Citrus Sinensis ID: 043222

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MARYGWNSGTNIVGNCFYMKREALYGKFSQKELHHLNESFGPSNELIISLQRSNQHKTIDNGILSSTLQQEAKFLASYNYEKNTLWRKQARWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAFASMPLLQTMCYSYYALQPFYSLPSWCLAIVPHLCLINGISLYPNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQVPASVALLSFVLSIILLLLGSVVLRMT
cccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHcEEccccHHHHcccccccccccccccccccccccHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccEEEccccHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccEcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcc
marygwnsgtnivgncfymkrealygKFSQKELhhlnesfgpsNELIISLQrsnqhktidngilSSTLQQEAKFLASYNYEKNTLWRKQARWksmfcnpsrsaflgsaASSLNDTLVQGTRWNCGLLENAFASMPLLQTMCYsyyalqpfyslpswclaivphlclingislypnpwfmnfSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKcfgmkqpcfsptnkvsddeQAKLHQlgkfnfhtstkFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWrkdkgqvpaSVALLSFVLSIILLLLGSVVLRMT
marygwnsgtnivgnCFYMKREALYGKFSQKELHHLNESFGPSNELIISLQRSNQHKTIDNGILSSTLQQEAKFLASYNYEKNTLWRKQARWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAFASMPLLQTMCYSYYALQPFYSLPSWCLAIVPHLCLINGISLYPNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQVPASVALLSFVLSIILLLLGSVVLRMT
MARYGWNSGTNIVGNCFYMKREALYGKFSQKELHHLNESFGPSNELIISLQRSNQHKTIDNGILSSTLQQEAKFLASYNYEKNTLWRKQARWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAFASMPLLQTMCYSYYALQPFYSLPSWCLAIVPHLCLINGISLYPNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQVPasvallsfvlsiillllgsvvlRMT
***YGWNSGTNIVGNCFYMKREALYGKFSQKELHHLNESFG*SNELIISLQ*****KTIDNGILSSTLQQEAKFLASYNYEKNTLWRKQARWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAFASMPLLQTMCYSYYALQPFYSLPSWCLAIVPHLCLINGISLYPNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCFGMKQPCFSP*********AKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQVPASVALLSFVLSIILLLLGSVVL***
***YG*NSGTNIVGNCFYMKREALYGKFSQKELHHLNESFGPSNELIISLQRSN*************LQQEAKFLASYNYEKNTLWRKQARWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAFASMPLLQTMCYSYYALQPFYSLPSWCLAIVPHLCLINGISLYPNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCFGMKQPCFSPTNKV******KLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQVPASVALLSFVLSIILLLLGSVVLRMT
MARYGWNSGTNIVGNCFYMKREALYGKFSQKELHHLNESFGPSNELIISLQRSNQHKTIDNGILSSTLQQEAKFLASYNYEKNTLWRKQARWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAFASMPLLQTMCYSYYALQPFYSLPSWCLAIVPHLCLINGISLYPNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQVPASVALLSFVLSIILLLLGSVVLRMT
MARYGWNSGTNIVGNCFYMKREALYGKFSQKELHHLNESFGPSNELIISLQRSNQHKTIDNGILSSTLQQEAKFLASYNYEKNTLWRKQARWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAFASMPLLQTMCYSYYALQPFYSLPSWCLAIVPHLCLINGISLYPNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQVPASVALLSFVLSIILLLLGSVVLRMT
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MARYGWNSGTNIVGNCFYMKREALYGKFSQKELHHLNESFGPSNELIISLQRSNQHKTIDNGILSSTLQQEAKFLASYNYEKNTLWRKQARWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAFASMPLLQTMCYSYYALQPFYSLPSWCLAIVPHLCLINGISLYPNPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQVPASVALLSFVLSIILLLLGSVVLRMT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
Q651X6728 Cellulose synthase-like p yes no 0.907 0.442 0.306 4e-39
Q8VYR4722 Cellulose synthase-like p yes no 0.904 0.444 0.282 7e-39
Q0WVN5751 Cellulose synthase-like p no no 0.926 0.438 0.282 1e-37
Q570S7760 Cellulose synthase-like p no no 0.833 0.389 0.294 2e-36
Q651X7737 Cellulose synthase-like p yes no 0.909 0.438 0.293 1e-35
Q0DXZ1745 Cellulose synthase-like p no no 0.904 0.430 0.286 1e-35
Q8VZK9729 Cellulose synthase-like p no no 0.760 0.370 0.301 6e-27
Q9AV711063 Cellulose synthase A cata no no 0.769 0.256 0.276 3e-25
Q69P511055 Cellulose synthase A cata no no 0.701 0.236 0.272 5e-23
A2Z1C81055 Cellulose synthase A cata N/A no 0.701 0.236 0.272 5e-23
>sp|Q651X6|CSLE6_ORYSJ Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1 Back     alignment and function desciption
 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 178/378 (47%), Gaps = 56/378 (14%)

Query: 9   GTNIVGNCFYM------KREALYGKFSQKELHHLNESFGPSNELIISLQRSNQHKTIDNG 62
           G +  G C Y+      +RE L GK   K+     E +G          +   H+ ID  
Sbjct: 365 GLDSAGGCLYIGTGCFHRREILCGKKFSKDY---KEDWGRG-------IKERGHENIDE- 413

Query: 63  ILSSTLQQEAKFLASYNYEKNTLWRKQ--------------------ARWKSMFCNPSRS 102
                ++++AK LA+  YE  T W  +                      W+S++  P R+
Sbjct: 414 -----IEEKAKSLATCTYELRTQWGNEIGVKYGCPVEDVITGLAIHCRGWESVYMEPQRA 468

Query: 103 AFLGSAASSLNDTLVQGTRWNCGLL------ENAF----ASMPLLQTMCYSYYALQPFYS 152
           AF+G A ++L  T++Q  RW+ G         N F      + L   M Y  Y L    S
Sbjct: 469 AFVGVAPATLAQTILQHKRWSEGNFTIFLSKHNTFLFGHGKISLQLQMGYCIYGLWAANS 528

Query: 153 LPSWCLAIVPHLCLINGISLYP---NPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSK 209
           LP+    ++P L L+ G  L+P   +PW   F  +F    L  L EAL +G ++  W + 
Sbjct: 529 LPTIYYVMIPALGLVKGTPLFPEIMSPWATPFIYVFCVKTLYSLYEALLSGDTLKGWWNG 588

Query: 210 QRIWMIKSITCYTYGTIDAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFL 269
           QR+WM+K IT Y YG ID I K  G+ +  F  T KVSD ++AK ++     F +S+   
Sbjct: 589 QRMWMVKRITSYLYGFIDTIRKLLGLSKMSFEITAKVSDGDEAKRYEQEILEFGSSSPEF 648

Query: 270 APLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQV 329
             + T+ +LN +    G+++ +++G  N  L QVIL   I++ + PI E M  RKDKG++
Sbjct: 649 VIIATVALLNFVCLVAGLSK-IMAGVWNVFLPQVILCGLIVITNIPIYEAMFVRKDKGRI 707

Query: 330 PASVALLSFVLSIILLLL 347
           P  V L S    ++  LL
Sbjct: 708 PLPVTLASIGFVMLAFLL 725
Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q8VYR4|CSLG2_ARATH Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1 Back     alignment and function description
>sp|Q0WVN5|CSLG3_ARATH Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2 Back     alignment and function description
>sp|Q570S7|CSLG1_ARATH Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1 Back     alignment and function description
>sp|Q651X7|CSLE1_ORYSJ Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2 Back     alignment and function description
>sp|Q0DXZ1|CSLE2_ORYSJ Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1 Back     alignment and function description
>sp|Q8VZK9|CSLE1_ARATH Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1 Back     alignment and function description
>sp|Q9AV71|CESA7_ORYSJ Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1 Back     alignment and function description
>sp|Q69P51|CESA9_ORYSJ Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1 Back     alignment and function description
>sp|A2Z1C8|CESA9_ORYSI Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
429326514 723 cellulose synthase-like protein [Populus 0.971 0.477 0.553 1e-105
224111026 723 predicted protein [Populus trichocarpa] 0.969 0.475 0.546 1e-102
255576868 711 cellulose synthase, putative [Ricinus co 0.918 0.458 0.488 1e-91
296083587 762 unnamed protein product [Vitis vinifera] 0.974 0.454 0.481 2e-86
297737188 822 unnamed protein product [Vitis vinifera] 0.969 0.418 0.439 4e-84
359477703 733 PREDICTED: cellulose synthase-like prote 0.971 0.470 0.447 2e-82
359477392 678 PREDICTED: cellulose synthase-like prote 0.825 0.432 0.478 3e-79
359477705 720 PREDICTED: cellulose synthase-like prote 0.935 0.461 0.451 2e-77
147785659 643 hypothetical protein VITISV_002996 [Viti 0.735 0.405 0.514 2e-75
255576870 762 cellulose synthase, putative [Ricinus co 0.918 0.427 0.439 9e-74
>gi|429326514|gb|AFZ78597.1| cellulose synthase-like protein [Populus tomentosa] Back     alignment and taxonomy information
 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/367 (55%), Positives = 257/367 (70%), Gaps = 22/367 (5%)

Query: 9   GTNIVGNCFYMKREALYGKFSQKELHHLNESFGPSNELIISLQRSNQHKTIDNGILSSTL 68
           G  + G  FYMKREALYG  S+K++  L +SFG SNE I+S+ +  Q+ +I N   SS L
Sbjct: 356 GPVLSGTGFYMKREALYGNLSEKDVMRLKQSFGHSNEFIMSIHKIYQYSSIKNTESSSKL 415

Query: 69  QQEAKFLASYNYEKNTLWRKQ---------ARWKSMFCNPSRSAFLGSAASSLNDTLVQG 119
           QQEA+FL+S  YEKNTLW +              S+FCNPS+ AFLGS+ ++LND LVQG
Sbjct: 416 QQEAQFLSSCTYEKNTLWVEDYFTGFILHCKGKTSVFCNPSKPAFLGSSTTNLNDLLVQG 475

Query: 120 TRWNCGLLE----------NAFASMPLLQTMCYSYYALQPFYSLPSWCLAIVPHLCLING 169
           TRWN GL E             + MPLLQTMCY Y ALQP Y LP WCLA +P LCL+NG
Sbjct: 476 TRWNSGLFEVTLSKFCPFIYGLSRMPLLQTMCYGYLALQPLYFLPLWCLATLPQLCLLNG 535

Query: 170 ISLYP---NPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTI 226
           I +YP   + WFM FS IFL SLLKHL E L+TG S+ T  ++QR+WM+KS+T YT+G++
Sbjct: 536 IPIYPQVSSSWFMVFSFIFLASLLKHLEEILSTGASIQTLLNEQRVWMMKSVTAYTFGSL 595

Query: 227 DAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGG 286
           DAI+KCFGM++  F PTNKV+DDEQ  L+Q+GK NF  ST  L P++TL++LNM++F GG
Sbjct: 596 DAIMKCFGMREASFLPTNKVADDEQVALYQMGKLNFQASTTILTPIITLIILNMVSFIGG 655

Query: 287 IARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQVPASVALLSFVLSIILLL 346
           +ARM I+G  NE  GQV LS YIL+ +YP+IE M  RKDKG+VP  V LLS V++I LL 
Sbjct: 656 VARMFIAGSWNETFGQVFLSLYILMVNYPVIEGMLLRKDKGRVPTPVTLLSLVITIFLLC 715

Query: 347 LGSVVLR 353
           LG + LR
Sbjct: 716 LGHMTLR 722

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111026|ref|XP_002315721.1| predicted protein [Populus trichocarpa] gi|222864761|gb|EEF01892.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576868|ref|XP_002529320.1| cellulose synthase, putative [Ricinus communis] gi|223531244|gb|EEF33089.1| cellulose synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296083587|emb|CBI23576.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737188|emb|CBI26389.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477703|ref|XP_002280696.2| PREDICTED: cellulose synthase-like protein G2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477392|ref|XP_002280640.2| PREDICTED: cellulose synthase-like protein G2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477705|ref|XP_002280742.2| PREDICTED: cellulose synthase-like protein G2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147785659|emb|CAN70913.1| hypothetical protein VITISV_002996 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576870|ref|XP_002529321.1| cellulose synthase, putative [Ricinus communis] gi|223531245|gb|EEF33090.1| cellulose synthase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TAIR|locus:2138116722 CSLG2 "AT4G24000" [Arabidopsis 0.667 0.328 0.308 8.9e-37
TAIR|locus:2138126760 CSLG1 "AT4G24010" [Arabidopsis 0.664 0.310 0.333 1.9e-36
TAIR|locus:2138106751 CSLG3 "AT4G23990" [Arabidopsis 0.667 0.315 0.324 9.2e-33
TAIR|locus:2012050729 CSLE1 "AT1G55850" [Arabidopsis 0.681 0.331 0.302 3.3e-30
TAIR|locus:21789351026 IRX3 "IRREGULAR XYLEM 3" [Arab 0.647 0.224 0.265 1.4e-24
TAIR|locus:21724571049 CESA4 "cellulose synthase A4" 0.673 0.227 0.275 2.3e-24
TAIR|locus:2124167985 IRX1 "IRREGULAR XYLEM 1" [Arab 0.645 0.232 0.268 1.4e-20
TAIR|locus:20400801065 CESA10 "cellulose synthase 10" 0.673 0.224 0.253 7.1e-19
TAIR|locus:21277761081 CESA1 "cellulose synthase 1" [ 0.673 0.221 0.261 2.3e-18
TAIR|locus:20977001145 CSLD3 "AT3G03050" [Arabidopsis 0.673 0.208 0.300 3e-17
TAIR|locus:2138116 CSLG2 "AT4G24000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 372 (136.0 bits), Expect = 8.9e-37, Sum P(2) = 8.9e-37
 Identities = 78/253 (30%), Positives = 143/253 (56%)

Query:    92 WKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAFAS----------MPLLQTMC 141
             W+S+FC+P+++AF G +   L D + Q  RW+ GLLE AF+           + LL ++ 
Sbjct:   449 WRSIFCSPTKAAFYGDSPKCLTDVIGQQIRWSVGLLEVAFSRYNPLTYGIKPLSLLMSLG 508

Query:   142 YSYYALQPFYSLPSWCLAIVPHLCLINGISLYP---NPWFMNFSCIFLCSLLKHLLEALN 198
             Y +YA  PF+ +P     I+P + LI+G+S++P   +PWF  +  +FL    + L + L 
Sbjct:   509 YCHYAFWPFWCIPLVVYGILPQVALIHGVSVFPKASDPWFWLYIILFLGGYAQDLSDFLL 568

Query:   199 TGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCFGMKQPCFSPTNKVSDD-EQAKLHQL 257
              GG+   W + QR+WM++ ++ + +G  +  LK   +    ++ T+K +DD EQ K ++ 
Sbjct:   569 EGGTYRKWWNDQRMWMVRGLSSFFFGFTEFTLKTLNLSTQGYNVTSKSNDDNEQMKRYEQ 628

Query:   258 GKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPII 317
               F+F  S+    P+ T+ ++N++AF  G+   + + G   +L +++L+ + ++   PI 
Sbjct:   629 EIFDFGPSSSMFLPITTVAIMNLLAFMRGLYG-IFTWGEGPVL-ELMLASFAVVNCLPIY 686

Query:   318 EVMAWRKDKGQVP 330
             E M  R D G++P
Sbjct:   687 EAMVLRIDDGKLP 699
GO:0000271 "polysaccharide biosynthetic process" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0016740 "transferase activity" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0016759 "cellulose synthase activity" evidence=ISS
GO:0016760 "cellulose synthase (UDP-forming) activity" evidence=IEA
GO:0030244 "cellulose biosynthetic process" evidence=IEA
TAIR|locus:2138126 CSLG1 "AT4G24010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138106 CSLG3 "AT4G23990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012050 CSLE1 "AT1G55850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172457 CESA4 "cellulose synthase A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124167 IRX1 "IRREGULAR XYLEM 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040080 CESA10 "cellulose synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127776 CESA1 "cellulose synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097700 CSLD3 "AT3G03050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_X000693
hypothetical protein (723 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
PLN02893734 PLN02893, PLN02893, Cellulose synthase-like protei 4e-71
PLN029151044 PLN02915, PLN02915, cellulose synthase A [UDP-form 3e-30
pfam03552716 pfam03552, Cellulose_synt, Cellulose synthase 9e-30
PLN02195977 PLN02195, PLN02195, cellulose synthase A 3e-26
PLN021891040 PLN02189, PLN02189, cellulose synthase 5e-26
PLN024001085 PLN02400, PLN02400, cellulose synthase 9e-25
PLN026381079 PLN02638, PLN02638, cellulose synthase A (UDP-form 5e-24
PLN024361094 PLN02436, PLN02436, cellulose synthase A 5e-21
PLN02190756 PLN02190, PLN02190, cellulose synthase-like protei 1e-16
PLN022481135 PLN02248, PLN02248, cellulose synthase-like protei 8e-16
>gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein Back     alignment and domain information 
 Score =  234 bits (600), Expect = 4e-71
 Identities = 124/379 (32%), Positives = 196/379 (51%), Gaps = 49/379 (12%)

Query: 9   GTNIVGN-CFYMKREALYGKFSQKELHHLNESFGPSNELIISLQRSNQHKTIDNGILSST 67
           G N VG  CF+ +R   YG              GPS+ ++  +   N    +D  I S  
Sbjct: 371 GPNYVGTGCFF-RRRVFYG--------------GPSSLILPEIPELNPDHLVDKSIKSQE 415

Query: 68  LQQEAKFLASYNYEKNTLW-------------------RKQAR-WKSMFCNPSRSAFLGS 107
           +   A  +A  NYE  T W                   R Q   WKS+FCNP R AFLG 
Sbjct: 416 VLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGD 475

Query: 108 AASSLNDTLVQGTRWNCGLLENAFA----------SMPLLQTMCYSYYALQPFYSLPSWC 157
           +  +L+D L Q  RW+ GLLE AF+          S+ LL  + Y++YA  P +S+P   
Sbjct: 476 SPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGVKSIGLLMGLGYAHYAFWPIWSIPITI 535

Query: 158 LAIVPHLCLINGISLYP---NPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWM 214
            A +P L L+NG+S++P   +PWF  +  +FL +  + LL+ L +GG++  W + QR+WM
Sbjct: 536 YAFLPQLALLNGVSIFPKASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWM 595

Query: 215 IKSITCYTYGTIDAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVT 274
           I+ ++ + +G ++ +LK  G+    F+ T+KV D+EQ+K ++ G F F  S+    PL T
Sbjct: 596 IRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQSKRYEQGIFEFGVSSPMFLPLTT 655

Query: 275 LVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMAWRKDKGQVPASVA 334
             ++N+++F  GIA++        L  Q+ L+ + ++  +PI E M  R D G++P  + 
Sbjct: 656 AAIINLVSFLWGIAQIFRQRNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKLPVKIT 715

Query: 335 LLSFVLSIILLLLGSVVLR 353
           L+S VL+  L L  S   +
Sbjct: 716 LISIVLAWALYLASSFAFK 734

Length = 734
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit Back     alignment and domain information
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase Back     alignment and domain information
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A Back     alignment and domain information
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase Back     alignment and domain information
>gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase Back     alignment and domain information
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A Back     alignment and domain information
>gnl|CDD|215122 PLN02190, PLN02190, cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
PF03552720 Cellulose_synt: Cellulose synthase; InterPro: IPR0 100.0
PLN02190756 cellulose synthase-like protein 100.0
PLN024001085 cellulose synthase 100.0
PLN026381079 cellulose synthase A (UDP-forming), catalytic subu 100.0
PLN024361094 cellulose synthase A 100.0
PLN021891040 cellulose synthase 100.0
PLN02195977 cellulose synthase A 100.0
PLN029151044 cellulose synthase A [UDP-forming], catalytic subu 100.0
PLN022481135 cellulose synthase-like protein 100.0
PLN02893734 Cellulose synthase-like protein 100.0
TIGR03030 713 CelA cellulose synthase catalytic subunit (UDP-for 100.0
PRK11498 852 bcsA cellulose synthase catalytic subunit; Provisi 100.0
PRK05454691 glucosyltransferase MdoH; Provisional 98.68
PRK14716504 bacteriophage N4 adsorption protein B; Provisional 98.21
PRK14583444 hmsR N-glycosyltransferase; Provisional 98.12
TIGR03111439 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 98.03
PRK11204420 N-glycosyltransferase; Provisional 98.03
COG1215439 Glycosyltransferases, probably involved in cell wa 97.49
cd04191254 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon 97.22
PRK11234 727 nfrB bacteriophage N4 adsorption protein B; Provis 96.95
COG2943 736 MdoH Membrane glycosyltransferase [Cell envelope b 96.72
PF13641228 Glyco_tranf_2_3: Glycosyltransferase like family 2 96.49
cd06435236 CESA_NdvC_like NdvC_like proteins in this family a 96.44
cd04190244 Chitin_synth_C C-terminal domain of Chitin Synthas 96.34
PF13632193 Glyco_trans_2_3: Glycosyl transferase family group 96.27
cd06437232 CESA_CaSu_A2 Cellulose synthase catalytic subunit 96.13
cd06421234 CESA_CelA_like CESA_CelA_like are involved in the 95.9
cd06427241 CESA_like_2 CESA_like_2 is a member of the cellulo 95.72
PF03142527 Chitin_synth_2: Chitin synthase; InterPro: IPR0048 94.91
cd04192229 GT_2_like_e Subfamily of Glycosyltransferase Famil 94.4
cd06434235 GT2_HAS Hyaluronan synthases catalyze polymerizati 92.78
PRK15489 703 nfrB bacteriophage N4 adsorption protein B; Provis 92.57
KOG2571862 consensus Chitin synthase/hyaluronan synthase (gly 89.44
cd02520196 Glucosylceramide_synthase Glucosylceramide synthas 84.09
cd06439251 CESA_like_1 CESA_like_1 is a member of the cellulo 83.08
cd02525249 Succinoglycan_BP_ExoA ExoA is involved in the bios 81.64
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals Back     alignment and domain information 
Probab=100.00  E-value=4.3e-103  Score=813.87  Aligned_cols=346  Identities=36%  Similarity=0.633  Sum_probs=319.7

Q ss_pred             CCCCCCCCCcceeccCcceeceeccCCCChh-------------------------------------------------
Q 043222            1 MARYGWNSGTNIVGNCFYMKREALYGKFSQK-------------------------------------------------   31 (355)
Q Consensus         1 ~~~~~~~qGp~y~GTGc~~rR~alyG~~~~~-------------------------------------------------   31 (355)
                      |+|+||+|||+|+||||||||+||||.+|++                                                 
T Consensus       265 ~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (720)
T PF03552_consen  265 MRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSKKKPKKRASKRRESSSPIFALEDIE  344 (720)
T ss_pred             ccccccCCCceeeecCcceechhhhCCCCCchhcccCcceeeeecccCCcccccccccchhccccccccccccccccccc
Confidence            7899999999999999999999999988752                                                 


Q ss_pred             --------------hhhhhhhhcCCchHHHHHHhhhccCCccCCCCCchHHHHHHhhhhcceecCCccccccC-------
Q 043222           32 --------------ELHHLNESFGPSNELIISLQRSNQHKTIDNGILSSTLQQEAKFLASYNYEKNTLWRKQA-------   90 (355)
Q Consensus        32 --------------~~~~~~~~fg~s~~~~~S~~~~~~~~~~~~~~~~~~~~~~a~~vasC~YE~~T~WG~ev-------   90 (355)
                                    +.++++++||+|++|++|+..++ ...+. ..++++++|||++|+||+||++|+||+||       
T Consensus       345 ~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~-~~~~~-~~~~~~~L~EA~~V~sC~YE~~T~WGkevGwiYGSv  422 (720)
T PF03552_consen  345 EGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQ-GGVPR-SPSPASLLEEAIHVASCGYEDKTEWGKEVGWIYGSV  422 (720)
T ss_pred             cccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHh-cCCCC-CCChHHHHHHHHHHhcCCccccCCcccccceEEEec
Confidence                          01366789999999999998543 33222 33458899999999999999999999999       


Q ss_pred             -------------CceeeecCCCCcccccccCCChhhhhhhhhhhccchhHHHh-----------cCCChhHHHHhhhhc
Q 043222           91 -------------RWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAF-----------ASMPLLQTMCYSYYA  146 (355)
Q Consensus        91 -------------GWrSvY~~p~~~AF~G~AP~~l~~~l~Qr~RWa~G~lqI~~-----------~~L~~~QrL~Y~~~~  146 (355)
                                   ||||+||+|+|+||+|+||+||++.|+|++|||+|++|||+           +||+++|||+|++++
T Consensus       423 tEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~fSr~~Pl~~g~~~rL~~lQrLaY~~~~  502 (720)
T PF03552_consen  423 TEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFFSRHCPLWYGYGGRLKFLQRLAYLNYM  502 (720)
T ss_pred             ccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeehhcCCchhccCCCCCcHHHHHHHHHHh
Confidence                         99999999999999999999999999999999999999999           589999999999999


Q ss_pred             ccccccHHHHHHHHHHHHHHHcCCcccc---CchHHHHHHHHHHHHHHHHHHHHHcCCccccccccceEEeeehhhHHHH
Q 043222          147 LQPFYSLPSWCLAIVPHLCLINGISLYP---NPWFMNFSCIFLCSLLKHLLEALNTGGSVLTWCSKQRIWMIKSITCYTY  223 (355)
Q Consensus       147 ~y~~~sip~l~y~l~P~l~Ll~g~~i~p---~~~~~~~~~lf~~~~~~~lle~~~~G~s~~~ww~~qr~w~i~~~sa~l~  223 (355)
                      +||++|+|++||+++|++||++|++++|   ++++++|+++|+++++++++|++|+|+++++||||||||+|+++++|+|
T Consensus       503 ~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~~wsG~si~~WWrnQq~W~I~~tSa~Lf  582 (720)
T PF03552_consen  503 LYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEFRWSGVSIREWWRNQQFWMIGGTSAHLF  582 (720)
T ss_pred             hhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHHHhccCcHHHhhcccceeeehhhHHHHH
Confidence            9999999999999999999999999999   6889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCceeeccCCCChhHHhhhhcccceecccchhHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHH
Q 043222          224 GTIDAILKCFGMKQPCFSPTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISG--GANELLG  301 (355)
Q Consensus       224 a~~~~llk~lg~~~~~F~VT~K~~~~~~~~~y~~~~f~f~~~s~l~iP~~~l~~lnl~aiv~gi~r~~~~~--~~~~~~~  301 (355)
                      |++++++|++|+++++|+||+|+.+|++.+.+  |.|+|+ ||++++|++|++++|++|+++|++|++.++  +|+++++
T Consensus       583 Avl~~iLK~lg~s~t~F~VTsK~~dde~~~~~--ely~f~-wS~LfiP~tTllilNLva~v~Gi~r~i~~g~~~~g~l~g  659 (720)
T PF03552_consen  583 AVLQGILKVLGGSETSFTVTSKVSDDEDDKYA--ELYIFK-WSPLFIPPTTLLILNLVAFVVGISRAINSGYGSWGPLLG  659 (720)
T ss_pred             HHHHHHHHHHcCCccceeeccccccccccccc--cccccc-ccchhhHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHH
Confidence            99999999999999999999999886654444  568899 899999999999999999999999988754  6899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCccchhHHHHHHHHHHHHHHHhhhcc
Q 043222          302 QVILSFYILLESYPIIEVMAWRKDKGQVPASVALLSFVLSIILLLLGSVVLR  353 (355)
Q Consensus       302 ~~~~~~w~v~~l~p~~~gl~~r~~k~~iP~~v~~~s~~l~~~f~~~~~~~~~  353 (355)
                      ++++++|+++|+|||++|||+|||  |+|+||++||++||++|+++|+.+.-
T Consensus       660 ~lf~~~wVvv~lyPf~kGL~~R~~--r~P~~v~v~S~lla~i~~llwv~i~~  709 (720)
T PF03552_consen  660 QLFFSFWVVVHLYPFLKGLFGRKD--RIPTSVIVWSVLLASIFSLLWVRIDP  709 (720)
T ss_pred             HHHHHHHHHHHhhHHHHhhhcccC--CcceeehHHHHHHHHHHHHHheeccc
Confidence            999999999999999999999986  59999999999999999999998753

The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
>PLN02190 cellulose synthase-like protein Back     alignment and domain information
>PLN02400 cellulose synthase Back     alignment and domain information
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information
>PLN02436 cellulose synthase A Back     alignment and domain information
>PLN02189 cellulose synthase Back     alignment and domain information
>PLN02195 cellulose synthase A Back     alignment and domain information
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit Back     alignment and domain information
>PLN02248 cellulose synthase-like protein Back     alignment and domain information
>PLN02893 Cellulose synthase-like protein Back     alignment and domain information
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) Back     alignment and domain information
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional Back     alignment and domain information
>PRK05454 glucosyltransferase MdoH; Provisional Back     alignment and domain information
>PRK14716 bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>PRK14583 hmsR N-glycosyltransferase; Provisional Back     alignment and domain information
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 Back     alignment and domain information
>PRK11204 N-glycosyltransferase; Provisional Back     alignment and domain information
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan Back     alignment and domain information
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A Back     alignment and domain information
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase Back     alignment and domain information
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin Back     alignment and domain information
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2 Back     alignment and domain information
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex Back     alignment and domain information
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily Back     alignment and domain information
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2 Back     alignment and domain information
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan Back     alignment and domain information
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis Back     alignment and domain information
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily Back     alignment and domain information
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 58/420 (13%), Positives = 111/420 (26%), Gaps = 127/420 (30%)

Query: 15  NCFYMKREALYGKFSQKELHHLNESFGPSNE----LIISLQRSNQHKTIDNGILSSTLQQ 70
           +C  ++ +      S++E+ H+  S           +     S Q + +    +   L+ 
Sbjct: 34  DCKDVQ-DMPKSILSKEEIDHIIMS--KDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRI 89

Query: 71  EAKFLAS---------------YNYEKNTLWRKQARWKSMFCN----------------P 99
             KFL S               Y  +++ L+     +     +                P
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 100 SRSAFL----GS-----AASSLNDTLVQ-----GTRW-NCGLLENAFASMPLLQTMCY-- 142
           +++  +    GS     A        VQ        W N     +    + +LQ + Y  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 143 --SYYALQ-PFYSLPSWCLAIVPHLCLINGISLYPNPWFMNFSCIFLCSLL-------KH 192
             ++ +      ++     +I   L  +     Y N             LL         
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN------------CLLVLLNVQNAK 257

Query: 193 LLEALNTGGSVLTWCSKQRIWMI---KSITCYTYGTIDAILKCFGMKQPCFSPTNKV-SD 248
              A N        C   +I +    K +T          L             +   + 
Sbjct: 258 AWNAFNLS------C---KILLTTRFKQVT--------DFLSAATTTHISLDHHSMTLTP 300

Query: 249 DEQAKLHQLGKFNFHTSTKFLAPLVTLVM---LNMIA--FTGGIAR-------------M 290
           DE   L  L K+      + L   V       L++IA     G+A               
Sbjct: 301 DEVKSL--LLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 291 VISGGANEL----LGQVILSFYILLESYPI-IEVMA--WRKDKGQVPASVALLSFVLSII 343
           +I    N L      ++     +   S  I   +++  W          V       S++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
4hg6_A 802 Cellulose synthase subunit A; membrane translocati 99.85
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} Back     alignment and structure
Probab=99.85  E-value=1.7e-20  Score=201.54  Aligned_cols=214  Identities=15%  Similarity=0.248  Sum_probs=150.7

Q ss_pred             CceeeecCCCCcccccccCCChhhhhhhhhhhccchhHHHh-------cCCChhHHHHhhhhcccccccHHHHHHHHHHH
Q 043222           91 RWKSMFCNPSRSAFLGSAASSLNDTLVQGTRWNCGLLENAF-------ASMPLLQTMCYSYYALQPFYSLPSWCLAIVPH  163 (355)
Q Consensus        91 GWrSvY~~p~~~AF~G~AP~~l~~~l~Qr~RWa~G~lqI~~-------~~L~~~QrL~Y~~~~~y~~~sip~l~y~l~P~  163 (355)
                      |||++|++ + +...+.+|+++.+.++||.||++|.+|+++       +++++.||++|+....+++.+++.++|+++|+
T Consensus       354 G~ri~~~~-~-~~~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~~~pl~~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~  431 (802)
T 4hg6_A          354 GWKSLYID-R-AMIAGLQPETFASFIQQRGRWATGMMQMLLLKNPLFRRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPL  431 (802)
T ss_dssp             TCCEEECC-C-CCEEECCCCSHHHHHHHHHHHHHHHHHHHHHSCTTSCSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CCeEEEec-C-CEEEecCCCCHHHHHHHHHHHHccHHHHHHHhCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999984 3 455799999999999999999999999998       67999999999999999999999999999999


Q ss_pred             HHHHcCCccccCchHHHHHHHHHHHHHHH--HHHHHHcCCccccccccceEEeeehhhHHHHHHHHHHHHHHcCCCCcee
Q 043222          164 LCLINGISLYPNPWFMNFSCIFLCSLLKH--LLEALNTGGSVLTWCSKQRIWMIKSITCYTYGTIDAILKCFGMKQPCFS  241 (355)
Q Consensus       164 l~Ll~g~~i~p~~~~~~~~~lf~~~~~~~--lle~~~~G~s~~~ww~~qr~w~i~~~sa~l~a~~~~llk~lg~~~~~F~  241 (355)
                      +++++++++++.....++.+ ++.+.+..  +......+.. ..||. +    +..+...++.+..++..++++++.+|+
T Consensus       432 ~~ll~~~~~~~~~~~~~~~~-~lp~~l~~~~~~~~~~~~~r-~~~~~-~----l~~~~~~~~~~~a~l~~l~~~~~~~f~  504 (802)
T 4hg6_A          432 IYLFFGIEIFVATFEEVLAY-MPGYLAVSFLVQNALFARQR-WPLVS-E----VYEVAQAPYLARAIVTTLLRPRSARFA  504 (802)
T ss_dssp             HHHHHCCCCSCCCHHHHHHH-HHHHHHHHHHHHHHHHTTTS-CTTHH-H----HHHHHHHHHHHHHHHHHHHSTTCCCCC
T ss_pred             HHHHHhHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHhcCcH-HHHHH-H----HHHHHHHHHHHHHHHHHHhCCCCCcce
Confidence            99999998887221111111 11111111  1112222221 12332 2    222223333444455556788999999


Q ss_pred             eccCCCChhHHhhhhcccceecccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043222          242 PTNKVSDDEQAKLHQLGKFNFHTSTKFLAPLVTLVMLNMIAFTGGIARMVISGGANELLGQVILSFYILLESYPIIEVMA  321 (355)
Q Consensus       242 VT~K~~~~~~~~~y~~~~f~f~~~s~l~iP~~~l~~lnl~aiv~gi~r~~~~~~~~~~~~~~~~~~w~v~~l~p~~~gl~  321 (355)
                      ||+|+.+.+..         +  .+++..|+++++++|++++++|+++......  .....++.++|.++|++.+..++.
T Consensus       505 VT~Kg~~~~~~---------~--~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~l~~l~~~~~  571 (802)
T 4hg6_A          505 VTAKDETLSEN---------Y--ISPIYRPLLFTFLLCLSGVLATLVRWVAFPG--DRSVLLVVGGWAVLNVLLVGFALR  571 (802)
T ss_dssp             CCCCCCCCSSC---------C--BCTTCHHHHHHHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ECCCCcccccc---------c--hhhHHHHHHHHHHHHHHHHHHHHHHHhccCC--ccchhhhhhHHHHHHHHHHHHHHH
Confidence            99998764421         1  1357789999999999999999999875432  233456777888888888877776


Q ss_pred             hhhcC
Q 043222          322 WRKDK  326 (355)
Q Consensus       322 ~r~~k  326 (355)
                      ...++
T Consensus       572 ~~~~~  576 (802)
T 4hg6_A          572 AVAEK  576 (802)
T ss_dssp             TTBCC
T ss_pred             HHhcC
Confidence            54443

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00