Citrus Sinensis ID: 043195

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGI
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEcccccccccccHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEcccccHcHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
masssssinmnpqikydvflsfrgrdvRHNFISHLNAALCRKKIETFIDdklnrgnqispslssaiegskISIVIFSKGYASSRWCLNELVKILEsknkygqivvpvfylvdpsdvrnqtgtigdSFLKLEERFKEKIDMLQTWRIAMREAanlsgfdshgi
Flexible Loop (DISEMBL)
masssssinmnpqIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIddklnrgnqispslssaiegsKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREaanlsgfdshgi
Low Complexity Region (SEG)
MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGI
Disordered region (IsUnstruct)
************QIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRG*********AIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMRE************
Disordered Region (DISOPRED)
***************YDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEER*****DMLQTWRIAMREAANLSGFDSHG*
Disordered Region (DISEMBL)
*********MNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGI
Disordered Region (DISPRO)
***********PQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.870	0.123	0.542	2e-38
O82500	1095	Putative disease resistan	no	no	0.888	0.131	0.503	8e-34
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.864	0.107	0.510	4e-32
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.876	0.345	0.401	2e-24
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.938	0.429	0.377	2e-22
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.901	0.372	0.418	2e-22
Q9SYC9	571	Vesicle-associated protei	no	no	0.820	0.232	0.350	5e-19
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.728	0.062	0.272	3e-07
Q9FL92	1372	Probable WRKY transcripti	no	no	0.506	0.059	0.361	4e-06
Q9FHE5	332	Uncharacterized protein P	no	no	0.716	0.349	0.318	0.0005

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 98/142 (69%), Gaps = 1/142 (0%)

Query: 16  YDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIV 74
           YDVFLSFRG D R  F SHL   L  K I+TF DDK L  G  I   L  AIE S+ +IV
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 75  IFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERF 134
           +FS+ YA+SRWCLNELVKI+E K ++ Q V+P+FY VDPS VRNQ  +   +F + E ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 135 KEKIDMLQTWRIAMREAANLSG 156
           K+ ++ +Q WRIA+ EAANL G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  142 bits (358), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/161 (50%), Positives = 102/161 (63%), Gaps = 17/161 (10%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
           MASSSS+       +YDVF SFRG DVR+NF+SHL      K I TF DD + R + I  
Sbjct: 1   MASSSSN-----SWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGH 55

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
            L +AI  SKIS+V+FS+ YASS WCL+EL++I++ K + G  V+PVFY VDPSD+R QT
Sbjct: 56  ELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQT 115

Query: 121 GTIGDSFL-----KLEERFKEKIDMLQTWRIAMREAANLSG 156
           G  G SFL     K EER          WR A+ +AAN+ G
Sbjct: 116 GKFGMSFLETCCGKTEER-------QHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  137 bits (344), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 96/145 (66%), Gaps = 5/145 (3%)

Query: 15  KYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIV 74
           +YDVF SFRG DVR +F+SHL   L R K  TFIDD++ R   I P L SAI+ S+I+IV
Sbjct: 11  RYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGPELLSAIKESRIAIV 69

Query: 75  IFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERF 134
           IFSK YASS WCLNELV+I +      Q+V+P+F+ VD S+V+ QTG  G  F   EE  
Sbjct: 70  IFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVF---EETC 126

Query: 135 KEKI-DMLQTWRIAMREAANLSGFD 158
           K K  D  Q+W+ A+   A ++G+D
Sbjct: 127 KAKSEDEKQSWKQALAAVAVMAGYD 151

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 89/147 (60%), Gaps = 5/147 (3%)

Query: 8   INMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIE 67
           I   PQ    VF++FRG+D+R  F+S L  AL ++KI  FID++  RG  +  SL   I 
Sbjct: 18  IPTGPQ----VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIG 72

Query: 68  GSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSF 127
            SKI++VIFS+GY  S WC++ELVKI E  ++   I++P+FY +D   V++ TG  GD+F
Sbjct: 73  ESKIALVIFSEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNF 132

Query: 128 LKLEERFKEKIDMLQTWRIAMREAANL 154
             L ++++ +   L  W  A+     L
Sbjct: 133 WDLVDKYQPEPKKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 7/159 (4%)

Query: 1   MASSSS--SINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQI 58
           MA+SSS       PQ    VF++FRG+D+R+ F+S L  A+    I  FID     G  +
Sbjct: 1   MAASSSVRPTPTGPQ----VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDL 56

Query: 59  SPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRN 118
             +L   I+ S++++VIFSK Y SS WCL+EL +I +  N+ G   +P+FY + PS V  
Sbjct: 57  V-NLFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLE 115

Query: 119 QTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGF 157
             G  GD+F  L+E++K   +  Q W+ A+     L G 
Sbjct: 116 LKGGFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGL 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 88/148 (59%), Gaps = 2/148 (1%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
           MASSSS +   P     VF+ FRG DVR +FIS L  AL    I  FID+    G++++ 
Sbjct: 1   MASSSSVVKPTP-TGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA- 58

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           +L + IE S++++VIFS  +  S  CLNEL KI E K++   IV+P+FY V PS V+   
Sbjct: 59  NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLE 118

Query: 121 GTIGDSFLKLEERFKEKIDMLQTWRIAM 148
           G  GD+F  LE   +  + + Q W+ A+
Sbjct: 119 GKFGDNFRALERNNRHMLPITQKWKEAL 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 81/134 (60%), Gaps = 1/134 (0%)

Query: 15  KYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIV 74
           +Y VF++FRG ++R++F+  L  A+  +KI  F D+   RG  ++  L   IE S++++ 
Sbjct: 357 QYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-YLFRRIEESRVAVA 415

Query: 75  IFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERF 134
           IFS+ Y  S WCL+ELVK+ E   +   +VVPVFY ++ +  +   G  GD+   LE  +
Sbjct: 416 IFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGAFGDNLRNLEWEY 475

Query: 135 KEKIDMLQTWRIAM 148
           + + + +Q W+ A+
Sbjct: 476 RSEPERIQKWKEAL 489

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 25/143 (17%)

Query: 16  YDVFLSFRGRDV-RHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIV 74
           YDV + +   D+   +FISHL A+LCR+ I  +  +K N  +        A+   ++ I+
Sbjct: 668 YDVVIRYGRADISNEDFISHLRASLCRRGISVY--EKFNEVD--------ALPKCRVLII 717

Query: 75  IFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERF 134
           + +  Y  S      L+ ILE ++   ++V P+FY + P D    +        K  ERF
Sbjct: 718 VLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSPYDFVCNS--------KNYERF 764

Query: 135 KEKIDMLQTWRIAMREAANLSGF 157
             + D  + W+ A++E   + G+
Sbjct: 765 YLQ-DEPKKWQAALKEITQMPGY 786

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 12/94 (12%)

Query: 26  DVRHNFISHLNAALCRKKI-ETFID--DKLNRGNQISPSLSSAIEGSKISIVIFSKGYAS 82
           +VR++F+SHL+ AL RK + + FID  D L+  +Q      S +E +++S++I       
Sbjct: 15  EVRYSFVSHLSKALQRKGVNDVFIDSDDSLSNESQ------SMVERARVSVMILPGNRTV 68

Query: 83  SRWCLNELVKILESKNKYGQIVVPVFYLVDPSDV 116
           S   L++LVK+L+ +    Q+VVPV Y V  S+ 
Sbjct: 69  S---LDKLVKVLDCQKNKDQVVVPVLYGVRSSET 99

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis thaliana GN=PP2A7 PE=4 SV=1

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 22/138 (15%)

Query: 25  RDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSR 84
            DV    I+ L   L  K I  FID++  RG  +  +L   I+ SKIS+ IFS+    S+
Sbjct: 51  EDVSKGLINFLEPVLQNKNINVFIDEEEVRGKGLK-NLFKRIQDSKISLAIFSE----SK 105

Query: 85  WCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTW 144
              N+L+K  ES ++     +P+FY VD       TG + D    L+   K K D++ + 
Sbjct: 106 CDFNDLLKNNESADE----AIPIFYKVD------ATGDLAD----LQNSVKCKKDLINS- 150

Query: 145 RIAMREAANLSGFDSHGI 162
             A+ E + L    S G+
Sbjct: 151 --AVEEMSKLLANISVGV 166

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.932	0.134	0.655	3e-51
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.969	0.109	0.606	5e-49
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.969	0.106	0.593	1e-48
255564962	1091	TMV resistance protein N, putative [Rici	0.987	0.146	0.590	1e-47
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.969	0.125	0.618	1e-47
255564976	944	TMV resistance protein N, putative [Rici	0.981	0.168	0.610	2e-46
357486483	242	TMV resistance protein N [Medicago trunc	0.962	0.644	0.569	3e-46
223452603	257	TIR-NBS-LRR type disease resistance prot	0.969	0.610	0.556	4e-46
351725457	250	uncharacterized protein LOC100527494 [Gl	0.969	0.628	0.556	5e-46
351722793	299	TIR-NBS-LRR type disease resistance prot	0.913	0.494	0.560	6e-46

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 117/151 (77%)

Query: 12  PQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKI 71
           PQ KYDVFLSFRG D R  F+SHL AAL RK+I TFID KLNRG +ISPSL  AIE SK+
Sbjct: 11  PQEKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKL 70

Query: 72  SIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLE 131
           S+V+FS  YASS+WCL EL KILE K   GQ+V+PVFY VDPS VRNQTG+  D+F + +
Sbjct: 71  SVVVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHD 130

Query: 132 ERFKEKIDMLQTWRIAMREAANLSGFDSHGI 162
           +  KEK++ +  WR AMREAANLSG+DSH I
Sbjct: 131 QLLKEKMEKVLNWRAAMREAANLSGWDSHNI 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 124/160 (77%), Gaps = 3/160 (1%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
           MASSS+  +   + KYDVFLSFRG+D R+NF SHL  ALCRKKI+TFIDD+L RG +I+P
Sbjct: 1   MASSSAVAH---KWKYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEITP 57

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           +L   IE S+IS+VIFSK YASS WC++ELVKILE K  YGQIV+PVFY V+PSDV  QT
Sbjct: 58  ALLKTIEESRISVVIFSKNYASSPWCVDELVKILECKETYGQIVLPVFYHVNPSDVDEQT 117

Query: 121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
           G+ G++F +LE+ FK K+D +  WR  +  AA++SG+DS 
Sbjct: 118 GSFGNAFAELEKNFKGKMDKVPRWRADLTNAASISGWDSQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/160 (59%), Positives = 122/160 (76%), Gaps = 3/160 (1%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
           M SSS+   +  + KYDVFLSFRG+D R NF+SHL  ALCRK+I+TFIDDKL RG +I+ 
Sbjct: 1   MVSSSA---VAQKWKYDVFLSFRGKDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITG 57

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           +L   IE S+IS++IFS+ YASS WC++ELVKILE K  YGQIV+PVFY VDPSDV  QT
Sbjct: 58  ALLRTIEESRISVIIFSRNYASSPWCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQT 117

Query: 121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
           G+ G++F +LE  FK+K+D +  WR  +  AAN+SG+DS 
Sbjct: 118 GSFGNAFAELERNFKQKMDKVPRWRADLTSAANISGWDSQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564962|ref|XP_002523474.1| TMV resistance protein N, putative [Ricinus communis] gi|223537302|gb|EEF38933.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/161 (59%), Positives = 120/161 (74%), Gaps = 1/161 (0%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQIS 59
           M   +SS N+ P+  YDVFLSFRG D RHN ISHL AAL RK + TFIDD  L+RG +IS
Sbjct: 1   MPPPTSSSNVPPKTSYDVFLSFRGADTRHNLISHLYAALSRKHVTTFIDDHGLDRGEEIS 60

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
           P+L  AIE SKIS++IFS+ YASS+WCL+ELVKI+E      + V+PVFY VDPSDVR Q
Sbjct: 61  PTLLKAIEESKISVIIFSENYASSKWCLDELVKIMECMKTMSRNVLPVFYHVDPSDVRKQ 120

Query: 120 TGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
           TG+ G +F  ++E+FK  +D +Q W  A+ EAANLSG+DS+
Sbjct: 121 TGSFGQAFGVVKEKFKGSMDRVQRWSTALTEAANLSGWDSN 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/160 (61%), Positives = 120/160 (75%), Gaps = 3/160 (1%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
           MASSSS  +   + KYDVFLSFRG D R+NF SHL  ALCRKKI+TFIDD L RG +I+P
Sbjct: 1   MASSSSVAH---KRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITP 57

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           +L   IE S+IS+VIFSK YASS WC++ELVKILE K   GQIV+PVFY VDPSDV  QT
Sbjct: 58  ALLKKIEESRISVVIFSKNYASSPWCVDELVKILECKETCGQIVLPVFYHVDPSDVDEQT 117

Query: 121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
           G+ G++F +LE  FK K+D +  WR  M  AA++SG+DS 
Sbjct: 118 GSFGNAFSELENIFKGKMDKVPRWRADMTYAASISGWDSQ 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 122/159 (76%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
           MASSSSS + +PQ+KYDVF+SFRG D R NF SHL AAL +K+I+ F+DDKL+RG +IS 
Sbjct: 1   MASSSSSASFDPQLKYDVFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISA 60

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           +L   IE S +S++IFS+ YA S WCL+ELVKILE K   GQIV+PVFY VDPSDV  Q 
Sbjct: 61  ALVKVIEESMVSVIIFSENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQK 120

Query: 121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDS 159
           G  G +F++ E+ FKE+ID LQ WR A+ EAAN+SG+ S
Sbjct: 121 GGFGAAFIEHEKCFKERIDKLQKWRAALTEAANISGWSS 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486483|ref|XP_003613529.1| TMV resistance protein N [Medicago truncatula] gi|355514864|gb|AES96487.1| TMV resistance protein N [Medicago truncatula] gi|388497304|gb|AFK36718.1| unknown [Medicago truncatula] gi|388511843|gb|AFK43983.1| unknown [Medicago truncatula]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 119/158 (75%), Gaps = 2/158 (1%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
           MA S+SS    PQ K++VFLSFRG D R+ F SHL+A L R  + T+ID  L RG++IS 
Sbjct: 1   MAWSTSS--NTPQQKHEVFLSFRGEDTRYTFTSHLHATLTRLDVGTYIDYHLQRGDEISS 58

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           +L  AIE + +S+V+FSK Y +S+WCL+ELVKILE K   GQIV+P+FY ++PSDVRNQT
Sbjct: 59  ALLRAIEEASLSVVVFSKNYGNSKWCLDELVKILECKKMRGQIVLPIFYDIEPSDVRNQT 118

Query: 121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFD 158
           G+  D+F+K EERF   ++ +Q WR A+REAANLSG+D
Sbjct: 119 GSYADAFVKHEERFHGNLERVQKWREALREAANLSGWD 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223452603|gb|ACM89628.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 120/158 (75%), Gaps = 1/158 (0%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
           MA S+SS +  P  K++VFLSFRG D R+ F  HL+A+L R ++ T+ID  L RG +IS 
Sbjct: 1   MAWSTSS-SSTPHQKHEVFLSFRGEDTRYTFTGHLHASLTRLQVNTYIDYNLQRGEEISS 59

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           SL  AIE +K+S+V+FSK Y +S+WCL+EL+KILE KN  GQIV+P+FY +DPS VRNQT
Sbjct: 60  SLLRAIEEAKLSVVVFSKNYGNSKWCLDELLKILECKNMRGQIVLPIFYDIDPSHVRNQT 119

Query: 121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFD 158
           GT  ++F K E+  + ++D +Q WR+A+REAANLSG+D
Sbjct: 120 GTYAEAFAKHEKHLQGQMDKVQKWRVALREAANLSGWD 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725457|ref|NP_001236837.1| uncharacterized protein LOC100527494 [Glycine max] gi|255632476|gb|ACU16588.1| unknown [Glycine max]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/158 (55%), Positives = 120/158 (75%), Gaps = 1/158 (0%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
           MA S+SS +  P  K++VFLSFRG D R+ F  HL+A+L R ++ T+ID  L RG +IS 
Sbjct: 1   MAWSTSS-SSTPHQKHEVFLSFRGEDTRYTFTGHLHASLTRLQVNTYIDYNLQRGEEISS 59

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           SL  AIE +K+S+V+FSK Y +S+WCL+EL+KILE KN  GQIV+P+FY +DPS VRNQT
Sbjct: 60  SLLRAIEEAKLSVVVFSKNYGNSKWCLDELLKILECKNMRGQIVLPIFYDIDPSHVRNQT 119

Query: 121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFD 158
           GT  ++F K E+  + ++D +Q WR+A+REAANLSG+D
Sbjct: 120 GTYTEAFAKHEKHLQGQMDKVQKWRVALREAANLSGWD 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 116/148 (78%)

Query: 11  NPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSK 70
            PQ  +DVFLSFRG D R+ F SHL AAL R +++T+ID++L RG++ISPSL  AI+ +K
Sbjct: 14  TPQQVHDVFLSFRGEDTRYTFTSHLYAALTRLQVKTYIDNELERGDEISPSLLRAIDDAK 73

Query: 71  ISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKL 130
           +++++FS+ YASSRWCL+ELVKI+E K K GQI+VPVFY VDP+ VR+QTG+ G +F   
Sbjct: 74  VAVIVFSENYASSRWCLDELVKIMECKRKNGQIIVPVFYHVDPTHVRHQTGSYGHAFAMH 133

Query: 131 EERFKEKIDMLQTWRIAMREAANLSGFD 158
           E+RF   ++ +QTWR+ + E AN+SG+D
Sbjct: 134 EQRFVGNMNKVQTWRLVLGEVANISGWD 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.907	0.469	0.486	9.2e-36
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.938	0.132	0.535	3.1e-35
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.950	0.106	0.537	2.1e-32
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.962	0.130	0.45	4.1e-32
TAIR|locus:2100182	1007	AT3G44400 [Arabidopsis thalian	0.962	0.154	0.443	6.4e-32
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.870	0.512	0.510	9.8e-32
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.938	0.123	0.522	1.5e-31
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.962	0.125	0.443	1.5e-31
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.870	0.380	0.503	3.3e-31
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.870	0.118	0.524	6.2e-31

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 74/152 (48%), Positives = 107/152 (70%)

Query:     8 INMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIE 67
             +N +P++K+DVF+SFR +D R NF+SHL   L RK+I+TF+ D+L    +   SL  AIE
Sbjct:     1 MNSSPKMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLK-AIE 59

Query:    68 GSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSF 127
              SKIS+++FS+ +  SRWCL+E+V IL+ K K+GQIV+PV Y VDP D+ NQTG+ GD+F
Sbjct:    60 VSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAF 119

Query:   128 LKLEERFKEKIDMLQTWRIAMREAANLSGFDS 159
              K     ++K + LQ W+ +  EA NL G+ +
Sbjct:   120 AKR----RDKAEQLQEWKDSFTEAINLPGWST 147

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 393 (143.4 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 84/157 (53%), Positives = 106/157 (67%)

Query:     1 MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQIS 59
             MASSSSS   +    YDVFLSFRG D R  F SHL   L  K I+TF DDK L  G  I 
Sbjct:     1 MASSSSSSRWS----YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIP 56

Query:    60 PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
               L  AIE S+ +IV+FS+ YA+SRWCLNELVKI+E K ++ Q V+P+FY VDPS VRNQ
Sbjct:    57 GELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQ 116

Query:   120 TGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSG 156
               +   +F + E ++K+ ++ +Q WRIA+ EAANL G
Sbjct:   117 KESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 2.1e-32, P = 2.1e-32
 Identities = 86/160 (53%), Positives = 104/160 (65%)

Query:     1 MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
             MA+SSSS     + +YDVF SF G DVR  F+SHL  AL  K I TFID  + R   I+P
Sbjct:     1 MAASSSS----GRRRYDVFPSFSGVDVRKTFLSHLIEALDGKSINTFIDHGIERSRTIAP 56

Query:    61 SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L SAI  ++ISIVIFSK YASS WCLNELV+I +  N  GQ+V+PVFY VDPS+VR QT
Sbjct:    57 ELISAIREARISIVIFSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQT 116

Query:   121 GTIGDSFLKLEERFKEKI--DMLQTWRIAMREAANLSGFD 158
             G  G  F K  E  K+K   D  Q W  A+ + AN++G D
Sbjct:   117 GEFGKVFEKTCEVSKDKQPGDQKQRWVQALTDIANIAGED 156

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 4.1e-32, P = 4.1e-32
 Identities = 72/160 (45%), Positives = 107/160 (66%)

Query:     1 MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
             + S ++S++ N   K+DVF SF G DVR  F+SH+  +  RK I+TFID+ + R   I P
Sbjct:    85 LPSPATSVSRN--WKHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGP 142

Query:    61 SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L  AI+GSKI+IV+ S+ YASS WCL+EL +I++ +   GQIV+ +FY VDP+D++ QT
Sbjct:   143 ELKEAIKGSKIAIVLLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVDPTDIKKQT 202

Query:   121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
             G  G +F K   R K K + ++ WR A+ + A ++G+ SH
Sbjct:   203 GEFGKAFTKTC-RGKPK-EQVERWRKALEDVATIAGYHSH 240

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2100182 AT3G44400 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 6.4e-32, P = 6.4e-32
 Identities = 71/160 (44%), Positives = 107/160 (66%)

Query:     1 MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
             + S ++S++ N   K+DVF SF G DVR  F+SH+  +  RK I+TFID+ + R   I P
Sbjct:    35 LPSPATSVSRN--WKHDVFPSFHGADVRRTFLSHIKESFRRKGIDTFIDNNIERSKSIGP 92

Query:    61 SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L  AI+GSKI+IV+ S+ YASS WCL+EL +I++ +   GQIV+ +FY V+P+D++ QT
Sbjct:    93 ELKEAIKGSKIAIVLLSRKYASSSWCLDELAEIMKCREMVGQIVMTIFYEVEPTDIKKQT 152

Query:   121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
             G  G +F K   R K K + ++ WR A+ + A ++G+ SH
Sbjct:   153 GEFGKAFTKTC-RGKTK-EHIERWRKALEDVATIAGYHSH 190

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 73/143 (51%), Positives = 95/143 (66%)

Query:    15 KYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISI 73
             KYDVFLSFRG D R NFIS L   L R+KI TF DDK L  G +ISP L  AIE SK ++
Sbjct:     8 KYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query:    74 VIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEER 133
             V+ S  YA+S WCL+ELVKI++ +NK    V+P+FY VDP  +R Q G + + F K E R
Sbjct:    68 VVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAR 127

Query:   134 FKEKIDMLQTWRIAMREAANLSG 156
              +E  + + +WR A+   A++SG
Sbjct:   128 -EEDHEKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 83/159 (52%), Positives = 103/159 (64%)

Query:     1 MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
             MASSSS         YDVF SF G DVR +F+SHL   L RK I TFID+ + R + I+P
Sbjct:     1 MASSSSR-----SWTYDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNNIERSHAIAP 55

Query:    61 SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L SAI  S ISIV+FSK YASS WCLNELV+I +   +  QIV+P+FY VDPSDVR QT
Sbjct:    56 DLLSAINNSMISIVVFSKKYASSTWCLNELVEIHKCYKELTQIVIPIFYEVDPSDVRKQT 115

Query:   121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDS 159
                G+ F K+    K + D+ Q W  A+ E A+++G DS
Sbjct:   116 REFGE-FFKVTCVGKTE-DVKQQWIEALEEVASIAGHDS 152

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 1.5e-31, P = 1.5e-31
 Identities = 71/160 (44%), Positives = 107/160 (66%)

Query:     1 MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
             + S ++S++ N   K+DVF SF G DVR  F+SH+  +  RK I+TFID+ + R   I P
Sbjct:    81 LPSLATSVSRN--WKHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGP 138

Query:    61 SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L  AI+GSKI+IV+ S+ YASS WCL+EL +I++ +   GQIV+ +FY V+P+D++ QT
Sbjct:   139 ELKEAIKGSKIAIVLLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVEPTDIKKQT 198

Query:   121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
             G  G +F K   R K K + ++ WR A+ + A ++G+ SH
Sbjct:   199 GEFGKAFTKTC-RGKPK-EQVERWRKALEDVATIAGYHSH 236

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 72/143 (50%), Positives = 94/143 (65%)

Query:    15 KYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISI 73
             KYDVFLSFRG D R NFIS L     R+KI TF DDK L  G +ISP L  AIE SK ++
Sbjct:     8 KYDVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query:    74 VIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEER 133
             V+ S  YA+S WCL+ELVKI++ +NK    V+P+FY VDP  +R Q G + + F K E R
Sbjct:    68 VVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAR 127

Query:   134 FKEKIDMLQTWRIAMREAANLSG 156
              +E  + + +WR A+   A++SG
Sbjct:   128 -EEDHEKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 6.2e-31, P = 6.2e-31
 Identities = 76/145 (52%), Positives = 99/145 (68%)

Query:    16 YDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDD-KLNRGNQISPSLSSAIEGSKISIV 74
             YDVF+SFRG DVR NF+SHL  +L R  I TF+DD +L RG  ISP L +AIE SKI IV
Sbjct:    17 YDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIV 76

Query:    75 IFSKGYASSRWCLNELVKILES-KNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEER 133
             + +K YASS WCL+ELV I++S KN    +V P+F  VDPSD+R Q G+   SF K   +
Sbjct:    77 VLTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSK--HK 134

Query:   134 FKEKIDMLQTWRIAMREAANLSGFD 158
                 ++ L+ WR A+ + AN+SG+D
Sbjct:   135 NSHPLNKLKDWREALTKVANISGWD 159

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01250017 tir-nbs-lrr resistance protein (1125 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-42
pfam01582	135	pfam01582, TIR, TIR domain	2e-40
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	4e-39
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	2e-15
pfam13676	102	pfam13676, TIR_2, TIR domain	1e-10

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  147 bits (373), Expect = 9e-42
 Identities = 74/159 (46%), Positives = 99/159 (62%), Gaps = 6/159 (3%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISP 60
            +SSSSS N      YDVF SF G DVR  F+SH    L RK I  F D+++ R   + P
Sbjct: 2   ASSSSSSRNWV----YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDP 57

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
            L  AI  S+I++V+FSK YASS WCLNEL++I+  K + GQ+V+PVFY +DPS VR QT
Sbjct: 58  ELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQT 117

Query: 121 GTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDS 159
           G  G++F K  +   E  D    W+ A+ + AN+ G+ S
Sbjct: 118 GDFGEAFEKTCQNKTE--DEKIQWKQALTDVANILGYHS 154

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  132 bits (334), Expect = 2e-40
 Identities = 61/135 (45%), Positives = 87/135 (64%), Gaps = 3/135 (2%)

Query: 18  VFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIF 76
           VF+SF G+D R  F+SHL   L  K I+  IDD+    G  I  +L  AIE S+ +IVIF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 77  SKGYASSRWCLNELVKILESKNKYG--QIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERF 134
           S  YASS WCL+ELV+I++   + G  ++++P+FY VDPSDVR Q+G  G +FLK  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 135 KEKIDMLQTWRIAMR 149
            +K D ++ W+ A+ 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  128 bits (325), Expect = 4e-39
 Identities = 57/142 (40%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 15  KYDVFLSFRGR-DVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISI 73
           +YDVF+S+ G+ DVR+ F+SHL   L    +  FIDD    G      +  AIE S+I+I
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAI 59

Query: 74  VIFSKGYASSRWCLNELVKILESKNKYGQI-VVPVFYLVDPSDVRNQTGTIGDSFLKLEE 132
           V+ S  YA S WCL+ELV  LE+  + G + V+P+FY V PSDVR Q G     F K   
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 133 RFKEKIDMLQTWRIAMREAANL 154
           ++ E  +  Q W+ A+    + 
Sbjct: 120 KWPED-EKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 69.5 bits (170), Expect = 2e-15
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 19/152 (12%)

Query: 11  NPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGS 69
           +     DVF++ RG D +    + L   L R  +  F+D+K +  G+++   ++SAI   
Sbjct: 22  SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNC 81

Query: 70  KISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLK 129
           K+ + +FS  Y  S +CL+EL  I+ESK +    V+P+F  V PS             L+
Sbjct: 82  KVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQ------------LR 125

Query: 130 LEERFKEKIDMLQTWRIAMREAANLSG--FDS 159
           + +      + ++ +  A+ EA    G  FDS
Sbjct: 126 VVDNGTCPDEEIRRFNWALEEAKYTVGLTFDS 157

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 54.9 bits (133), Expect = 1e-10
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 18  VFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFS 77
           VF+S+   D    +   L  AL    I  ++D  +  G      +  A+  + + +V+ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 78  KGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDV 116
             Y +S WC  E    LE     G+ ++PV   ++  ++
Sbjct: 59  PAYLASPWCRAEWGAALER----GKRLIPV--RLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN03194	187	putative disease resistance protein; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.94
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.94
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.79
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.08
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.68
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.03
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	96.98
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	94.93
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	91.23
COG4271	233	Predicted nucleotide-binding protein containing TI	90.12
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	89.35
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	81.79

>PLN03210 Resistant to P

Probab=100.00  E-value=1e-45  Score=348.26  Aligned_cols=155  Identities=48%  Similarity=0.786  Sum_probs=146.0

Q ss_pred             CCCCCCCCCCCCCceeeEEEeccccccccchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecCC
Q 043195            1 MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGY   80 (162)
Q Consensus         1 m~~~~~~~~~~~~~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y   80 (162)
                      ||+||||++   .++|||||||||+|+|++|++||+.+|.++||.+|.|+++++|+.|.+++.+||++|+++|||||++|
T Consensus         1 ~~~~~~~~~---~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y   77 (1153)
T PLN03210          1 MASSSSSSR---NWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY   77 (1153)
T ss_pred             CCCCCCCCC---CCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence            677665443   58999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHhhhcCCeeEeEEEeeCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccccccC
Q 043195           81 ASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH  160 (162)
Q Consensus        81 ~~S~wc~~El~~~~~~~~~~~~~viPVfy~v~p~dv~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~  160 (162)
                      ++|.||++||++|++|.++.+++|+||||+|+|+|||+|+|.||++|.+++++.  +.+++++||.||++||+++||+++
T Consensus        78 a~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~  155 (1153)
T PLN03210         78 ASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQ  155 (1153)
T ss_pred             ccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecC
Confidence            999999999999999999999999999999999999999999999999988764  478999999999999999999875

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=1.9e-45  Score=282.28  Aligned_cols=131  Identities=32%  Similarity=0.562  Sum_probs=121.6

Q ss_pred             CceeeEEEeccccccccchHHHHHHHHccCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHHHHH
Q 043195           13 QIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELV   91 (162)
Q Consensus        13 ~~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~   91 (162)
                      ..+|||||||+++|+|++|++||+.+|+++||++|+|+. +.+|+.|.+.|.+||++|+++|+||||+|++|.||++||+
T Consensus        24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~  103 (187)
T PLN03194         24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELA  103 (187)
T ss_pred             CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHH
Confidence            357999999999999999999999999999999999997 9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCeeEeEEEeeCCcccccc-cCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccccccC
Q 043195           92 KILESKNKYGQIVVPVFYLVDPSDVRNQ-TGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH  160 (162)
Q Consensus        92 ~~~~~~~~~~~~viPVfy~v~p~dv~~q-~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~  160 (162)
                      +|+++.    ..||||||+|+|+|||+| .+.             .+.+++++||.||++|++++|++++
T Consensus       104 ~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194        104 LIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             HHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCC
Confidence            999863    489999999999999997 332             2368999999999999999999775

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.94  E-value=1.3e-28  Score=182.14  Aligned_cols=133  Identities=35%  Similarity=0.544  Sum_probs=115.6

Q ss_pred             EEEeccccccccchHHHHHHHHccC--CceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHHH
Q 043195           18 VFLSFRGRDVRHNFISHLNAALCRK--KIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKIL   94 (162)
Q Consensus        18 VFISys~~D~~~~f~~~L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~   94 (162)
                      |||||++.+.+..|+.+|..+|+++  |+++|++++ +.+|..+.++|.++|++|+++|+|+|++|+.|+||+.||..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999333578999999999999  999999886 9999999999999999999999999999999999999999999


Q ss_pred             HHhhhc--CCeeEeEEEeeCCcccc-cccCchHHHHHHHHHHhhhC--hHHHHHHHHHHHH
Q 043195           95 ESKNKY--GQIVVPVFYLVDPSDVR-NQTGTIGDSFLKLEERFKEK--IDMLQTWRIAMRE  150 (162)
Q Consensus        95 ~~~~~~--~~~viPVfy~v~p~dv~-~q~~~f~~~f~~~~~~~~~~--~e~~~~W~~aL~~  150 (162)
                      ++..+.  ..+|+||||++.+++++ .+.+.|+..|..+.+....+  ..+...|++++.+
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~~  141 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRYH  141 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhcC
Confidence            987654  48999999999999999 79999999998877765433  5789999998763

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.94  E-value=1.7e-26  Score=169.17  Aligned_cols=137  Identities=40%  Similarity=0.661  Sum_probs=115.7

Q ss_pred             eeeEEEeccc-cccccchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHH
Q 043195           15 KYDVFLSFRG-RDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKI   93 (162)
Q Consensus        15 ~ydVFISys~-~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~   93 (162)
                      +|||||||++ .+....|+.+|...|...|+.+|.|+....|... .+|.++|++|+++|+|+||+|+.|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            4899999999 3445689999999999999999998764333333 3999999999999999999999999999999999


Q ss_pred             HHHhhh-cCCeeEeEEEeeCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhc
Q 043195           94 LESKNK-YGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAAN  153 (162)
Q Consensus        94 ~~~~~~-~~~~viPVfy~v~p~dv~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~  153 (162)
                      +++..+ ...+||||+++..|+++.++.+.++..+......+..+..+ +.|+.++..+++
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            987654 67899999999889999999999999998876666543333 799999988764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.79  E-value=8.5e-20  Score=127.46  Aligned_cols=87  Identities=31%  Similarity=0.509  Sum_probs=75.3

Q ss_pred             EEEeccccccccchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHHHHHh
Q 043195           18 VFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESK   97 (162)
Q Consensus        18 VFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~   97 (162)
                      |||||+++|.  .++..|...|++.|+++|+|+++.+|+.+.+.|.++|++|+.+|+++|++|..|+||..|+..+.+  
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            8999999994  799999999999999999997799999999999999999999999999999999999999999843  


Q ss_pred             hhcCCeeEeEEEe
Q 043195           98 NKYGQIVVPVFYL  110 (162)
Q Consensus        98 ~~~~~~viPVfy~  110 (162)
                        .+..||||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              45689999864

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.08  E-value=3.9e-10  Score=97.68  Aligned_cols=103  Identities=26%  Similarity=0.418  Sum_probs=81.3

Q ss_pred             CceeeEEEeccccccccchHHHHHHHHccCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCC----CC----
Q 043195           13 QIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYA----SS----   83 (162)
Q Consensus        13 ~~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~----~S----   83 (162)
                      +.+.|||||||+.. ....++-|...|+-+|++||+|-+ +..|. +.+.+.+.|...+.+|+|++|+.+    +.    
T Consensus       610 skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe  687 (832)
T KOG3678|consen  610 SKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE  687 (832)
T ss_pred             cCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence            46799999998764 467999999999999999999988 88887 667899999999999999999976    33    


Q ss_pred             hhHHHHHHHHHHHhhhcCCeeEeEEEe---------eCCcccccccC
Q 043195           84 RWCLNELVKILESKNKYGQIVVPVFYL---------VDPSDVRNQTG  121 (162)
Q Consensus        84 ~wc~~El~~~~~~~~~~~~~viPVfy~---------v~p~dv~~q~~  121 (162)
                      .|.-.||.-+++|    +..|||||-.         +.|.|++-.+.
T Consensus       688 DWVHKEl~~Afe~----~KNIiPI~D~aFE~Pt~ed~iPnDirmi~k  730 (832)
T KOG3678|consen  688 DWVHKELKCAFEH----QKNIIPIFDTAFEFPTKEDQIPNDIRMITK  730 (832)
T ss_pred             HHHHHHHHHHHHh----cCCeeeeecccccCCCchhcCcHHHHHHHh
Confidence            4555566666655    5599999843         55666665443

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.68  E-value=3.9e-08  Score=71.79  Aligned_cols=90  Identities=22%  Similarity=0.381  Sum_probs=47.8

Q ss_pred             eeEEEeccccccccchHHHHHHHHccC-------Ccee-ee---------cCC-cCCCCCcchHHHHhhhhCceEEEEee
Q 043195           16 YDVFLSFRGRDVRHNFISHLNAALCRK-------KIET-FI---------DDK-LNRGNQISPSLSSAIEGSKISIVIFS   77 (162)
Q Consensus        16 ydVFISys~~D~~~~f~~~L~~~L~~~-------gi~~-f~---------d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S   77 (162)
                      |+|||||++.|.. ..+..|...+...       .+.. |.         +.. ......|...|.++|..|.++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999999852 3677777777652       2211 11         111 22334678899999999999999999


Q ss_pred             cCCCCChhHHHHHHHHHHHhhhcCCeeEeEEEe
Q 043195           78 KGYASSRWCLNELVKILESKNKYGQIVVPVFYL  110 (162)
Q Consensus        78 ~~y~~S~wc~~El~~~~~~~~~~~~~viPVfy~  110 (162)
                      ++...|.|+..|+..+++    .+..||-|-+.
T Consensus        80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK----KGKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTT----T---EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHH----CCCCEEEEECC
Confidence            999999999999998876    45678887653

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.03  E-value=3.1e-05  Score=57.34  Aligned_cols=64  Identities=20%  Similarity=0.360  Sum_probs=52.0

Q ss_pred             eEEEeccccccc-cchHHHHHHHHccC-CceeeecCC-cC--CCCCcchHHHHhhhhCceEEEEeecCC
Q 043195           17 DVFLSFRGRDVR-HNFISHLNAALCRK-KIETFIDDK-LN--RGNQISPSLSSAIEGSKISIVIFSKGY   80 (162)
Q Consensus        17 dVFISys~~D~~-~~f~~~L~~~L~~~-gi~~f~d~~-~~--~G~~i~~~i~~aI~~S~~~Ivv~S~~y   80 (162)
                      .|||||++.... ...|..|...|++. |+.|.+|.. ..  ++..+..=+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            599999985432 36789999999999 999999986 52  366666677788999999999999654

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=96.98  E-value=0.0022  Score=46.80  Aligned_cols=96  Identities=23%  Similarity=0.240  Sum_probs=67.6

Q ss_pred             eEEEeccccccccchHHHHHHHHccCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCC-------------C
Q 043195           17 DVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYA-------------S   82 (162)
Q Consensus        17 dVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~-------------~   82 (162)
                      .|||.|+ .|.  ..+..+..-|+..|+.+..-.+ ...|..+.+.+.+.+.+++..|++++|+=.             .
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            4899998 553  6888898889878887765433 789999999999999999999999999522             2


Q ss_pred             ChhHHHHHHHHHHHhhhcCCeeEeEEEe-e-CCcccc
Q 043195           83 SRWCLNELVKILESKNKYGQIVVPVFYL-V-DPSDVR  117 (162)
Q Consensus        83 S~wc~~El~~~~~~~~~~~~~viPVfy~-v-~p~dv~  117 (162)
                      -...+.|+..++...  +..+++-+.-+ + -|||+.
T Consensus        78 R~NVifE~G~f~g~L--Gr~rv~~l~~~~v~~PSDl~  112 (125)
T PF10137_consen   78 RQNVIFELGLFIGKL--GRERVFILVKGGVELPSDLS  112 (125)
T ss_pred             ccceeehhhHHHhhc--CcceEEEEEcCCccCCcccC
Confidence            234567888877542  22344444321 2 466654

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=94.93  E-value=0.084  Score=35.39  Aligned_cols=67  Identities=21%  Similarity=0.175  Sum_probs=48.5

Q ss_pred             eEEEeccccccccchHHHHHHHHccCCceeeecCCc-CCCCCcchHHHHhhhhCceEEEEeecCCCCCh
Q 043195           17 DVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKL-NRGNQISPSLSSAIEGSKISIVIFSKGYASSR   84 (162)
Q Consensus        17 dVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~-~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~   84 (162)
                      .||||-.-.|.. .--..|...|.+.|..+..-+.+ ..+....+.+.+.|++|+++|.++-..|-..+
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~   68 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP   68 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence            389998777752 44567777787777765443333 23556667889999999999999999997643

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=91.23  E-value=1.1  Score=31.31  Aligned_cols=67  Identities=16%  Similarity=0.064  Sum_probs=48.9

Q ss_pred             cchHHHHHHHHccCCceeeecCC--cC---CCC----CcchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHHHHH
Q 043195           29 HNFISHLNAALCRKKIETFIDDK--LN---RGN----QISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILES   96 (162)
Q Consensus        29 ~~f~~~L~~~L~~~gi~~f~d~~--~~---~G~----~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~   96 (162)
                      ..+...+.+.|++.|+.+|...+  ..   .+.    .|.+.-.++|++|+++|+++...- .+.-+.-|+..+...
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC
Confidence            47889999999999999987553  21   122    333444679999999999998766 566788899988653

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=90.12  E-value=1.1  Score=35.44  Aligned_cols=95  Identities=22%  Similarity=0.211  Sum_probs=66.6

Q ss_pred             eEEEeccccccccchHHHHHHHHccC--CceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecCCC--------CChh-
Q 043195           17 DVFLSFRGRDVRHNFISHLNAALCRK--KIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYA--------SSRW-   85 (162)
Q Consensus        17 dVFISys~~D~~~~f~~~L~~~L~~~--gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~--------~S~w-   85 (162)
                      .|||-|+++    ..+.....+|.+.  -..+|.|.-+..|..+.+.+.+-|.+++..|++.+|+=.        +-.| 
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p  159 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP  159 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence            999999764    3676767777643  356777777899999999999999999999999999854        1222 


Q ss_pred             -----HHHHHHHHHHHhhhcCCeeEeEEEe----e-CCccccc
Q 043195           86 -----CLNELVKILESKNKYGQIVVPVFYL----V-DPSDVRN  118 (162)
Q Consensus        86 -----c~~El~~~~~~~~~~~~~viPVfy~----v-~p~dv~~  118 (162)
                           ...||..++.+.  +..+|+- ++.    | -|||+..
T Consensus       160 raRqNVifELGm~mgrL--gRkrv~I-l~k~~envelPSDi~G  199 (233)
T COG4271         160 RARQNVIFELGMFMGRL--GRKRVMI-LMKRDENVELPSDIAG  199 (233)
T ss_pred             cccccchhhHhhHHhhc--ccceEEE-EecccccccCccccCc
Confidence                 566777777643  2234433 332    2 4777654

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=89.35  E-value=0.39  Score=39.34  Aligned_cols=99  Identities=16%  Similarity=0.171  Sum_probs=65.9

Q ss_pred             CCceeeEEEeccccccccchHHHHHHHHcc--CCceeeecCC----cCCCCCcchHHHHhh-hhCceEEEEeecCCCCCh
Q 043195           12 PQIKYDVFLSFRGRDVRHNFISHLNAALCR--KKIETFIDDK----LNRGNQISPSLSSAI-EGSKISIVIFSKGYASSR   84 (162)
Q Consensus        12 ~~~~ydVFISys~~D~~~~f~~~L~~~L~~--~gi~~f~d~~----~~~G~~i~~~i~~aI-~~S~~~Ivv~S~~y~~S~   84 (162)
                      ..+.||+=|||.|+-  .+.|+....+++.  .-+..|+|..    +-+|+ +.+-+...- ..|+..+|.+..+|....
T Consensus       174 ~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K~  250 (329)
T COG4916         174 SEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICKS  250 (329)
T ss_pred             cccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEee
Confidence            456799999999986  3799999999983  3455677754    33433 222222222 268889999999999999


Q ss_pred             hHHHHHHHHHHHhhhcCCeeEeEEE-eeCCcc
Q 043195           85 WCLNELVKILESKNKYGQIVVPVFY-LVDPSD  115 (162)
Q Consensus        85 wc~~El~~~~~~~~~~~~~viPVfy-~v~p~d  115 (162)
                      ||.-|...+-+-  ..-..+.||.| +++-+-
T Consensus       251 ~c~~E~~~~r~~--~~~d~~~rI~~~~~d~~a  280 (329)
T COG4916         251 TCHIEGLEGRLN--PILDTGFRIKYLYADNIA  280 (329)
T ss_pred             eeccchhhcccc--ccccccceEEEEecCCcc
Confidence            999988765332  12245677766 344443

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=81.79  E-value=10  Score=23.97  Aligned_cols=61  Identities=16%  Similarity=0.094  Sum_probs=36.7

Q ss_pred             HHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHHHHHhhhcCCeeE
Q 043195           33 SHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVV  105 (162)
Q Consensus        33 ~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~vi  105 (162)
                      .-|+.-|++.|+++-..+.          ..+++...+-++++++|++.-+.  -.++..+.+..+.++..||
T Consensus         8 ~a~~~~L~~~g~~v~~~~~----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl   68 (70)
T PF14258_consen    8 YALYQLLEEQGVKVERWRK----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL   68 (70)
T ss_pred             HHHHHHHHHCCCeeEEecc----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence            4567778888988743221          12345557889999999966553  3444444444444555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		4e-32
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-30
3h16_A	154	Crystal Structure Of A Bacteria Tir Domain, Pdtir F		3e-04

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 91/143 (63%), Gaps = 3/143 (2%)
Query: 15  KYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISI 73
           KYDVFLSFRG D RHNFIS L   L R+ I TF DDK L  G + SP L S IE S+ ++
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 74  VIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEER 133
           V+ S+ YA+S WCL+ELV I++ + K    V+P+FY V+P+ VR QTG + + F K   R
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127
Query: 134 FKEKIDMLQTWRIAMREAANLSG 156
             E  + +  WR A+   A LSG
Sbjct: 128 --EDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 96/148 (64%), Gaps = 4/148 (2%)
Query: 12  PQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETF-IDDKLNRGNQISPSLSSAIEGSK 70
           P ++Y+VFLSFRG D R  F   L  +L R KI TF  DD+L +G +I P+L  AI+ SK
Sbjct: 32  PSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSK 91
Query: 71  ISIVIFSKGYASSRWCLNELVKILESKNKYG-QIVVPVFYLVDPSDVRNQTGTIGDSFLK 129
           I + I S GYA S+WCL EL +I+  + +   +I++P+FY+VDPSDVR+QTG    +F K
Sbjct: 92  IYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRK 151
Query: 130 LEERFKEKIDMLQTWRIAMREAANLSGF 157
              +F  +   +Q W+ A+++  +L G+
Sbjct: 152 HANKFDGQ--TIQNWKDALKKVGDLKGW 177

>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 2   ASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDD-KLNRGNQISP 60
           A  +++ ++     +D+F+S    D + +F+  L   L     E + DD  L  G+ +  
Sbjct: 7   AGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRR 65
Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           S+   +  S+  IV+ S  +    W   EL  + + ++     ++P+++ V   +V + +
Sbjct: 66  SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125
Query: 121 GTIGD 125
            T+ D
Sbjct: 126 PTMAD 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	162
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	6e-86
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	8e-86
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	8e-69
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	2e-13
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	1e-07
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	1e-05
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	2e-05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  248 bits (636), Expect = 6e-86
 Identities = 72/162 (44%), Positives = 97/162 (59%), Gaps = 10/162 (6%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQIS 59
           M+S +++       KYDVFLSFRG D RHNFIS L   L R+ I TF DDK L  G + S
Sbjct: 1   MSSHTAT-------KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFS 53

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
           P L S IE S+ ++V+ S+ YA+S WCL+ELV I++ + K    V+P+FY V+P+ VR Q
Sbjct: 54  PELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQ 113

Query: 120 TGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSHG 161
           TG + + F K   R     + +  WR A+   A LSG  S  
Sbjct: 114 TGVLAEQFKKHASREDP--EKVLKWRQALTNFAQLSGDCSGD 153

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  249 bits (638), Expect = 8e-86
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 4/162 (2%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDD-KLNRGNQIS 59
           ++ S++     P ++Y+VFLSFRG D R  F   L  +L R KI TF DD +L +G +I 
Sbjct: 21  ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80

Query: 60  PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYG-QIVVPVFYLVDPSDVRN 118
           P+L  AI+ SKI + I S GYA S+WCL EL +I+  + +   +I++P+FY+VDPSDVR+
Sbjct: 81  PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140

Query: 119 QTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
           QTG    +F K   +F      +Q W+ A+++  +L G+   
Sbjct: 141 QTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIG 180

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  204 bits (521), Expect = 8e-69
 Identities = 28/148 (18%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 2   ASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISP 60
           A  +++ ++     +D+F+S    D + +F+  L   L     E + DD  L  G+ +  
Sbjct: 7   AGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRR 65

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           S+   +  S+  IV+ S  +    W   EL  + + ++     ++P+++ V   +V + +
Sbjct: 66  SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125

Query: 121 GTIGDSFLKLEERFKEKIDMLQTWRIAM 148
            T+ D            +D +    +A+
Sbjct: 126 PTMADKLAFNTSTK--SVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 62.4 bits (152), Expect = 2e-13
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 15  KYDVFLSFRGRDVRHNFISHLNAAL--CRKKIETFIDDK-LNRGNQISPSLSSAIEGSKI 71
            YDV +     D        L + L      +  F+  +    G  I   L  A+  S  
Sbjct: 10  DYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 72  SIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVR 117
            +++ + G+    WC  ++++ L          +P+   +  +   
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 10  MNPQIKYDVFLSFRGRD---VRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAI 66
           +   +++  F+S+   D   V++  I +L        I  +     + G  IS ++ S I
Sbjct: 30  LKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESY-FDPGKSISENIVSFI 88

Query: 67  EGSKISIVIFSKGYASSRWCLNEL 90
           E S  SI + S  +  + WC  E 
Sbjct: 89  EKSYKSIFVLSPNFVQNEWCHYEF 112

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 13 QIKYDVFLSFRGRD---VRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGS 69
           I YD F+S+  RD   V +  +  L       K+     D    G  I  ++  +IE S
Sbjct: 3  NIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRD-FIHGKWIIDNIIDSIEKS 61

Query: 70 KISIVIFSKGYASSRWCLNEL 90
            ++ + S+ +  S W   EL
Sbjct: 62 HKTVFVLSENFVKSEWXKYEL 82

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 14/109 (12%)

Query: 15  KYDVFLSFRGRDVR---------HNFISHLNAALCRKK--IETFIDDK-LNRGNQISPSL 62
            YD +LS+   D             F   +   +  K    + FI D+ L         +
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 63  SSAIEGSKISIVIFSKGYA-SSRWCLNELVKIL-ESKNKYGQIVVPVFY 109
           +  ++ SK  I++ +  Y     W + EL   L          V+ +  
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIEC 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
2js7_A	160	Myeloid differentiation primary response protein M	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.92
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.14
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	96.81
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	91.22
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	86.17

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=3.6e-55  Score=341.25  Aligned_cols=149  Identities=44%  Similarity=0.794  Sum_probs=139.6

Q ss_pred             CCCCceeeEEEeccccccccchHHHHHHHHccCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHH
Q 043195           10 MNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLN   88 (162)
Q Consensus        10 ~~~~~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~   88 (162)
                      +.+.++||||||||++|+|+.|++||+++|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||+||++|+||++
T Consensus        30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~  109 (204)
T 3ozi_A           30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM  109 (204)
T ss_dssp             ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred             CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence            368899999999999999999999999999999999999976 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh-cCCeeEeEEEeeCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccccccC
Q 043195           89 ELVKILESKNK-YGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH  160 (162)
Q Consensus        89 El~~~~~~~~~-~~~~viPVfy~v~p~dv~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~  160 (162)
                      ||++|++|.++ ++++||||||+|+|++||+|+|.||++|.+|++++  +.+++++||.||++||+++||+++
T Consensus       110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~  180 (204)
T 3ozi_A          110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIG  180 (204)
T ss_dssp             HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEEC
T ss_pred             HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecC
Confidence            99999999875 58999999999999999999999999999999987  478999999999999999999987

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=5.7e-54  Score=328.67  Aligned_cols=147  Identities=48%  Similarity=0.786  Sum_probs=127.5

Q ss_pred             CCceeeEEEeccccccccchHHHHHHHHccCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHHHH
Q 043195           12 PQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNEL   90 (162)
Q Consensus        12 ~~~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El   90 (162)
                      ..++||||||||++|+|++|++||+++|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus         5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL   84 (176)
T 3jrn_A            5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL   84 (176)
T ss_dssp             --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred             CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence            4578999999999999989999999999999999999976 999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCeeEeEEEeeCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccccccC
Q 043195           91 VKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH  160 (162)
Q Consensus        91 ~~~~~~~~~~~~~viPVfy~v~p~dv~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~  160 (162)
                      ++|++|.++++++||||||+|+|++||+|+|.||++|.+|+++  .+.+++++||.||++||+++||++.
T Consensus        85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            9999999888999999999999999999999999999999987  5689999999999999999999874

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=2.1e-37  Score=231.88  Aligned_cols=136  Identities=18%  Similarity=0.319  Sum_probs=117.9

Q ss_pred             CCCCceeeEEEeccccccccchHHHHHHHHccCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHH
Q 043195           10 MNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLN   88 (162)
Q Consensus        10 ~~~~~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~   88 (162)
                      +++.++|||||||+++| +..|+.+|+.+|+++|+++|+|++ +.+|+.|.++|.++|++|+++|+|+|++|++|.||++
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            36789999999999999 568999999999999999999997 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCeeEeEEEeeCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHh
Q 043195           89 ELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREA  151 (162)
Q Consensus        89 El~~~~~~~~~~~~~viPVfy~v~p~dv~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v  151 (162)
                      ||..++++...++++||||||+++|++|++|.|.|++.|.....     ...+.++-..|.++
T Consensus        94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l  151 (154)
T 3h16_A           94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence            99999998777788999999999999999999999988763222     33455555555544

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=1.4e-31  Score=199.20  Aligned_cols=132  Identities=14%  Similarity=0.261  Sum_probs=93.1

Q ss_pred             CCceeeEEEeccccccccchHHHHHHHHcc--CCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHH
Q 043195           12 PQIKYDVFLSFRGRDVRHNFISHLNAALCR--KKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLN   88 (162)
Q Consensus        12 ~~~~ydVFISys~~D~~~~f~~~L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~   88 (162)
                      .++.|||||||+++|+  .|+.+|..+|++  .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|++|.||+.
T Consensus         7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~   84 (146)
T 3ub2_A            7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY   84 (146)
T ss_dssp             TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred             CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence            5689999999999996  589999999998  5999999877 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCeeEeEEEeeCCccccc----ccCchHHHHHHHHHHhhhChHHHHHHHHHH
Q 043195           89 ELVKILESKNKYGQIVVPVFYLVDPSDVRN----QTGTIGDSFLKLEERFKEKIDMLQTWRIAM  148 (162)
Q Consensus        89 El~~~~~~~~~~~~~viPVfy~v~p~dv~~----q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL  148 (162)
                      |+..|+.+...+..+||||||+++++++..    ......   ....+.|..-.+.|.+|+.||
T Consensus        85 El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           85 QMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence            999999876333447889999988666543    322111   111233333467899999876

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=2.6e-27  Score=176.44  Aligned_cols=104  Identities=17%  Similarity=0.330  Sum_probs=92.5

Q ss_pred             CCceeeEEEeccccccccchHHH-HHHHHccC--CceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHH
Q 043195           12 PQIKYDVFLSFRGRDVRHNFISH-LNAALCRK--KIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCL   87 (162)
Q Consensus        12 ~~~~ydVFISys~~D~~~~f~~~-L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   87 (162)
                      .++.|||||||+++|.  .|+.+ |..+|++.  |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4578999999999996  79986 99999986  999999887 999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhhhcCCeeEeEEEe-eCCcccc
Q 043195           88 NELVKILE-SKNKYGQIVVPVFYL-VDPSDVR  117 (162)
Q Consensus        88 ~El~~~~~-~~~~~~~~viPVfy~-v~p~dv~  117 (162)
                      .|+..|+. +.++++.+||||||+ +.+.++.
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            99999985 445677899999995 5555554

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=1.5e-26  Score=174.25  Aligned_cols=100  Identities=18%  Similarity=0.311  Sum_probs=90.0

Q ss_pred             CCceeeEEEeccccccccchHHHHHHHHccC--CceeeecCC-cCCCCCcchHHHHhhh-hCceEEEEeecCCCCChhHH
Q 043195           12 PQIKYDVFLSFRGRDVRHNFISHLNAALCRK--KIETFIDDK-LNRGNQISPSLSSAIE-GSKISIVIFSKGYASSRWCL   87 (162)
Q Consensus        12 ~~~~ydVFISys~~D~~~~f~~~L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~-~S~~~Ivv~S~~y~~S~wc~   87 (162)
                      .++.|||||||+++|.  .|+.+|..+|+++  |+++|+|++ +.+|+.+.++|.++|+ +|+++|+|+|++|++|.||+
T Consensus        13 ~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~   90 (160)
T 2js7_A           13 MPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD   90 (160)
T ss_dssp             CTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred             CCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence            4678999999999994  7999999999984  699999877 9999999999999999 79999999999999999999


Q ss_pred             HHHHHHHHHh-hhcCCeeEeEEEeeCC
Q 043195           88 NELVKILESK-NKYGQIVVPVFYLVDP  113 (162)
Q Consensus        88 ~El~~~~~~~-~~~~~~viPVfy~v~p  113 (162)
                      .|+..|+.+. ++++++||||+|+.-+
T Consensus        91 ~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           91 FQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            9999999864 4456799999997543

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.92  E-value=1.6e-26  Score=177.01  Aligned_cols=105  Identities=18%  Similarity=0.346  Sum_probs=87.9

Q ss_pred             CCCceeeEEEeccccccccchHHH-HHHHHcc--CCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhH
Q 043195           11 NPQIKYDVFLSFRGRDVRHNFISH-LNAALCR--KKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWC   86 (162)
Q Consensus        11 ~~~~~ydVFISys~~D~~~~f~~~-L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc   86 (162)
                      ..++.|||||||+++|+  .|+.. |..+|++  .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||
T Consensus        31 ~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc  108 (178)
T 2j67_A           31 KRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC  108 (178)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred             CCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence            36688999999999996  79975 9999998  8999999887 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-hhhcCCeeEeEEEe-eCCcccc
Q 043195           87 LNELVKILES-KNKYGQIVVPVFYL-VDPSDVR  117 (162)
Q Consensus        87 ~~El~~~~~~-~~~~~~~viPVfy~-v~p~dv~  117 (162)
                      +.|+..|+.+ .++++++||||||+ +.+.++.
T Consensus       109 ~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp  141 (178)
T 2j67_A          109 HYEFYFAHHNLFHENSDHIILILLEPIPFYCIP  141 (178)
T ss_dssp             GTHHHHTTCC-------CEEEEESSCCCGGGSC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEEecCCChHHCC
Confidence            9999999864 45567899999996 4444443

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.92  E-value=1.2e-25  Score=169.13  Aligned_cols=101  Identities=20%  Similarity=0.258  Sum_probs=88.8

Q ss_pred             ceeeEEEecccccc---------ccchHHHHHH-HHc-cCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCC
Q 043195           14 IKYDVFLSFRGRDV---------RHNFISHLNA-ALC-RKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYA   81 (162)
Q Consensus        14 ~~ydVFISys~~D~---------~~~f~~~L~~-~L~-~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~   81 (162)
                      +.|||||||+++|+         ++.|+.+|.. .|+ +.|+++|+|++ +.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            36999999999996         3578888776 699 79999999887 999999999999999999999999999997


Q ss_pred             -CChhHHHHHHHHHHHh-hhcCCeeEeEEEeeCCc
Q 043195           82 -SSRWCLNELVKILESK-NKYGQIVVPVFYLVDPS  114 (162)
Q Consensus        82 -~S~wc~~El~~~~~~~-~~~~~~viPVfy~v~p~  114 (162)
                       .|.||+.|+..|+.+. ++++.+||||+|.-.+.
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence             9999999999999875 56688999999875443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=1.2e-19  Score=164.88  Aligned_cols=100  Identities=17%  Similarity=0.340  Sum_probs=89.6

Q ss_pred             CCceeeEEEeccccccccchH-HHHHHHHcc-----CCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCCh
Q 043195           12 PQIKYDVFLSFRGRDVRHNFI-SHLNAALCR-----KKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSR   84 (162)
Q Consensus        12 ~~~~ydVFISys~~D~~~~f~-~~L~~~L~~-----~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~   84 (162)
                      ..+.|||||||+++|.  .|| ..|...|++     .|+++|++++ +.||+.+.++|.++|++||++|+|+|++|+.|+
T Consensus       667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~  744 (844)
T 3j0a_A          667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG  744 (844)
T ss_dssp             SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred             cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence            5679999999999996  677 779999985     5899999887 999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHh-hhcCCeeEeEEEeeCC
Q 043195           85 WCLNELVKILESK-NKYGQIVVPVFYLVDP  113 (162)
Q Consensus        85 wc~~El~~~~~~~-~~~~~~viPVfy~v~p  113 (162)
                      ||..|+..|+.+. ++++.+||||||+..|
T Consensus       745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             STTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            9999999998654 6678899999996443

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.14  E-value=2.1e-06  Score=60.43  Aligned_cols=72  Identities=10%  Similarity=-0.006  Sum_probs=52.2

Q ss_pred             ceeeEEEeccccccccchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHH
Q 043195           14 IKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKI   93 (162)
Q Consensus        14 ~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~   93 (162)
                      .+|.+||||+.+|.    ...|...|.+.|+.. .|              +.|+.|+++|++.++....|+||..|+..+
T Consensus         3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            46999999999882    333434443435522 22              678999999999999999999999999776


Q ss_pred             HHHhhhcCCeeEeEE
Q 043195           94 LESKNKYGQIVVPVF  108 (162)
Q Consensus        94 ~~~~~~~~~~viPVf  108 (162)
                      .+    .+..|+-|.
T Consensus        64 ~~----~gkpIigV~   74 (111)
T 1eiw_A           64 RK----SSKPIITVR   74 (111)
T ss_dssp             TT----TTCCEEEEC
T ss_pred             HH----cCCCEEEEE
Confidence            54    455666664

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=96.81  E-value=0.007  Score=45.89  Aligned_cols=105  Identities=20%  Similarity=0.226  Sum_probs=70.8

Q ss_pred             eeeEEEec--------------cccccccchHHHHHHHHccCCceeeecCC-c----C---C-CCCcchHHHHhhhhCce
Q 043195           15 KYDVFLSF--------------RGRDVRHNFISHLNAALCRKKIETFIDDK-L----N---R-GNQISPSLSSAIEGSKI   71 (162)
Q Consensus        15 ~ydVFISy--------------s~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~----~---~-G~~i~~~i~~aI~~S~~   71 (162)
                      +--+|++|              ..+|.  .....|..--.+..+-.|.|-. .    .   . -..|.+.|.+.|..|+.
T Consensus         5 rn~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~   82 (189)
T 3hyn_A            5 QNANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN   82 (189)
T ss_dssp             CCEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred             ccCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence            34577887              34453  4556666655555554556642 2    1   2 23577888999999999


Q ss_pred             EEEEeecCCCCChhHHHHHHHHHHHhhhcCCeeEeEEEeeC-CcccccccCchH
Q 043195           72 SIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVD-PSDVRNQTGTIG  124 (162)
Q Consensus        72 ~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPVfy~v~-p~dv~~q~~~f~  124 (162)
                      +|+++|++...|.|...|+..+++   +.+..||-|..+-. .+++.+-.|.|.
T Consensus        83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~  133 (189)
T 3hyn_A           83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK  133 (189)
T ss_dssp             EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred             EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence            999999999999999999998873   24668888765522 345554444443

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=91.22  E-value=0.76  Score=33.70  Aligned_cols=85  Identities=11%  Similarity=0.052  Sum_probs=56.0

Q ss_pred             CCceeeEEEecc--ccccccchHHHHHHHHccCCceeeecCC--cCCCCCcchHHHHhhhhCceEEEEeec--CCCCChh
Q 043195           12 PQIKYDVFLSFR--GRDVRHNFISHLNAALCRKKIETFIDDK--LNRGNQISPSLSSAIEGSKISIVIFSK--GYASSRW   85 (162)
Q Consensus        12 ~~~~ydVFISys--~~D~~~~f~~~L~~~L~~~gi~~f~d~~--~~~G~~i~~~i~~aI~~S~~~Ivv~S~--~y~~S~w   85 (162)
                      +...-.+++.-.  ..+....+...+...|++.|+.+|.-.+  ......|..+-.++|++|+++|.+++|  .-..++-
T Consensus         7 ~~~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~G   86 (161)
T 2f62_A            7 HHMRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCG   86 (161)
T ss_dssp             CCCCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHH
T ss_pred             hhhhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCc
Confidence            334445555531  2232026889999999999999887433  222233444447899999999999996  3334555


Q ss_pred             HHHHHHHHHHH
Q 043195           86 CLNELVKILES   96 (162)
Q Consensus        86 c~~El~~~~~~   96 (162)
                      ...|+..+...
T Consensus        87 TafEiGyA~Al   97 (161)
T 2f62_A           87 TAFEVGCAAAL   97 (161)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHC
Confidence            88899887753

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=86.17  E-value=4.9  Score=29.14  Aligned_cols=79  Identities=11%  Similarity=0.095  Sum_probs=51.4

Q ss_pred             ceeeEEEecccc--ccccchHHHHHHHHccCCceeeecCCcC-----CCCC-------cchHHHHhhhhCceEEEEeecC
Q 043195           14 IKYDVFLSFRGR--DVRHNFISHLNAALCRKKIETFIDDKLN-----RGNQ-------ISPSLSSAIEGSKISIVIFSKG   79 (162)
Q Consensus        14 ~~ydVFISys~~--D~~~~f~~~L~~~L~~~gi~~f~d~~~~-----~G~~-------i~~~i~~aI~~S~~~Ivv~S~~   79 (162)
                      .+..|||+=.-.  .........+...|++.| .|+.+....     .|..       +...-.+.|++|+++|+++.  
T Consensus        10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~--   86 (165)
T 2khz_A           10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT--   86 (165)
T ss_dssp             CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS--
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC--
Confidence            346799984222  111224588999999999 886544322     2211       22233579999999999997  


Q ss_pred             CCCChhHHHHHHHHHHH
Q 043195           80 YASSRWCLNELVKILES   96 (162)
Q Consensus        80 y~~S~wc~~El~~~~~~   96 (162)
                       -.+.-+..|+..+...
T Consensus        87 -~~d~Gt~~EiGyA~al  102 (165)
T 2khz_A           87 -QPSLGVGYELGRAVAL  102 (165)
T ss_dssp             -SCCHHHHHHHHHHHHT
T ss_pred             -CCCCCHHHHHHHHHHC
Confidence             4577789999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	2e-19
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-16

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 2e-19
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 3/122 (2%)

Query: 10  MNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEG 68
           +   +++  F+S+ G D      + L   L ++ ++  + ++    G  I  ++ + IE 
Sbjct: 7   LQRNLQFHAFISYSGHD-SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEK 65

Query: 69  SKISIVIFSKGYASSRWCLNELVKILESKNKYGQIV-VPVFYLVDPSDVRNQTGTIGDSF 127
           S  SI + S  +  S WC  EL     +    G    + +     P      +     S 
Sbjct: 66  SYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSL 125

Query: 128 LK 129
           + 
Sbjct: 126 MA 127

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 2e-16
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 14  IKYDVFLSFRGRD---VRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSK 70
           I YD F+S+  RD   V +  +  L       K+          G  I  ++  +IE S 
Sbjct: 4   ICYDAFVSYSERDAYWVENLMVQELENFNPPFKL-CLHKRDFIHGKWIIDNIIDSIEKSH 62

Query: 71  ISIVIFSKGYASSRWCLNELVKIL-ESKNKYGQIVVPVFYLVDPSDVRNQ 119
            ++ + S+ +  S WC  EL        ++     + +           Q
Sbjct: 63  KTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.89
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.89
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	91.82
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	90.08

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-24  Score=162.26  Aligned_cols=101  Identities=20%  Similarity=0.413  Sum_probs=90.4

Q ss_pred             CCCceeeEEEeccccccccchH-HHHHHHHccCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHH
Q 043195           11 NPQIKYDVFLSFRGRDVRHNFI-SHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLN   88 (162)
Q Consensus        11 ~~~~~ydVFISys~~D~~~~f~-~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~   88 (162)
                      ..+++|||||||+++|.  .|| ..|...|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|+.|.||..
T Consensus         8 ~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~   85 (161)
T d1fyva_           8 QRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHY   85 (161)
T ss_dssp             SSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHH
T ss_pred             CCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHH
Confidence            57789999999999995  577 5799999999999999887 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-hhcCCeeEeEEEeeCC
Q 043195           89 ELVKILESK-NKYGQIVVPVFYLVDP  113 (162)
Q Consensus        89 El~~~~~~~-~~~~~~viPVfy~v~p  113 (162)
                      |+..++.+. +.+..++|||+++.-|
T Consensus        86 E~~~a~~~~~~~~~~~lIpV~l~~~~  111 (161)
T d1fyva_          86 ELYFAHHNLFHEGSNSLILILLEPIP  111 (161)
T ss_dssp             HHHTTSCCCSCSSCSSEEEEESSCCC
T ss_pred             HHHHHHHHHHHcCCCceeEEEEecCc
Confidence            999998654 4566799999996433

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-24  Score=159.25  Aligned_cols=100  Identities=19%  Similarity=0.334  Sum_probs=87.6

Q ss_pred             CCceeeEEEeccccccccchH-HHHHHHHcc--CCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHH
Q 043195           12 PQIKYDVFLSFRGRDVRHNFI-SHLNAALCR--KKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCL   87 (162)
Q Consensus        12 ~~~~ydVFISys~~D~~~~f~-~~L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~   87 (162)
                      .++.|||||||+++|.  .|| ..|...|++  .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|+.|.||.
T Consensus         2 ~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            5789999999999994  566 568999975  4899999877 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-hhhcCCeeEeEEEeeCC
Q 043195           88 NELVKILES-KNKYGQIVVPVFYLVDP  113 (162)
Q Consensus        88 ~El~~~~~~-~~~~~~~viPVfy~v~p  113 (162)
                      .|+..++.. .++++.+||||+++..+
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~~~  106 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEPIE  106 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHcCCceEEEEEeccCc
Confidence            999887654 35678899999996433

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.82  E-value=0.29  Score=33.91  Aligned_cols=68  Identities=12%  Similarity=0.070  Sum_probs=51.4

Q ss_pred             cchHHHHHHHHccCCceeeecCC--cCCCCCcchHHHHhhhhCceEEEEeec--CCCCChhHHHHHHHHHHH
Q 043195           29 HNFISHLNAALCRKKIETFIDDK--LNRGNQISPSLSSAIEGSKISIVIFSK--GYASSRWCLNELVKILES   96 (162)
Q Consensus        29 ~~f~~~L~~~L~~~gi~~f~d~~--~~~G~~i~~~i~~aI~~S~~~Ivv~S~--~y~~S~wc~~El~~~~~~   96 (162)
                      ..+...+...|+++|+.++.-.+  .+....|-..-.++|++|+++|.+++|  .-..++=+..|+..+...
T Consensus        18 ~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~al   89 (152)
T d2f62a1          18 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL   89 (152)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHC
Confidence            46889999999999999986333  333345666667899999999999985  223456688899998764

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.08  E-value=0.37  Score=30.29  Aligned_cols=61  Identities=16%  Similarity=0.177  Sum_probs=45.0

Q ss_pred             eeeEEEeccccccccchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecC
Q 043195           15 KYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKG   79 (162)
Q Consensus        15 ~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~   79 (162)
                      ..+|||..-+++. ...+..|...|++.|+++-+|..   +..+...+..|-..---+++|+-++
T Consensus         3 ~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~---~~~l~kq~~~A~~~~~~~~iiiG~~   63 (97)
T d1wu7a1           3 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIFGER   63 (97)
T ss_dssp             SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred             CceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCcHHHHHHHHHhcCCCeEEecCCc
Confidence            5789999888765 47899999999999999988753   4566667766666544455555543