Citrus Sinensis ID: 043225

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---

MLLAWNSVELPLHNGVLPPFLYGKGIHNQWVISEALSCQQRFVFDASWTISSLFFNDPENLSNQSGKESQLSGAERRSWESVGNSRLGSLYGSSFFLEVNYSGLANLVKCDRQYLFVNTTENIVYPVTYERLSFWKGQIFHSWRLKKLMACVGGLKLLHRRLDCCLADQLKALPPLDFPFSLESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAMEKVVEHAATSGLSEQPSFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRNLFPNGAYLGLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQVLSGLWEYDAGTRMCMQRWDRTKLTKPTRIF

cEEEEEcccccccccccccccccccccHHHHHHHHHHcccEEEEEcccHHHHcccccccccccccccccccccccccccccccccccEEEccccccccccccccccEEEccccEEEccccccccccccccccccccccEEccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEccccccccccccEEEEEEEcccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccEEEEccccccccccccccccccHHHHHcccccEEEEEEcccccHHHHHHHHHHccccEEEcccccccccccccccccccccc

cEEEEcccccccccccccccccccccccHHHHHHHHHcccEEEEEcHHHHHHEEcccHHcccccccccccccccccccHEEEcHHHHHHHHccccccccccccccEEEEcccEEEEEccccccEEccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccccEEEEEEEcHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEEcccccHccccccccEEEEcccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccEEcccccEEEEEEEcHHccccccccEEEEccEEHHHcccccEEEEcccccccHHHHHHHHHcccEEEccccccccccccccccccccccc

mllawnsvelplhngvlppflygkgihnQWVISEALSCqqrfvfdaswtisslffndpenlsnqsgkesqlsgaerrswesvgnsrlgslygssFFLEVNYSGLanlvkcdrqylfvnttenivypvtyerlsfwkgqifhSWRLKKLMACVGGLKLLHRRLDCCLAdqlkalppldfpfsLESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILqglpvfndpsapsnisfndchfgtKCFQRVTKAKSRMVLQILKLGYnvllsdvdvywfknplpslytygpfvlaaqsdeykatgainlprrlnsgfyfarsdssTIAAMEKVVEHAAtsglseqpsfydtlcgaggsnrkgddrciepetnltvhfldrnlfpngaylglwqkknvrrdcakkgclvlhnnwisGRLKKLERQVLSGLweydagtrmcmqrwdrtkltkptrif

MLLAWNSVELPLHNGVLPPFLYGKGIHNQWVISEALSCQQRFVFDASWTISSLFFNDPENLSNQSGKESQLSGAERRSWESVGNSRLGSLYGSSFFLEVNYSGLANLVKCDRQYLFVNTTENIVYPVTYERLSFWKGQIFHSWRLKKLMACVGGLKLLHRRLDCCLADQLKALPPLDFPFSLESLLSviadknktVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGainlprrlnSGFYFARSDSSTIAAMEKVVEHAatsglseqpsFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRNLFPNGAYLGLWQKKNVRRDCAKKGCLVlhnnwisgrlkkLERQVLSGLWEydagtrmcmqrwdrtkltkptrif

**LAWNSVELPLHNGVLPPFLYGKGIHNQWVISEALSCQQRFVFDASWTISSLFFN*****************************RLGSLYGSSFFLEVNYSGLANLVKCDRQYLFVNTTENIVYPVTYERLSFWKGQIFHSWRLKKLMACVGGLKLLHRRLDCCLADQLKALPPLDFPFSLESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAMEKVV*************FYDTLCGAG*******DRCIEPETNLTVHFLDRNLFPNGAYLGLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQVLSGLWEYDAGTRMCMQRWDR**********

MLLA***VELPLHNGVLPPFLYGKGIHNQWVISEALSCQQRFVFDASWTISSLFFNDPEN******************WESVGNSRLGSLYGSSFFLEVNYSGLANLVKCDRQ******************************************************************FSLESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAMEKVVEHAATSGLSEQPSFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRNLFPNGAYLGLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQVLSGLWEYDAGTRM**********TK**RIF

MLLAWNSVELPLHNGVLPPFLYGKGIHNQWVISEALSCQQRFVFDASWTISSLFFNDPEN*********************VGNSRLGSLYGSSFFLEVNYSGLANLVKCDRQYLFVNTTENIVYPVTYERLSFWKGQIFHSWRLKKLMACVGGLKLLHRRLDCCLADQLKALPPLDFPFSLESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAMEKVVEHAATSGLSEQPSFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRNLFPNGAYLGLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQVLSGLWEYDAGTRMCMQRWDRTKLTKPTRIF

MLLAWNSVELPLHNGVLPPFLYGKGIHNQWVISEALSCQQRFVFDASWTISSLFFNDPENLS******SQLS*AERRSWESVGNSRLGSLYGSSFFLEVNYSGLANLVKCDRQYLFVNTTENIVYPVTYERLSFWKGQIFHSWRLKKLMACVGGLKL***RLDCCL***LKALPPLDFPFSLESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAMEKVVEHAATSGLSEQPSFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRNLFPNGAYLGLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQVLSGLWEYDAGTRMCMQRWDRT*******IF

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		473	2.2.26 [Sep-21-2011]
Q54RP0		648	UDP-galactose:fucoside al	yes	no	0.530	0.387	0.233	2e-11
Q3E6Y3		329	Uncharacterized protein A	no	no	0.238	0.343	0.275	1e-06

>sp\|Q54RP0\|AGTA_DICDI UDP-galactose:fucoside alpha-3-galactosyltransferase OS=Dictyostelium discoideum GN=agtA PE=1 SV=1	Back alignment and function desciption

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 128/304 (42%), Gaps = 53/304 (17%)

Query: 182 LESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRV--TNFVVCALDYETYQF--- 236
           +E  +  I + +K V++    Y +R+M ++ +    +L +  + +++  +D + YQF   
Sbjct: 1   MEKKVEYIKENDKIVLMC--NYGFRDMTLNLLKCFEKLSIDKSRYILYCMDDKAYQFFAE 58

Query: 237 ----------------SILQGLPVFNDPSAPSN---ISFNDCHFGTKCFQRVTKAKSRMV 277
                           S      +F+D +   N    S N   +G   F+ +   K  +V
Sbjct: 59  FKGIECQRFSRDDIINSSTSSTQLFHDNNTNDNKGIYSENAESYGDIGFRAICNEKPLVV 118

Query: 278 LQILKLGYNVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINL-----PRRLN 332
           L +LK GYNVL +D D+ W ++P    Y         Q +++     I+L        + 
Sbjct: 119 LDVLKKGYNVLWTDTDIVWKRDPFIHFYQD-----INQENQFTNDDDIDLYVQQDDDDIC 173

Query: 333 SGFYFARSDSSTIAAMEKVVEHAATSGLSEQPSFYDTLCGAGGSNRKGDDRCIEPETN-- 390
           +GFYF RS+  TI  ++  + +     + +Q +       + G N K  +  +    N  
Sbjct: 174 AGFYFIRSNQRTIKFIQDSI-NFLNPCIDDQIAMR-LFLKSQGINIKSKNILLSLSENDK 231

Query: 391 ---LTVHFLDRNLFPNGA---YLGLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQVL 444
              +    LD+ LFPNG     L + Q+ N+          ++HNN I G   K +R + 
Sbjct: 232 KDKIRYRLLDKKLFPNGTNYFNLKITQRDNITP-------FIIHNNCIIGHRSKKDRFIE 284

Query: 445 SGLW 448
            GLW
Sbjct: 285 YGLW 288

Specifically catalyzes the transfer of a galactosyl residue to the hydroxyproline-linked saccharide on Skp1 protein (fpaA/fpaB). Catalyzes the formation of a Gal-alpha-1,3-Fuc linkage, leading to Gal-Fuc-Gal-GlcNAc-HyPro143-Skp1.
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 3EC: 7

>sp\|Q3E6Y3\|Y1869_ARATH Uncharacterized protein At1g28695 OS=Arabidopsis thaliana GN=At1g28695 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		473
224102433		552	predicted protein [Populus trichocarpa]	0.972	0.833	0.7	0.0
359496284		874	PREDICTED: uncharacterized protein LOC10	0.995	0.538	0.684	0.0
147790757		546	hypothetical protein VITISV_008966 [Viti	0.966	0.836	0.668	0.0
356524014		770	PREDICTED: uncharacterized protein LOC10	0.968	0.594	0.656	0.0
357517311		1906	UDP-galactose:fucoside alpha-3-galactosy	0.955	0.237	0.638	1e-179
42563115		537	Nucleotide-diphospho-sugar transferase f	0.938	0.826	0.663	1e-175
449435412		1693	PREDICTED: uncharacterized protein LOC10	0.936	0.261	0.646	1e-175
12324743		535	hypothetical protein; 72471-70598 [Arabi	0.938	0.829	0.663	1e-175
449478754		1456	PREDICTED: uncharacterized LOC101214056	0.936	0.304	0.646	1e-174
297838873		537	hypothetical protein ARALYDRAFT_476193 [	0.938	0.826	0.659	1e-174

>gi\|224102433\|ref\|XP_002312675.1\| predicted protein [Populus trichocarpa] gi\|222852495\|gb\|EEE90042.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/460 (70%), Positives = 373/460 (81%)

Query: 1   MLLAWNSVELPLHNGVLPPFLYGKGIHNQWVISEALSCQQRFVFDASWTISSLFFNDPEN 60
           ML+AWN+  LPLHNGVLPPFLYGKGIHN WV++EA+S + R VFDASWTIS L  N PE+
Sbjct: 93  MLMAWNNRNLPLHNGVLPPFLYGKGIHNHWVVNEAVSSELRLVFDASWTISCLSLNYPEH 152

Query: 61  LSNQSGKESQLSGAERRSWESVGNSRLGSLYGSSFFLEVNYSGLANLVKCDRQYLFVNTT 120
            S  S + S +   E R WE  GNS LG+LYGS FF E+NYSGL NL+ C+ QYLF + T
Sbjct: 153 WSELSVRGSSVLEIENRRWEEGGNSHLGALYGSMFFREINYSGLVNLLNCEGQYLFADRT 212

Query: 121 ENIVYPVTYERLSFWKGQIFHSWRLKKLMACVGGLKLLHRRLDCCLADQLKALPPLDFPF 180
           E+ VYP   +  S W  ++  S   +K M     +K  +R L+C + D+LK    LDFPF
Sbjct: 213 EDSVYPSVCQTGSGWTRRVLRSCTQRKRMVSAENVKSQNRTLNCSMRDKLKISESLDFPF 272

Query: 181 SLESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQ 240
           SL SLLS+ AD+NKT+VLAVAGYSY++MLMSWVCRL +LRVTNF++CALD ETYQFS+LQ
Sbjct: 273 SLVSLLSITADENKTLVLAVAGYSYKDMLMSWVCRLHQLRVTNFIICALDQETYQFSVLQ 332

Query: 241 GLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNP 300
           GLPVF+DPSAP NISFNDCHFGT CFQRVTK KSRMV +ILKLGYNVLLSDVDVYWF NP
Sbjct: 333 GLPVFHDPSAPRNISFNDCHFGTTCFQRVTKVKSRMVWKILKLGYNVLLSDVDVYWFGNP 392

Query: 301 LPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAMEKVVEHAATSGL 360
           LP LY++GP VL AQSDEY  TG +NLPRRLNSGFYFARSD+S++AAMEKVV+HAA S L
Sbjct: 393 LPLLYSFGPGVLVAQSDEYNYTGPVNLPRRLNSGFYFARSDASSVAAMEKVVKHAARSNL 452

Query: 361 SEQPSFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRNLFPNGAYLGLWQKKNVRRDCA 420
           SEQPSFYDTLCG GGS R  D+RC+EPETNLT+HFLDRNLFPNGAYL LWQKKNV++ C 
Sbjct: 453 SEQPSFYDTLCGEGGSYRISDNRCVEPETNLTIHFLDRNLFPNGAYLNLWQKKNVKKACM 512

Query: 421 KKGCLVLHNNWISGRLKKLERQVLSGLWEYDAGTRMCMQR 460
           KKGCL+LHNNWISGR+KKLERQV+SGLWEYD   RMC+QR
Sbjct: 513 KKGCLILHNNWISGRVKKLERQVVSGLWEYDISRRMCLQR 552

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359496284\|ref\|XP_002271910.2\| PREDICTED: uncharacterized protein LOC100242526 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147790757\|emb\|CAN65937.1\| hypothetical protein VITISV_008966 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356524014\|ref\|XP_003530628.1\| PREDICTED: uncharacterized protein LOC100788000 [Glycine max]	Back alignment and taxonomy information

>gi\|357517311\|ref\|XP_003628944.1\| UDP-galactose:fucoside alpha-3-galactosyltransferase [Medicago truncatula] gi\|355522966\|gb\|AET03420.1\| UDP-galactose:fucoside alpha-3-galactosyltransferase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|42563115\|ref\|NP_177220.2\| Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana] gi\|332196971\|gb\|AEE35092.1\| Nucleotide-diphospho-sugar transferase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449435412\|ref\|XP_004135489.1\| PREDICTED: uncharacterized protein LOC101214056 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|12324743\|gb\|AAG52325.1\|AC011663_4 hypothetical protein; 72471-70598 [Arabidopsis thaliana] gi\|12325048\|gb\|AAG52475.1\|AC010796_14 hypothetical protein; 82031-83904 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449478754\|ref\|XP_004155410.1\| PREDICTED: uncharacterized LOC101214056 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297838873\|ref\|XP_002887318.1\| hypothetical protein ARALYDRAFT_476193 [Arabidopsis lyrata subsp. lyrata] gi\|297333159\|gb\|EFH63577.1\| hypothetical protein ARALYDRAFT_476193 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		473
TAIR\|locus:2026831		537	RAY1 "REDUCED ARABINOSE YARIV	0.938	0.826	0.663	3.5e-162
TAIR\|locus:2058769		644	XEG113 "xyloglucanase 113" [Ar	0.486	0.357	0.246	4.9e-12
TAIR\|locus:2027605		383	RGXT3 "RhamnoGalacturonan spec	0.551	0.681	0.252	5.5e-12
TAIR\|locus:2124968		360	MGP4 "male gametophyte defecti	0.543	0.713	0.250	8.6e-10
TAIR\|locus:2133392		361	RGXT1 "rhamnogalacturonan xylo	0.536	0.703	0.267	1.1e-09
TAIR\|locus:2204508		386	AT1G14590 "AT1G14590" [Arabido	0.363	0.445	0.287	2.2e-09
DICTYBASE\|DDB_G0283005		648	agtA "UDP-Gal:fucoside alpha3-	0.408	0.297	0.278	5.3e-09
TAIR\|locus:2133457		367	RGXT2 "rhamnogalacturonan xylo	0.543	0.700	0.245	5.8e-07
TAIR\|locus:2018688		338	AT1G28700 "AT1G28700" [Arabido	0.414	0.579	0.245	8.1e-07
TAIR\|locus:2018783		340	AT1G28710 "AT1G28710" [Arabido	0.418	0.582	0.242	8.2e-07

TAIR\|locus:2026831 RAY1 "REDUCED ARABINOSE YARIV 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1579 (560.9 bits), Expect = 3.5e-162, P = 3.5e-162
 Identities = 304/458 (66%), Positives = 361/458 (78%)

Query:     1 MLLAWNSVELPLHNGVLPPFLYGKGIHNQWVISEALSCQQRFVFDASWTISSLFFNDPEN 60
             M++AWN++++PLH GVLPPFLY +G HNQW+I+EA+SC++RFVFDA+ TISS F  + EN
Sbjct:    94 MIMAWNNIDMPLHCGVLPPFLYQRGTHNQWIINEAMSCKRRFVFDATSTISSFFLGNAEN 153

Query:    61 LSNQSGKESQLSGAERRSWESVGNSRLGSLYGSSFFLEVNYSGLANLVKCDRQYLFVNTT 120
             + N+S   S+    + R+WE VGNS LG LYGS +    +Y+ L  L+KC+R+Y+FV+ +
Sbjct:   154 IYNRSDNVSE---PKTRNWEYVGNSHLGQLYGSLY--SRSYT-LPKLLKCNRRYIFVSAS 207

Query:   121 ENIVYPVTYERLSFWKGQIFHSWRLKKLMACVGGLKLLHRRLDCCLADQLKALPPLDFPF 180
             E          LS  KG+       +K+ AC+   K    +LD    D+   +PPL FPF
Sbjct:   208 ERST------DLSIPKGKSLGFRTREKISACITRTKSRSLKLDFVQKDE--TVPPLKFPF 259

Query:   181 SLESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYETYQFSILQ 240
              LESLL ++ADKN+TVVL+VAGYSY++MLMSWVCRLRRL+V NF+VCALD ETYQFSILQ
Sbjct:   260 DLESLLPLVADKNRTVVLSVAGYSYKDMLMSWVCRLRRLKVPNFLVCALDDETYQFSILQ 319

Query:   241 GLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKNP 300
             GLPVF DP AP NISFNDCHFG+KCFQRVTK KSR VL+ILKLGYNVLLSDVDVYWF+NP
Sbjct:   320 GLPVFFDPYAPKNISFNDCHFGSKCFQRVTKVKSRTVLKILKLGYNVLLSDVDVYWFRNP 379

Query:   301 LPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAMEKVVEHAATSGL 360
             LP L ++GP VLAAQSDEY  T  IN PRRLNSGFYFARSDS TIAAMEKVV+HAATSGL
Sbjct:   380 LPLLQSFGPSVLAAQSDEYNTTAPINRPRRLNSGFYFARSDSPTIAAMEKVVKHAATSGL 439

Query:   361 SEQPSFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRNLFPNGAYLGLWQKKNVRRDCA 420
             SEQPSFYDTLCG GG+ R GDDRC+EPETNLTV FLDR LFPNGAY  LW K++VR +C 
Sbjct:   440 SEQPSFYDTLCGEGGAYRLGDDRCVEPETNLTVQFLDRELFPNGAYGDLWLKEDVRAECE 499

Query:   421 KKGCLVLHNNWISGRLKKLERQVLSGLWEYDAGTRMCM 458
             KK C VLHNNWISGRLKKLERQ++ GLWEYDA  RMC+
Sbjct:   500 KKHCFVLHNNWISGRLKKLERQMMKGLWEYDASMRMCV 537

GO:0005737 "cytoplasm" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IDA

GO:0042546 "cell wall biogenesis" evidence=IMP

TAIR\|locus:2058769 XEG113 "xyloglucanase 113" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027605 RGXT3 "RhamnoGalacturonan speciﬁc Xylosyltransferase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124968 MGP4 "male gametophyte defective 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2133392 RGXT1 "rhamnogalacturonan xylosyltransferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2204508 AT1G14590 "AT1G14590" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0283005 agtA "UDP-Gal:fucoside alpha3-galactosyltransferase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TAIR\|locus:2133457 RGXT2 "rhamnogalacturonan xylosyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018688 AT1G28700 "AT1G28700" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018783 AT1G28710 "AT1G28710" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_VIII001667	hypothetical protein (552 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		473
pfam03407		208	pfam03407, Nucleotid_trans, Nucleotide-diphospho-s	1e-53

>gnl\|CDD\|217539 pfam03407, Nucleotid_trans, Nucleotide-diphospho-sugar transferase	Back alignment and domain information

 Score =  178 bits (454), Expect = 1e-53
 Identities = 69/223 (30%), Positives = 102/223 (45%), Gaps = 18/223 (8%)

Query: 221 VTNFVVCALDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQI 280
           + N +V ALD E Y+     G  +    S   ++S  D  FG+K + +++  + R++L++
Sbjct: 3   LENLLVVALDEEAYKRCKELGPHICYLLSDVKDVSKKDFVFGSKTYLKMSWRRVRLLLEL 62

Query: 281 LKLGYNVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARS 340
           L+LGYN + SDVDV W +NP P LY     ++ + SD Y  T A  L   LN GF++ R 
Sbjct: 63  LELGYNFIFSDVDVVWLRNPFPLLYLPDADIIIS-SDNYDGTTADGLKNWLNGGFFYVRP 121

Query: 341 DSSTIAAMEKVVEHAAT-SGLSEQPSFYDTLCGAGGSNRKGDDRCIEPETNLTVHFLDRN 399
            + +IA  +K  E   T  GL +Q  F   L                 E      FLD  
Sbjct: 122 TNRSIALFKKWAERLLTYPGLHDQDVFNYLLREGAA-----------GELGYKCRFLDTA 170

Query: 400 LFPNGAYLGLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQ 442
           LF      G  Q ++ +     K  + +H N  SG   KL R 
Sbjct: 171 LF-----GGFCQSRDWKYVQTDKKPVAVHANCCSGTDGKLHRL 208

Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases. Length = 208

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		473
PF03407		212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	100.0
PLN00176		333	galactinol synthase	98.18
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	98.08
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	97.78
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	97.69
PF05637		239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	97.53
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	97.19
cd06914		278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	97.18
cd06430		304	GT8_like_2 GT8_like_2 represents a subfamily of GT	96.88
PLN03182		429	xyloglucan 6-xylosyltransferase; Provisional	96.22
PLN03181		453	glycosyltransferase; Provisional	96.04
COG1442		325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	95.4
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	95.39
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	94.4
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	94.36
PF03314		222	DUF273: Protein of unknown function, DUF273; Inter	90.47
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	89.28
KOG4748		364	consensus Subunit of Golgi mannosyltransferase com	86.92
PF11051		271	Mannosyl_trans3: Mannosyltransferase putative; Int	82.07
PLN02523		559	galacturonosyltransferase	81.65
PLN02829		639	Probable galacturonosyltransferase	80.81

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []	Back alignment and domain information

Probab=100.00  E-value=7.6e-39  Score=306.13  Aligned_cols=210  Identities=33%  Similarity=0.478  Sum_probs=172.1

Q ss_pred             CCCcEEEEEeCHHHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHcCCeEEEecccEeeecC
Q 043225          220 RVTNFVVCALDYETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVTKAKSRMVLQILKLGYNVLLSDVDVYWFKN  299 (473)
Q Consensus       220 gv~n~lVvAlD~~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~~~K~~vl~~lL~lGy~VL~sDvDVVWlrd  299 (473)
                      .++|++|+|+|+++++.|+++|++|+...............+|++.|++++|.|+.+++++|++||+|+++|+||||+||
T Consensus         2 ~~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~d   81 (212)
T PF03407_consen    2 LIDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRD   81 (212)
T ss_pred             ccccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecC
Confidence            36899999999999999999999988765431122124578999999999999999999999999999999999999999


Q ss_pred             CccccccCCCceEEEecCccCCCccCCCCCCcCceEEEEeeChhHHHHHHHHHHHHhc-CCCCCchhHHHHhhhcCCCCC
Q 043225          300 PLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAMEKVVEHAAT-SGLSEQPSFYDTLCGAGGSNR  378 (473)
Q Consensus       300 P~~~l~~~~daDi~~qsD~~~~~~~~~~~~~iNsGf~y~RsT~~Ti~f~e~w~~~~~~-~~~~DQ~~fN~vL~~~~g~~r  378 (473)
                      |++++ ..+++|+.+++|......+...+..+|+||||+|+|++|++|+++|.+.+.. +..+||.+||+++.+..+   
T Consensus        82 p~~~~-~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~~---  157 (212)
T PF03407_consen   82 PLPYF-ENPDADILFSSDGWDGTNSDRNGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQAA---  157 (212)
T ss_pred             cHHhh-ccCCCceEEecCCCcccchhhcCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhccc---
Confidence            99999 3358899999998765444444567899999999999999999999988765 466899999999974211   


Q ss_pred             CCCCccccCCCCeEEEEcCCCCcCCccccccccccchhhhcccCceEEEEeeccCCchhHHHHH
Q 043225          379 KGDDRCIEPETNLTVHFLDRNLFPNGAYLGLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQ  442 (473)
Q Consensus       379 ~g~~~~~~~~~gl~v~~Ld~~~FpnG~~~~~~~~kd~~~~~~~~~p~iVHaN~~~G~~~K~~Rl  442 (473)
                              ...++++++||+.+||||...+.. .+.+.....+.+||+||+||+.|.++|++||
T Consensus       158 --------~~~~~~~~~L~~~~f~~g~~~f~~-~~~~~~~~~~~~p~~vH~n~~~g~~~K~~~~  212 (212)
T PF03407_consen  158 --------RYGGLRVRFLPPSLFPNGHGYFCQ-SRDWAWVPTKNKPYIVHANCCDGKEGKRQRF  212 (212)
T ss_pred             --------CCcCcEEEEeCHHHeeccccceee-cchhhhhccccccceEEEcCCCChHhHHhhC
Confidence                    116899999999999999744322 2334333225799999999999999999986

>PLN00176 galactinol synthase	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family	Back alignment and domain information

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PLN03182 xyloglucan 6-xylosyltransferase; Provisional	Back alignment and domain information

>PLN03181 glycosyltransferase; Provisional	Back alignment and domain information

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose	Back alignment and domain information

>PLN02523 galacturonosyltransferase	Back alignment and domain information

>PLN02829 Probable galacturonosyltransferase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		473
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 69/464 (14%), Positives = 122/464 (26%), Gaps = 141/464 (30%)

Query: 39  QQRFVFDASWTISSLFFNDPENLSNQ--SGKE--------SQLSGAERRSW--ESVGNSR 86
           +  FV +           D +++     S +E          +SG  R  W   S     
Sbjct: 26  EDAFVDN-------FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 87  LGSLYGSSFFLEVNYSGLANLVKCDRQYLFVNTTENIVYPVTYERLSFWKGQIF---HSW 143
           +         L +NY  L + +K +++   + T     Y    +RL +   Q+F   +  
Sbjct: 79  VQKFVEEV--LRINYKFLMSPIKTEQRQPSMMTRM---YIEQRDRL-YNDNQVFAKYNVS 132

Query: 144 RLKKLMACVGGLK--------LLHRRLDC---CLA-DQLKALPPLD-FPFS--------- 181
           RL+  +     L         L+   L      +A D   +        F          
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 182 ---------LESLLSVIADKNKTVVLAVAGYSYREMLMSWVCRLRRLRVTNFVVCALDYE 232
                    L+ LL  I D N T   +    + +  + S    LRRL         L  +
Sbjct: 193 NSPETVLEMLQKLLYQI-DPNWTS-RSDHSSNIKLRIHSIQAELRRL---------LKSK 241

Query: 233 TYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRV---TKAKSRMVLQILKLGYNVLL 289
            Y+  +L    V  +       +     F   C  ++   T+ K   V   L       +
Sbjct: 242 PYENCLL----VLLNVQNAKAWN----AFNLSC--KILLTTRFKQ--VTDFLSAATTTHI 289

Query: 290 SDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAME 349
           S          L         +               LPR + +         S IA   
Sbjct: 290 SLDHHSM---TLTPDEVKSLLLKYLDCRPQD------LPREVLTTNPRR---LSIIAESI 337

Query: 350 KVVEHAATSGLSEQPSFYDTLCGAGGSNRKGDDRCIE--PETNLTVHFLDRNLFPNGAYL 407
           +  +  AT    +  +  D L           +  +           F   ++FP     
Sbjct: 338 R--DGLATWDNWKHVN-CDKL-------TTIIESSLNVLEPAEYRKMFDRLSVFP----- 382

Query: 408 GLWQKKNVRRDCAKKGCLVLHNNWISGRLKKLERQVLSGLWEYD 451
                 +                        +   +LS +W   
Sbjct: 383 -----PSA----------------------HIPTILLSLIWFDV 399

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		473
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	97.97
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	97.8
1g9r_A		311	Glycosyl transferase; alpha-beta structure; HET: U	97.05
3tzt_A		276	Glycosyl transferase family 8; structural genomics	96.78

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

Probab=97.97  E-value=5.4e-05  Score=76.64  Aligned_cols=160  Identities=15%  Similarity=0.074  Sum_probs=98.6

Q ss_pred             eEEEEEeChhHHHHHHHHHHHHHhcCCC-cEEEEEeC---HHHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHHHH
Q 043225          195 TVVLAVAGYSYREMLMSWVCRLRRLRVT-NFVVCALD---YETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQRVT  270 (473)
Q Consensus       195 tVIvt~~N~~y~d~l~Nwl~slr~lgv~-n~lVvAlD---~~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~~~  270 (473)
                      .-|+..+|..|+.-+.-.+.|+++.+-+ .++|+..|   ++..+.+.+.+..+...+....... .............+
T Consensus         5 a~vt~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~-~~~~~~~~~~~~~t   83 (333)
T 1ll2_A            5 AFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDS-AHLTLMKRPELGVT   83 (333)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTST-THHHHHHCGGGHHH
T ss_pred             EEEEEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcch-hhcccccccchHHH
Confidence            3445557999999999999999988754 56555553   5666777777765554332111100 00000001112456


Q ss_pred             HHHHHHHHHHHHcCC-eEEEecccEeeecCCccccccCCCceEEEecCccCCCccCCCCCCcCceEEEEeeChhHHHHHH
Q 043225          271 KAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAAME  349 (473)
Q Consensus       271 ~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~~~daDi~~qsD~~~~~~~~~~~~~iNsGf~y~RsT~~Ti~f~e  349 (473)
                      +.|..+.. +  ..| .|++.|+|++.++|+-+++...   .+.+..|.       ..+..+|+|+|.++++..   .++
T Consensus        84 ~~Kl~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~~---~~aAv~d~-------~~~~~fNsGvmlin~~~~---~~~  147 (333)
T 1ll2_A           84 LTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFERE---ELSAAPDP-------GWPDCFNSGVFVYQPSVE---TYN  147 (333)
T ss_dssp             HHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSC---SSEEEECS-------SSTTSEEEEEEEECCCHH---HHH
T ss_pred             HHHHHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCCC---ceeEEecC-------CCCcceeeeEEEEeCCHH---HHH
Confidence            67766554 2  345 6999999999999998887542   23333332       124579999999999743   344


Q ss_pred             HHHHHHhc---CCCCCchhHHHHhh
Q 043225          350 KVVEHAAT---SGLSEQPSFYDTLC  371 (473)
Q Consensus       350 ~w~~~~~~---~~~~DQ~~fN~vL~  371 (473)
                      .+++.+..   -...||.++|.++.
T Consensus       148 ~l~~~~~~~~~~~~~DQ~~LN~~f~  172 (333)
T 1ll2_A          148 QLLHVASEQGSFDGGDQGLLNTFFN  172 (333)
T ss_dssp             HHHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHH
Confidence            44444322   24579999998775

PyMOL of 1ll2

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*	Back alignment and structure

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		473
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	98.03
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	97.83

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.03  E-value=1.6e-05  Score=74.43  Aligned_cols=165  Identities=15%  Similarity=0.080  Sum_probs=106.9

Q ss_pred             CCeEEEEEeChhHHHHHHHHHHHHHhcCCC-cEEEEEeC---HHHHHHHHHCCCCeeeCCCCCCCCCCCCccccchhHHH
Q 043225          193 NKTVVLAVAGYSYREMLMSWVCRLRRLRVT-NFVVCALD---YETYQFSILQGLPVFNDPSAPSNISFNDCHFGTKCFQR  268 (473)
Q Consensus       193 d~tVIvt~~N~~y~d~l~Nwl~slr~lgv~-n~lVvAlD---~~a~~~c~~~Gip~f~~~~~~~~~s~~~~~~gs~~f~~  268 (473)
                      ++.-|...+|.+|+.-+...+.||++.+.. .++|+..+   ++..+.+...+..+...+....... .........+..
T Consensus         3 ~~A~vt~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~-~~~~~~~~~~~~   81 (263)
T d1ll2a_           3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDS-AHLTLMKRPELG   81 (263)
T ss_dssp             SEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTST-THHHHHHCGGGH
T ss_pred             ccEEEEEEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcch-hhhhhhccccch
Confidence            344444446999999999999999998764 45555543   6777788888877766543111100 001112223445


Q ss_pred             HHHHHHHHHHHHHHcCC-eEEEecccEeeecCCccccccCCCceEEEecCccCCCccCCCCCCcCceEEEEeeChhHHHH
Q 043225          269 VTKAKSRMVLQILKLGY-NVLLSDVDVYWFKNPLPSLYTYGPFVLAAQSDEYKATGAINLPRRLNSGFYFARSDSSTIAA  347 (473)
Q Consensus       269 ~~~~K~~vl~~lL~lGy-~VL~sDvDVVWlrdP~~~l~~~~daDi~~qsD~~~~~~~~~~~~~iNsGf~y~RsT~~Ti~f  347 (473)
                      .++.|..+-. +  ..| .|++.|+|++-++|+-++|....   +.+..|.       ..+...|+|++.+.++..+.+-
T Consensus        82 ~ty~Kl~i~~-l--~~ydkvlYLDaD~lv~~~id~Lf~~~~---~~a~~~~-------~~~~~~nsGv~l~~p~~~~~~~  148 (263)
T d1ll2a_          82 VTLTKLHCWS-L--TQYSKCVFMDADTLVLANIDDLFEREE---LSAAPDP-------GWPDCFNSGVFVYQPSVETYNQ  148 (263)
T ss_dssp             HHHHHGGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSCS---SEEEECS-------SSTTSEEEEEEEECCCHHHHHH
T ss_pred             hhhHHHHHhh-h--cccceEEEeCCCEEEecCHHHHhcCCc---cceeccC-------CCcccccCCcEEECccHHHHHH
Confidence            6677776643 3  345 59999999999999988885421   1111222       1245789999999999987777


Q ss_pred             HHHHHHHHhcCCCCCchhHHHHhh
Q 043225          348 MEKVVEHAATSGLSEQPSFYDTLC  371 (473)
Q Consensus       348 ~e~w~~~~~~~~~~DQ~~fN~vL~  371 (473)
                      +.+...........||..+|..+.
T Consensus       149 i~~~~~~~~~~~~~dq~~ln~~~~  172 (263)
T d1ll2a_         149 LLHVASEQGSFDGGDQGLLNTFFN  172 (263)
T ss_dssp             HHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred             HHHHHHhhCCCChhhhhHHHHHHH
Confidence            666544433445679999998775

PyMOL of d1ll2a_

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure