHHHHHHCCCcEEEEeC
Q 043169 89 GGMSVLVTGAA---GFVGTHVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 89 ~~k~vlITG~s---G~iG~~l~~~L~~~g~~V~~~~r 122 (421)
+.|+|.|.|+| +-.|..+++.|.+.|++|+.+..
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP 54 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNP 54 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECC
Confidence 46899999998 68999999999999999998865
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.72 E-value=0.36 Score=40.20 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=28.3
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFN 124 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~ 124 (421)
+|+|.|| |.-|...|..|+++|+ +|+++.++.
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 5899997 9999999999999996 799998744
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.27 E-value=0.6 Score=38.67 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCh-hHHHHHHHHHHCC----CcEEEEeCCCCCCChhHHHHHH---HhhcCCceEEEEcccCCHHHHHHH
Q 043169 89 GGMSVLVTGAAGF-VGTHVSLALKKRG----DGVVGLDNFNNYYDPSLKKARK---ALLNNHGVFVIEGDINDAKLLAKL 160 (421)
Q Consensus 89 ~~k~vlITG~sG~-iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~v~~~~~Dl~d~~~~~~~ 160 (421)
.+.+||..|+.+| .-..+++.+...| .+|+.++++.+-.+.+.+.... ....-.++.++.+|..+- .
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~-----~ 154 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG-----Y 154 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC-----C
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccc-----c
Confidence 5789999996554 4444454555555 4899998855433333222111 112235789999997531 1
Q ss_pred hhccCCcEEEEccccc
Q 043169 161 FDAVAFTHVMHLAAQA 176 (421)
Q Consensus 161 ~~~~~~d~vi~~Ag~~ 176 (421)
.....+|.|+-.++..
T Consensus 155 ~~~~~fD~Iiv~~a~~ 170 (223)
T d1r18a_ 155 PPNAPYNAIHVGAAAP 170 (223)
T ss_dssp GGGCSEEEEEECSCBS
T ss_pred ccccceeeEEEEeech
Confidence 2233679999888764
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=84.88 E-value=0.47 Score=39.58 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=29.0
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCC
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNN 125 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~ 125 (421)
|+|.|| |-.|...|..|+++|++|.++.+...
T Consensus 5 ViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 5 VIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 899997 99999999999999999999988543
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.75 E-value=0.43 Score=41.74 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=28.3
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
|+|.|| |.-|...|.+|+++|++|+++.+++
T Consensus 2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 789997 9999999999999999999998744
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=84.54 E-value=3.5 Score=32.54 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=48.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcEEEEcccccC
Q 043169 98 AAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAG 177 (421)
Q Consensus 98 ~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~vi~~Ag~~~ 177 (421)
||-|-|.|.. .+++++-+|+++||+.. +..... .....++.++..+..+.+........-++|.|+---|+..
T Consensus 25 ~T~G~GGhs~-~iL~~~~~viaiD~D~~----ai~~a~--~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs 97 (182)
T d1wg8a2 25 ATLGGAGHAR-GILERGGRVIGLDQDPE----AVARAK--GLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSS 97 (182)
T ss_dssp TTCTTSHHHH-HHHHTTCEEEEEESCHH----HHHHHH--HTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCH
T ss_pred eCCCCcHHHH-HHhcccCcEEEEhhhhh----HHHHHh--hccccceeEeehHHHHHHHHHHHcCCCccCEEEEEccCCH
Confidence 4455555654 44556679999999542 222222 2345789999999998776655544345799998888865
Q ss_pred c
Q 043169 178 V 178 (421)
Q Consensus 178 ~ 178 (421)
.
T Consensus 98 ~ 98 (182)
T d1wg8a2 98 F 98 (182)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.95 E-value=0.49 Score=39.25 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHh---hcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKAL---LNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
..|.+||-.|+.+|--.++..++.....+|+.++++.+-.+.+.+...... ....++.++.+|..+. .....
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~-----~~~~~ 149 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG-----YAEEA 149 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC-----CGGGC
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc-----cchhh
Confidence 367899999988777777777777778899999986654444333332211 2235778888887531 12233
Q ss_pred CCcEEEEccccc
Q 043169 165 AFTHVMHLAAQA 176 (421)
Q Consensus 165 ~~d~vi~~Ag~~ 176 (421)
.+|.|+.+++..
T Consensus 150 ~fD~I~~~~~~~ 161 (224)
T d1i1na_ 150 PYDAIHVGAAAP 161 (224)
T ss_dssp CEEEEEECSBBS
T ss_pred hhhhhhhhcchh
Confidence 679999888753
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=83.91 E-value=0.5 Score=36.67 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=26.5
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
+|+|.|| |++|-++|..|. ++.+|.++.+..
T Consensus 2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence 6899997 999999999985 578999998754
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=83.87 E-value=0.79 Score=35.99 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHC-CCcEEEEeC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKR-GDGVVGLDN 122 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~-g~~V~~~~r 122 (421)
+..+|.|.|+ |.+|+..++.|.+. +.++++++.
T Consensus 2 ~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~ 35 (170)
T d1f06a1 2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFS 35 (170)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred CcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEe
Confidence 3467899995 99999999999876 577776544
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.83 E-value=0.56 Score=38.31 Aligned_cols=76 Identities=22% Similarity=0.204 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
++.+||=.||..|. ++..|++.|++|+++|.+.+..+.+++... .....+.++.+|..+.. +....+|+
T Consensus 37 ~~~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~---~~~~~~~~~~~d~~~l~-----~~~~~fD~ 105 (226)
T d1ve3a1 37 KRGKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAK---SRESNVEFIVGDARKLS-----FEDKTFDY 105 (226)
T ss_dssp SCCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCCEEEECCTTSCC-----SCTTCEEE
T ss_pred CCCEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhc---ccccccccccccccccc-----ccCcCceE
Confidence 34579999985543 556788899999999986543322222111 12356788888887632 22235699
Q ss_pred EEEcccc
Q 043169 169 VMHLAAQ 175 (421)
Q Consensus 169 vi~~Ag~ 175 (421)
|+.+...
T Consensus 106 I~~~~~l 112 (226)
T d1ve3a1 106 VIFIDSI 112 (226)
T ss_dssp EEEESCG
T ss_pred EEEecch
Confidence 8877654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=82.31 E-value=2.2 Score=37.08 Aligned_cols=80 Identities=24% Similarity=0.123 Sum_probs=48.0
Q ss_pred CCCCEEE-EEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhh-ccC
Q 043169 88 SGGMSVL-VTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFD-AVA 165 (421)
Q Consensus 88 ~~~k~vl-ITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~-~~~ 165 (421)
.+|++|| +..|+|+++.+ +++.+.+|+.++.+....+.+.+.... ..-.++.++.+|..+... .+.+ ..+
T Consensus 144 ~~g~rVLDl~~gtG~~s~~----~a~g~~~V~~vD~s~~al~~a~~n~~~--ngl~~~~~i~~d~~~~~~--~~~~~~~~ 215 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALH----LALGFREVVAVDSSAEALRRAEENARL--NGLGNVRVLEANAFDLLR--RLEKEGER 215 (318)
T ss_dssp CCEEEEEEETCTTTHHHHH----HHHHEEEEEEEESCHHHHHHHHHHHHH--TTCTTEEEEESCHHHHHH--HHHHTTCC
T ss_pred hCCCeeeccCCCCcHHHHH----HHhcCCcEEeecchHHHHHHHHHHHHH--cCCCCcceeeccHHHHhh--hhHhhhcC
Confidence 4788999 55556666544 345578999999866433333322222 222468899998865332 2222 235
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
+|+||.+.-.
T Consensus 216 fD~Vi~DpP~ 225 (318)
T d1wxxa2 216 FDLVVLDPPA 225 (318)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEEcCCc
Confidence 7999988643
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=82.19 E-value=0.44 Score=38.77 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=26.3
Q ss_pred CEEEEEcCCChhHHH-----HHHHHHHCCCcEEEEe
Q 043169 91 MSVLVTGAAGFVGTH-----VSLALKKRGDGVVGLD 121 (421)
Q Consensus 91 k~vlITG~sG~iG~~-----l~~~L~~~g~~V~~~~ 121 (421)
|+++|||-+.|+|+. |+..|+++|++|..++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 789999976699875 5788889999999886
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.15 E-value=0.99 Score=34.82 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCc-EEEEeCCC
Q 043169 89 GGMSVLVTGAAGFVGTHVSLALKKRGDG-VVGLDNFN 124 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l~~~L~~~g~~-V~~~~r~~ 124 (421)
-+++|+|.|| |..|-..|..+.+.|++ |+++.|..
T Consensus 44 ~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 44 IRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 4567999987 99999999999999975 77887754
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=82.03 E-value=0.64 Score=40.59 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=22.5
Q ss_pred CEEEEEcCCChhHH-----HHHHHHHHCCCcEEEEeC
Q 043169 91 MSVLVTGAAGFVGT-----HVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 91 k~vlITG~sG~iG~-----~l~~~L~~~g~~V~~~~r 122 (421)
|+|+|++|..| |. +|+++|.++|++|..++.
T Consensus 1 kkili~~~GtG-GHv~~a~al~~~L~~~G~eV~~i~~ 36 (351)
T d1f0ka_ 1 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGT 36 (351)
T ss_dssp CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CEEEEEcCCcH-HHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 57777765223 43 488999999999988774
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.81 E-value=0.73 Score=37.00 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=46.7
Q ss_pred CCCCEEEEEcC-CChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCC
Q 043169 88 SGGMSVLVTGA-AGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAF 166 (421)
Q Consensus 88 ~~~k~vlITG~-sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 166 (421)
..+++||=.|+ +|.++ ..|++.+.+|++++.+....+.+.+..........+++++.+|+.+. +.+-.+
T Consensus 51 ~~~~~VLDiGcG~G~~~----~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~------~~~~~f 120 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIG----IALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN------VKDRKY 120 (194)
T ss_dssp CTTCEEEEETCTTSHHH----HHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT------CTTSCE
T ss_pred CCCCeEEEEeecCChhH----HHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh------hccCCc
Confidence 35778886664 44444 45567788999999865433333222222223345689999998642 223356
Q ss_pred cEEEEccc
Q 043169 167 THVMHLAA 174 (421)
Q Consensus 167 d~vi~~Ag 174 (421)
|+|+.+..
T Consensus 121 D~Ii~~~p 128 (194)
T d1dusa_ 121 NKIITNPP 128 (194)
T ss_dssp EEEEECCC
T ss_pred eEEEEccc
Confidence 99998754
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=81.64 E-value=1.7 Score=36.53 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=47.6
Q ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCc
Q 043169 88 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFT 167 (421)
Q Consensus 88 ~~~k~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d 167 (421)
..|++||=.|+.+|+ ++..+++.|.+|++++.+....+.+++.... ...++.++.+|+.+ .+..-++|
T Consensus 119 ~~g~~VLDiGcGsG~---l~i~aa~~g~~V~gvDis~~av~~A~~na~~---n~~~~~~~~~d~~~------~~~~~~fD 186 (254)
T d2nxca1 119 RPGDKVLDLGTGSGV---LAIAAEKLGGKALGVDIDPMVLPQAEANAKR---NGVRPRFLEGSLEA------ALPFGPFD 186 (254)
T ss_dssp CTTCEEEEETCTTSH---HHHHHHHTTCEEEEEESCGGGHHHHHHHHHH---TTCCCEEEESCHHH------HGGGCCEE
T ss_pred CccCEEEEcccchhH---HHHHHHhcCCEEEEEECChHHHHHHHHHHHH---cCCceeEEeccccc------cccccccc
Confidence 478999988876554 3446778899999999977644444333222 23456778877532 33334679
Q ss_pred EEEEc
Q 043169 168 HVMHL 172 (421)
Q Consensus 168 ~vi~~ 172 (421)
+|+.|
T Consensus 187 ~V~an 191 (254)
T d2nxca1 187 LLVAN 191 (254)
T ss_dssp EEEEE
T ss_pred hhhhc
Confidence 99876
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=81.57 E-value=2 Score=33.24 Aligned_cols=77 Identities=17% Similarity=0.044 Sum_probs=42.1
Q ss_pred CEEEEEcCCChhHHHHHHH-HHHC-----CCcEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhcc
Q 043169 91 MSVLVTGAAGFVGTHVSLA-LKKR-----GDGVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAV 164 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~-L~~~-----g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~ 164 (421)
|+|.|.|| |.+|...+-. |++. +.++++.|.+.++.+... ... .........+.. . ++ ..+.++++
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~-d~~-~~~~~~~~~~~~-t-~~---~~~~l~~a 72 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFV-KRLVKDRFKVLI-S-DT---FEGAVVDA 72 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHH-HHHHTTSSEEEE-C-SS---HHHHHTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHH-HHH-HhhhccCceEEE-e-cC---cccccCCC
Confidence 57899998 5466555533 3321 358999998654332211 111 111122233222 1 22 24567777
Q ss_pred CCcEEEEcccccC
Q 043169 165 AFTHVMHLAAQAG 177 (421)
Q Consensus 165 ~~d~vi~~Ag~~~ 177 (421)
|+||..||...
T Consensus 73 --DvVVita~~~~ 83 (162)
T d1up7a1 73 --KYVIFQFRPGG 83 (162)
T ss_dssp --SEEEECCCTTH
T ss_pred --CEEEEecccCC
Confidence 99999999753
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=81.33 E-value=0.68 Score=41.09 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=27.7
Q ss_pred EEEEcCCChhHHHHHHHHHHCCCcEEEEeCC
Q 043169 93 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNF 123 (421)
Q Consensus 93 vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~ 123 (421)
|+|.|+ |+-|..+|.+|++.|++|.++.+-
T Consensus 5 VIVVGs-G~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 5 AVVIGT-GYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEeCc-CHHHHHHHHHHHHCcCeEEEEecC
Confidence 789994 999999999999999999999873
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=81.16 E-value=0.69 Score=41.72 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=24.7
Q ss_pred CEEEEEcC------CChhH---HHHHHHHHHCCCcEEEEeC
Q 043169 91 MSVLVTGA------AGFVG---THVSLALKKRGDGVVGLDN 122 (421)
Q Consensus 91 k~vlITG~------sG~iG---~~l~~~L~~~g~~V~~~~r 122 (421)
|+||+.+. +||+| .+|+++|+++||+|.+++.
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp 41 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 41 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 56777664 47776 5679999999999998863
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=80.74 E-value=1.3 Score=35.67 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=44.9
Q ss_pred CCCCCEEEEEcCCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccC
Q 043169 87 RSGGMSVLVTGAAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVA 165 (421)
Q Consensus 87 ~~~~k~vlITG~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 165 (421)
++.||+||=.|+..| .++..++..|. +|++++.+.. +.+..+ ....++.++.+|+.+.. -+
T Consensus 46 dl~Gk~VLDlGcGtG---~l~i~a~~~ga~~V~~vDid~~----a~~~ar---~N~~~~~~~~~D~~~l~--------~~ 107 (197)
T d1ne2a_ 46 NIGGRSVIDAGTGNG---ILACGSYLLGAESVTAFDIDPD----AIETAK---RNCGGVNFMVADVSEIS--------GK 107 (197)
T ss_dssp SSBTSEEEEETCTTC---HHHHHHHHTTBSEEEEEESCHH----HHHHHH---HHCTTSEEEECCGGGCC--------CC
T ss_pred CCCCCEEEEeCCCCc---HHHHHHHHcCCCcccccccCHH----HHHHHH---HccccccEEEEehhhcC--------Cc
Confidence 368999998886544 23345677885 6999997432 222111 23367899999986532 25
Q ss_pred CcEEEEcc
Q 043169 166 FTHVMHLA 173 (421)
Q Consensus 166 ~d~vi~~A 173 (421)
+|+||-|-
T Consensus 108 fD~Vi~NP 115 (197)
T d1ne2a_ 108 YDTWIMNP 115 (197)
T ss_dssp EEEEEECC
T ss_pred ceEEEeCc
Confidence 69999874
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=80.63 E-value=0.74 Score=39.73 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=29.0
Q ss_pred EEEEEcCCChhHHHHHHHHHHCCCcEEEEeCCC
Q 043169 92 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFN 124 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~~~g~~V~~~~r~~ 124 (421)
-|+|.|| |..|...|.+|+++|.+|+++.+..
T Consensus 18 DVlVIG~-G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGS-GGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4899996 9999999999999999999998744
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=80.47 E-value=1.3 Score=34.20 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCChhHHHH-HHHHHHC-CCcEEEEe
Q 043169 89 GGMSVLVTGAAGFVGTHV-SLALKKR-GDGVVGLD 121 (421)
Q Consensus 89 ~~k~vlITG~sG~iG~~l-~~~L~~~-g~~V~~~~ 121 (421)
+..+|.|.| +|+||..+ .+.|... ..+++.++
T Consensus 3 kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~ava 36 (157)
T d1nvmb1 3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMV 36 (157)
T ss_dssp SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred CCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEE
Confidence 346899999 89999865 4555444 35777764
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=80.27 E-value=0.76 Score=34.20 Aligned_cols=93 Identities=10% Similarity=0.048 Sum_probs=55.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHH-CCCcEEEEeCCCC-CCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHhhccCCcE
Q 043169 91 MSVLVTGAAGFVGTHVSLALKK-RGDGVVGLDNFNN-YYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLFDAVAFTH 168 (421)
Q Consensus 91 k~vlITG~sG~iG~~l~~~L~~-~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~d~ 168 (421)
.+|+|.|| |.+|.++++++.. .|++++++.-+.. .... .-.++.++.. +.+.++.++ .+++
T Consensus 4 ~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~----------~I~Gi~V~~~-----~~l~~~~~~-~i~i 66 (126)
T d2dt5a2 4 WGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGR----------PVRGGVIEHV-----DLLPQRVPG-RIEI 66 (126)
T ss_dssp EEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC----------EETTEEEEEG-----GGHHHHSTT-TCCE
T ss_pred ceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC----------EECCEEEecH-----HHHHHHHhh-cccE
Confidence 37999997 9999999998754 4788887654322 1111 1134555432 335555544 3455
Q ss_pred EEEcccccCchhhccCCchhhhhhHHHHHHHHHHHHhcCCCCeEEEEcccc
Q 043169 169 VMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSS 219 (421)
Q Consensus 169 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~riV~~SS~~ 219 (421)
.+-+... .....+++.|.+.|++ .|..++...
T Consensus 67 ai~~i~~------------------~~~~~I~d~l~~~gIk-~I~~f~~~~ 98 (126)
T d2dt5a2 67 ALLTVPR------------------EAAQKAADLLVAAGIK-GILNFAPVV 98 (126)
T ss_dssp EEECSCH------------------HHHHHHHHHHHHHTCC-EEEECSSSC
T ss_pred EEEeCCH------------------HHHHHHHHHHHHcCCC-EEeecCcee
Confidence 5544321 1234678888888875 777766544
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=80.26 E-value=0.84 Score=39.91 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=28.7
Q ss_pred EEEEEcCCChhHHHHHHHHH-----HCCCcEEEEeCCCC
Q 043169 92 SVLVTGAAGFVGTHVSLALK-----KRGDGVVGLDNFNN 125 (421)
Q Consensus 92 ~vlITG~sG~iG~~l~~~L~-----~~g~~V~~~~r~~~ 125 (421)
-|+|.|| |-.|..+|..|+ ++|++|+++.+.+.
T Consensus 9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGA-GPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECc-CHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 4899998 999999999997 47999999998654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=80.14 E-value=0.75 Score=40.44 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=46.4
Q ss_pred CCCEEEEEc-CCChhHHHHHHHHHHCCC-cEEEEeCCCCCCChhHHHHHHHhhcCCceEEEEcccCCHHHHHHHh-hccC
Q 043169 89 GGMSVLVTG-AAGFVGTHVSLALKKRGD-GVVGLDNFNNYYDPSLKKARKALLNNHGVFVIEGDINDAKLLAKLF-DAVA 165 (421)
Q Consensus 89 ~~k~vlITG-~sG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~-~~~~ 165 (421)
.|++||=.| |+|+++-++ ++.|+ +|+.++.+....+.+.+...... ...+++++.+|+.+. +..+. ++.+
T Consensus 145 ~g~~VLDl~~g~G~~si~~----a~~ga~~V~~vD~s~~al~~a~~N~~~ng-l~~~~~~~~~d~~~~--~~~~~~~~~~ 217 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHA----AIAGADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFEE--MEKLQKKGEK 217 (324)
T ss_dssp TTCEEEETTCTTTHHHHHH----HHTTCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHH--HHHHHHTTCC
T ss_pred CCCeeecccCcccchhhhh----hhcCCcEEEeecCCHHHHHHHHHHHHHcC-CCccceeeechhhhh--hHHHHhccCC
Confidence 588888554 455555443 46675 79999986543333322222211 124678899987642 23332 2336
Q ss_pred CcEEEEcccc
Q 043169 166 FTHVMHLAAQ 175 (421)
Q Consensus 166 ~d~vi~~Ag~ 175 (421)
+|+||.+.-.
T Consensus 218 fD~Vi~DpP~ 227 (324)
T d2as0a2 218 FDIVVLDPPA 227 (324)
T ss_dssp EEEEEECCCC
T ss_pred CCchhcCCcc
Confidence 7999987643
|