Citrus Sinensis ID: 043223

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFISTIGNGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGILEN
Secondary Structure (PSIPRED)
cccccHHHHHHHcccccHHHHHHHHcccHHHHHHcccHHHHHHHHHHHcccccccEEEEEEEccccccEEEEEcccccccccccEEEccccccccccccEEEEEEEccEEEEEEccccEEEEccccccEEEccccccccccEEEEEEcccccccccEEcEEEEEEcccccEEEEcccccccccccccEEEcccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHccccEEEEEEEcccEEEEEEEcccccccccccccccccccccccccEEEEEEEEccEEEEEEcccccEEEEccccccEEEEcccccccEEEEEEEccccccEEEEEEEEEEEEEEccccEEEEEccccccccccccEEEEcEEEEEEEEcc
Coil and Loop (DISEMBL)
MAKLPQDIVADILSRLPVKSLLRfkcvskpwfslisdSQFAKTQLKQAKSDCSGNIRRVLlttsplqsidyeafgfgdgsdsnitvqlgypgekvpeddadiigscnglvcidfdstnmvlwnpstrvsrelprpapfpeqVIRGFIStigngnvsrETKVQVFSLKNNSWKEIQYFHARIDIyglgvlsngklhwlgilen
Flexible Loop (DISEMBL)
maklpqdivadilsrlpvkslLRFKCVSKPWFSLISDSQFAKTQLKqaksdcsgniRRVLLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIStigngnvsRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGILEN
Low Complexity Region (SEG)
MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFISTIGNGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGILEN
Disordered region (IsUnstruct)
*******IVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWNPSTRV*********FPEQVIRGFISTIGNGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGIL**
Disordered Region (DISOPRED)
MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFISTIGNGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGILEN
Disordered Region (DISEMBL)
MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFA*********DCSGNIRRVLLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFISTIGNGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGILEN
Disordered Region (DISPRO)
*AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFISTIGNGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGILEN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFISTIGNGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGILEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9SU30	413	F-box protein CPR30 OS=Ar	yes	no	0.910	0.445	0.314	4e-17
Q8GXC7	427	F-box/kelch-repeat protei	no	no	0.945	0.447	0.308	1e-14
Q9LIR8	364	F-box/kelch-repeat protei	no	no	0.618	0.343	0.343	7e-13
Q7X7A9	312	F-box protein At1g11270 O	no	no	0.896	0.580	0.294	1e-12
Q9LU24	360	Putative F-box protein At	no	no	0.767	0.430	0.259	3e-12
Q9SUY0	402	F-box protein At4g22390 O	no	no	0.920	0.462	0.262	4e-12
Q9LPW2	416	Putative F-box/kelch-repe	no	no	0.925	0.449	0.266	8e-12
Q9LUP1	381	Putative F-box/kelch-repe	no	no	0.920	0.488	0.233	2e-11
Q9C800	441	Putative F-box protein At	no	no	0.905	0.414	0.292	2e-11
Q9ZPS1	334	Putative F-box protein At	no	no	0.915	0.553	0.282	5e-11

>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 51/235 (21%)

Query: 1   MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
           MA +P DIV DI  RLP K+L+R + +SKP + LI+D  F ++ L +     +G+   +L
Sbjct: 1   MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQ--TGDHLMIL 58

Query: 61  LTTS-PLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNM 119
           L  +  L S+D ++      SD    ++ G P E        + GS NGL+ +    T++
Sbjct: 59  LRGALRLYSVDLDS--LDSVSDVEHPMKRGGPTE--------VFGSSNGLIGLSNSPTDL 108

Query: 120 VLWNPSTR-VSRELPRPAPFPE-QVIRGFI-STIGNGNVSRETK---------------- 160
            ++NPSTR + R  P     P+    RG++   +G  +VS + K                
Sbjct: 109 AVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELG 168

Query: 161 ------VQVFSLKNNSWKEIQ----------YFHARIDIY--GLGVLSNGKLHWL 197
                 V+VFSLK NSWK I+          YF+  + +Y  G GVL+   LHW+
Sbjct: 169 CSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHL-LYRRGYGVLAGNSLHWV 222

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 111/246 (45%), Gaps = 55/246 (22%)

Query: 4   LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQA-KSDCSGNIRRVLLT 62
           LP +I+ +IL RLP KS+ RF+CVSK + +L SD  FAK  L    +++   ++ R L+ 
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 63  TSP-LQSIDYEAFGFGDGSDSNITVQLGYPGEKVPE---------------DD------- 99
           +S  L S+D+ + G  DG      V+  YP +  P                DD       
Sbjct: 96  SSHNLYSLDFNSIG--DGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKL 153

Query: 100 ---------ADIIGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRP-APFPEQVIRGFIST 149
                     +I+GS NGLVCI      + L+NP+T  S+ LP    P   +  R    T
Sbjct: 154 NAKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQT 213

Query: 150 IGNG--NVSRETKV-------------QVFSLKNNSWKEI---QYFHARIDIYGLGVLSN 191
            G G   ++ + K+              V+SLK +SW+ I    Y H     Y  GV  N
Sbjct: 214 YGFGFDGLTDDYKLVKLVATSEDILDASVYSLKADSWRRICNLNYEHND-GSYTSGVHFN 272

Query: 192 GKLHWL 197
           G +HW+
Sbjct: 273 GAIHWV 278

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 9/134 (6%)

Query: 4   LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQ---LKQAKSDCSGNIRRVL 60
           LP +++ +IL RLPVKSL RFKCV   W SLIS++ FA      L+ +K+  S      +
Sbjct: 14  LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGV 73

Query: 61  LTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVC--IDFDSTN 118
           +TTS             + S   ++    + GE +  D   ++G+C+GLVC  +D+D + 
Sbjct: 74  ITTSRYHLKSCCIHSLYNASTVYVS---EHDGELLGRDYYQVVGTCHGLVCFHVDYDKS- 129

Query: 119 MVLWNPSTRVSREL 132
           + LWNP+ ++ + L
Sbjct: 130 LYLWNPTIKLQQRL 143

Arabidopsis thaliana (taxid: 3702)

>sp|Q7X7A9|FB4_ARATH F-box protein At1g11270 OS=Arabidopsis thaliana GN=At1g11270 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 91/224 (40%), Gaps = 43/224 (19%)

Query: 4   LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLLTT 63
           LP D+V  IL RLPV+SLLRFKCVS  W S I    F + QL +       ++  V    
Sbjct: 35  LPHDVVGLILERLPVESLLRFKCVSNQWKSTIESQCFQERQLIRRMESRGPDVLVVSFAD 94

Query: 64  SPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWN 123
                 D + +G      S+I     +P            GSC GL+CI    +  ++ N
Sbjct: 95  ------DEDKYGRKAVFGSSIVSTFRFPTLHT----LICYGSCEGLICIYCVYSPNIVVN 144

Query: 124 PSTRVSRELPR------------------PAP---FPEQVIRGFISTIGNGNVSR----- 157
           P+T+  R  P                   P P   F +  + G    +   N S      
Sbjct: 145 PATKWHRSCPLSNLQQFLDDKFEKKEYDFPTPKLAFGKDKLNGTYKQVWLYNSSEFRLDD 204

Query: 158 ETKVQVFSLKNNSWKEIQYFHA----RIDIYGLGVLSNGKLHWL 197
            T  +VF   NN+W+   Y H     RI+ Y   V S+G +HWL
Sbjct: 205 VTTCEVFDFSNNAWR---YVHPASPYRINDYQDPVYSDGSVHWL 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 26/181 (14%)

Query: 4   LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLLTT 63
           LP+++  +IL RL +K L RF+CV K W  LI+D  F +T    + +      + V    
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETYRDMSPA------KFVSFYD 58

Query: 64  SPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWN 123
                +D E      G    IT +L +P ++   D++  +  C+G +C+   +  +++WN
Sbjct: 59  KNFYMLDVE------GKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVTLKNHTLMVWN 112

Query: 124 PSTRVSRELPRPAPFPEQVIRGF-----------ISTIGNGNVSRETKVQVFSLKNNSWK 172
           P ++  + +P P  + +  I GF           ++ I   +VS      VF  +  SW 
Sbjct: 113 PFSKQFKIVPNPGIYQDSNILGFGYDPVHDDYKVVTFIDRLDVS---TAHVFEFRTGSWG 169

Query: 173 E 173
           E
Sbjct: 170 E 170

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 46/232 (19%)

Query: 1   MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
           MA+ P D++ ++  RL   +L++ + +SKP FSLI   +F  + L++ + +   ++  +L
Sbjct: 1   MAECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRR-RLETGEHLMILL 59

Query: 61  LTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMV 120
                L++++ ++    + SD    +Q G           ++ GS NG++ +     ++ 
Sbjct: 60  RGPRLLRTVELDS--PENVSDIPHPLQAG--------GFTEVFGSFNGVIGLCNSPVDLA 109

Query: 121 LWNPSTRVSRELP-RPAPFPEQVIR--------GFISTIGNGNVSR-------------- 157
           ++NPSTR    LP  P  FPE+ I         G+ S   +  V R              
Sbjct: 110 IFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFP 169

Query: 158 -ETKVQVFSLKNNSWKE-----------IQYFHARIDIYGLGVLSNGKLHWL 197
              +V+VFSLK NSWK            I Y++  +   G GV+ N  LHW+
Sbjct: 170 CPVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWI 221

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2

 Score = 70.5 bits (171), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 42/229 (18%)

Query: 2   AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLL 61
           + LP D+V +I  +LPVK+L+RFK +SK W S +    F++  LK A+     + + +++
Sbjct: 31  SSLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSHVDHPKVMII 90

Query: 62  TTS-------PLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDF 114
           T           ++I  E+  F   +  N      +P             SC+G+ CI  
Sbjct: 91  TEKWNPDIEISFRTISLESVSFLSSALFNFPRGFHHPIYAS--------ESCDGIFCIHS 142

Query: 115 DST-NMVLWNPSTRVSRELPRPAPF---------PEQVIRGFIST--------------- 149
             T ++ + NP+TR  R+LP PA F             +R  I                 
Sbjct: 143 PKTQDIYVVNPATRWFRQLP-PARFQIFMHKLNPTLDTLRDMIPVNHLAFVKATDYKLVW 201

Query: 150 IGNGNVSRETKVQVFSLKNNSWKEIQYFHA-RIDIYGLGVLSNGKLHWL 197
           + N + SR TK +VF  K N+W+ +    + RI        +NG L+W 
Sbjct: 202 LYNSDASRVTKCEVFDFKANAWRYLTCIPSYRIYHDQKPASANGTLYWF 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUP1|FBK61_ARATH Putative F-box/kelch-repeat protein At3g17570 OS=Arabidopsis thaliana GN=At3g17570 PE=4 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 24/210 (11%)

Query: 4   LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLLTT 63
           LP+D+  +ILSR+P  SL + K   K W++L  D +F K  + +A+ +       + L +
Sbjct: 5   LPRDLETEILSRVPATSLQKLKPTCKRWYTLFKDPEFLKKHVGRAEREV------ISLMS 58

Query: 64  SPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMVLWN 123
             + S+     G     +    +      E V   D   I  CNGL+    D + +V+WN
Sbjct: 59  LRVYSLSVNLSGIHSSVEMTGMLNSLKDSEDVKISD---ITECNGLLLCTTDDSRLVVWN 115

Query: 124 PSTRVSRELPRPAPFPEQVIRGFISTIGNGNVSRET---------------KVQVFSLKN 168
           P T  +R +P  +  P ++ + F+    N N SR +               + +++   +
Sbjct: 116 PYTGETRWIPYKSNSPYEMYQKFVLGYDNTNKSRYSYKILRCYHGLIDFGYEFEIYEFNS 175

Query: 169 NSWKEIQYFHARIDIYGLGVLSNGKLHWLG 198
           +SW+              GV   G  +W  
Sbjct: 176 HSWRRFYDNSPNCSFESKGVTLKGNTYWFA 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530 OS=Arabidopsis thaliana GN=At1g33530 PE=4 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 91/212 (42%), Gaps = 29/212 (13%)

Query: 2   AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLL 61
            +LP  +V +IL RLPVK L+R K +SK W SLI     A+  L+  +        ++ +
Sbjct: 95  VELPDVLVEEILQRLPVKYLVRLKSISKGWKSLIESDHLAEKHLRLLEKKYGLKEIKITV 154

Query: 62  TTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADII---GSCNGLVCI-DFDST 117
             S  +SI  + F    G ++            +  D  D++   GSCNGLVC+ + DS 
Sbjct: 155 ERSTSKSICIKFFSRRSGMNA------------INSDSDDLLRVPGSCNGLVCVYELDSV 202

Query: 118 NMVLWNPSTRVSRELPRP------APFPEQVIRGFISTIGNGNVSRETKVQVFSLKNNSW 171
            + L NP T V+R L  P        F   V+ G    +      R   V VF L  N W
Sbjct: 203 YIYLLNPMTGVTRTLTPPRGTKLSVGFGIDVVTGTYKVMVLYGFDRVGTV-VFDLDTNKW 261

Query: 172 KEIQYFHARIDIYGL------GVLSNGKLHWL 197
           ++       + +  +       V  NG L WL
Sbjct: 262 RQRYKTAGPMPLSCIPTPERNPVFVNGSLFWL 293

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPS1|FB94_ARATH Putative F-box protein At2g02030 OS=Arabidopsis thaliana GN=At2g02030 PE=4 SV=1

 Score = 67.8 bits (164), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 100/241 (41%), Gaps = 56/241 (23%)

Query: 4   LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSD-------CSGNI 56
           +P +IV +IL RLPVKSL RF+ VSK W +LI+   F K  +   KS        C   +
Sbjct: 39  IPNEIVEEILVRLPVKSLTRFQTVSKHWRTLITSKYFGKRHMALEKSKGCKLLFVCDDFV 98

Query: 57  RRVLLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDS 116
            R   T   L+++  E     +G +     + GY G        DI  SC+GLVC  +D+
Sbjct: 99  DRAEDTLF-LKTVALEKTSVSEGDEQAFEFE-GYKG------FLDISESCDGLVCF-YDT 149

Query: 117 TNMV-LWNPSTRVSRELP------------------RPAPFPEQVIRGFIST----IGNG 153
           T  V + NP+T +  ELP                   P   P  V+   ++     +G  
Sbjct: 150 TRAVEVMNPATTMFIELPLSRIQQLCIYKPNPEVELEPVQDPNPVLDPVMTCSQIGVGKD 209

Query: 154 NVSRETKV--------------QVFSLKNNSWKEIQYF---HARIDIYGLGVLSNGKLHW 196
           +VS   K+              +V  L    W+ +      H +I      V +NG L+W
Sbjct: 210 SVSGSYKLVWMYNTSPATPPTCEVLDLDGKKWRFVNTTSLDHHQILCDQRPVFANGSLYW 269

Query: 197 L 197
           L
Sbjct: 270 L 270

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
224129168	374	predicted protein [Populus trichocarpa]	0.990	0.534	0.436	6e-38
224060349	364	predicted protein [Populus trichocarpa]	0.980	0.543	0.433	9e-37
224060347	372	predicted protein [Populus trichocarpa]	0.965	0.524	0.401	2e-34
255554010	406	ubiquitin-protein ligase, putative [Rici	0.950	0.472	0.404	1e-33
224128980	360	predicted protein [Populus trichocarpa]	0.955	0.536	0.390	4e-32
255558738	369	ubiquitin-protein ligase, putative [Rici	0.955	0.523	0.379	8e-31
255551523	358	ubiquitin-protein ligase, putative [Rici	0.960	0.541	0.390	5e-26
255554012	257	ubiquitin-protein ligase, putative [Rici	0.930	0.731	0.403	5e-26
225433770	360	PREDICTED: F-box/kelch-repeat protein At	0.925	0.519	0.353	1e-24
224098774	175	predicted protein [Populus trichocarpa]	0.792	0.914	0.426	2e-24

>gi|224129168|ref|XP_002328907.1| predicted protein [Populus trichocarpa] gi|222839337|gb|EEE77674.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 96/220 (43%), Positives = 127/220 (57%), Gaps = 20/220 (9%)

Query: 1   MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
           + KLP +I+++ILSRLPVK L+RFKCVSK W SLIS  +F K  LK+ K D + N  ++ 
Sbjct: 5   IPKLPSEIISEILSRLPVKCLVRFKCVSKTWRSLISHPEFVKNHLKRTKEDTNANHYKIF 64

Query: 61  LTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVC-IDFDSTNM 119
           L+T P  SID EA  + D  D+ +T QL +P         +I+GSCNGLVC +  D+  +
Sbjct: 65  LSTDPHLSIDPEA--YFDADDNLLTTQLKFPVSYPEYSYIEILGSCNGLVCGLIHDNPLI 122

Query: 120 VLWNPSTRVSRELPRPAPFPEQVIRGF---------------ISTIGNGN--VSRETKVQ 162
            +WNPSTR SREL  P    +    GF               IST  N     + ETKV+
Sbjct: 123 YIWNPSTRESRELAIPGSSEDDAFYGFGYDVKLDDYKIVRVSISTSTNSTDGSNSETKVE 182

Query: 163 VFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGILEN 202
           VF+LK+N W+ IQ     + + G G L+NG LHWL   EN
Sbjct: 183 VFTLKSNIWRTIQDLRCSVLLEGPGTLANGALHWLVRQEN 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060349|ref|XP_002300155.1| predicted protein [Populus trichocarpa] gi|222847413|gb|EEE84960.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 132/226 (58%), Gaps = 28/226 (12%)

Query: 1   MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
           M+KLPQDI+ DIL+ LPVKSL+RFKCV KPW  LISD +F K  LK+A    + N +R+L
Sbjct: 1   MSKLPQDIIVDILTYLPVKSLVRFKCVCKPWQLLISDPRFVKLHLKRAIEGNNINRQRLL 60

Query: 61  LTTSPL-QSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDD---ADIIGSCNGLVCI--DF 114
           +   PL  S+D+EA   GDG   N  ++L YP      +    A I GSC+GLVCI    
Sbjct: 61  VAAEPLYSSVDFEAASDGDG--INAVMELPYPSAASRTESFAFASIRGSCDGLVCIRNGG 118

Query: 115 DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFISTIGNGNVSRETKV------------- 161
           D  +M LWNPSTR S++LP+P+   ++   GF++ +G  +   + K+             
Sbjct: 119 DVHDMFLWNPSTRESKKLPKPSSSVQK--HGFLTGLGYDSTIDDYKLVIACLTTANGSHQ 176

Query: 162 ----QVFSLKNNSWKEIQYFHARIDIY-GLGVLSNGKLHWLGILEN 202
               +VF+LK NSW+ IQ  H+ I +  G GV  NG LHWLG  E 
Sbjct: 177 IMAPEVFTLKTNSWRRIQGIHSGITLEGGAGVFWNGALHWLGKQET 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060347|ref|XP_002300154.1| predicted protein [Populus trichocarpa] gi|222847412|gb|EEE84959.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 123/224 (54%), Gaps = 29/224 (12%)

Query: 1   MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
           M+KLPQDI+ DIL+ LPVKSLLRFKCV K W SLISD +F K+ LK A+   S   +R+L
Sbjct: 1   MSKLPQDIMVDILTYLPVKSLLRFKCVCKLWHSLISDPKFVKSHLKTAREVNSNKSQRLL 60

Query: 61  LTTSPLQSIDYEAFGFGDGSDSNITVQLGYPG--EKVPEDDADIIGSCNGLVCIDFDSTN 118
           L+T   QS+D+EA   GD  + N   +L YP      P     I+GSC+GL+C+  D   
Sbjct: 61  LSTRTPQSVDFEAASEGD--EDNAVQELEYPDVVRCSPTYFIGIMGSCDGLICLFVDYAK 118

Query: 119 MVLWNPSTRVSRELPRPAPFPEQVIRGF------------------ISTIGNGNVSRETK 160
           +VLWNPSTR  +E+P+P+        GF                  I +    + S +  
Sbjct: 119 LVLWNPSTRDYKEMPKPS-----CDHGFDFFAGIGYDSSNDDYKFVIPSCTTADGSEQIM 173

Query: 161 VQVFSLKNNSWKEIQYFHARIDIYGL--GVLSNGKLHWLGILEN 202
           V+V +LK N W+++        + G   G+  NG +HWLG  EN
Sbjct: 174 VEVLTLKTNVWRKVPEICQGTTLVGAYRGLFCNGAVHWLGKQEN 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554010|ref|XP_002518045.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223542641|gb|EEF44178.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/220 (40%), Positives = 131/220 (59%), Gaps = 28/220 (12%)

Query: 1   MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
           ++ LP+D++ +ILSR+PVK LLRFKCVSK W S+ISD +FAK QLK+AK + + +  R+L
Sbjct: 50  ISTLPEDLIVEILSRVPVKPLLRFKCVSKSWNSIISDPRFAKLQLKRAKENSNISCNRLL 109

Query: 61  LTTSPLQSIDYEAFGFGDGSDSNITVQLGYPG--EKVPEDDADIIGSCNGLVCIDFDSTN 118
           L+T   +S+D+EA  F D   SN    + +P   +  P     I+GSC+GLVC+  D   
Sbjct: 110 LSTWSPRSLDFEA--FCDDDLSNTITNVSFPAIVKGPPTFYVRILGSCDGLVCLLDDYGT 167

Query: 119 MVLWNPSTRVSRELPRPAPFPEQVIRGFISTIG------------------NGNVSRETK 160
           M LWNP+TR  +ELP+P      V R F+  IG                  +GN   ET 
Sbjct: 168 MFLWNPTTRQYKELPKPK---GAVYRMFLHGIGYNFSTDDYGVVFASRFTDDGN--EETT 222

Query: 161 VQVFSLKNNSWKEIQYFHARIDIYGL-GVLSNGKLHWLGI 199
           V++++LKNN+W++I+   +  +  G  G+  NG L+WL +
Sbjct: 223 VELYTLKNNTWRKIEDVDSTPEPSGRSGIFWNGGLYWLKV 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128980|ref|XP_002328860.1| predicted protein [Populus trichocarpa] gi|222839290|gb|EEE77627.1| predicted protein [Populus trichocarpa]

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/220 (39%), Positives = 125/220 (56%), Gaps = 27/220 (12%)

Query: 1   MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
           M+KLPQ+I+ DIL+ LP KSL++FKCV + W SLISD QFAK  LK+A  D + N +R+L
Sbjct: 1   MSKLPQEIIVDILTYLPAKSLIKFKCVCRSWRSLISDPQFAKLHLKRAHEDENINRQRLL 60

Query: 61  LTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADI---IGSCNGLVCIDFDST 117
           +   PL S+D+EA    DG + N  V+L YP  +   D   +   +GSC+G+VCI  +  
Sbjct: 61  IAADPLYSVDFEA--ASDGDNGNTLVKLSYPNAESHNDSFAVGLFLGSCDGIVCILNEVD 118

Query: 118 NMVLWNPSTRVSRELPRPAPFPEQVIRGFISTIGNGNVSRETK----------------- 160
           ++VLWNPSTR S++L  P      + + F + +G  + + + K                 
Sbjct: 119 SVVLWNPSTRESKKLSGPT---SSLHKDFSTGLGYDSSTDDYKMVIASSATASTRSDQIM 175

Query: 161 VQVFSLKNNSWKEIQYFHARIDIYG--LGVLSNGKLHWLG 198
           V+VF+LK N+W+ +Q     I +     G   NG L WLG
Sbjct: 176 VEVFTLKTNTWRTVQGSLPGITLGSNYYGEFWNGALLWLG 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558738|ref|XP_002520393.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223540440|gb|EEF42009.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 119/208 (57%), Gaps = 15/208 (7%)

Query: 3   KLPQDIVADILSRLPVKSLLRFKCVSKPWFSLI-SDSQFAKTQLKQAKSDCSGNIRRVLL 61
           +LP +I+ DILSRLPVK L++FKCV + W  LI SD +FAK  L++     + ++ R+LL
Sbjct: 7   QLPFEIIIDILSRLPVKHLIQFKCVCRTWQYLISSDPEFAKLHLERVLQVTNVHLHRLLL 66

Query: 62  TTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTN-MV 120
           +  P QS+D EA  + D  D+ +  +  +P     +DD + +GSCNGL+   F S + + 
Sbjct: 67  SADPFQSVDMEA--YCDADDNFLIREHRFPVRNPEDDDFEFVGSCNGLISAVFGSDHEIT 124

Query: 121 LWNPSTRVSRELPRPAPFPEQVI---RGFISTIGNGNVSR--------ETKVQVFSLKNN 169
           +WNPST  SR+LP P    E  +    G+ S + +  + R        E +++VF+LK N
Sbjct: 125 VWNPSTGESRKLPAPTSSTEDKLFYGFGYDSKLDDYKIVRGASSASCNEVQMEVFNLKGN 184

Query: 170 SWKEIQYFHARIDIYGLGVLSNGKLHWL 197
            W+ IQ  H  +   G  +  NG LHWL
Sbjct: 185 RWRAIQNLHCNVRFQGSAIALNGILHWL 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551523|ref|XP_002516807.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223543895|gb|EEF45421.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/210 (39%), Positives = 115/210 (54%), Gaps = 16/210 (7%)

Query: 1   MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQA-KSDCSGNIR-R 58
           MA L QD+V  IL RLPVKSL RFK V K W+ LISD  F    L  A K++C    R R
Sbjct: 1   MANLVQDVVLHILLRLPVKSLCRFKVVCKSWWLLISDPHFISMHLSLATKNNCINCHRWR 60

Query: 59  VLLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTN 118
           + LT+  L S+   + G+ + SD  I ++LGYP +    D+   IGSCNGL+C+  +   
Sbjct: 61  LCLTSFSLPSV--YSVGY-EASDRAIAIKLGYPLKSDCYDEVKFIGSCNGLLCVASEPGV 117

Query: 119 MVLWNPSTRVSRELPRPA---PF-----PEQVIRGFISTIGNG---NVSRETKVQVFSLK 167
           ++L NPSTR ++E+PR     PF     P     G+  +I +     +S    V V+S+K
Sbjct: 118 LLLLNPSTRAAQEIPRLGNRRPFTQSSLPYMYGFGYAHSINDYKLVKISCRGCVFVYSVK 177

Query: 168 NNSWKEIQYFHARIDIYGLGVLSNGKLHWL 197
            NSW+ +  F   I     G+  NG +HW+
Sbjct: 178 ENSWRSVGGFPYSILALDPGIQLNGAIHWV 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554012|ref|XP_002518046.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223542642|gb|EEF44179.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 121/203 (59%), Gaps = 15/203 (7%)

Query: 1   MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCS-GNIRRV 59
           M+KLPQD++ +ILSR+PVK L+RFKC+ K W SLIS+ +FAK QLK+AK + +  N  R+
Sbjct: 1   MSKLPQDLITEILSRVPVKPLIRFKCICKTWNSLISNPEFAKLQLKRAKENNNVSNHYRL 60

Query: 60  LLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPG-EKVPEDDAD--IIGSCNGLVCIDFDS 116
           LL T P QS+DYEA+   D   SN   +L Y    K P D+ D  I+GSC+GLV +  + 
Sbjct: 61  LLATWPPQSLDYEAYCNDDI--SNALRKLSYHAIAKDPNDNYDVRILGSCDGLVYLYNEY 118

Query: 117 TN-MVLWNPSTRVSRELPRP-APFPEQVIRGFISTIGNGNVSRETKVQVFSLKNNSWKEI 174
            + M LWNP+    +ELP+P   F    + G    IG  NV+ +    +F+ +  +W++I
Sbjct: 119 HDSMFLWNPTIGDYKELPKPNGAFHGMYLYG----IG-YNVNNDDYEVLFASR--TWRQI 171

Query: 175 QYFHARIDIYGLGVLSNGKLHWL 197
           +        +   +  NG ++WL
Sbjct: 172 EDIDLAPKSHVASISWNGAIYWL 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433770|ref|XP_002268486.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Vitis vinifera]

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 28/215 (13%)

Query: 1   MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
           MA LP +I+ +IL RLPVKSLLRF+CV K W +LISDS+FA+   +Q ++      R  +
Sbjct: 1   MAILPDEIIENILLRLPVKSLLRFRCVCKAWRALISDSEFAEMHYQQPQTQA----RSRV 56

Query: 61  LTTSP---LQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDA-DIIGSCNGLVCIDFDS 116
           L + P   ++S+D +A     G+D++  V + YP E  P +    I+ SC+GL+C+    
Sbjct: 57  LISCPGRVIRSMDPDA----SGNDNSGVVNIDYPLE--PSNLVFQILDSCDGLLCVIDSF 110

Query: 117 TNMVLWNPSTRVSRELPRPAPFPEQ--VIRGF-----------ISTIGNGNVSRETKVQV 163
            N  LWNPSTR    LP+P+ F E   ++ GF           +  +       +T++ V
Sbjct: 111 HNPALWNPSTRQFNPLPKPS-FLENSDILYGFTYDYSSDDYKIVRVVSTSRDVIKTEIDV 169

Query: 164 FSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLG 198
           F LK N W+ ++  H     + +G   NG  +WL 
Sbjct: 170 FELKTNEWRRVEETHYSRPAWDVGTFLNGAFYWLA 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098774|ref|XP_002334536.1| predicted protein [Populus trichocarpa] gi|222873014|gb|EEF10145.1| predicted protein [Populus trichocarpa]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 105/178 (58%), Gaps = 18/178 (10%)

Query: 6   QDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLLTTSP 65
            D+  D++   PVK L+RFKCVSKP  S IS  +FAK  LK +K + + N  R+ L TSP
Sbjct: 1   MDLNIDLIEIPPVKCLVRFKCVSKPCHSRISSPEFAKIHLKHSKQENNVNHHRIPLFTSP 60

Query: 66  LQSIDYEAFGFGDGSDSNITVQLGY-PGEKVPEDDADIIGSCNGLVCIDFDSTN-MVLWN 123
              ID EA  + DG D+ +T QLG+ PG  + E + +I+GSC GLVC  FDS N +++WN
Sbjct: 61  FLFIDPEA--YTDGDDNLVTTQLGHIPGRNL-ESEFEIVGSCTGLVCAVFDSENHIIVWN 117

Query: 124 PSTRVSRELPRP-APF-----------PEQVIRGFISTIGNGNVSRETKVQVFSLKNN 169
            + R S+ELP P   F             +++RG IS   N +  R  KV+V +LK+N
Sbjct: 118 LAARDSKELPVPNGKFFFRCGYDLRLDDYKIVRGSISLTNNSSNYR-AKVEVLTLKSN 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.613	0.340	0.355	4.6e-16
TAIR|locus:2010316	416	AT1G12870 "AT1G12870" [Arabido	0.653	0.317	0.312	1.6e-14
TAIR|locus:2041115	334	AT2G02030 "AT2G02030" [Arabido	0.599	0.362	0.362	6.2e-14
TAIR|locus:2090567	388	AT3G17530 "AT3G17530" [Arabido	0.579	0.301	0.318	9.5e-14
TAIR|locus:2202099	312	AT1G11270 "AT1G11270" [Arabido	0.589	0.381	0.366	1.6e-13
TAIR|locus:2127465	402	AT4G22390 "AT4G22390" [Arabido	0.806	0.405	0.262	1.6e-13
TAIR|locus:2135615	413	CPR1 "AT4G12560" [Arabidopsis	0.846	0.414	0.311	2.4e-13
TAIR|locus:2024437	382	AT1G09650 "AT1G09650" [Arabido	0.633	0.335	0.347	5e-13
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.485	0.229	0.362	5.5e-13
TAIR|locus:2040829	391	AT2G34280 "AT2G34280" [Arabido	0.633	0.327	0.338	6.7e-12

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
 Identities = 48/135 (35%), Positives = 75/135 (55%)

Query:     4 LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQ---LKQAKSDCSGNIRRVL 60
             LP +++ +IL RLPVKSL RFKCV   W SLIS++ FA      L+ +K+  S      +
Sbjct:    14 LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGV 73

Query:    61 LTTSPLQSIDYEAFGFGDGSDSNITVQLG-YPGEKVPEDDADIIGSCNGLVC--IDFDST 117
             +TTS             + S    TV +  + GE +  D   ++G+C+GLVC  +D+D +
Sbjct:    74 ITTSRYHLKSCCIHSLYNAS----TVYVSEHDGELLGRDYYQVVGTCHGLVCFHVDYDKS 129

Query:   118 NMVLWNPSTRVSREL 132
              + LWNP+ ++ + L
Sbjct:   130 -LYLWNPTIKLQQRL 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
 Identities = 44/141 (31%), Positives = 74/141 (52%)

Query:     2 AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLL 61
             + LP D+V +I  +LPVK+L+RFK +SK W S +    F++  LK A+     + + +++
Sbjct:    31 SSLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSHVDHPKVMII 90

Query:    62 TT--SPLQSIDYEAFGFGDGSDSNITVQLGYP-GEKVPEDDADIIGSCNGLVCIDFDST- 117
             T   +P   I +        S  +  +   +P G   P   ++   SC+G+ CI    T 
Sbjct:    91 TEKWNPDIEISFRTISLESVSFLSSAL-FNFPRGFHHPIYASE---SCDGIFCIHSPKTQ 146

Query:   118 NMVLWNPSTRVSRELPRPAPF 138
             ++ + NP+TR  R+LP PA F
Sbjct:   147 DIYVVNPATRWFRQLP-PARF 166

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2041115 AT2G02030 "AT2G02030" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
 Identities = 50/138 (36%), Positives = 70/138 (50%)

Query:     4 LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSD-------CSGNI 56
             +P +IV +IL RLPVKSL RF+ VSK W +LI+   F K  +   KS        C   +
Sbjct:    39 IPNEIVEEILVRLPVKSLTRFQTVSKHWRTLITSKYFGKRHMALEKSKGCKLLFVCDDFV 98

Query:    57 RRVLLTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDS 116
              R   T   L+++  E     +G +     + GY G        DI  SC+GLVC  +D+
Sbjct:    99 DRAEDTLF-LKTVALEKTSVSEGDEQAFEFE-GYKGF------LDISESCDGLVCF-YDT 149

Query:   117 TNMV-LWNPSTRVSRELP 133
             T  V + NP+T +  ELP
Sbjct:   150 TRAVEVMNPATTMFIELP 167

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090567 AT3G17530 "AT3G17530" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
 Identities = 42/132 (31%), Positives = 68/132 (51%)

Query:     1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
             ++ LP D+ ++ILSR+P KSL ++K   K W++L  D  F K    +A     G    ++
Sbjct:     3 ISDLPHDLESEILSRVPAKSLAKWKTTCKRWYALFRDPSFVKKNFDKA-----GGREMIV 57

Query:    61 LTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDA---DI--IGSCNGLV-CIDF 114
             L  S + S      G  +  D ++ V     G+ +  +D+   DI  I  C+GL+ C   
Sbjct:    58 LMNSRVYSNSVNLQGINNRFDPSMEVT----GKLIKLNDSKGVDISAIFHCDGLILCTTT 113

Query:   115 DSTNMVLWNPST 126
             +ST +V+WNP T
Sbjct:   114 ESTGLVVWNPCT 125

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202099 AT1G11270 "AT1G11270" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 48/131 (36%), Positives = 66/131 (50%)

Query:     4 LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLLTT 63
             LP D+V  IL RLPV+SLLRFKCVS  W S I    F + QL + + +  G    VL+ +
Sbjct:    35 LPHDVVGLILERLPVESLLRFKCVSNQWKSTIESQCFQERQLIR-RMESRGP--DVLVVS 91

Query:    64 SPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCID-FDSTNMVLW 122
                 + D + +G      S+I     +P            GSC GL+CI    S N+V+ 
Sbjct:    92 F---ADDEDKYGRKAVFGSSIVSTFRFPTLHT----LICYGSCEGLICIYCVYSPNIVV- 143

Query:   123 NPSTRVSRELP 133
             NP+T+  R  P
Sbjct:   144 NPATKWHRSCP 154

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010286 "heat acclimation" evidence=IEP

TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 52/198 (26%), Positives = 99/198 (50%)

Query:     1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
             MA+ P D++ ++  RL   +L++ + +SKP FSLI   +F  + L++ + +   ++  +L
Sbjct:     1 MAECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRR-RLETGEHLMILL 59

Query:    61 LTTSPLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNMV 120
                  L++++ +       S  N++  + +P +       ++ GS NG++ +     ++ 
Sbjct:    60 RGPRLLRTVELD-------SPENVS-DIPHPLQA--GGFTEVFGSFNGVIGLCNSPVDLA 109

Query:   121 LWNPSTRVSRELP-RPAPFPEQ-VIRGFI------STIGNG-NVSR-------ETK---- 160
             ++NPSTR    LP  P  FPE+ + R ++       ++G+   V R       E K    
Sbjct:   110 IFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFP 169

Query:   161 ----VQVFSLKNNSWKEI 174
                 V+VFSLK NSWK +
Sbjct:   170 CPVEVKVFSLKKNSWKRV 187

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 65/209 (31%), Positives = 102/209 (48%)

Query:     1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
             MA +P DIV DI  RLP K+L+R + +SKP + LI+D  F ++ L +     +G+   +L
Sbjct:     1 MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQ--TGDHLMIL 58

Query:    61 LTTS-PLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCIDFDSTNM 119
             L  +  L S+D ++      SD    ++ G P E        + GS NGL+ +    T++
Sbjct:    59 LRGALRLYSVDLDSLD--SVSDVEHPMKRGGPTE--------VFGSSNGLIGLSNSPTDL 108

Query:   120 VLWNPSTRVSRELPRPA-PFPE-QVIRGFIST-IGNGNVSRETKV--------------- 161
              ++NPSTR    LP  +   P+    RG++   +G  +VS + KV               
Sbjct:   109 AVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELG 168

Query:   162 -------QVFSLKNNSWKEIQYFHARIDI 183
                    +VFSLK NSWK I+   + I +
Sbjct:   169 CSFPYEVKVFSLKKNSWKRIESVASSIQL 197

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0042177 "negative regulation of protein catabolic process" evidence=IMP

TAIR|locus:2024437 AT1G09650 "AT1G09650" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
 Identities = 48/138 (34%), Positives = 69/138 (50%)

Query:     1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
             M  LP ++V  IL RL    LLRFK VSK W S I    F + Q  Q +   SGN   ++
Sbjct:    10 MESLPHEVVECILERLDADPLLRFKAVSKQWKSTIESPFFQRRQFTQRQQ--SGNPDVLM 67

Query:    61 LTTSPLQSIDYEAFG-FGDGSDSNITVQLGYPGEKVPEDDADII---GSCNGLVCIDFDS 116
             ++     + + EA      GS S++ +    P E+  E+D +      SC+GLVC+ FD 
Sbjct:    68 VSRCADINSEIEALTTLVLGSSSSVKIPT--PWEEEEEEDKEYSVSQDSCDGLVCL-FDK 124

Query:   117 TNM-VLWNPSTRVSRELP 133
                  ++NP+TR    LP
Sbjct:   125 FKSGFVFNPATRWYHPLP 142

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
 Identities = 37/102 (36%), Positives = 59/102 (57%)

Query:     4 LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQA-KSDCSGNIRRVLLT 62
             LP +I+ +IL RLP KS+ RF+CVSK + +L SD  FAK  L    +++   ++ R L+ 
Sbjct:    36 LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query:    63 TSP-LQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADII 103
             +S  L S+D+ + G  DG      V+  YP +  P   +++I
Sbjct:    96 SSHNLYSLDFNSIG--DGIRDLAAVEHNYPLKDDPSIFSEMI 135

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2040829 AT2G34280 "AT2G34280" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
 Identities = 46/136 (33%), Positives = 69/136 (50%)

Query:     1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
             M  LP D+V  IL RL VKSLL  K VSK W S I    F + QL   +  C+ ++  V 
Sbjct:     1 MDLLPYDVVEHILERLDVKSLLNCKSVSKQWRSTIRCRAFQERQLMHRRQSCNPDVLLVS 60

Query:    61 LTTS--PLQSIDYEAFGFGDGSDSNITVQLGYPGEKVPEDDADIIGSCNGLVCI-DFDST 117
             +      L+ +         GS  +++V++  P E           SC+GL+C+ +  ++
Sbjct:    61 VADEFYLLKRVHQVMRTLVLGS--SVSVRILTPWEDTLYKVCQ--SSCDGLICLYNTYAS 116

Query:   118 NMVLWNPSTRVSRELP 133
             N+V+ NP+TR  RE P
Sbjct:   117 NIVV-NPTTRWHREFP 131

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_88000019 hypothetical protein (374 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	7e-12
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	4e-08
pfam00646	48	pfam00646, F-box, F-box domain	2e-06
pfam12937	47	pfam12937, F-box-like, F-box-like	4e-06

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 17/111 (15%)

Query: 103 IGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFISTIGNGNVSRETKV- 161
           +  C+GL+C       +V+WNPST  SR LP P              +G   + ++ KV 
Sbjct: 1   VVPCDGLICF-SYGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYF-LGYDPIEKQYKVL 58

Query: 162 --------------QVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLG 198
                         QV++L +NSW+ I+       +   GV  NG L++L 
Sbjct: 59  CFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLA 109

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 47.4 bits (114), Expect = 4e-08
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 4  LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQF 40
          LP +I+ +ILS+L  K LLR + VS+ W SLI    F
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 3  KLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQF 40
           LP D++ +ILSRL  K LLR   VSK W SL+   + 
Sbjct: 5  DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 42

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 42.1 bits (100), Expect = 4e-06
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 1  MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQF 40
          ++ LP +I+  I S L  + LLR   V + W  L SD   
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.8
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.2
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	99.12
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	99.02
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.61
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.58
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.39
PHA02713	557	hypothetical protein; Provisional	97.28
PHA02790	480	Kelch-like protein; Provisional	97.21
KOG2997	366	consensus F-box protein FBX9 [General function pre	97.18
PHA02713	557	hypothetical protein; Provisional	97.15
PHA02790	480	Kelch-like protein; Provisional	97.07
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.06
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	96.88
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	96.87
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	96.87
PHA03098	534	kelch-like protein; Provisional	96.68
PHA03098	534	kelch-like protein; Provisional	96.62
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	96.43
PLN02153	341	epithiospecifier protein	96.41
PLN02153	341	epithiospecifier protein	96.02
PF13964	50	Kelch_6: Kelch motif	95.65
PLN02193	470	nitrile-specifier protein	95.63
PLN02193	470	nitrile-specifier protein	95.08
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	94.42
PF13964	50	Kelch_6: Kelch motif	93.81
smart00612	47	Kelch Kelch domain.	93.8
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	93.06
KOG4341	483	consensus F-box protein containing LRR [General fu	92.73
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	92.64
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	92.52
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	89.12
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	88.97
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	88.65
smart00612	47	Kelch Kelch domain.	88.3
KOG4693	392	consensus Uncharacterized conserved protein, conta	87.38
PF13415	49	Kelch_3: Galactose oxidase, central domain	86.21
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	85.53
PF13415	49	Kelch_3: Galactose oxidase, central domain	83.66
KOG4693	392	consensus Uncharacterized conserved protein, conta	83.52

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.80  E-value=3.6e-19  Score=136.56  Aligned_cols=97  Identities=31%  Similarity=0.566  Sum_probs=71.4

Q ss_pred             eceeCceEEEEeCCCcEEEEcccccceeecCCCCCCC--CC-ceeEEEE--------EE--cC--CCCCCccEEEEEecC
Q 043223          103 IGSCNGLVCIDFDSTNMVLWNPSTRVSRELPRPAPFP--EQ-VIRGFIS--------TI--GN--GNVSRETKVQVFSLK  167 (202)
Q Consensus       103 ~~s~~Gll~~~~~~~~~~V~NP~T~~~~~lP~~~~~~--~~-~~~~~g~--------Vv--~~--~~~~~~~~~~vy~s~  167 (202)
                      +++||||||+.. ...++||||+||+++.||+++...  .. ..+||||        |+  ..  .. .....++||+++
T Consensus         1 ~~sCnGLlc~~~-~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~   78 (230)
T TIGR01640         1 VVPCDGLICFSY-GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLG   78 (230)
T ss_pred             CcccceEEEEec-CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeC
Confidence            479999999984 489999999999999998765421  11 1578998        33  11  11 245689999999


Q ss_pred             CCceeEccccCcccccCCcceEECCeEEEEeeec
Q 043223          168 NNSWKEIQYFHARIDIYGLGVLSNGKLHWLGILE  201 (202)
Q Consensus       168 t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~~  201 (202)
                      +++||.++..+........+|++||++||++.++
T Consensus        79 ~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~  112 (230)
T TIGR01640        79 SNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTL  112 (230)
T ss_pred             CCCccccccCCCCccccCCeEEECCEEEEEEEEC
Confidence            9999999743333222334999999999998753

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.20  E-value=1e-11  Score=71.17  Aligned_cols=40  Identities=30%  Similarity=0.645  Sum_probs=35.5

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHH
Q 043223            1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQF   40 (202)
Q Consensus         1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F   40 (202)
                      |+.||+|++.+||..||++++.++.+|||+|++++.++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l   40 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL   40 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence            5789999999999999999999999999999999988744

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=99.12  E-value=1.7e-11  Score=70.56  Aligned_cols=44  Identities=41%  Similarity=0.650  Sum_probs=37.2

Q ss_pred             CCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHHHHHHH
Q 043223            2 AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQL   45 (202)
Q Consensus         2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~~   45 (202)
                      .+||+|++.+||.+|+.+++.+++.|||+|++++.++.+...+.
T Consensus         4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            46999999999999999999999999999999999998866543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=99.02  E-value=1.4e-10  Score=64.31  Aligned_cols=39  Identities=49%  Similarity=0.813  Sum_probs=36.7

Q ss_pred             CcHHHHHHHHhcCChhhhHhhhccccccccccCChHHHH
Q 043223            4 LPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAK   42 (202)
Q Consensus         4 LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~   42 (202)
                      ||+|++.+||.+|+.+++.++++|||+|+.++.++.|.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999988753

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.08  E-value=1.6e-06  Score=70.28  Aligned_cols=36  Identities=31%  Similarity=0.571  Sum_probs=33.0

Q ss_pred             CCCcHHHHHHHHhcCC-hhhhHhhhccccccccccCC
Q 043223            2 AKLPQDIVADILSRLP-VKSLLRFKCVSKPWFSLISD   37 (202)
Q Consensus         2 ~~LP~Dll~eIL~rLP-~~~l~r~r~VcK~W~~li~~   37 (202)
                      ++||+||+..|..||| .-+++|||+|||+||+.+..
T Consensus         5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            4799999999999997 66999999999999998774

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=3e-05  Score=60.82  Aligned_cols=38  Identities=37%  Similarity=0.545  Sum_probs=35.0

Q ss_pred             CCCcHHHHHHHHhcCChhhhHhhhccccccccccCChH
Q 043223            2 AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQ   39 (202)
Q Consensus         2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~   39 (202)
                      .+||||++..||+.|+.|+|.++..|||+|..+-++..
T Consensus        99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~  136 (419)
T KOG2120|consen   99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES  136 (419)
T ss_pred             ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence            47999999999999999999999999999999877654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.58  E-value=0.001  Score=57.81  Aligned_cols=95  Identities=16%  Similarity=0.140  Sum_probs=64.9

Q ss_pred             eceeCceEEEEe-------CCCcEEEEcccccceeecCCCCCCCCCc-eeEEE-EEE--c--CCCCCCccEEEEEecCCC
Q 043223          103 IGSCNGLVCIDF-------DSTNMVLWNPSTRVSRELPRPAPFPEQV-IRGFI-STI--G--NGNVSRETKVQVFSLKNN  169 (202)
Q Consensus       103 ~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~g-~Vv--~--~~~~~~~~~~~vy~s~t~  169 (202)
                      ++..+|.|+...       .-..+-.+||.|++|..+|+....+... ...++ +|+  .  ++. .....+|.||..++
T Consensus       423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~-~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGT-SALSSVERYDPETN  501 (571)
T ss_pred             EEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCC-CccceEEEEcCCCC
Confidence            556788888773       1257899999999999999998876632 11111 142  2  222 34566999999999


Q ss_pred             ceeEccccCcccccCCcceEECCeEEEEee
Q 043223          170 SWKEIQYFHARIDIYGLGVLSNGKLHWLGI  199 (202)
Q Consensus       170 ~W~~~~~~~~~~~~~~~~v~~~G~lywl~~  199 (202)
                      +|+.+..++... .....+.++|.+|-+..
T Consensus       502 ~W~~v~~m~~~r-s~~g~~~~~~~ly~vGG  530 (571)
T KOG4441|consen  502 QWTMVAPMTSPR-SAVGVVVLGGKLYAVGG  530 (571)
T ss_pred             ceeEcccCcccc-ccccEEEECCEEEEEec
Confidence            999996555442 23344678888887654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.39  E-value=0.00077  Score=58.51  Aligned_cols=97  Identities=13%  Similarity=0.126  Sum_probs=68.5

Q ss_pred             EeceeCceEEEEe-------CCCcEEEEcccccceeecCCCCCCCCCc-e---eEEEEEE--cCCCCCCccEEEEEecCC
Q 043223          102 IIGSCNGLVCIDF-------DSTNMVLWNPSTRVSRELPRPAPFPEQV-I---RGFISTI--GNGNVSRETKVQVFSLKN  168 (202)
Q Consensus       102 ~~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~lP~~~~~~~~~-~---~~~g~Vv--~~~~~~~~~~~~vy~s~t  168 (202)
                      .++..+|.|...+       ..+.+..+||.|++|..+|++...+... .   .|.=|++  .++. .....+|.||..+
T Consensus       327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~  405 (571)
T KOG4441|consen  327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVT  405 (571)
T ss_pred             cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccc-cccccEEEecCCC
Confidence            3556667666653       2367899999999999999988776632 1   1111233  2344 5667899999999


Q ss_pred             CceeEccccCcccccCCcceEECCeEEEEeee
Q 043223          169 NSWKEIQYFHARIDIYGLGVLSNGKLHWLGIL  200 (202)
Q Consensus       169 ~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~  200 (202)
                      +.|..++.++. .......+.++|.+|=+...
T Consensus       406 ~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  406 NKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             CcccccCCCCc-ceeeeEEEEECCEEEEEcCc
Confidence            99999987777 34455567899999987643

>PHA02713 hypothetical protein; Provisional

Probab=97.28  E-value=0.0057  Score=53.08  Aligned_cols=95  Identities=13%  Similarity=0.156  Sum_probs=62.4

Q ss_pred             eceeCceEEEEeC-------CCcEEEEcccccceeecCCCCCCCCC-ceeEEE-EE--EcC--CCCCCccEEEEEecCCC
Q 043223          103 IGSCNGLVCIDFD-------STNMVLWNPSTRVSRELPRPAPFPEQ-VIRGFI-ST--IGN--GNVSRETKVQVFSLKNN  169 (202)
Q Consensus       103 ~~s~~Gll~~~~~-------~~~~~V~NP~T~~~~~lP~~~~~~~~-~~~~~g-~V--v~~--~~~~~~~~~~vy~s~t~  169 (202)
                      ++..+|.|.+.+.       ...+..+||.+++|..+|+.+..+.. ....++ .|  +..  +. .....+|+|+..++
T Consensus       299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~  377 (557)
T PHA02713        299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDD  377 (557)
T ss_pred             EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCC
Confidence            3445666655421       24588999999999999988765442 111111 13  322  12 33457999999999


Q ss_pred             ceeEccccCcccccCCcceEECCeEEEEee
Q 043223          170 SWKEIQYFHARIDIYGLGVLSNGKLHWLGI  199 (202)
Q Consensus       170 ~W~~~~~~~~~~~~~~~~v~~~G~lywl~~  199 (202)
                      +|+.++.+|.... ....+.++|.+|-+..
T Consensus       378 ~W~~~~~mp~~r~-~~~~~~~~g~IYviGG  406 (557)
T PHA02713        378 KWKMLPDMPIALS-SYGMCVLDQYIYIIGG  406 (557)
T ss_pred             eEEECCCCCcccc-cccEEEECCEEEEEeC
Confidence            9999987776543 3445678999998753

>PHA02790 Kelch-like protein; Provisional

Probab=97.21  E-value=0.0065  Score=51.78  Aligned_cols=91  Identities=13%  Similarity=0.023  Sum_probs=62.0

Q ss_pred             EeceeCceEEEEe----CCCcEEEEcccccceeecCCCCCCCCCc-eeEEEE-EE-cCCCCCCccEEEEEecCCCceeEc
Q 043223          102 IIGSCNGLVCIDF----DSTNMVLWNPSTRVSRELPRPAPFPEQV-IRGFIS-TI-GNGNVSRETKVQVFSLKNNSWKEI  174 (202)
Q Consensus       102 ~~~s~~Gll~~~~----~~~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~g~-Vv-~~~~~~~~~~~~vy~s~t~~W~~~  174 (202)
                      ..+.++|.|.+.+    ....+.++||.|.+|..+|+++..+... ...+|- |+ ..+      .+|+|+.++++|+.+
T Consensus       357 ~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------~~e~ydp~~~~W~~~  430 (480)
T PHA02790        357 AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------NAEFYCESSNTWTLI  430 (480)
T ss_pred             EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------ceEEecCCCCcEeEc
Confidence            4567888887763    1245778999999999998887654431 212221 32 222      278999999999999


Q ss_pred             cccCcccccCCcceEECCeEEEEee
Q 043223          175 QYFHARIDIYGLGVLSNGKLHWLGI  199 (202)
Q Consensus       175 ~~~~~~~~~~~~~v~~~G~lywl~~  199 (202)
                      +.++.. +.....+.++|.+|-+..
T Consensus       431 ~~m~~~-r~~~~~~v~~~~IYviGG  454 (480)
T PHA02790        431 DDPIYP-RDNPELIIVDNKLLLIGG  454 (480)
T ss_pred             CCCCCC-ccccEEEEECCEEEEECC
Confidence            877654 234456788999998754

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=97.18  E-value=0.00018  Score=56.52  Aligned_cols=45  Identities=16%  Similarity=0.387  Sum_probs=38.8

Q ss_pred             CCCCcHHHHHHHHhcC-----ChhhhHhhhccccccccccCChHHHHHHH
Q 043223            1 MAKLPQDIVADILSRL-----PVKSLLRFKCVSKPWFSLISDSQFAKTQL   45 (202)
Q Consensus         1 ~~~LP~Dll~eIL~rL-----P~~~l~r~r~VcK~W~~li~~p~F~~~~~   45 (202)
                      |+.||||++.+||.++     .+.+|.++.+|||.|+-...+|.|-+...
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC  156 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC  156 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence            4579999999999876     36999999999999999999998866543

>PHA02713 hypothetical protein; Provisional

Probab=97.15  E-value=0.0061  Score=52.90  Aligned_cols=83  Identities=11%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             CcEEEEcccccceeecCCCCCCCCCc-eeEEEE-E--EcCC--CCCCccEEEEEecCC-CceeEccccCcccccCCcceE
Q 043223          117 TNMVLWNPSTRVSRELPRPAPFPEQV-IRGFIS-T--IGNG--NVSRETKVQVFSLKN-NSWKEIQYFHARIDIYGLGVL  189 (202)
Q Consensus       117 ~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~g~-V--v~~~--~~~~~~~~~vy~s~t-~~W~~~~~~~~~~~~~~~~v~  189 (202)
                      ..+.++||.|.+|..+|+.+..+... ...++- |  +...  .......+|.|+.++ ++|+.+..+|.... ....+.
T Consensus       432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~  510 (557)
T PHA02713        432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTIL  510 (557)
T ss_pred             ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEE
Confidence            35889999999999998876654431 222221 3  3221  101224589999999 89999988877543 455678


Q ss_pred             ECCeEEEEeee
Q 043223          190 SNGKLHWLGIL  200 (202)
Q Consensus       190 ~~G~lywl~~~  200 (202)
                      ++|.+|-+...
T Consensus       511 ~~~~iyv~Gg~  521 (557)
T PHA02713        511 HDNTIMMLHCY  521 (557)
T ss_pred             ECCEEEEEeee
Confidence            89999988643

>PHA02790 Kelch-like protein; Provisional

Probab=97.07  E-value=0.01  Score=50.55  Aligned_cols=94  Identities=10%  Similarity=0.057  Sum_probs=61.9

Q ss_pred             eceeCceEEEEe---CCCcEEEEcccccceeecCCCCCCCCCc-eeEE-EEEE--cCCCCCCccEEEEEecCCCceeEcc
Q 043223          103 IGSCNGLVCIDF---DSTNMVLWNPSTRVSRELPRPAPFPEQV-IRGF-ISTI--GNGNVSRETKVQVFSLKNNSWKEIQ  175 (202)
Q Consensus       103 ~~s~~Gll~~~~---~~~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~-g~Vv--~~~~~~~~~~~~vy~s~t~~W~~~~  175 (202)
                      ..+.+|.|.+..   ....+..+||.+++|..+|+++..+... ...+ |.|+  .... .....+|.|+.++++|+.++
T Consensus       314 ~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~-~~~~~ve~ydp~~~~W~~~~  392 (480)
T PHA02790        314 GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHS-ETDTTTEYLLPNHDQWQFGP  392 (480)
T ss_pred             EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcC-CCCccEEEEeCCCCEEEeCC
Confidence            446778777663   2356788999999999999887655421 1111 1242  2221 23357899999999999987


Q ss_pred             ccCcccccCCcceEECCeEEEEe
Q 043223          176 YFHARIDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       176 ~~~~~~~~~~~~v~~~G~lywl~  198 (202)
                      .++.+.. ....+.++|.+|-+.
T Consensus       393 ~m~~~r~-~~~~~~~~~~IYv~G  414 (480)
T PHA02790        393 STYYPHY-KSCALVFGRRLFLVG  414 (480)
T ss_pred             CCCCccc-cceEEEECCEEEEEC
Confidence            7665532 344567899988763

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.06  E-value=0.00029  Score=56.11  Aligned_cols=43  Identities=35%  Similarity=0.466  Sum_probs=38.7

Q ss_pred             CCCc----HHHHHHHHhcCChhhhHhhhccccccccccCChHHHHHH
Q 043223            2 AKLP----QDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQ   44 (202)
Q Consensus         2 ~~LP----~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~   44 (202)
                      ..||    +++.+.||+.|...+|..+..|||+|+.+++++-.-++-
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL  122 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL  122 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence            4689    999999999999999999999999999999998765543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=96.88  E-value=0.036  Score=44.62  Aligned_cols=42  Identities=12%  Similarity=0.175  Sum_probs=32.6

Q ss_pred             cEEEEEecCCCceeEccccCcccccCCcceEECCeEEEEeee
Q 043223          159 TKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGIL  200 (202)
Q Consensus       159 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~~  200 (202)
                      ..+++||..+++|..++.+|...+.....+.++|.+|.+..+
T Consensus       271 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       271 RKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE  312 (323)
T ss_pred             ceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence            469999999999999986664434445568899999988643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=96.87  E-value=0.028  Score=45.67  Aligned_cols=40  Identities=15%  Similarity=0.114  Sum_probs=30.1

Q ss_pred             cEEEEEecCCCceeEccccCcccccCCcceEECCeEEEEe
Q 043223          159 TKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       159 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~  198 (202)
                      ..+++|+..+++|+.++.+|.........+.++|.+|-+.
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~G  207 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLIN  207 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEe
Confidence            5799999999999999877653333344457788988774

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=96.87  E-value=0.026  Score=46.54  Aligned_cols=41  Identities=17%  Similarity=0.112  Sum_probs=31.1

Q ss_pred             cEEEEEecCCCceeEccccCcccccCCcceEECCeEEEEee
Q 043223          159 TKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGI  199 (202)
Q Consensus       159 ~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~  199 (202)
                      ..+++||..+++|+.++.+|.........+.++|.+|.+..
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG  229 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLING  229 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEee
Confidence            57999999999999988776533333445677999998864

>PHA03098 kelch-like protein; Provisional

Probab=96.68  E-value=0.018  Score=49.72  Aligned_cols=82  Identities=16%  Similarity=0.131  Sum_probs=54.0

Q ss_pred             CcEEEEcccccceeecCCCCCCCCCc-eeEEE-EE--EcC-CCCCCccEEEEEecCCCceeEccccCcccccCCcceEEC
Q 043223          117 TNMVLWNPSTRVSRELPRPAPFPEQV-IRGFI-ST--IGN-GNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSN  191 (202)
Q Consensus       117 ~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~g-~V--v~~-~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~  191 (202)
                      ..++.+||.|++|..+|+.+..+... ...++ .|  +.. ........+++|+..+++|+..+.+|.+. .....+.++
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-~~~~~~~~~  389 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-YNPCVVNVN  389 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-ccceEEEEC
Confidence            47899999999999999877544321 11111 12  221 11134467999999999999988777543 234456788


Q ss_pred             CeEEEEee
Q 043223          192 GKLHWLGI  199 (202)
Q Consensus       192 G~lywl~~  199 (202)
                      |.+|-+..
T Consensus       390 ~~iYv~GG  397 (534)
T PHA03098        390 NLIYVIGG  397 (534)
T ss_pred             CEEEEECC
Confidence            88887653

>PHA03098 kelch-like protein; Provisional

Probab=96.62  E-value=0.035  Score=47.90  Aligned_cols=95  Identities=20%  Similarity=0.209  Sum_probs=59.8

Q ss_pred             eceeCceEEEEe------CCCcEEEEcccccceeecCCCCCCCCCce-eEEE-EE--EcC--CCCCCccEEEEEecCCCc
Q 043223          103 IGSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRPAPFPEQVI-RGFI-ST--IGN--GNVSRETKVQVFSLKNNS  170 (202)
Q Consensus       103 ~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~-~~~g-~V--v~~--~~~~~~~~~~vy~s~t~~  170 (202)
                      +.+.+|-|.+..      ....+.++||.|++|..+|+.+..+.... ...+ .|  +..  ........+++|+..+++
T Consensus       338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            344566665542      23568899999999999987765543211 1111 13  221  110234679999999999


Q ss_pred             eeEccccCcccccCCcceEECCeEEEEe
Q 043223          171 WKEIQYFHARIDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       171 W~~~~~~~~~~~~~~~~v~~~G~lywl~  198 (202)
                      |+.+..+|.... ....+..+|.+|-+.
T Consensus       418 W~~~~~~p~~r~-~~~~~~~~~~iyv~G  444 (534)
T PHA03098        418 WSKGSPLPISHY-GGCAIYHDGKIYVIG  444 (534)
T ss_pred             eeecCCCCcccc-CceEEEECCEEEEEC
Confidence            999887665532 344567788888664

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=96.43  E-value=0.092  Score=42.25  Aligned_cols=81  Identities=14%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             CcEEEEcccccce----eecCCCCCCCCCc-eeEEE-EE--EcC--CCCCCccEEEEEecCCCceeEccccCcccccCCc
Q 043223          117 TNMVLWNPSTRVS----RELPRPAPFPEQV-IRGFI-ST--IGN--GNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGL  186 (202)
Q Consensus       117 ~~~~V~NP~T~~~----~~lP~~~~~~~~~-~~~~g-~V--v~~--~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~  186 (202)
                      ..++.+|+.+++|    ..+|+.+..+... ...++ .|  +..  .. .....+++|+.++++|+.++.+|...+....
T Consensus        88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~  166 (323)
T TIGR03548        88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRVQPV  166 (323)
T ss_pred             eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCCcce
Confidence            5788899999987    6677766554321 11111 13  211  11 3346799999999999998766643333344


Q ss_pred             ceEECCeEEEEe
Q 043223          187 GVLSNGKLHWLG  198 (202)
Q Consensus       187 ~v~~~G~lywl~  198 (202)
                      .+.++|.+|-+.
T Consensus       167 ~~~~~~~iYv~G  178 (323)
T TIGR03548       167 CVKLQNELYVFG  178 (323)
T ss_pred             EEEECCEEEEEc
Confidence            467888888764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=96.41  E-value=0.077  Score=43.07  Aligned_cols=81  Identities=7%  Similarity=0.108  Sum_probs=48.6

Q ss_pred             CcEEEEcccccceeecCCCCC-CCCC--c--eeEEEE-E--Ec--CCCCCCccEEEEEecCCCceeEccccCc----ccc
Q 043223          117 TNMVLWNPSTRVSRELPRPAP-FPEQ--V--IRGFIS-T--IG--NGNVSRETKVQVFSLKNNSWKEIQYFHA----RID  182 (202)
Q Consensus       117 ~~~~V~NP~T~~~~~lP~~~~-~~~~--~--~~~~g~-V--v~--~~~~~~~~~~~vy~s~t~~W~~~~~~~~----~~~  182 (202)
                      ..++++||.+++|..+|+... .+..  .  ...++- |  +.  ... .....+++|+.++++|+.++.++.    ..+
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R  128 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEAR  128 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence            478999999999999876532 2111  0  111111 3  31  111 234579999999999998865521    112


Q ss_pred             cCCcceEECCeEEEEe
Q 043223          183 IYGLGVLSNGKLHWLG  198 (202)
Q Consensus       183 ~~~~~v~~~G~lywl~  198 (202)
                      .....+..+|.+|-+.
T Consensus       129 ~~~~~~~~~~~iyv~G  144 (341)
T PLN02153        129 TFHSMASDENHVYVFG  144 (341)
T ss_pred             eeeEEEEECCEEEEEC
Confidence            2344567788888653

>PLN02153 epithiospecifier protein

Probab=96.02  E-value=0.15  Score=41.36  Aligned_cols=95  Identities=7%  Similarity=0.038  Sum_probs=53.5

Q ss_pred             eceeCceEEEEe------CCCcEEEEcccccceeecCCC-----CCCCCCc-eeEE-E--EEEcC-CC------CCCccE
Q 043223          103 IGSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRP-----APFPEQV-IRGF-I--STIGN-GN------VSRETK  160 (202)
Q Consensus       103 ~~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~-----~~~~~~~-~~~~-g--~Vv~~-~~------~~~~~~  160 (202)
                      +.+.+|.|.+..      ....+.++||.|++|..+++.     +..+... .... +  ||+.. ..      ......
T Consensus        81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  160 (341)
T PLN02153         81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT  160 (341)
T ss_pred             EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence            345566665542      124789999999999999764     2222110 1111 1  12211 10      012246


Q ss_pred             EEEEecCCCceeEccccCccc--ccCCcceEECCeEEEE
Q 043223          161 VQVFSLKNNSWKEIQYFHARI--DIYGLGVLSNGKLHWL  197 (202)
Q Consensus       161 ~~vy~s~t~~W~~~~~~~~~~--~~~~~~v~~~G~lywl  197 (202)
                      +++|+.++++|+.++.+....  +.....+.++|.+|-+
T Consensus       161 v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~  199 (341)
T PLN02153        161 IEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVV  199 (341)
T ss_pred             EEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEE
Confidence            899999999999987543221  2223345678888765

>PF13964 Kelch_6: Kelch motif

Probab=95.65  E-value=0.022  Score=32.34  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=20.4

Q ss_pred             CCCcEEEEcccccceeecCCCCCC
Q 043223          115 DSTNMVLWNPSTRVSRELPRPAPF  138 (202)
Q Consensus       115 ~~~~~~V~NP~T~~~~~lP~~~~~  138 (202)
                      ....+.++||.|++|..+|+++..
T Consensus        26 ~~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen   26 YSNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             ccccEEEEcCCCCcEEECCCCCCC
Confidence            357899999999999999987643

>PLN02193 nitrile-specifier protein

Probab=95.63  E-value=0.32  Score=41.47  Aligned_cols=94  Identities=10%  Similarity=0.005  Sum_probs=54.6

Q ss_pred             ceeCceEEEEe------CCCcEEEEcccccceeecCCCC---CCCCCc-eeEEE---EEEc--CCCCCCccEEEEEecCC
Q 043223          104 GSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRPA---PFPEQV-IRGFI---STIG--NGNVSRETKVQVFSLKN  168 (202)
Q Consensus       104 ~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~~---~~~~~~-~~~~g---~Vv~--~~~~~~~~~~~vy~s~t  168 (202)
                      ...++.|.+..      ..+.++++||.|++|..+++..   ..+... ....+   ||+.  ... .....+++|+..+
T Consensus       225 v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t  303 (470)
T PLN02193        225 VSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVD  303 (470)
T ss_pred             EEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCC
Confidence            34566665542      2367899999999999997652   222211 11111   1231  122 3445789999999


Q ss_pred             CceeEccccCcc--cccCCcceEECCeEEEEe
Q 043223          169 NSWKEIQYFHAR--IDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       169 ~~W~~~~~~~~~--~~~~~~~v~~~G~lywl~  198 (202)
                      ++|+.+......  .+.....+.++|.+|-+.
T Consensus       304 ~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviG  335 (470)
T PLN02193        304 KKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVY  335 (470)
T ss_pred             CEEEeCCCCCCCCCCCCCcEEEEECCcEEEEE
Confidence            999987532111  122334456788888654

>PLN02193 nitrile-specifier protein

Probab=95.08  E-value=0.2  Score=42.62  Aligned_cols=81  Identities=14%  Similarity=0.198  Sum_probs=47.9

Q ss_pred             CcEEEEcccccceeecCCCCCCC----CCc-eeEEE---EEEc--CCCCCCccEEEEEecCCCceeEccccCcc--cccC
Q 043223          117 TNMVLWNPSTRVSRELPRPAPFP----EQV-IRGFI---STIG--NGNVSRETKVQVFSLKNNSWKEIQYFHAR--IDIY  184 (202)
Q Consensus       117 ~~~~V~NP~T~~~~~lP~~~~~~----~~~-~~~~g---~Vv~--~~~~~~~~~~~vy~s~t~~W~~~~~~~~~--~~~~  184 (202)
                      ..++++||.|.+|..+|......    ... ....+   ||+.  +.. .....+++|++.+++|+.+..+...  .+..
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~  271 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF  271 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccc
Confidence            45899999999999887542111    110 11111   1231  111 3345799999999999998655221  1223


Q ss_pred             CcceEECCeEEEEe
Q 043223          185 GLGVLSNGKLHWLG  198 (202)
Q Consensus       185 ~~~v~~~G~lywl~  198 (202)
                      ...+..++.+|-+.
T Consensus       272 h~~~~~~~~iYv~G  285 (470)
T PLN02193        272 HSMAADEENVYVFG  285 (470)
T ss_pred             eEEEEECCEEEEEC
Confidence            34456788888654

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=94.42  E-value=0.42  Score=38.80  Aligned_cols=82  Identities=20%  Similarity=0.216  Sum_probs=48.0

Q ss_pred             CcEEEEcccccceeecCCCCCC-CCC-ceeEEE-EE--Ec-C-CCCCCccEEEEEec--CCCceeEccccCccccc----
Q 043223          117 TNMVLWNPSTRVSRELPRPAPF-PEQ-VIRGFI-ST--IG-N-GNVSRETKVQVFSL--KNNSWKEIQYFHARIDI----  183 (202)
Q Consensus       117 ~~~~V~NP~T~~~~~lP~~~~~-~~~-~~~~~g-~V--v~-~-~~~~~~~~~~vy~s--~t~~W~~~~~~~~~~~~----  183 (202)
                      ..+.++||.|++|..+++.+.. +.. ....++ .|  +. . ........+++|+.  ++++|..+..++.....    
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~  247 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG  247 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence            5789999999999999876642 221 111222 12  31 1 11012234555654  67799999877654211    


Q ss_pred             --CCcceEECCeEEEEe
Q 043223          184 --YGLGVLSNGKLHWLG  198 (202)
Q Consensus       184 --~~~~v~~~G~lywl~  198 (202)
                        ....+.++|.+|-+.
T Consensus       248 ~~~~~a~~~~~~Iyv~G  264 (346)
T TIGR03547       248 LAGAFAGISNGVLLVAG  264 (346)
T ss_pred             ccEEeeeEECCEEEEee
Confidence              112467899998775

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF13964 Kelch_6: Kelch motif

Probab=93.81  E-value=0.076  Score=30.08  Aligned_cols=24  Identities=13%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             CCccEEEEEecCCCceeEccccCc
Q 043223          156 SRETKVQVFSLKNNSWKEIQYFHA  179 (202)
Q Consensus       156 ~~~~~~~vy~s~t~~W~~~~~~~~  179 (202)
                      .....+++|+.+|++|+.++.+|.
T Consensus        25 ~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen   25 KYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             CccccEEEEcCCCCcEEECCCCCC
Confidence            456789999999999999987764

>smart00612 Kelch Kelch domain

Probab=93.80  E-value=0.09  Score=28.84  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=23.8

Q ss_pred             CccEEEEEecCCCceeEccccCcccccCCcceEECC
Q 043223          157 RETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNG  192 (202)
Q Consensus       157 ~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G  192 (202)
                      ....+++|+.++++|+.++.++.... ....+.++|
T Consensus        13 ~~~~v~~yd~~~~~W~~~~~~~~~r~-~~~~~~~~g   47 (47)
T smart00612       13 RLKSVEVYDPETNKWTPLPSMPTPRS-GHGVAVING   47 (47)
T ss_pred             eeeeEEEECCCCCeEccCCCCCCccc-cceEEEeCC
Confidence            34679999999999999887665432 223344443

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=93.06  E-value=2.9  Score=34.49  Aligned_cols=95  Identities=18%  Similarity=0.104  Sum_probs=52.7

Q ss_pred             ceeCceEEEEe--CCCcEEEEccc--ccceeecCCCCC-CCCC-ceeEEE-EE--EcCCCC-------CCccEEEEEecC
Q 043223          104 GSCNGLVCIDF--DSTNMVLWNPS--TRVSRELPRPAP-FPEQ-VIRGFI-ST--IGNGNV-------SRETKVQVFSLK  167 (202)
Q Consensus       104 ~s~~Gll~~~~--~~~~~~V~NP~--T~~~~~lP~~~~-~~~~-~~~~~g-~V--v~~~~~-------~~~~~~~vy~s~  167 (202)
                      +..++-|.+..  ....++++++.  +++|..+|+.+. .+.. .....+ .|  +.....       .....+++|+..
T Consensus        35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~  114 (376)
T PRK14131         35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK  114 (376)
T ss_pred             EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC
Confidence            44566665542  33557788765  588999987653 2221 111111 13  221110       113579999999


Q ss_pred             CCceeEcccc-CcccccCCcceE-ECCeEEEEee
Q 043223          168 NNSWKEIQYF-HARIDIYGLGVL-SNGKLHWLGI  199 (202)
Q Consensus       168 t~~W~~~~~~-~~~~~~~~~~v~-~~G~lywl~~  199 (202)
                      +++|+.+... |... .....+. .+|.+|-+..
T Consensus       115 ~n~W~~~~~~~p~~~-~~~~~~~~~~~~IYv~GG  147 (376)
T PRK14131        115 TNSWQKLDTRSPVGL-AGHVAVSLHNGKAYITGG  147 (376)
T ss_pred             CCEEEeCCCCCCCcc-cceEEEEeeCCEEEEECC
Confidence            9999998642 2221 1223334 7999998753

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.73  E-value=0.058  Score=44.60  Aligned_cols=35  Identities=31%  Similarity=0.470  Sum_probs=32.3

Q ss_pred             CCcHHHHHHHHhcCChhhhHhhhccccccccccCC
Q 043223            3 KLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISD   37 (202)
Q Consensus         3 ~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~   37 (202)
                      .||.+++..||+-|..+++.|++.|||.|+.+..+
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD  108 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD  108 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence            59999999999999999999999999999977554

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=92.64  E-value=0.12  Score=28.59  Aligned_cols=23  Identities=22%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             CCccEEEEEecCCCceeEccccC
Q 043223          156 SRETKVQVFSLKNNSWKEIQYFH  178 (202)
Q Consensus       156 ~~~~~~~vy~s~t~~W~~~~~~~  178 (202)
                      .....+++|+..+++|+.++.||
T Consensus        25 ~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen   25 QPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             SBEEEEEEEETTTTEEEEEEEES
T ss_pred             ceeeeEEEEeCCCCEEEEcCCCC
Confidence            56678999999999999988765

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=92.52  E-value=0.042  Score=47.48  Aligned_cols=42  Identities=29%  Similarity=0.468  Sum_probs=37.7

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHHHH
Q 043223            1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAK   42 (202)
Q Consensus         1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~   42 (202)
                      +..||.++...||..|+.+++++++.||+.|+.++.+.....
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~  149 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW  149 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence            357999999999999999999999999999999998866554

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=89.12  E-value=7.6  Score=33.35  Aligned_cols=70  Identities=14%  Similarity=0.184  Sum_probs=43.4

Q ss_pred             CceEEEEeCC------CcEEEEcccccceeecCCCCCC---CC-CceeEEEE-E--E-cC-CCCCCccEEEEEecCCCce
Q 043223          107 NGLVCIDFDS------TNMVLWNPSTRVSRELPRPAPF---PE-QVIRGFIS-T--I-GN-GNVSRETKVQVFSLKNNSW  171 (202)
Q Consensus       107 ~Gll~~~~~~------~~~~V~NP~T~~~~~lP~~~~~---~~-~~~~~~g~-V--v-~~-~~~~~~~~~~vy~s~t~~W  171 (202)
                      +.|+++....      ..+..+|+.|++|..+.+....   +. ......|- |  + .. ........++||+.++.+|
T Consensus       123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W  202 (482)
T KOG0379|consen  123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTW  202 (482)
T ss_pred             CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccc
Confidence            5566665433      4899999999999998544331   11 11222221 2  2 11 1112567899999999999


Q ss_pred             eEccc
Q 043223          172 KEIQY  176 (202)
Q Consensus       172 ~~~~~  176 (202)
                      .++..
T Consensus       203 ~~~~~  207 (482)
T KOG0379|consen  203 SELDT  207 (482)
T ss_pred             eeccc
Confidence            99863

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=88.97  E-value=0.34  Score=27.10  Aligned_cols=21  Identities=14%  Similarity=0.256  Sum_probs=14.1

Q ss_pred             CCcEEEEcccccceeecCCCC
Q 043223          116 STNMVLWNPSTRVSRELPRPA  136 (202)
Q Consensus       116 ~~~~~V~NP~T~~~~~lP~~~  136 (202)
                      .+.++++|+.|++|.++|++|
T Consensus        28 ~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen   28 LNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             ---EEEEETTTTEEEE--SS-
T ss_pred             cCCEEEEECCCCEEEECCCCC
Confidence            457899999999999997665

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=88.65  E-value=0.46  Score=26.57  Aligned_cols=22  Identities=14%  Similarity=0.496  Sum_probs=14.3

Q ss_pred             CccEEEEEecCCCceeEccccC
Q 043223          157 RETKVQVFSLKNNSWKEIQYFH  178 (202)
Q Consensus       157 ~~~~~~vy~s~t~~W~~~~~~~  178 (202)
                      ....+++|+.++++|++++.+|
T Consensus        27 ~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen   27 PLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             E---EEEEETTTTEEEE--SS-
T ss_pred             ccCCEEEEECCCCEEEECCCCC
Confidence            4456899999999999997665

>smart00612 Kelch Kelch domain

Probab=88.30  E-value=0.82  Score=24.76  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=20.0

Q ss_pred             CCcEEEEcccccceeecCCCCCCCC
Q 043223          116 STNMVLWNPSTRVSRELPRPAPFPE  140 (202)
Q Consensus       116 ~~~~~V~NP~T~~~~~lP~~~~~~~  140 (202)
                      ...+.++||.|.+|..+|+.+..+.
T Consensus        14 ~~~v~~yd~~~~~W~~~~~~~~~r~   38 (47)
T smart00612       14 LKSVEVYDPETNKWTPLPSMPTPRS   38 (47)
T ss_pred             eeeEEEECCCCCeEccCCCCCCccc
Confidence            3568899999999999987765543

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=87.38  E-value=2.6  Score=33.10  Aligned_cols=82  Identities=18%  Similarity=0.261  Sum_probs=53.4

Q ss_pred             CCcEEEEcccccceeecCCCCCCCC--CceeEEEE---E--EcCCC---CCCccEEEEEecCCCceeEccc---cCcccc
Q 043223          116 STNMVLWNPSTRVSRELPRPAPFPE--QVIRGFIS---T--IGNGN---VSRETKVQVFSLKNNSWKEIQY---FHARID  182 (202)
Q Consensus       116 ~~~~~V~NP~T~~~~~lP~~~~~~~--~~~~~~g~---V--v~~~~---~~~~~~~~vy~s~t~~W~~~~~---~~~~~~  182 (202)
                      ..++.+.|-.|+.|..-|+.+....  .....|+|   +  +..+.   ........-|+.+|..|+.|..   -|.. +
T Consensus       215 c~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a-R  293 (392)
T KOG4693|consen  215 CDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA-R  293 (392)
T ss_pred             cceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCc-c
Confidence            5678999999999999887654422  12455666   3  22211   1334567788999999999852   2222 1


Q ss_pred             cCCcceEECCeEEEEe
Q 043223          183 IYGLGVLSNGKLHWLG  198 (202)
Q Consensus       183 ~~~~~v~~~G~lywl~  198 (202)
                      -++.++..+|.+|-..
T Consensus       294 RRqC~~v~g~kv~LFG  309 (392)
T KOG4693|consen  294 RRQCSVVSGGKVYLFG  309 (392)
T ss_pred             cceeEEEECCEEEEec
Confidence            1556788899988654

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=86.21  E-value=1.7  Score=24.28  Aligned_cols=25  Identities=8%  Similarity=0.097  Sum_probs=20.2

Q ss_pred             CCcEEEEcccccceeecCCCCCCCC
Q 043223          116 STNMVLWNPSTRVSRELPRPAPFPE  140 (202)
Q Consensus       116 ~~~~~V~NP~T~~~~~lP~~~~~~~  140 (202)
                      .+.++++||.|++|.+++..+..+.
T Consensus        18 ~nd~~~~~~~~~~W~~~~~~P~~R~   42 (49)
T PF13415_consen   18 LNDVWVFDLDTNTWTRIGDLPPPRS   42 (49)
T ss_pred             ecCEEEEECCCCEEEECCCCCCCcc
Confidence            4578999999999999976665544

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=85.53  E-value=1.1  Score=25.15  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=18.5

Q ss_pred             CCccEEEEEecCCCceeEcccc
Q 043223          156 SRETKVQVFSLKNNSWKEIQYF  177 (202)
Q Consensus       156 ~~~~~~~vy~s~t~~W~~~~~~  177 (202)
                      .....+++|+.++.+|+.+..+
T Consensus        27 ~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen   27 SSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             cccceeEEEECCCCEEeecCCC
Confidence            4557799999999999998654

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=83.66  E-value=1.2  Score=24.99  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             CCccEEEEEecCCCceeEccccCcc
Q 043223          156 SRETKVQVFSLKNNSWKEIQYFHAR  180 (202)
Q Consensus       156 ~~~~~~~vy~s~t~~W~~~~~~~~~  180 (202)
                      .....+.+|+..+++|++++.+|..
T Consensus        16 ~~~nd~~~~~~~~~~W~~~~~~P~~   40 (49)
T PF13415_consen   16 TRLNDVWVFDLDTNTWTRIGDLPPP   40 (49)
T ss_pred             CEecCEEEEECCCCEEEECCCCCCC
Confidence            4456789999999999999766654

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=83.52  E-value=2.5  Score=33.25  Aligned_cols=83  Identities=12%  Similarity=0.155  Sum_probs=50.6

Q ss_pred             CCcEEEEcccccceeec------CCCCCCCCCceeEEEE---EE---cCCCCCCccEEEEEecCCCceeEccc--cCccc
Q 043223          116 STNMVLWNPSTRVSREL------PRPAPFPEQVIRGFIS---TI---GNGNVSRETKVQVFSLKNNSWKEIQY--FHARI  181 (202)
Q Consensus       116 ~~~~~V~NP~T~~~~~l------P~~~~~~~~~~~~~g~---Vv---~~~~~~~~~~~~vy~s~t~~W~~~~~--~~~~~  181 (202)
                      .+-++-++|-|.+|...      |.......  .+-.|-   |+   .+....-...+++++..|-+||.+..  .|...
T Consensus       104 CN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHs--AcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw  181 (392)
T KOG4693|consen  104 CNLLYEFDPETNVWKKPEVEGFVPGARDGHS--ACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW  181 (392)
T ss_pred             cceeeeeccccccccccceeeecCCccCCce--eeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh
Confidence            34578889999999874      33222211  232332   32   11110223468899999999999863  34444


Q ss_pred             ccCCcceEECCeEEEEeee
Q 043223          182 DIYGLGVLSNGKLHWLGIL  200 (202)
Q Consensus       182 ~~~~~~v~~~G~lywl~~~  200 (202)
                      +.+..++..+|.+|-...+
T Consensus       182 RDFH~a~~~~~~MYiFGGR  200 (392)
T KOG4693|consen  182 RDFHTASVIDGMMYIFGGR  200 (392)
T ss_pred             hhhhhhhhccceEEEeccc
Confidence            5567777888999877543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	1e-04
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	2e-04

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 1   MAKLPQDIVADILSRLPVKSLLRF-KCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRR 58
           +A+LP+ ++  +L+ LP   L++  + V   W  L+  +     + +Q      G+   
Sbjct: 51  LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADE 109

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 3  KLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVL 60
           LP +++  I S L +  LL+   V K W+ L SD    +T     K+       R+L
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL 68

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 1  MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQ 39
          + +LP D+   ILS L    L +    +  W   + D  
Sbjct: 5  LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPI 43

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 3  KLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQF 40
           LP +++  I S L +  LL+   V K W+ L SD   
Sbjct: 11 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.34
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.33
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.36
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.25
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.15
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.05
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.01
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.42
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.41
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.35
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.33
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.32
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.31
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.3
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.27
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.23
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.17
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.13
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.97
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.91
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.72
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.83
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.43
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.1
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.48

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.34  E-value=4.6e-13  Score=104.30  Aligned_cols=48  Identities=23%  Similarity=0.471  Sum_probs=45.5

Q ss_pred             CCCCcHHHHHHHHhcCChhhhH-hhhccccccccccCChHHHHHHHhhc
Q 043223            1 MAKLPQDIVADILSRLPVKSLL-RFKCVSKPWFSLISDSQFAKTQLKQA   48 (202)
Q Consensus         1 ~~~LP~Dll~eIL~rLP~~~l~-r~r~VcK~W~~li~~p~F~~~~~~~~   48 (202)
                      |+.||+||+.+||+|||+++|+ ||++|||+|+++++++.|.+.++.+.
T Consensus        51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            5689999999999999999999 99999999999999999999998775

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.33  E-value=5.4e-13  Score=77.72  Aligned_cols=41  Identities=32%  Similarity=0.558  Sum_probs=38.4

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHHH
Q 043223            1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFA   41 (202)
Q Consensus         1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~   41 (202)
                      ++.||+|++.+||++||.+++.++++|||+|+.++.++.|-
T Consensus         9 ~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW   49 (53)
T 1fs1_A            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   49 (53)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             HHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Confidence            46899999999999999999999999999999999998764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.36  E-value=1e-07  Score=73.81  Aligned_cols=48  Identities=23%  Similarity=0.301  Sum_probs=44.2

Q ss_pred             CCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHHHHHHHhhcc
Q 043223            2 AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAK   49 (202)
Q Consensus         2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~   49 (202)
                      +.||+|++..||+.|++++|+++.+|||+||.+.+++..-+.++.+..
T Consensus         6 ~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~   53 (312)
T 3l2o_B            6 TRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL   53 (312)
T ss_dssp             HHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred             HhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence            469999999999999999999999999999999999998888777654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.25  E-value=2.6e-07  Score=75.77  Aligned_cols=43  Identities=23%  Similarity=0.394  Sum_probs=37.9

Q ss_pred             CCCcHHHHHHHHhcCChhhhHhhhccccccccccCC-hHHHHHH
Q 043223            2 AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISD-SQFAKTQ   44 (202)
Q Consensus         2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~-p~F~~~~   44 (202)
                      +.||+|++.+||+.||+++|+++..|||.|+.++.+ +..-+..
T Consensus        16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~   59 (464)
T 3v7d_B           16 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   59 (464)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHH
T ss_pred             HHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            469999999999999999999999999999999998 6554433

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.15  E-value=1.1e-06  Score=71.72  Aligned_cols=46  Identities=26%  Similarity=0.382  Sum_probs=41.5

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHHHHHHHh
Q 043223            1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLK   46 (202)
Q Consensus         1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~~~   46 (202)
                      ++.||+|++.+||+.|++++|.++.+|||+|+.++.++.+-+....
T Consensus        19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            4679999999999999999999999999999999999887775553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.05  E-value=1.3e-06  Score=69.05  Aligned_cols=39  Identities=33%  Similarity=0.600  Sum_probs=35.8

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHhhhccccccccccCChH
Q 043223            1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQ   39 (202)
Q Consensus         1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~   39 (202)
                      ++.||+|++.+||.+|+.+++.+++.|||+|+.++.+|.
T Consensus         9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~   47 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES   47 (336)
T ss_dssp             SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred             hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence            468999999999999999999999999999999987654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.01  E-value=6.4e-07  Score=73.13  Aligned_cols=45  Identities=36%  Similarity=0.527  Sum_probs=39.2

Q ss_pred             CCCcHH----HHHHHHhcCChhhhHhhhccccccccccCChHHHHHHHh
Q 043223            2 AKLPQD----IVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLK   46 (202)
Q Consensus         2 ~~LP~D----ll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~~~   46 (202)
                      +.||+|    |+.+||+.|++++|.++.+|||+|+.++.++.+-+....
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~   60 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIE   60 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHH
T ss_pred             HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            459999    999999999999999999999999999988776554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.75  E-value=8.5e-06  Score=69.09  Aligned_cols=34  Identities=18%  Similarity=0.469  Sum_probs=29.4

Q ss_pred             CCCCcHHHHHHHHhcCC-hhhhHhhhccccccccc
Q 043223            1 MAKLPQDIVADILSRLP-VKSLLRFKCVSKPWFSL   34 (202)
Q Consensus         1 ~~~LP~Dll~eIL~rLP-~~~l~r~r~VcK~W~~l   34 (202)
                      ++.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            36799999999999999 99999999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.42  E-value=4.1e-05  Score=64.91  Aligned_cols=33  Identities=15%  Similarity=0.387  Sum_probs=31.1

Q ss_pred             CCCcHHHHHHHHhcC-ChhhhHhhhccccccccc
Q 043223            2 AKLPQDIVADILSRL-PVKSLLRFKCVSKPWFSL   34 (202)
Q Consensus         2 ~~LP~Dll~eIL~rL-P~~~l~r~r~VcK~W~~l   34 (202)
                      +.||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            369999999999999 899999999999999876

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.41  E-value=0.0029  Score=48.81  Aligned_cols=93  Identities=14%  Similarity=0.114  Sum_probs=60.9

Q ss_pred             ceeCceEEEEe------CCCcEEEEcccccceeecCCCCCCCCCceeE-EE-E--EE--cCCCCCCccEEEEEecCCCce
Q 043223          104 GSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRG-FI-S--TI--GNGNVSRETKVQVFSLKNNSW  171 (202)
Q Consensus       104 ~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~-~g-~--Vv--~~~~~~~~~~~~vy~s~t~~W  171 (202)
                      ...+|.|++..      ....+.++||.|++|..+|+.+..+...... ++ .  |+  .+.. .....+++|+..+++|
T Consensus        58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W  136 (302)
T 2xn4_A           58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEW  136 (302)
T ss_dssp             EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEE
T ss_pred             EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeE
Confidence            34466666552      2467999999999999998776654321111 11 1  22  1222 3446799999999999


Q ss_pred             eEccccCcccccCCcceEECCeEEEEe
Q 043223          172 KEIQYFHARIDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~G~lywl~  198 (202)
                      +.++.+|... .....+.++|.+|-+.
T Consensus       137 ~~~~~~p~~r-~~~~~~~~~~~iyv~G  162 (302)
T 2xn4_A          137 FHVAPMNTRR-SSVGVGVVGGLLYAVG  162 (302)
T ss_dssp             EEECCCSSCC-BSCEEEEETTEEEEEC
T ss_pred             eecCCCCCcc-cCceEEEECCEEEEEe
Confidence            9998776542 2445567889888764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.35  E-value=0.0032  Score=48.59  Aligned_cols=93  Identities=16%  Similarity=0.075  Sum_probs=61.8

Q ss_pred             ceeCceEEEEe-----CCCcEEEEcccccceeecCCCCCCCCCc-eeEEE-EE--Ec--C-CCCCCccEEEEEecCCCce
Q 043223          104 GSCNGLVCIDF-----DSTNMVLWNPSTRVSRELPRPAPFPEQV-IRGFI-ST--IG--N-GNVSRETKVQVFSLKNNSW  171 (202)
Q Consensus       104 ~s~~Gll~~~~-----~~~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~g-~V--v~--~-~~~~~~~~~~vy~s~t~~W  171 (202)
                      ...+|.|++..     ....+.++||.|++|..+|+.+..+... ...++ .|  +.  + .. .....+++|+..+++|
T Consensus        52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGN-SALYLFECYDTRTESW  130 (306)
T ss_dssp             EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTB-SCCCCEEEEETTTTEE
T ss_pred             EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCC-cEeeeEEEEeCCCCce
Confidence            34566666552     2478999999999999998766554321 11111 12  21  1 22 4456799999999999


Q ss_pred             eEccccCcccccCCcceEECCeEEEEe
Q 043223          172 KEIQYFHARIDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       172 ~~~~~~~~~~~~~~~~v~~~G~lywl~  198 (202)
                      +.++.+|... .....+.++|.+|-+.
T Consensus       131 ~~~~~~p~~r-~~~~~~~~~~~iyv~G  156 (306)
T 3ii7_A          131 HTKPSMLTQR-CSHGMVEANGLIYVCG  156 (306)
T ss_dssp             EEECCCSSCC-BSCEEEEETTEEEEEC
T ss_pred             EeCCCCcCCc-ceeEEEEECCEEEEEC
Confidence            9998776553 3445677899998775

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.33  E-value=0.0049  Score=47.40  Aligned_cols=93  Identities=11%  Similarity=0.042  Sum_probs=60.7

Q ss_pred             ceeCceEEEEe------CCCcEEEEcccccc---eeecCCCCCCCCCcee-EE-EEE--Ec--CCCCCCccEEEEEecCC
Q 043223          104 GSCNGLVCIDF------DSTNMVLWNPSTRV---SRELPRPAPFPEQVIR-GF-IST--IG--NGNVSRETKVQVFSLKN  168 (202)
Q Consensus       104 ~s~~Gll~~~~------~~~~~~V~NP~T~~---~~~lP~~~~~~~~~~~-~~-g~V--v~--~~~~~~~~~~~vy~s~t  168 (202)
                      ...+|.|++..      ....++++||.|++   |..+++.+..+..... .+ +.|  +.  ... .....+++|+..+
T Consensus        59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~  137 (301)
T 2vpj_A           59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNI  137 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTT
T ss_pred             EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCC-cccceEEEEcCCC
Confidence            34566665542      24679999999999   9999877665442111 11 112  21  122 3356899999999


Q ss_pred             CceeEccccCcccccCCcceEECCeEEEEe
Q 043223          169 NSWKEIQYFHARIDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       169 ~~W~~~~~~~~~~~~~~~~v~~~G~lywl~  198 (202)
                      ++|+.++.+|... .....+.++|.+|-+.
T Consensus       138 ~~W~~~~~~p~~r-~~~~~~~~~~~iyv~G  166 (301)
T 2vpj_A          138 DQWSMLGDMQTAR-EGAGLVVASGVIYCLG  166 (301)
T ss_dssp             TEEEEEEECSSCC-BSCEEEEETTEEEEEC
T ss_pred             CeEEECCCCCCCc-ccceEEEECCEEEEEC
Confidence            9999997766442 2445667899998774

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.32  E-value=0.0029  Score=49.05  Aligned_cols=80  Identities=15%  Similarity=0.128  Sum_probs=53.7

Q ss_pred             CcEEEEcccccceeecCCCCCCCCCce-eEEE-EE--Ec--CCCCCCccEEEEEecCCCceeEccccCcccccCCcceEE
Q 043223          117 TNMVLWNPSTRVSRELPRPAPFPEQVI-RGFI-ST--IG--NGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLS  190 (202)
Q Consensus       117 ~~~~V~NP~T~~~~~lP~~~~~~~~~~-~~~g-~V--v~--~~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~  190 (202)
                      ..++++||.|++|..+|+.+..+.... ..++ .|  +.  ... .....+++|+..+++|+.+..+|... .....+.+
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~  167 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRR-IGVGVAVL  167 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCC-BSCEEEEE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCccc-cceEEEEE
Confidence            579999999999999987766543211 1111 12  21  111 23457999999999999998766543 24455677


Q ss_pred             CCeEEEEe
Q 043223          191 NGKLHWLG  198 (202)
Q Consensus       191 ~G~lywl~  198 (202)
                      +|.+|-+.
T Consensus       168 ~~~iyv~G  175 (308)
T 1zgk_A          168 NRLLYAVG  175 (308)
T ss_dssp             TTEEEEEC
T ss_pred             CCEEEEEe
Confidence            99888764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.31  E-value=0.0056  Score=47.55  Aligned_cols=94  Identities=12%  Similarity=0.050  Sum_probs=62.4

Q ss_pred             eceeCceEEEEe---------CCCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec---CCCCCCccEEEEEe
Q 043223          103 IGSCNGLVCIDF---------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG---NGNVSRETKVQVFS  165 (202)
Q Consensus       103 ~~s~~Gll~~~~---------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~---~~~~~~~~~~~vy~  165 (202)
                      ....+|.|.+..         ....+.++||.|++|..+++.+..+... ...-+   |  +.   ... .....+++|+
T Consensus        94 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~-~~~~~~~~yd  171 (315)
T 4asc_A           94 LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLSHMDLVYVIGGKGSDR-KCLNKMCVYD  171 (315)
T ss_dssp             EEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCTTS-CBCCCEEEEE
T ss_pred             EEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEEECCEEEEEeCCCCCC-cccceEEEEe
Confidence            344566666552         1357999999999999998776554321 11112   2  31   222 4456899999


Q ss_pred             cCCCceeEccccCcccccCCcceEECCeEEEEee
Q 043223          166 LKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGI  199 (202)
Q Consensus       166 s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~  199 (202)
                      ..+++|+.+..+|... .....+.++|.+|-+..
T Consensus       172 ~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG  204 (315)
T 4asc_A          172 PKKFEWKELAPMQTAR-SLFGATVHDGRIIVAAG  204 (315)
T ss_dssp             TTTTEEEECCCCSSCC-BSCEEEEETTEEEEEEE
T ss_pred             CCCCeEEECCCCCCch-hceEEEEECCEEEEEec
Confidence            9999999998766542 24456678999987753

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.30  E-value=0.0049  Score=47.84  Aligned_cols=94  Identities=17%  Similarity=0.134  Sum_probs=61.8

Q ss_pred             eceeCceEEEEe-------CCCcEEEEcccccceeecCCCCCCCCCceeEEEE-----EE--cCCCCCCccEEEEEecCC
Q 043223          103 IGSCNGLVCIDF-------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS-----TI--GNGNVSRETKVQVFSLKN  168 (202)
Q Consensus       103 ~~s~~Gll~~~~-------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~-----Vv--~~~~~~~~~~~~vy~s~t  168 (202)
                      ....+|-|.+..       ....+.++||.|++|..+++.+..+... ...-+     |+  .... .....+++|+..+
T Consensus       144 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~  221 (315)
T 4asc_A          144 VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF-GATVHDGRIIVAAGVTDT-GLTSSAEVYSITD  221 (315)
T ss_dssp             EEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEEEEECSS-SEEEEEEEEETTT
T ss_pred             EEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhce-EEEEECCEEEEEeccCCC-CccceEEEEECCC
Confidence            334666666553       1467999999999999998776554321 11111     22  1222 3456799999999


Q ss_pred             CceeEccccCcccccCCcceEECCeEEEEee
Q 043223          169 NSWKEIQYFHARIDIYGLGVLSNGKLHWLGI  199 (202)
Q Consensus       169 ~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~  199 (202)
                      ++|+.++.+|... .....+.++|.+|-+..
T Consensus       222 ~~W~~~~~~p~~r-~~~~~~~~~~~l~v~GG  251 (315)
T 4asc_A          222 NKWAPFEAFPQER-SSLSLVSLVGTLYAIGG  251 (315)
T ss_dssp             TEEEEECCCSSCC-BSCEEEEETTEEEEEEE
T ss_pred             CeEEECCCCCCcc-cceeEEEECCEEEEECC
Confidence            9999998766553 24455678998887753

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.27  E-value=0.0045  Score=47.78  Aligned_cols=93  Identities=17%  Similarity=0.140  Sum_probs=61.4

Q ss_pred             ceeCceEEEEe------C----CCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec--CCCCCCccEEEEEec
Q 043223          104 GSCNGLVCIDF------D----STNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG--NGNVSRETKVQVFSL  166 (202)
Q Consensus       104 ~s~~Gll~~~~------~----~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~--~~~~~~~~~~~vy~s  166 (202)
                      ...+|-|.+..      .    ...+.++||.|++|..+++.+..+.. ....-+   |  +.  +.. .....+++|+.
T Consensus       146 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~  223 (306)
T 3ii7_A          146 VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLVFVKDKIFAVGGQNGL-GGLDNVEYYDI  223 (306)
T ss_dssp             EEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEETT-EEBCCEEEEET
T ss_pred             EEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-ceEEEECCEEEEEeCCCCC-CCCceEEEeeC
Confidence            44577776653      1    56799999999999999876655432 111111   2  21  111 23467999999


Q ss_pred             CCCceeEccccCcccccCCcceEECCeEEEEee
Q 043223          167 KNNSWKEIQYFHARIDIYGLGVLSNGKLHWLGI  199 (202)
Q Consensus       167 ~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~  199 (202)
                      .+++|+.+..+|... .....+.++|.+|-+..
T Consensus       224 ~~~~W~~~~~~p~~r-~~~~~~~~~~~i~v~GG  255 (306)
T 3ii7_A          224 KLNEWKMVSPMPWKG-VTVKCAAVGSIVYVLAG  255 (306)
T ss_dssp             TTTEEEECCCCSCCB-SCCEEEEETTEEEEEEC
T ss_pred             CCCcEEECCCCCCCc-cceeEEEECCEEEEEeC
Confidence            999999998776543 24455677898887753

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.23  E-value=0.0077  Score=46.27  Aligned_cols=92  Identities=13%  Similarity=0.204  Sum_probs=60.8

Q ss_pred             ceeCceEEEEe------CCCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec--CCCCCCccEEEEEecCCCc
Q 043223          104 GSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG--NGNVSRETKVQVFSLKNNS  170 (202)
Q Consensus       104 ~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~--~~~~~~~~~~~vy~s~t~~  170 (202)
                      ...+|-|.+..      ....+.++||.|++|..+++.+..+.. ....-+   |  +.  +.. .....+++|+.++++
T Consensus       156 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          156 VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG-AGVALLNDHIYVVGGFDGT-AHLSSVEAYNIRTDS  233 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBCSS-SBCCCEEEEETTTTE
T ss_pred             EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc-ceEEEECCEEEEEeCCCCC-cccceEEEEeCCCCc
Confidence            34566666652      246799999999999999876655432 111111   2  31  121 335679999999999


Q ss_pred             eeEccccCcccccCCcceEECCeEEEEe
Q 043223          171 WKEIQYFHARIDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       171 W~~~~~~~~~~~~~~~~v~~~G~lywl~  198 (202)
                      |+.+..+|... .....+.++|.+|-+.
T Consensus       234 W~~~~~~p~~r-~~~~~~~~~~~i~v~G  260 (301)
T 2vpj_A          234 WTTVTSMTTPR-CYVGATVLRGRLYAIA  260 (301)
T ss_dssp             EEEECCCSSCC-BSCEEEEETTEEEEEC
T ss_pred             EEECCCCCCcc-cceeEEEECCEEEEEc
Confidence            99998766553 2444567788888765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.21  E-value=0.0078  Score=46.59  Aligned_cols=92  Identities=12%  Similarity=0.108  Sum_probs=61.1

Q ss_pred             ceeCceEEEEe------CCCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec--CCCCCCccEEEEEecCCCc
Q 043223          104 GSCNGLVCIDF------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG--NGNVSRETKVQVFSLKNNS  170 (202)
Q Consensus       104 ~s~~Gll~~~~------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~--~~~~~~~~~~~vy~s~t~~  170 (202)
                      ...+|-|.+..      ....+.++||.|++|..+++.+..+... ...-+   |  +.  +.. .....+++|+..+++
T Consensus       118 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~  195 (308)
T 1zgk_A          118 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVLNRLLYAVGGFDGT-NRLNSAECYYPERNE  195 (308)
T ss_dssp             EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCSS-CBCCCEEEEETTTTE
T ss_pred             EEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEECCEEEEEeCCCCC-CcCceEEEEeCCCCe
Confidence            34567666652      2467999999999999998766554321 11111   2  31  222 335679999999999


Q ss_pred             eeEccccCcccccCCcceEECCeEEEEe
Q 043223          171 WKEIQYFHARIDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       171 W~~~~~~~~~~~~~~~~v~~~G~lywl~  198 (202)
                      |+.+..+|... .....+.++|.+|-+.
T Consensus       196 W~~~~~~p~~r-~~~~~~~~~~~iyv~G  222 (308)
T 1zgk_A          196 WRMITAMNTIR-SGAGVCVLHNCIYAAG  222 (308)
T ss_dssp             EEECCCCSSCC-BSCEEEEETTEEEEEC
T ss_pred             EeeCCCCCCcc-ccceEEEECCEEEEEe
Confidence            99998766543 2445567799888775

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.17  E-value=0.0048  Score=48.00  Aligned_cols=91  Identities=21%  Similarity=0.218  Sum_probs=59.9

Q ss_pred             eeCceEEEEe-------CCCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec--CCCCCCccEEEEEecCCCc
Q 043223          105 SCNGLVCIDF-------DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG--NGNVSRETKVQVFSLKNNS  170 (202)
Q Consensus       105 s~~Gll~~~~-------~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~--~~~~~~~~~~~vy~s~t~~  170 (202)
                      ..+|.|.+..       ....+.++||.|++|..+++.+..+.... ..-+   |  +.  ... .....+++|+..+++
T Consensus       156 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          156 SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFG-VAIHKGKIVIAGGVTED-GLSASVEAFDLKTNK  233 (318)
T ss_dssp             EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEEEEEETT-EEEEEEEEEETTTCC
T ss_pred             EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccce-EEEECCEEEEEcCcCCC-CccceEEEEECCCCe
Confidence            3677666552       24579999999999999987665543211 1111   2  21  111 234679999999999


Q ss_pred             eeEccccCcccccCCcceEECCeEEEEe
Q 043223          171 WKEIQYFHARIDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       171 W~~~~~~~~~~~~~~~~v~~~G~lywl~  198 (202)
                      |+.+..+|... .....+.++|.+|-+.
T Consensus       234 W~~~~~~p~~r-~~~~~~~~~~~i~v~G  260 (318)
T 2woz_A          234 WEVMTEFPQER-SSISLVSLAGSLYAIG  260 (318)
T ss_dssp             EEECCCCSSCC-BSCEEEEETTEEEEEC
T ss_pred             EEECCCCCCcc-cceEEEEECCEEEEEC
Confidence            99998776643 2445567888888764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.13  E-value=0.012  Score=45.32  Aligned_cols=93  Identities=16%  Similarity=0.189  Sum_probs=60.9

Q ss_pred             eceeCceEEEEe----C----CCcEEEEcccccceeecCCCCCCCCCceeEEEE---E--Ec--CCCCCCccEEEEEecC
Q 043223          103 IGSCNGLVCIDF----D----STNMVLWNPSTRVSRELPRPAPFPEQVIRGFIS---T--IG--NGNVSRETKVQVFSLK  167 (202)
Q Consensus       103 ~~s~~Gll~~~~----~----~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~---V--v~--~~~~~~~~~~~vy~s~  167 (202)
                      ....+|-|.+..    .    ...+.++||.|++|..+++.+..+... ...-+   |  +.  +.. .....+++|+..
T Consensus       151 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~  228 (302)
T 2xn4_A          151 VGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVLNNLLYAVGGHDGP-LVRKSVEVYDPT  228 (302)
T ss_dssp             EEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEECCBSSS-SBCCCEEEEETT
T ss_pred             EEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEEECCEEEEECCCCCC-cccceEEEEeCC
Confidence            344677766652    1    457999999999999998766554321 11111   2  32  221 234679999999


Q ss_pred             CCceeEccccCcccccCCcceEECCeEEEEe
Q 043223          168 NNSWKEIQYFHARIDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       168 t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~  198 (202)
                      +++|+.+..+|... .....+.++|.+|-+.
T Consensus       229 ~~~W~~~~~~~~~r-~~~~~~~~~~~i~v~G  258 (302)
T 2xn4_A          229 TNAWRQVADMNMCR-RNAGVCAVNGLLYVVG  258 (302)
T ss_dssp             TTEEEEECCCSSCC-BSCEEEEETTEEEEEC
T ss_pred             CCCEeeCCCCCCcc-ccCeEEEECCEEEEEC
Confidence            99999998766543 2344567788888775

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.97  E-value=0.007  Score=47.75  Aligned_cols=81  Identities=15%  Similarity=0.013  Sum_probs=53.1

Q ss_pred             CcEEEEcccccceeecCCCC-CCCCCceeEEEE---E--EcCCCC-----------------------------------
Q 043223          117 TNMVLWNPSTRVSRELPRPA-PFPEQVIRGFIS---T--IGNGNV-----------------------------------  155 (202)
Q Consensus       117 ~~~~V~NP~T~~~~~lP~~~-~~~~~~~~~~g~---V--v~~~~~-----------------------------------  155 (202)
                      ..+.++||.|++|..+++.+ ..+.. ....-+   |  +.....                                   
T Consensus        86 ~~v~~yd~~~~~W~~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (357)
T 2uvk_A           86 NDVHKYNPKTNSWVKLMSHAPMGMAG-HVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDY  164 (357)
T ss_dssp             CCEEEEETTTTEEEECSCCCSSCCSS-EEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGG
T ss_pred             ccEEEEeCCCCcEEECCCCCCccccc-ceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccccc
Confidence            57999999999999998766 33332 111112   2  211110                                   


Q ss_pred             CCccEEEEEecCCCceeEccccCcccccCCcceEECCeEEEEe
Q 043223          156 SRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSNGKLHWLG  198 (202)
Q Consensus       156 ~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~G~lywl~  198 (202)
                      .....+++|+..+++|+.+..+|.........+.++|.+|-+.
T Consensus       165 ~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~G  207 (357)
T 2uvk_A          165 FFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLIN  207 (357)
T ss_dssp             CCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEEC
T ss_pred             CCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEe
Confidence            0236899999999999999877754333355667888888764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.91  E-value=0.0054  Score=47.70  Aligned_cols=78  Identities=12%  Similarity=0.100  Sum_probs=53.1

Q ss_pred             EEEEcccccceeecCCCCCCCCCcee-EEE-E--EE--cC--CCCCCccEEEEEecCCCceeEccccCcccccCCcceEE
Q 043223          119 MVLWNPSTRVSRELPRPAPFPEQVIR-GFI-S--TI--GN--GNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLS  190 (202)
Q Consensus       119 ~~V~NP~T~~~~~lP~~~~~~~~~~~-~~g-~--Vv--~~--~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~  190 (202)
                      ++++||.|++|..+|+.+..+..... .++ .  |+  ..  .. .....+++|+..+++|+.++.+|... .....+.+
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~  157 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTE-ASLDSVLCYDPVAAKWSEVKNLPIKV-YGHNVISH  157 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTC-CEEEEEEEEETTTTEEEEECCCSSCE-ESCEEEEE
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCC-cccceEEEEeCCCCCEeECCCCCCcc-cccEEEEE
Confidence            88999999999999877665442111 111 1  22  11  22 34567999999999999998776553 24456678


Q ss_pred             CCeEEEEe
Q 043223          191 NGKLHWLG  198 (202)
Q Consensus       191 ~G~lywl~  198 (202)
                      +|.+|-+.
T Consensus       158 ~~~iyv~G  165 (318)
T 2woz_A          158 NGMIYCLG  165 (318)
T ss_dssp             TTEEEEEC
T ss_pred             CCEEEEEc
Confidence            99998775

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.72  E-value=0.019  Score=45.21  Aligned_cols=96  Identities=17%  Similarity=0.050  Sum_probs=60.2

Q ss_pred             ceeCceEEEEe--CCCcEEEEccc--ccceeecCCCC-CCCCCc-eeEEE-EE--EcCC------CCCCccEEEEEecCC
Q 043223          104 GSCNGLVCIDF--DSTNMVLWNPS--TRVSRELPRPA-PFPEQV-IRGFI-ST--IGNG------NVSRETKVQVFSLKN  168 (202)
Q Consensus       104 ~s~~Gll~~~~--~~~~~~V~NP~--T~~~~~lP~~~-~~~~~~-~~~~g-~V--v~~~------~~~~~~~~~vy~s~t  168 (202)
                      ...+|.|.+..  ....++++||.  +++|..+|+.+ ..+... ...++ .|  +...      .......+++|+..+
T Consensus        16 ~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           16 AIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             EEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             EEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            34477776653  45689999998  59999998776 443321 11111 12  2111      002346799999999


Q ss_pred             CceeEccccCcccccCCcceEECCeEEEEee
Q 043223          169 NSWKEIQYFHARIDIYGLGVLSNGKLHWLGI  199 (202)
Q Consensus       169 ~~W~~~~~~~~~~~~~~~~v~~~G~lywl~~  199 (202)
                      ++|+.+..++...+.....+..+|.+|-+..
T Consensus        96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG  126 (357)
T 2uvk_A           96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGG  126 (357)
T ss_dssp             TEEEECSCCCSSCCSSEEEEEETTEEEEEEC
T ss_pred             CcEEECCCCCCcccccceEEEECCEEEEEeC
Confidence            9999998766222223445678999998753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.83  E-value=0.042  Score=47.79  Aligned_cols=92  Identities=11%  Similarity=0.048  Sum_probs=56.8

Q ss_pred             eCceEEEEe-----CCCcEEEEcccccceeecC-C-----CCCCCC-CceeEE---E--EEEc--CCCCCCccEEEEEec
Q 043223          106 CNGLVCIDF-----DSTNMVLWNPSTRVSRELP-R-----PAPFPE-QVIRGF---I--STIG--NGNVSRETKVQVFSL  166 (202)
Q Consensus       106 ~~Gll~~~~-----~~~~~~V~NP~T~~~~~lP-~-----~~~~~~-~~~~~~---g--~Vv~--~~~~~~~~~~~vy~s  166 (202)
                      .+|.|++..     ....++++||.|++|..++ +     .+..+. .....+   |  ||+.  .........+++|+.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            455555542     2457999999999999998 4     222222 112223   1  2332  111023467999999


Q ss_pred             CCCceeEccccCcccccCCcceEE-CCeEEEEe
Q 043223          167 KNNSWKEIQYFHARIDIYGLGVLS-NGKLHWLG  198 (202)
Q Consensus       167 ~t~~W~~~~~~~~~~~~~~~~v~~-~G~lywl~  198 (202)
                      .+++|+.++.+|... .....+.+ +|.+|-+.
T Consensus       476 ~t~~W~~~~~~p~~R-~~h~~~~~~~~~iyv~G  507 (695)
T 2zwa_A          476 KTREWSMIKSLSHTR-FRHSACSLPDGNVLILG  507 (695)
T ss_dssp             TTTEEEECCCCSBCC-BSCEEEECTTSCEEEEC
T ss_pred             CCCcEEECCCCCCCc-ccceEEEEcCCEEEEEC
Confidence            999999998777543 23444554 88888764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.43  E-value=0.022  Score=49.01  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=50.3

Q ss_pred             cEEEEcccccceeecCCCCCCCCCceeEEEE-----EE-cCCCCCCccEEEEEecCCCceeEccccCcccccCCcceEE-
Q 043223          118 NMVLWNPSTRVSRELPRPAPFPEQVIRGFIS-----TI-GNGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLS-  190 (202)
Q Consensus       118 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~-----Vv-~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~-  190 (202)
                      .+.++||.|++|..++..+..+.....+..+     |+ ..+.  ....+++|+..+++|+.+..++... .....+.+ 
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~--~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~  296 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN--DAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMS  296 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS--STTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECT
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCC--CCCceEEecCcCCceeECCCCCccc-cccceEEec
Confidence            5899999999999997654433221222211     32 1121  1236999999999999997766542 23344566 


Q ss_pred             CCeEEEEee
Q 043223          191 NGKLHWLGI  199 (202)
Q Consensus       191 ~G~lywl~~  199 (202)
                      +|.+|-+..
T Consensus       297 dg~iyv~GG  305 (656)
T 1k3i_A          297 DGRVFTIGG  305 (656)
T ss_dssp             TSCEEEECC
T ss_pred             CCeEEEEeC
Confidence            899887754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.10  E-value=0.13  Score=44.25  Aligned_cols=70  Identities=20%  Similarity=0.254  Sum_probs=47.1

Q ss_pred             eeCceEEEEe--CCCcEEEEcccccceeecCCCCCCCCCce-eEE--EE--EEcC---CCCCCccEEEEEecCCCceeEc
Q 043223          105 SCNGLVCIDF--DSTNMVLWNPSTRVSRELPRPAPFPEQVI-RGF--IS--TIGN---GNVSRETKVQVFSLKNNSWKEI  174 (202)
Q Consensus       105 s~~Gll~~~~--~~~~~~V~NP~T~~~~~lP~~~~~~~~~~-~~~--g~--Vv~~---~~~~~~~~~~vy~s~t~~W~~~  174 (202)
                      ..+|.|++..  ....+.++||.|++|..+++++..+.... ..+  |.  |+..   .. .....+|+|+..+++|+.+
T Consensus       251 ~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~-~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          251 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG-VFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSS-SCCCCEEEEETTTTEEEEE
T ss_pred             CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCC-cccccceEeCCCCCcceeC
Confidence            4577777663  34589999999999999987766544311 112  12  2321   11 3446799999999999997


Q ss_pred             c
Q 043223          175 Q  175 (202)
Q Consensus       175 ~  175 (202)
                      .
T Consensus       330 ~  330 (656)
T 1k3i_A          330 P  330 (656)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.48  E-value=0.54  Score=40.83  Aligned_cols=93  Identities=15%  Similarity=0.069  Sum_probs=56.5

Q ss_pred             eCceEEEEe---CCCcEEEEcccccceeecCC---CCCCCCCc-eeEEE------EEEcCC--C-CCCccEEEEEecCCC
Q 043223          106 CNGLVCIDF---DSTNMVLWNPSTRVSRELPR---PAPFPEQV-IRGFI------STIGNG--N-VSRETKVQVFSLKNN  169 (202)
Q Consensus       106 ~~Gll~~~~---~~~~~~V~NP~T~~~~~lP~---~~~~~~~~-~~~~g------~Vv~~~--~-~~~~~~~~vy~s~t~  169 (202)
                      ++|.|.+..   ....+.++||.|++|..+++   .+..+... ...++      ||+...  . ......+++|+..++
T Consensus       499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            377666653   12279999999999999986   23222221 12222      233211  1 033467999999999


Q ss_pred             c------eeEccccCcccccCCcceEEC-CeEEEEe
Q 043223          170 S------WKEIQYFHARIDIYGLGVLSN-GKLHWLG  198 (202)
Q Consensus       170 ~------W~~~~~~~~~~~~~~~~v~~~-G~lywl~  198 (202)
                      +      |+.+..+|...+.....+.++ |.+|-+.
T Consensus       579 ~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~G  614 (695)
T 2zwa_A          579 NATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVG  614 (695)
T ss_dssp             CSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEEC
T ss_pred             ccccceEEEEcCCCCCCCcccceEEEeCCCEEEEEC
Confidence            9      888765443323344556677 8888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-09
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-07
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	8e-06
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	3e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (118), Expect = 2e-09
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 3  KLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQF 40
           LP +++  I S L +  LL+   V K W+ L SD   
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 15/70 (21%), Positives = 30/70 (42%)

Query: 2  AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQAKSDCSGNIRRVLL 61
          + LP+++   +LS L  K LL+     + W  L  D+   + + K+   D   +I+R  +
Sbjct: 20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKV 79

Query: 62 TTSPLQSIDY 71
                   +
Sbjct: 80 IKPGFIHSPW 89

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 8e-06
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 2  AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQF 40
          A+    I  +ILS L  KSL   + V K W+ + SD   
Sbjct: 16 ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 54

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 2  AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQ 39
            LP +I   I + L  + ++    VS+ W  +I  S 
Sbjct: 7  TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.01
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.89
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.61
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.31
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.62
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.37
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.34

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.5e-14  Score=77.25  Aligned_cols=39  Identities=33%  Similarity=0.625  Sum_probs=36.8

Q ss_pred             CCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHH
Q 043223            2 AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQF   40 (202)
Q Consensus         2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F   40 (202)
                      +.||+|++.+||++||+++|+|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999998764

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=9e-11  Score=76.06  Aligned_cols=47  Identities=26%  Similarity=0.386  Sum_probs=42.7

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHhhhccccccccccCChHHHHHHHhh
Q 043223            1 MAKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQ   47 (202)
Q Consensus         1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~~~~   47 (202)
                      ++.||+||+.+||+.||+++|+++.+|||+|+.++.++.+-+....+
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r   65 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE   65 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTT
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            46799999999999999999999999999999999999987766544

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=1.9e-10  Score=74.24  Aligned_cols=40  Identities=23%  Similarity=0.409  Sum_probs=35.9

Q ss_pred             CCCcHHHHHHHHhcCChhhhHhhhccccccccccC-ChHHH
Q 043223            2 AKLPQDIVADILSRLPVKSLLRFKCVSKPWFSLIS-DSQFA   41 (202)
Q Consensus         2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~-~p~F~   41 (202)
                      +.||+||+.+||+.|++++|++++.|||+|+.+++ ++..-
T Consensus         7 ~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LW   47 (100)
T d1nexb1           7 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW   47 (100)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHH
T ss_pred             hhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence            46999999999999999999999999999999985 56643

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4.4e-09  Score=69.69  Aligned_cols=42  Identities=33%  Similarity=0.497  Sum_probs=37.6

Q ss_pred             HHHHHHHHhcCChhhhHhhhccccccccccCChHHHHHHHhh
Q 043223            6 QDIVADILSRLPVKSLLRFKCVSKPWFSLISDSQFAKTQLKQ   47 (202)
Q Consensus         6 ~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~~~~   47 (202)
                      |||+..||+.|++++|+++.+|||.|+.+++++.+-+....+
T Consensus        20 ~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          20 DHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            699999999999999999999999999999998887655443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.0005  Score=50.56  Aligned_cols=81  Identities=14%  Similarity=0.103  Sum_probs=54.4

Q ss_pred             CCcEEEEcccccceeecCCCCCCCCCc-eeEEE-EE--Ec------CCCCCCccEEEEEecCCCceeEccccCcccccCC
Q 043223          116 STNMVLWNPSTRVSRELPRPAPFPEQV-IRGFI-ST--IG------NGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYG  185 (202)
Q Consensus       116 ~~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~g-~V--v~------~~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~  185 (202)
                      -..+.++||.|++|..+|+.+..+... ...++ .|  +.      +.. .....+++|+..+++|+.+..+|... ...
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~-~~~~~~~~yd~~~~~w~~~~~~p~~r-~~~   95 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN-TDSSALDCYNPMTNQWSPCAPMSVPR-NRI   95 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEE-EECCCEEEEETTTTEEEECCCCSSCC-BTC
T ss_pred             CceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCc-cccchhhhccccccccccccccccee-cce
Confidence            456889999999999998776654321 11111 12  21      111 33457999999999999998776542 344


Q ss_pred             cceEECCeEEEEe
Q 043223          186 LGVLSNGKLHWLG  198 (202)
Q Consensus       186 ~~v~~~G~lywl~  198 (202)
                      ..+..+|.+|.+.
T Consensus        96 ~~~~~~~~i~~~g  108 (288)
T d1zgka1          96 GVGVIDGHIYAVG  108 (288)
T ss_dssp             EEEEETTEEEEEC
T ss_pred             eccccceeeEEec
Confidence            5667899999764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.62  E-value=0.0023  Score=48.92  Aligned_cols=79  Identities=15%  Similarity=0.294  Sum_probs=48.5

Q ss_pred             cEEEEcccccceeecCCCCCCCCCceeEEEE-----EE-cCCCCCCccEEEEEecCCCceeEccccCcccccCCcceEEC
Q 043223          118 NMVLWNPSTRVSRELPRPAPFPEQVIRGFIS-----TI-GNGNVSRETKVQVFSLKNNSWKEIQYFHARIDIYGLGVLSN  191 (202)
Q Consensus       118 ~~~V~NP~T~~~~~lP~~~~~~~~~~~~~g~-----Vv-~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~~~~~~~~v~~~  191 (202)
                      ...+|||.|++|..+|...........+...     |+ ..+  .....+++|+..+++|+....++.........+..|
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg--~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d  130 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGG--NDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD  130 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECS--SSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeec--CCCcceeEecCccCcccccccccccccccceeeecC
Confidence            3679999999999987654433221222222     22 111  223568999999999999887776532222233347


Q ss_pred             CeEEEEe
Q 043223          192 GKLHWLG  198 (202)
Q Consensus       192 G~lywl~  198 (202)
                      |.+|-+.
T Consensus       131 G~v~v~G  137 (387)
T d1k3ia3         131 GRVFTIG  137 (387)
T ss_dssp             SCEEEEC
T ss_pred             Cceeeec
Confidence            7777654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.37  E-value=0.031  Score=42.25  Aligned_cols=74  Identities=16%  Similarity=0.165  Sum_probs=49.0

Q ss_pred             eeCceEEEEe--CCCcEEEEcccccceeecCCCCCCCCCceeEE---EEE--EcC--CCCCCccEEEEEecCCCceeEcc
Q 043223          105 SCNGLVCIDF--DSTNMVLWNPSTRVSRELPRPAPFPEQVIRGF---IST--IGN--GNVSRETKVQVFSLKNNSWKEIQ  175 (202)
Q Consensus       105 s~~Gll~~~~--~~~~~~V~NP~T~~~~~lP~~~~~~~~~~~~~---g~V--v~~--~~~~~~~~~~vy~s~t~~W~~~~  175 (202)
                      ..+|.+++..  ......++||.|++|..+|..+..+.......   |.|  +..  ........+++|+..+++|+.+.
T Consensus        84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3          84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             ecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecC
Confidence            4577777663  45788999999999999998876654311111   112  211  11134467999999999999876


Q ss_pred             ccC
Q 043223          176 YFH  178 (202)
Q Consensus       176 ~~~  178 (202)
                      .+.
T Consensus       164 ~~~  166 (387)
T d1k3ia3         164 NAK  166 (387)
T ss_dssp             TSC
T ss_pred             CCc
Confidence            443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.21  Score=35.73  Aligned_cols=65  Identities=9%  Similarity=0.122  Sum_probs=44.0

Q ss_pred             CCcEEEEcccccceeecCCCCCCCCCc-eeEE-EE--EE--cCCCCCCccEEEEEecCCCceeEccccCccc
Q 043223          116 STNMVLWNPSTRVSRELPRPAPFPEQV-IRGF-IS--TI--GNGNVSRETKVQVFSLKNNSWKEIQYFHARI  181 (202)
Q Consensus       116 ~~~~~V~NP~T~~~~~lP~~~~~~~~~-~~~~-g~--Vv--~~~~~~~~~~~~vy~s~t~~W~~~~~~~~~~  181 (202)
                      .....++|+.+++|..+++.+..+... ...+ |.  |+  .+.. .....+++|+..+++|+.+..+|...
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~R  280 (288)
T d1zgka1         210 LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH-TFLDSVECYDPDTDTWSEVTRMTSGR  280 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEECSSCC
T ss_pred             ccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCC-eecceEEEEECCCCEEEECCCCCCCc
Confidence            457799999999999997666554321 1111 11  23  1222 44567899999999999998777663