Citrus Sinensis ID: 043235
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GUQ5 | 1207 | Brassinosteroid LRR recep | N/A | no | 0.902 | 0.385 | 0.335 | 4e-55 | |
| Q8L899 | 1207 | Systemin receptor SR160 O | N/A | no | 0.902 | 0.385 | 0.333 | 1e-54 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.885 | 0.365 | 0.336 | 1e-53 | |
| Q9FRS6 | 1029 | Leucine-rich repeat recep | no | no | 0.889 | 0.445 | 0.317 | 6e-53 | |
| Q9ZWC8 | 1166 | Serine/threonine-protein | no | no | 0.974 | 0.430 | 0.306 | 5e-52 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.821 | 0.437 | 0.312 | 4e-51 | |
| Q9LJF3 | 1164 | Receptor-like protein kin | no | no | 0.869 | 0.384 | 0.329 | 4e-51 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.875 | 0.384 | 0.313 | 2e-50 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.819 | 0.432 | 0.311 | 1e-49 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.895 | 0.410 | 0.305 | 1e-49 |
| >sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 216 bits (550), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 169/503 (33%), Positives = 257/503 (51%), Gaps = 38/503 (7%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
++P+LP+ + L++L + N+F G P L + + ++ LD+S NNF G +P S+GE
Sbjct: 296 LVPKLPS---ESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECS 352
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
L ++D+S NNF+GKLP +S ++ + LS N F G L ++ NL L +L + +N+
Sbjct: 353 SLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNN 412
Query: 121 FSGKMTDGLLSSTL--LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN 178
+G + G+ + L+VL + NN+ G IP + N S L L +S NYL G+IP L
Sbjct: 413 LTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLG 472
Query: 179 NLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233
+L L+ + L N L L L ++++ L N + G IP +L + L + L +
Sbjct: 473 SLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSN 532
Query: 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLG 293
N+L G IP + SNL +L L N + G IP +L + L +DL+ N LNG IP
Sbjct: 533 NQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPP--- 589
Query: 294 NVPFWREATDD-----DSSEFFYANNVDSPVAYYNSSLELQLPVELHF---RQDQ--QVG 343
P ++++ + + Y N S + +L L F RQ+Q ++
Sbjct: 590 --PLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNL-------LEFGGIRQEQLDRIS 640
Query: 344 AKFVT--KNRYEFFIGSNLNY---MAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLS 398
+ Y N+ M LDLS N+ G IP ++G + + LNL +N LS
Sbjct: 641 TRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLS 700
Query: 399 GAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATF 458
G IP+ LK + LDLS N+ +G IP LT L L ++S NNLSG IP+ F TF
Sbjct: 701 GMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTF 760
Query: 459 DDCSYKGNSALCGSMIKRKCSSA 481
D + NS LCG + CSS
Sbjct: 761 PDYRFANNS-LCGYPLPIPCSSG 782
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Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. Solanum lycopersicum (taxid: 4081) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 168/503 (33%), Positives = 256/503 (50%), Gaps = 38/503 (7%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
++P+LP+ + L++L + N+F G P L + + ++ LD+S NNF G +P S+GE
Sbjct: 296 LVPKLPS---ESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECS 352
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
L ++D+S NNF+GKLP + ++ + LS N F G L ++ NL L +L + +N+
Sbjct: 353 SLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNN 412
Query: 121 FSGKMTDGLLSSTL--LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN 178
+G + G+ + L+VL + NN+ G IP + N S L L +S NYL G+IP L
Sbjct: 413 LTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLG 472
Query: 179 NLKSLEFIDLSENSLI-----SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233
+L L+ + L N L L L ++++ L N + G IP +L + L + L +
Sbjct: 473 SLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSN 532
Query: 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLG 293
N+L G IP + SNL +L L N + G IP +L + L +DL+ N LNG IP
Sbjct: 533 NQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPP--- 589
Query: 294 NVPFWREATDD-----DSSEFFYANNVDSPVAYYNSSLELQLPVELHF---RQDQ--QVG 343
P ++++ + + Y N S + +L L F RQ+Q ++
Sbjct: 590 --PLFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNL-------LEFGGIRQEQLDRIS 640
Query: 344 AKFVT--KNRYEFFIGSNLNY---MAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLS 398
+ Y N+ M LDLS N+ G IP ++G + + LNL +N LS
Sbjct: 641 TRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLS 700
Query: 399 GAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATF 458
G IP+ LK + LDLS N+ +G IP LT L L ++S NNLSG IP+ F TF
Sbjct: 701 GMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTF 760
Query: 459 DDCSYKGNSALCGSMIKRKCSSA 481
D + NS LCG + CSS
Sbjct: 761 PDYRFANNS-LCGYPLPLPCSSG 782
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Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development. Solanum peruvianum (taxid: 4082) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 173/514 (33%), Positives = 269/514 (52%), Gaps = 58/514 (11%)
Query: 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQ-----------------------KLIYLDMS 44
+K L+ LD+S+N+ +G +PE L + + L +L +
Sbjct: 357 SKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLY 416
Query: 45 KNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN 104
NN EG +P + +++L +L L N F+G++P+ I +C SL +D+ N+F G++ P+
Sbjct: 417 HNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEI-GNCTSLKMIDMFGNHFEGEIPPS 475
Query: 105 YMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLM 164
L +L L+L N G + L + L +L++++N LSG IP G L L++
Sbjct: 476 IGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLML 535
Query: 165 SENYLQGNIPVQLNNLKSLEFIDLSENSL--------ISLSNLSFVKHIYLQNNAIKGLI 216
N LQGN+P L +L++L I+LS N L S S LSF + NN + I
Sbjct: 536 YNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSF----DVTNNGFEDEI 591
Query: 217 PIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSI 276
P+ L S L L L N+L G+IP + + L +L + N L G IP QL +KL+
Sbjct: 592 PLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTH 651
Query: 277 MDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDS-PVAYYNSSLELQLPVE-- 333
+DL+ N L+GPIP LG + E S++F V+S P +N + L L ++
Sbjct: 652 IDLNNNFLSGPIPPWLGKLSQLGE-LKLSSNQF-----VESLPTELFNCTKLLVLSLDGN 705
Query: 334 -LHFRQDQQVG---AKFVTKNRYEFFIGS------NLNYMAGLDLSGNEFSGEIPWKIGQ 383
L+ Q++G A V F GS L+ + L LS N +GEIP +IGQ
Sbjct: 706 SLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQ 765
Query: 384 LQNIR-ALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSY 442
LQ+++ AL+LS N +G IP + L +E+LDLS N+L+G++P + ++ L NVS+
Sbjct: 766 LQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSF 825
Query: 443 NNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKR 476
NNL G + K+QF+ + S+ GN+ LCGS + R
Sbjct: 826 NNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSR 857
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1 | Back alignment and function description |
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Score = 209 bits (531), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 156/492 (31%), Positives = 248/492 (50%), Gaps = 34/492 (6%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
L H++ SSNNFSG LPE+LG L LD FEG++P S +K L L LS NNF
Sbjct: 151 LTHVNASSNNFSGFLPEDLGNA-TTLEVLDFRGGYFEGSVPSSFKNLKNLKFLGLSGNNF 209
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS 132
GK+P+ ++ SL+ + L N F G++ + LT L L L + +G++ L
Sbjct: 210 GGKVPK-VIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPSSLGQL 268
Query: 133 TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENS 192
L + + N L+G +P +G + L L +S+N + G IP+++ LK+L+ ++L N
Sbjct: 269 KQLTTVYLYQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGELKNLQLLNLMRNQ 328
Query: 193 LISL-----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER 247
L + + L ++ + L N++ G +P+ L ++S L LD+ NKL G IP +
Sbjct: 329 LTGIIPSKIAELPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSSNKLSGDIPSGLCYS 388
Query: 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS 307
NL L+L N G+IP ++ L + + +N ++G IP+ G++P +
Sbjct: 389 RNLTKLILFNNSFSGQIPEEIFSCPTLVRVRIQKNHISGSIPAGSGDLPMLQHLE----- 443
Query: 308 EFFYANNVDSPVA---YYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNY-- 362
NN+ + ++SL +++ F + + + + FI S+ N+
Sbjct: 444 --LAKNNLTGKIPDDIALSTSLSF---IDISFNHLSSLSSSIFSSPNLQTFIASHNNFAG 498
Query: 363 -----------MAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMI 411
++ LDLS N FSG IP +I + + +LNL +N L G IP++ + + M+
Sbjct: 499 KIPNQIQDRPSLSVLDLSFNHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMHML 558
Query: 412 ESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCG 471
LDLS N L+G IP L L NVS+N L GPIP FA D GN+ LCG
Sbjct: 559 AVLDLSNNSLTGNIPADLGASPTLEMLNVSFNKLDGPIPSNMLFAAIDPKDLVGNNGLCG 618
Query: 472 SMIKRKCSSALT 483
++ CS +L
Sbjct: 619 GVLP-PCSKSLA 629
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Involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 161/525 (30%), Positives = 252/525 (48%), Gaps = 23/525 (4%)
Query: 4 RLPNAKY----DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEM 59
++PN +Y L+ L ++ N SG++P L ++ + L+ LD+S N F G +P
Sbjct: 266 KIPNGEYWGSFQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTAC 325
Query: 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNN 119
L L+L N +G +VS + +L ++ NN G + + N ++L L L +N
Sbjct: 326 VWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSN 385
Query: 120 HFSGKMTDG---LLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ 176
F+G + G L SS +L + ++NN LSG +P +G L + +S N L G IP +
Sbjct: 386 GFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKE 445
Query: 177 LNNLKSLEFIDLSENSLI-SLSNLSFVK-----HIYLQNNAIKGLIPIALLRSSTLLTLD 230
+ L +L + + N+L ++ VK + L NN + G IP ++ R + ++ +
Sbjct: 446 IWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWIS 505
Query: 231 LRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPS 290
L N+L G+IP I S L +L L N L G +P QL + L +DL+ N L G +P
Sbjct: 506 LSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPG 565
Query: 291 CLGNVPFWREATDDDSSEF-FYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTK 349
L + +F F N + +E + + V + T+
Sbjct: 566 ELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATR 625
Query: 350 -----NRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPES 404
Y F ++ Y D+S N SG IP G + ++ LNL +N ++G IP+S
Sbjct: 626 IYSGMTMYTFSANGSMIY---FDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDS 682
Query: 405 FSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYK 464
F LK I LDLS N L G +P L L+FLS+ +VS NNL+GPIP Q TF Y
Sbjct: 683 FGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYA 742
Query: 465 GNSALCGSMIKRKCSSALTPPATPTGGGEDESDSVIDMVALRWSF 509
NS LCG + R C SA P T + ++ + + + +SF
Sbjct: 743 NNSGLCGVPL-RPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSF 786
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Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (515), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 162/518 (31%), Positives = 247/518 (47%), Gaps = 95/518 (18%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
L+ +D+ N +G++P+ +G L+YLD+S+N G+IP+S+ ++K+L L+L N
Sbjct: 97 LQSIDLQGNKLAGQIPDEIGNC-ASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQL 155
Query: 73 TGKLPRPI-------------------VSSCL----SLDWLDLSNNNFYGQLFPNYMNLT 109
TG +P + +S L L +L L N G L + LT
Sbjct: 156 TGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLTGTLSSDMCQLT 215
Query: 110 DLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169
L + N+ +G + + + + T ++L++S N ++G+IP+ IG F ++ L + N L
Sbjct: 216 GLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQITGEIPYNIG-FLQVATLSLQGNRL 274
Query: 170 QGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSS 224
G IP + +++L +DLS+N L+ L NLSF +YL N + G IP L S
Sbjct: 275 TGRIPEVIGLMQALAVLDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPSELGNMS 334
Query: 225 TLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
L L L DNKL G IP ++ + L L L N L G IP+ + L+ ++ N L
Sbjct: 335 RLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLL 394
Query: 285 NGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGA 344
+G IP N+ Y N +++ + ++PVEL
Sbjct: 395 SGSIPLAFRNL-----------GSLTYLN-------LSSNNFKGKIPVEL---------- 426
Query: 345 KFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPES 404
G +N + LDLSGN FSG IP +G L+++ LNLS N LSG +P
Sbjct: 427 ------------GHIIN-LDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAE 473
Query: 405 FSNLKMIESLDLSRNKLSG------------------------QIPPQLTELNFLSNFNV 440
F NL+ I+ +D+S N LSG +IP QLT L N NV
Sbjct: 474 FGNLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNV 533
Query: 441 SYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKRKC 478
S+NNLSG +P + F+ F S+ GN LCG+ + C
Sbjct: 534 SFNNLSGIVPPMKNFSRFAPASFVGNPYLCGNWVGSIC 571
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Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (515), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 169/513 (32%), Positives = 242/513 (47%), Gaps = 65/513 (12%)
Query: 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSR 69
+ LR L ++ N +SG++P L ++ + L LD+S N+ G +P S
Sbjct: 276 FQNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTGQLPQS-------------- 321
Query: 70 NNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMN-LTDLGSLYLDNNHFSGKMTDG 128
+SC SL L+L NN G ++ L+ + +LYL N+ SG +
Sbjct: 322 -----------FTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPIS 370
Query: 129 LLSSTLLRVLNVSNNMLSGDIPHWIGNF---SVLSVLLMSENYLQGNIPVQLNNLKSLEF 185
L + + LRVL++S+N +G++P + SVL LL++ NYL G +PV+L KSL+
Sbjct: 371 LTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLKT 430
Query: 186 IDLSENSLISLS-----NLSFVKHIYLQNNAIKGLIPIAL-LRSSTLLTLDLRDNKLFGR 239
IDLS N+L L L + + + N + G IP ++ + L TL L +N L G
Sbjct: 431 IDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTGS 490
Query: 240 IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP--F 297
+P I++ +N+ + L N L G IP + +L KL+I+ L N L G IPS LGN
Sbjct: 491 LPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNLI 550
Query: 298 WREATDDD----------------------SSEFFYANN---VDSPVAYYNSSLELQLPV 332
W + ++ +F + N D A E
Sbjct: 551 WLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAE 610
Query: 333 EL-HFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALN 391
L HF + + SN M LDLS N SG IP G + ++ LN
Sbjct: 611 RLEHFPMVHSCPKTRIYSGMTMYMFSSN-GSMIYLDLSYNAVSGSIPLGYGAMGYLQVLN 669
Query: 392 LSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
L +NLL+G IP+SF LK I LDLS N L G +P L L+FLS+ +VS NNL+GPIP
Sbjct: 670 LGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIPF 729
Query: 452 KEQFATFDDCSYKGNSALCGSMIKRKCSSALTP 484
Q TF Y NS LCG + CSS P
Sbjct: 730 GGQLTTFPLTRYANNSGLCGVPLP-PCSSGSRP 761
|
Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 160/510 (31%), Positives = 247/510 (48%), Gaps = 59/510 (11%)
Query: 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLS 68
+ +L HL +S N+ G + E +G + + L L + NNF G P S+ ++ LT+L +
Sbjct: 310 RLTQLTHLGLSENHLVGPISEEIGFL-ESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVG 368
Query: 69 RNNFTGKLPR--------------------PI---VSSCLSLDWLDLSNNNFYGQLFPNY 105
NN +G+LP PI +S+C L LDLS+N G++ P
Sbjct: 369 FNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEI-PRG 427
Query: 106 MNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165
+L + + NHF+G++ D + + + L L+V++N L+G + IG L +L +S
Sbjct: 428 FGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVS 487
Query: 166 ENYLQGNIPVQLNNLKSLEFIDLSENSLI-----SLSNLSFVKHIYLQNNAIKGLIPIAL 220
N L G IP ++ NLK L + L N +SNL+ ++ + + +N ++G IP +
Sbjct: 488 YNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEM 547
Query: 221 LRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLS 280
L LDL +NK G+IP ++ +L L L+GN G IP L L L+ D+S
Sbjct: 548 FDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDIS 607
Query: 281 RNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQ 340
N L G IP L N+ + + N+ L +P EL + +
Sbjct: 608 DNLLTGTIPGEL----------------LASLKNMQLYLNFSNNLLTGTIPKELG--KLE 649
Query: 341 QVGAKFVTKNRYEFFIGSNLNYMAG---LDLSGNEFSGEIPWKIGQ-LQNIRALNLSNNL 396
V ++ N + I +L LD S N SG IP ++ Q + I +LNLS N
Sbjct: 650 MVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNS 709
Query: 397 LSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFA 456
SG IP+SF N+ + SLDLS N L+G+IP L L+ L + ++ NNL G +P+ F
Sbjct: 710 FSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFK 769
Query: 457 TFDDCSYKGNSALCGS-------MIKRKCS 479
+ GN+ LCGS IK+K S
Sbjct: 770 NINASDLMGNTDLCGSKKPLKPCTIKQKSS 799
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 154/494 (31%), Positives = 243/494 (49%), Gaps = 72/494 (14%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
L++LD+S N SG +P ++ + Q L L + N G IP ++ ++ L ILDL++N
Sbjct: 118 LQNLDLSFNELSGDIPFSISKLKQ-LEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKL 176
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS 132
+G++PR I + + L +L L NN G + P+ LT L + NN +G + + + +
Sbjct: 177 SGEIPRLIYWNEV-LQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNC 235
Query: 133 TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENS 192
T +VL++S N L+G+IP IG F ++ L + N L G IP + +++L +DLS N
Sbjct: 236 TAFQVLDLSYNQLTGEIPFDIG-FLQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNL 294
Query: 193 LIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER 247
L L NL+F + +YL +N + G IP L S L L+L DN L G IP ++ +
Sbjct: 295 LSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKL 354
Query: 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS 307
++L L + N L+G IP+ L L+ +++ N+ +G IP + + +
Sbjct: 355 TDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAF-------QKLESMTY 407
Query: 308 EFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLD 367
+NN+ P+ PVEL S + + LD
Sbjct: 408 LNLSSNNIKGPI-----------PVEL-----------------------SRIGNLDTLD 433
Query: 368 LSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPP 427
LS N+ +G IP +G L+++ +NLS N ++G +P F NL+ I +DLS N +SG IP
Sbjct: 434 LSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPE 493
Query: 428 QLTELN-----------------------FLSNFNVSYNNLSGPIPDKEQFATFDDCSYK 464
+L +L L+ NVS+NNL G IP F+ F S+
Sbjct: 494 ELNQLQNIILLRLENNNLTGNVGSLANCLSLTVLNVSHNNLVGDIPKNNNFSRFSPDSFI 553
Query: 465 GNSALCGSMIKRKC 478
GN LCGS + C
Sbjct: 554 GNPGLCGSWLNSPC 567
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 169/553 (30%), Positives = 265/553 (47%), Gaps = 92/553 (16%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
L L +NN +G LP +LG + KL +N+F GNIP +G+ L +L L++N
Sbjct: 183 LEELVAYTNNLTGPLPRSLGNL-NKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFI 241
Query: 73 TGKLPRPI-----------------------VSSCLSLDWLDLSNNNFYGQLFPNYMNLT 109
+G+LP+ I + + SL+ L L N+ G + N+
Sbjct: 242 SGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMK 301
Query: 110 DLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169
L LYL N +G + L + + ++ S N+LSG+IP + S L +L + +N L
Sbjct: 302 SLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKL 361
Query: 170 QGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSS 224
G IP +L+ L++L +DLS NSL NL+ ++ + L +N++ G+IP L S
Sbjct: 362 TGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYS 421
Query: 225 TLLTLDLRDNKLFGRIPHQINERSNLHVL--------------LLR----------GNYL 260
L +D +N+L G+IP I ++SNL +L +LR GN L
Sbjct: 422 PLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRL 481
Query: 261 QGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE---ATDDDSSEF-------- 309
G+ P +LC+L LS ++L +NR +GP+P +G + A + SS
Sbjct: 482 TGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLS 541
Query: 310 ------FYANNVDSPVAYYNSSLEL-------------QLPVELHFRQDQQVGAKFVTKN 350
+N++ P+ ++ ++ LP EL Q+ +++N
Sbjct: 542 NLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELG--SLHQLEILRLSEN 599
Query: 351 RYE----FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIR-ALNLSNNLLSGAIPESF 405
R+ F IG NL ++ L + GN FSG IP ++G L +++ A+NLS N SG IP
Sbjct: 600 RFSGNIPFTIG-NLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEI 658
Query: 406 SNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKG 465
NL ++ L L+ N LSG+IP L+ L N SYNNL+G +P + F S+ G
Sbjct: 659 GNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLG 718
Query: 466 NSALCGSMIKRKC 478
N LCG + R C
Sbjct: 719 NKGLCGGHL-RSC 730
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| 358345705 | 703 | Receptor protein kinase-like protein [Me | 0.976 | 0.715 | 0.478 | 1e-122 | |
| 357468869 | 703 | Receptor protein kinase-like protein [Me | 0.976 | 0.715 | 0.478 | 1e-121 | |
| 357468861 | 1016 | Receptor-like protein kinase [Medicago t | 0.968 | 0.491 | 0.469 | 1e-119 | |
| 358345693 | 1011 | Receptor-like protein kinase [Medicago t | 0.968 | 0.493 | 0.469 | 1e-119 | |
| 255553269 | 2793 | receptor-kinase, putative [Ricinus commu | 0.941 | 0.173 | 0.484 | 1e-114 | |
| 359482735 | 1097 | PREDICTED: receptor-like protein 12-like | 0.984 | 0.462 | 0.455 | 1e-114 | |
| 359483099 | 1231 | PREDICTED: probable LRR receptor-like se | 0.984 | 0.411 | 0.451 | 1e-114 | |
| 359482749 | 1067 | PREDICTED: leucine-rich repeat receptor | 0.982 | 0.474 | 0.454 | 1e-112 | |
| 359482745 | 1026 | PREDICTED: leucine-rich repeat receptor | 0.982 | 0.493 | 0.444 | 1e-110 | |
| 296084515 | 798 | unnamed protein product [Vitis vinifera] | 0.980 | 0.632 | 0.469 | 1e-110 |
| >gi|358345705|ref|XP_003636916.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355502851|gb|AES84054.1| Receptor protein kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 245/512 (47%), Positives = 341/512 (66%), Gaps = 9/512 (1%)
Query: 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSR 69
+ +++LDIS N+ SG LP+++GI + Y++ S NNFEGNIP S+G+MK+L LDLS
Sbjct: 158 HSSMKYLDISINSLSGFLPKDIGIFLPSVTYMNFSSNNFEGNIPSSIGKMKKLESLDLSH 217
Query: 70 NNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGL 129
N+F+G+LP+ + + C +L +L LSNN +G + P + N ++ L+L+NN+FSG + D L
Sbjct: 218 NHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLNNNNFSGTLEDVL 276
Query: 130 LSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLS 189
++T L L++SNN SG IP IG FS + VLLMS+N L+G IP++++N+ SL+ +DLS
Sbjct: 277 GNNTGLVFLSISNNSFSGTIPSSIGTFSYIWVLLMSQNILEGEIPIEISNMSSLKILDLS 336
Query: 190 ENSLI----SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQIN 245
+N LI LS L+ ++ +YLQ N + G IP L S L LDLR+NK G+IPH ++
Sbjct: 337 QNKLIGSIPKLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRENKFSGKIPHWMD 396
Query: 246 ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFW--REATD 303
+ S L VLLL GN L+G IP QLC+L+K++IMDLSRN LN IPSC N+ F + D
Sbjct: 397 KLSELRVLLLGGNKLEGDIPIQLCRLKKINIMDLSRNMLNASIPSCFRNMSFGMRQYVDD 456
Query: 304 DDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYM 363
DD F ++ + P +N+SL +Q P L F +D Q +F TK+ F+ G L M
Sbjct: 457 DDGPTFEFSISGYLPTISFNASLSIQPPWSL-FNEDLQFEVEFRTKHYEYFYKGKVLENM 515
Query: 364 AGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSG 423
GLDLS N +G IP +IG LQ +RALNLS+N LSG IP +FSNL IESLDLS N LSG
Sbjct: 516 TGLDLSWNNLTGLIPSQIGHLQQVRALNLSHNHLSGPIPITFSNLTQIESLDLSYNNLSG 575
Query: 424 QIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKRKCSSALT 483
+IP +LT+LNFLS FNVSYNN SG P QF FD+ SY+GN LCG ++ +KC +
Sbjct: 576 KIPNELTQLNFLSTFNVSYNNFSGTPPSTGQFGGFDEDSYRGNPGLCGPLLYQKCERVES 635
Query: 484 PPATPTGGGEDESDSVIDMVALRWSFGASYAS 515
P++ + E ++++DM+ WSF ASY +
Sbjct: 636 SPSSQS-NDNGEKETMVDMITFYWSFTASYIT 666
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468869|ref|XP_003604719.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355505774|gb|AES86916.1| Receptor protein kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/512 (47%), Positives = 340/512 (66%), Gaps = 9/512 (1%)
Query: 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSR 69
+ +++LDIS N+ SG LP+++GI + Y++ S NNFEGNIP S+G+MK+L LDLS
Sbjct: 158 HSSMKYLDISINSLSGFLPKDIGIFLPSVTYMNFSSNNFEGNIPSSIGKMKKLESLDLSH 217
Query: 70 NNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGL 129
N+F+G+LP+ + + C +L +L LSNN +G + P + N ++ L+L+NN+FSG + D L
Sbjct: 218 NHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLNNNNFSGTLEDVL 276
Query: 130 LSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLS 189
++T L L++SNN SG IP IG FS + VLLMS+N L+G IP++++N+ SL+ +DLS
Sbjct: 277 GNNTGLVFLSISNNSFSGTIPSSIGTFSYIWVLLMSQNILEGEIPIEISNMSSLKILDLS 336
Query: 190 ENSLI----SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQIN 245
+N LI LS L+ ++ +YLQ N + G IP L S L LDLR+NK G+IPH ++
Sbjct: 337 QNKLIGSIPKLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRENKFSGKIPHWMD 396
Query: 246 ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFW--REATD 303
+ S L VLLL GN L+G IP QLC+L+K+ IMDLSRN LN IPSC N+ F + D
Sbjct: 397 KLSELRVLLLGGNKLEGDIPIQLCRLKKIDIMDLSRNMLNASIPSCFRNMSFGMRQYVDD 456
Query: 304 DDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYM 363
DD F ++ + P +N+SL +Q P L F +D Q +F TK+ F+ G L M
Sbjct: 457 DDGPTFEFSISGYLPTISFNASLSIQPPWSL-FNEDLQFEVEFRTKHYEYFYKGKVLENM 515
Query: 364 AGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSG 423
GLDLS N +G IP +IG LQ +RALNLS+N LSG IP +FSNL IESLDLS N LSG
Sbjct: 516 TGLDLSWNNLTGLIPSQIGHLQQVRALNLSHNHLSGPIPITFSNLTQIESLDLSYNNLSG 575
Query: 424 QIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKRKCSSALT 483
+IP +LT+LNFLS FNVSYNN SG P QF FD+ SY+GN LCG ++ +KC +
Sbjct: 576 KIPNELTQLNFLSTFNVSYNNFSGTPPSTGQFGGFDEDSYRGNPGLCGPLLYQKCERVES 635
Query: 484 PPATPTGGGEDESDSVIDMVALRWSFGASYAS 515
P++ + E ++++DM+ WSF ASY +
Sbjct: 636 SPSSQS-NDNGEKETMVDMITFYWSFTASYIT 666
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 243/518 (46%), Positives = 344/518 (66%), Gaps = 19/518 (3%)
Query: 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
D + +LDIS+NN SG LP+++GI + YL+ S N+FEGNIP S+G+MK+L +LD S+N
Sbjct: 427 DDMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQN 486
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
+F+G+LP+ + + C +L +L LSNN +G + P + N ++ L+L+NN+FSG + D L
Sbjct: 487 HFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLG 545
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSE 190
++T L L++SNN SG IP IG FS + LLMS+N L+G IP++++++ L+ +DLS+
Sbjct: 546 NNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDLSQ 605
Query: 191 N----SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246
N S+ LS L+ ++ +YLQ N + G IP L L LDLR+NK G+IP+ +++
Sbjct: 606 NKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDK 665
Query: 247 RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPF-WREATDD- 304
S L VLLL GN +G IP QLC+L+K++IMDLSRN LN IPSC N+ F R+ D
Sbjct: 666 FSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQYVDAV 725
Query: 305 -DSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQ------QVGAKFVTKNRYEFFIG 357
D S Y ++ +++SSL + LP+E +DQ + +F TK+ F+ G
Sbjct: 726 FDLSSILYGQHIQDTHYFFDSSLSIDLPLE----KDQLIEDLLHLEVEFRTKHYEYFYKG 781
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
L M GLDLS N+ +G IP +IG LQ IRALNLS+N LSG IP +FSNL IESLDLS
Sbjct: 782 KVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLS 841
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKRK 477
N LSG+IP +LT+LNFLS FNVSYNNLSG P QFA FD+ +Y+GN +LCG ++ RK
Sbjct: 842 YNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRK 901
Query: 478 CSSALTPPATPTGGGEDESDSVIDMVALRWSFGASYAS 515
C PP++ + E+E ++ +DM+ WSF ASY +
Sbjct: 902 CERVEPPPSSQSNDNEEE-ETGVDMITFYWSFTASYIT 938
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 243/518 (46%), Positives = 344/518 (66%), Gaps = 19/518 (3%)
Query: 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
D + +LDIS+NN SG LP+++GI + YL+ S N+FEGNIP S+G+MK+L +LD S+N
Sbjct: 427 DDMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQN 486
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
+F+G+LP+ + + C +L +L LSNN +G + P + N ++ L+L+NN+FSG + D L
Sbjct: 487 HFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLG 545
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSE 190
++T L L++SNN SG IP IG FS + LLMS+N L+G IP++++++ L+ +DLS+
Sbjct: 546 NNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDLSQ 605
Query: 191 N----SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246
N S+ LS L+ ++ +YLQ N + G IP L L LDLR+NK G+IP+ +++
Sbjct: 606 NKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDK 665
Query: 247 RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPF-WREATDD- 304
S L VLLL GN +G IP QLC+L+K++IMDLSRN LN IPSC N+ F R+ D
Sbjct: 666 FSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQYVDAV 725
Query: 305 -DSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQ------QVGAKFVTKNRYEFFIG 357
D S Y ++ +++SSL + LP+E +DQ + +F TK+ F+ G
Sbjct: 726 FDLSSILYGQHIQDTHYFFDSSLSIDLPLE----KDQLIEDLLHLEVEFRTKHYEYFYKG 781
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
L M GLDLS N+ +G IP +IG LQ IRALNLS+N LSG IP +FSNL IESLDLS
Sbjct: 782 KVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLS 841
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKRK 477
N LSG+IP +LT+LNFLS FNVSYNNLSG P QFA FD+ +Y+GN +LCG ++ RK
Sbjct: 842 YNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRK 901
Query: 478 CSSALTPPATPTGGGEDESDSVIDMVALRWSFGASYAS 515
C PP++ + E+E ++ +DM+ WSF ASY +
Sbjct: 902 CERVEPPPSSQSNDNEEE-ETGVDMITFYWSFTASYIT 938
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 251/518 (48%), Positives = 333/518 (64%), Gaps = 33/518 (6%)
Query: 4 RLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELT 63
+LP+ +++ L +L ISSN+ +G++P+++G++ L YL+MS N FEGNIP S+ +M+ L+
Sbjct: 1380 QLPSYRHE-LINLKISSNSIAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEGLS 1438
Query: 64 ILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG 123
ILDLS N F+G+LPR ++S+ L L LSNNNF G++FP MNL +L L ++NN+FSG
Sbjct: 1439 ILDLSNNYFSGELPRSLLSNSTYLVALVLSNNNFQGRIFPETMNLEELTVLDMNNNNFSG 1498
Query: 124 KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSL 183
K+ L VL++S N ++G I P+QL NL S+
Sbjct: 1499 KIDVDFFYCPRLSVLDISKNKVAGVI------------------------PIQLCNLSSV 1534
Query: 184 EFIDLSEN----SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGR 239
E +DLSEN ++ S N S +++++LQ N + GLIP L RSS L+ +DLR+NK G
Sbjct: 1535 EILDLSENRFFGAMPSCFNASSLRYLFLQKNGLNGLIPHVLSRSSNLVVVDLRNNKFSGN 1594
Query: 240 IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFW- 298
IP I++ S LHVLLL GN L G IPNQLCQLR L IMDLS N L G IPSC N+ F
Sbjct: 1595 IPSWISQLSELHVLLLGGNALGGHIPNQLCQLRNLKIMDLSHNLLCGSIPSCFHNISFGS 1654
Query: 299 --REATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFI 356
E+ S A++ DS AYY ++LEL LP L + +V +F+ K RY +
Sbjct: 1655 MVEESFSSSSIGVAMASHYDS-YAYYKATLELDLPGLLSWSSSSEVQVEFIMKYRYNSYK 1713
Query: 357 GSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
GS +N MAG+DLS NE GEIP +IG +Q IR+LNLS N LSG+IP SFSNLK +ESLDL
Sbjct: 1714 GSVINLMAGIDLSRNELRGEIPSEIGDIQEIRSLNLSYNHLSGSIPFSFSNLKNLESLDL 1773
Query: 417 SRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKR 476
N LSG+IP QL ELNFL F+VSYNNLSG I +K QF TFD+ SYKGN LCG +I R
Sbjct: 1774 RNNSLSGEIPTQLVELNFLGTFDVSYNNLSGRILEKGQFGTFDESSYKGNPELCGDLIHR 1833
Query: 477 KCSSALTPPATPTGGGEDESDSVIDMVALRWSFGASYA 514
C++ T P +P+ ++E + IDM WSF ASY
Sbjct: 1834 SCNTEATTPPSPSPDVDEEDEGPIDMFWFYWSFCASYV 1871
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 237/520 (45%), Positives = 343/520 (65%), Gaps = 13/520 (2%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
+LP PN + + LDIS N G+L EN+ + + L++S N FEG IP S+ E++
Sbjct: 535 LLPLGPNTR---INSLDISHNQLDGQLQENVAHMIPNITSLNLSNNGFEGIIPSSIAELR 591
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
L ILDLS NNF+G++P+ ++++ L+ L LSNN F+G++F NLT L LYL NN
Sbjct: 592 ALQILDLSTNNFSGEVPKQLLAAK-DLEILKLSNNKFHGEIFSRDFNLTGLLCLYLGNNQ 650
Query: 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNL 180
F+G +++ + + L VL+VSNN +SG+IP WIGN ++L L+M N +G +P +++ L
Sbjct: 651 FTGTLSNVISRISWLWVLDVSNNYMSGEIPSWIGNMTLLRTLVMGNNNFKGKLPPEISQL 710
Query: 181 KSLEFIDLSEN----SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
+ +EF+D+S+N SL SL ++ +++H++LQ N GLIP L SS LLTLD+R+N+L
Sbjct: 711 QRMEFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSNLLTLDIRENRL 770
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP 296
FG IP+ I+ L +LLLRGN L G IPN LC L ++S+MDLS N +GPIP C G++
Sbjct: 771 FGSIPNSISALLKLRILLLRGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFGHIR 830
Query: 297 FWREATDDDS-SEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFF 355
F +D+ +F Y ++S + Y ++ + + + +V +FVTKNR++F+
Sbjct: 831 FGETKKEDNVFGQFMYWYELNSDLVYAGYLVKHWEFLSPTYNEKDEV--EFVTKNRHDFY 888
Query: 356 IGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLD 415
G L +M+GLDLS N +GEIP ++G L IRALNLS+N L+G+IP+SFSNL IESLD
Sbjct: 889 RGGILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSNLSQIESLD 948
Query: 416 LSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMI 474
LS NKL G+IP +L ELNFL F+V+YNN SG +PD K QF TFD+ SY+GN LCG ++
Sbjct: 949 LSYNKLGGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPFLCGELL 1008
Query: 475 KRKCSSALTPPATPTGGGEDESDSV-IDMVALRWSFGASY 513
KRKC++++ P P+ E E+ I+ V SF SY
Sbjct: 1009 KRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSY 1048
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 235/520 (45%), Positives = 337/520 (64%), Gaps = 13/520 (2%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
+LP PN++ + LDIS N G+L +N+ + + +L++S N FEG +P S+ EM
Sbjct: 484 LLPLRPNSR---ITSLDISDNRLVGELQQNVANMIPNIEHLNLSNNGFEGILPSSIAEMS 540
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
L LDLS N+F+G++P+ ++ + L++L LSNN F+G++F NLT L L+LDNN
Sbjct: 541 SLWSLDLSANSFSGEVPKQLLVAK-DLEFLKLSNNKFHGEIFSRDFNLTSLEFLHLDNNQ 599
Query: 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNL 180
F G +++ + S+ LRVL+VSNN +SG+IP WIGN + L+ L++ N +G +P +++ L
Sbjct: 600 FKGTLSNVISRSSWLRVLDVSNNNMSGEIPSWIGNMTDLTTLVLGNNSFKGKLPPEISQL 659
Query: 181 KSLEFIDLSEN----SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
+ LEF+D+S+N SL SL ++ ++KH++LQ N GLIP L SS LLTLD+RDN+L
Sbjct: 660 QRLEFLDVSQNTLSGSLPSLKSIEYLKHLHLQGNMFTGLIPRDFLNSSNLLTLDIRDNRL 719
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP 296
FG IP+ I+ L + LLRGN L G IPNQLC L K+S+MDLS N +G IP C G++
Sbjct: 720 FGSIPNSISRLLELRIFLLRGNLLSGFIPNQLCHLTKISLMDLSNNNFSGSIPKCFGHIQ 779
Query: 297 FWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFI 356
F T+ + + + N S + Y L L +D+ +FVTKNR +
Sbjct: 780 FGDFKTEHNVYKPMF--NPYSFFSIYTGYLVKYLFFSTEAHRDEVDEVEFVTKNRSNSYG 837
Query: 357 GSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
G L++M+GLDLS N +GEIP ++G L +I ALNLS+N L G++P+SFS L IESLDL
Sbjct: 838 GGILDFMSGLDLSCNNLTGEIPRELGMLSSILALNLSHNQLKGSVPKSFSKLSQIESLDL 897
Query: 417 SRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMIK 475
S NKLSG+IPP+ LNFL FNV++NN+SG +PD KEQF TF + SY+ N LCG M+K
Sbjct: 898 SYNKLSGEIPPEFIGLNFLEVFNVAHNNISGRVPDMKEQFGTFGESSYEDNPFLCGPMLK 957
Query: 476 RKCSSALTPPATPTGGGEDESDSV--IDMVALRWSFGASY 513
RKC++++ P +P+ ++ ID V SF ASY
Sbjct: 958 RKCNTSIESPNSPSQPSQESEAKWYDIDHVVFFASFVASY 997
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 237/522 (45%), Positives = 342/522 (65%), Gaps = 16/522 (3%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
+LP PN + + LDIS N G+L EN+G + +++L++S N FEG +P S+ EM
Sbjct: 504 LLPLRPNTR---ILSLDISHNQLDGRLQENVGHMIPNIVFLNLSNNGFEGLLPSSIAEMS 560
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
L +LDLS NNF+G++P+ ++++ L L LS N F+G++F N+T L LYLDNN
Sbjct: 561 SLRVLDLSANNFSGEVPKQLLATK-DLVILKLSYNKFHGEIFSRDFNMTGLDILYLDNNQ 619
Query: 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNL 180
F G +++ + S+ L VL+VSNN +SG+IP IGN + L L+M N +G +P +++ L
Sbjct: 620 FMGTLSNVISGSSQLMVLDVSNNYMSGEIPSGIGNMTELRTLVMGNNNFRGKLPPEISQL 679
Query: 181 KSLEFIDLSEN----SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
+ ++F+D+S+N SL SL ++ +++H++LQ N GLIP L SS LLTLD+RDN+L
Sbjct: 680 QQMKFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSDLLTLDMRDNRL 739
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP 296
FG IP+ I+ L +LLLRGN G IPN LC L K+S+MDLS N +GPIP C G++
Sbjct: 740 FGSIPNSISALLELRILLLRGNLFSGFIPNHLCHLTKISLMDLSNNSFSGPIPKCFGDIR 799
Query: 297 FWREATDDDSSEFF--YANNVDSPVAYYNSSLE-LQLPVELHFRQDQQVGAKFVTKNRYE 353
F ++D F + DS Y +++ + +++ D++ +FVTKNR++
Sbjct: 800 FGEMKKENDVFRQFIDFGYGGDSRNLYVGFTVKKWEFDSDVY---DEKNEVEFVTKNRHD 856
Query: 354 FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIES 413
+ G LN+M GLDLS N +GEIP K+G+L I ALNLS+N L +IP+SFSNL IES
Sbjct: 857 SYSGDILNFMFGLDLSCNNLTGEIPHKLGKLSWIHALNLSHNQLKDSIPKSFSNLSQIES 916
Query: 414 LDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGS 472
LDLS NKLSG+IP +L ELNFL F+V+YNN+SG +PD K QF TFD+ SY+GN LCG+
Sbjct: 917 LDLSYNKLSGEIPLELVELNFLEVFSVAYNNISGRVPDTKAQFGTFDERSYEGNPFLCGT 976
Query: 473 MIKRKCSSALTPPATPTGGGEDESDSV-IDMVALRWSFGASY 513
++KRKC++++ PP P+ E E+ I+ V SF SY
Sbjct: 977 LLKRKCNTSIEPPCAPSQSFESEAKWYDINHVVFFASFTTSY 1018
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482745|ref|XP_003632825.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 230/518 (44%), Positives = 332/518 (64%), Gaps = 12/518 (2%)
Query: 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTI 64
LP + ++ LDIS N G+L EN+ + + YL++S N FEG +P S+ E++ L
Sbjct: 463 LPLERNTRIHSLDISHNQLDGQLQENVAHMIPNMKYLNLSDNGFEGILPSSIVELRALWY 522
Query: 65 LDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK 124
LDLS NNF+G++P+ ++++ L L LSNN F+G++F NL L LYL NN +G
Sbjct: 523 LDLSTNNFSGEVPKQLLAA-KDLGVLKLSNNKFHGEIFSRDFNLIRLEVLYLGNNQLTGT 581
Query: 125 MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLE 184
+++ + S+ L VL+VSNN +SG+IP IGN + L+ L++ N +G +P +++ L LE
Sbjct: 582 LSNVISKSSWLGVLDVSNNYMSGEIPSQIGNMTYLTTLVLGNNSFKGKLPPEISQLWGLE 641
Query: 185 FIDLSEN----SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRI 240
F+D+S+N SL L + +KH++LQ N GLIP L SS LLTLD+RDN+LFG I
Sbjct: 642 FLDVSQNALSGSLPCLKTMESLKHLHLQGNMFTGLIPRDFLNSSHLLTLDMRDNRLFGSI 701
Query: 241 PHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299
P+ I+ L + LL GN L G IPN LC L ++S+MDLS N +GPIP C G++ F
Sbjct: 702 PNSISALLKQLRIFLLGGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPKCFGHIRFGE 761
Query: 300 EATDDDSSEFFYA--NNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG 357
+D+ F +DS + Y ++ + ++ +V +FVTKNR +F+ G
Sbjct: 762 MKKEDNVFGQFIEIRYGMDSHLVYAGYLVKYWEDLSSVYKGKDEV--EFVTKNRRDFYRG 819
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
L +M+GLDLS N +GEIP ++G L IRALNLS+N L+G+IP+SFS+L IESLDLS
Sbjct: 820 GILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSDLSQIESLDLS 879
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMIKR 476
NKL G+IP +L ELNFL+ F+V+YNN+SG +P+ K QFATFD+ SY+GN LCG ++KR
Sbjct: 880 YNKLGGEIPLELVELNFLAVFSVAYNNISGRVPNAKAQFATFDESSYEGNPFLCGELLKR 939
Query: 477 KCSSALTPPATPTGGGEDESDSV-IDMVALRWSFGASY 513
KC++++ P P+ E E+ I+ V SF SY
Sbjct: 940 KCNTSIESPCAPSQSFESETKWYDINHVVFFASFTTSY 977
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084515|emb|CBI25536.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 243/518 (46%), Positives = 339/518 (65%), Gaps = 13/518 (2%)
Query: 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILD 66
N+K+ + LD SSN G+LP +G IF L L++S+N +GNIP S+G+M++L LD
Sbjct: 253 NSKHSHMLLLDFSSNCIHGELPPFIGSIFPGLEVLNLSRNALQGNIPSSMGDMEQLVSLD 312
Query: 67 LSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMT 126
LS NN +G+LP ++ C+SL L LSNN+ +G L P NLTDL L LDNN+FSG+++
Sbjct: 313 LSNNNLSGQLPEHMMMGCISLLVLKLSNNSLHGTL-PTKSNLTDLFFLSLDNNNFSGEIS 371
Query: 127 DGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI 186
G L+S+ L+ L++S+N L G IP+WIG+FSVLS L +S N+L G +P L L L F+
Sbjct: 372 RGFLNSSSLQALDISSNSLWGQIPNWIGDFSVLSTLSLSRNHLDGVVPTSLCKLNELRFL 431
Query: 187 DLSEN----SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242
DLS N +L +NL +K ++L+NN + G IP L +++L+TL+LRDNKL G IPH
Sbjct: 432 DLSHNKIGPTLPPCANLKKMKFLHLENNELSGPIPHVLSEATSLVTLNLRDNKLSGPIPH 491
Query: 243 QINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREAT 302
I+ S L VLLL+GN L+ IP QLCQL+ +SI+DLS N L+G IPSCL N+ F R+A
Sbjct: 492 WISLLSKLRVLLLKGNELEDSIPLQLCQLKSVSILDLSHNHLSGTIPSCLDNITFGRKAP 551
Query: 303 DDD----SSEFFYANNVDSPVAYYNSSLELQLPVELHFR-QDQQVGAKFVTKNRYEFFIG 357
D +S F + P +Y N ++Q + + F + +F+TK+ E ++G
Sbjct: 552 LMDGTFFTSAFGGTHVFPDPSSYKNQFAKVQF-IHISFGISAESEEIEFITKSWSESYMG 610
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
+ L M+GLDLSGN+ +G IP +IG L I +LNLS N L G IPE+FSNL+ IESLDLS
Sbjct: 611 NILYLMSGLDLSGNKLTGPIPPEIGNLSGIHSLNLSYNQLIGTIPETFSNLQEIESLDLS 670
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKE-QFATFDDCSYKGNSALCGSMIKR 476
N+L+ QIPPQ+ ELNFL+ F V++NNLSG P+++ QFATF+ SY+GN LCG ++R
Sbjct: 671 HNRLTSQIPPQMVELNFLTVFTVAHNNLSGKTPERKFQFATFEQSSYEGNPLLCGLPLER 730
Query: 477 KCSSALTPPATPTGGGEDESDSVIDMVALRWSFGASYA 514
+ PPA + +S + + L WSFG SY
Sbjct: 731 CSTPTSAPPALKPPVSNNRENSSWEAIFL-WSFGGSYG 767
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| TAIR|locus:2019662 | 965 | RLP15 "AT1G74190" [Arabidopsis | 0.980 | 0.523 | 0.393 | 3.1e-90 | |
| TAIR|locus:2025012 | 1083 | RLP1 "AT1G07390" [Arabidopsis | 0.974 | 0.463 | 0.398 | 1.4e-89 | |
| TAIR|locus:2101943 | 891 | RLP45 "AT3G53240" [Arabidopsis | 0.966 | 0.558 | 0.388 | 1e-84 | |
| TAIR|locus:2037313 | 1000 | RLP13 "AT1G74170" [Arabidopsis | 0.970 | 0.5 | 0.383 | 2.7e-84 | |
| TAIR|locus:2040075 | 935 | RLP21 "AT2G25470" [Arabidopsis | 0.972 | 0.535 | 0.373 | 2.8e-82 | |
| TAIR|locus:2037308 | 976 | RLP14 "AT1G74180" [Arabidopsis | 0.945 | 0.498 | 0.387 | 5.8e-82 | |
| TAIR|locus:2155909 | 908 | RLP56 "AT5G49290" [Arabidopsis | 0.959 | 0.544 | 0.344 | 3.6e-66 | |
| TAIR|locus:2020382 | 756 | RLP3 "AT1G17250" [Arabidopsis | 0.493 | 0.335 | 0.340 | 4.3e-51 | |
| TAIR|locus:2094613 | 784 | RLP38 "receptor like protein 3 | 0.941 | 0.618 | 0.306 | 6.8e-47 | |
| TAIR|locus:2120362 | 1249 | GSO1 "GASSHO1" [Arabidopsis th | 0.900 | 0.371 | 0.303 | 3.2e-45 |
| TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 209/531 (39%), Positives = 294/531 (55%)
Query: 4 RLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELT 63
++P + ++ L LD+S+N+F+ PEN+G IF L YL+ SKNNF+ N+P S+G M +
Sbjct: 407 QIPKSAHNLL-FLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQ 465
Query: 64 ILDLSRNNFTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLTDLGSLYLDNNHFSG 123
+DLSRN+F G LPR V G++FP N T++ L++DNN F+G
Sbjct: 466 YMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNILGLFMDNNLFTG 525
Query: 124 KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSL 183
K+ GL S L +L++SNN L+G IP WIG L+ LL+S+N+L+G+IP+ L N SL
Sbjct: 526 KIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSL 585
Query: 184 EFIDXXXXXXXXXXXXXFVKH----IYLQNNAIKGLIPIAXXXXXXXXXXXXXXNKLFGR 239
+ +D + LQ+N + G IP N+ G+
Sbjct: 586 QLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIP--DTLLANVEILDLRNNRFSGK 643
Query: 240 IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFW- 298
IP IN + N+ +LLLRGN G+IP+QLC L + ++DLS NRLNG IPSCL N F
Sbjct: 644 IPEFINIQ-NISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGF 702
Query: 299 -REATDDD-------SSEFFYANNVDSPVA------YYNSSLELQLPVELHFRQDQQVGA 344
+E T D S+ F ++ + Y SL P+ + ++ Q
Sbjct: 703 GKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKI 762
Query: 345 KFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPES 404
+F TK+RY+ ++G NL + G+DLS NE SGEIP + G L +RA G IP+S
Sbjct: 763 EFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKS 822
Query: 405 FSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYK 464
S+++ +ES DLS N+L G+IP QLTEL LS F VS+NNLSG IP QF TFD SY
Sbjct: 823 ISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYF 882
Query: 465 GNSALCGSMIKRKCSSALTPPATPTGGGEDESDSVIDMVALRWSFGASYAS 515
GN LCG R C++ A G + +S+IDMV+ SF A+Y +
Sbjct: 883 GNRLLCGQPTNRSCNNNSYEEAD---NGVEADESIIDMVSFYLSFAAAYVT 930
|
|
| TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
Identities = 205/515 (39%), Positives = 278/515 (53%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
L+ LDISSN + E++G++F L +++ S N+F+G IP S+GEMK L +LD+S N
Sbjct: 530 LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGL 589
Query: 73 TGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS 132
G+LP + G++F + NLT L L+LD N+F+G + +GLL S
Sbjct: 590 YGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKS 649
Query: 133 TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDXXXXX 192
L +L++S+N SG +P WIG S LS L MS N L+G P L +E +D
Sbjct: 650 KNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNS 708
Query: 193 XXXXX--XXXF--VKHIYLQNNAIKGLIPIAXXXXXXXXXXXXXXNKLFGRIPHQINERS 248
F ++ + LQNN GL+P N G+I + I++ S
Sbjct: 709 FSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTS 768
Query: 249 NLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS- 307
L +LLLR N Q IP ++CQL ++ ++DLS N+ GPIPSC + F E D S
Sbjct: 769 KLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSL 828
Query: 308 --EFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAG 365
+F ++ P Y S L L V ++ F+TK+RYE + G L YM G
Sbjct: 829 VADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHG 888
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPESFSNLKMIESLDLSRNKLSGQI 425
LDLS NE SGEIP +IG LQNIR+ G+IP+S S LK +ESLDLS NKL G I
Sbjct: 889 LDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSI 948
Query: 426 PPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKRKCSSALTP- 484
PP L +LN L N+SYNNLSG IP K TFD+ SY GN+ LCG + C S P
Sbjct: 949 PPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCISQRVPE 1008
Query: 485 -PATPTGGGEDESD---SVIDMVALRWSFGASYAS 515
P+ T E+E++ +VIDMV W+ A Y S
Sbjct: 1009 PPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYIS 1043
|
|
| TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 199/512 (38%), Positives = 279/512 (54%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+L+ LD+S NNF+ +LP+++G+I L +L++S N F GN+P S+ M+ + +DLS NN
Sbjct: 349 RLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNN 408
Query: 72 FTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
F+GKLPR + F G + + T L +L +DNN F+GK+ LL+
Sbjct: 409 FSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLN 468
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDXXXX 191
+L V+++SNN+L+G IP W+GNF L VL +S N LQG IP L N+ L +D
Sbjct: 469 LRMLSVIDLSNNLLTGTIPRWLGNF-FLEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGN 527
Query: 192 XXXXX----XXXXFVKHIYLQNNAIKGLIPIAXXXXXXXXXXXXXXNKLFGRIPHQINER 247
+ + L NN + G IP NKL G IP
Sbjct: 528 FLSGSLPLRSSSDYGYILDLHNNNLTGSIP--DTLWYGLRLLDLRNNKLSGNIP-LFRST 584
Query: 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS 307
++ V+LLR N L G+IP +LC L + ++D + NRLN IPSC+ N+ F + S
Sbjct: 585 PSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNADS 644
Query: 308 EFFYA----NNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYM 363
+++ A N ++ Y SL + L + D V +F K RY+ ++ LN M
Sbjct: 645 DWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLYMRGTLNQM 704
Query: 364 AGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPESFSNLKMIESLDLSRNKLSG 423
GLDLS NE SG IP ++G L+ +R+ G+IP SFSNL+ IESLDLS NKL G
Sbjct: 705 FGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKLHG 764
Query: 424 QIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKRKCSSALT 483
IP QLT L L FNVSYNNLSG IP +QF TF + SY GN LCGS KR C T
Sbjct: 765 TIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLCGSPTKRSCGG--T 822
Query: 484 PPATPTGGGEDESDSVIDMVALRWSFGASYAS 515
++ +D+ ++D+V L WS G +Y +
Sbjct: 823 TISSGKEYEDDDESGLLDIVVLWWSLGTTYVT 854
|
|
| TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 200/522 (38%), Positives = 276/522 (52%)
Query: 4 RLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELT 63
+LP + ++ L L++S N F+ +N G I L+ ++++ N F+GN+P S+ MK +
Sbjct: 421 QLPKSAHNLL-FLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIE 479
Query: 64 ILDLSRNNFTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLTDLGSLYLDNNHFSG 123
LDLS N F GKLPR + G++FP N T L + +DNN F+G
Sbjct: 480 FLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTG 539
Query: 124 KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSL 183
+ G S L VL++SNN L+G IP WIG L L +S N L+G IP L N+ L
Sbjct: 540 NIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYL 599
Query: 184 EFIDXXXXXXXXXX--XXXFVKH---IYLQNNAIKGLIPIAXXXXXXXXXXXXXXNKLFG 238
+ +D + H + LQNN + G+IP N+L G
Sbjct: 600 QLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNNLSGVIP--DTLLLNVIVLDLRNNRLSG 657
Query: 239 RIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFW 298
+P IN + N+ +LLLRGN G+IP+Q C L + ++DLS N+ NG IPSCL N F
Sbjct: 658 NLPEFINTQ-NISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSFG 716
Query: 299 REATDDD-----SSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYE 353
DD S F A + PV Y+ S L + + + Q +F TK+RY+
Sbjct: 717 LRKGDDSYRYDVPSRFGTAKD---PV-YFESLLMID-EFNMVNETNSQTKIEFATKHRYD 771
Query: 354 FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPESFSNLKMIES 413
++G NL + G+DLS NE SGEIP ++G L + A G I ESFS LK +ES
Sbjct: 772 AYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVES 831
Query: 414 LDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSM 473
LDLS N+L G IP QLT++ L+ FNVSYNNLSG +P QF TF+ SY GN LCG
Sbjct: 832 LDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGKS 891
Query: 474 IKRKCSSALTPPATPTGGGEDESDSVIDMVALRWSFGASYAS 515
I C+S PT G + +S +DM + WSF A+Y +
Sbjct: 892 IDISCASN---NFHPTDNGVEADESTVDMESFYWSFVAAYVT 930
|
|
| TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
Identities = 199/533 (37%), Positives = 279/533 (52%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
I P +P ++ L+ D S+NN GK P+ + L+ L+ S N F+G P S+GEMK
Sbjct: 382 IFP-IPTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMK 438
Query: 61 ELTILDLSRNNFTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLTDLGSLYLDNNH 120
++ LDLS NNF+GKLPR V F G+ P N L L +DNN
Sbjct: 439 NISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNL 498
Query: 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNL 180
F+G + GL +ST+LR+L++SNN LSG IP W+ F L +L+S N+L+G IP L +
Sbjct: 499 FTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGM 558
Query: 181 KSLEFIDXXXXXXXXXXXXXFVK----HIYLQNNAIKGLIPIAXXXXXXXXXXXXXXNKL 236
L F+D +++L NN G PI NKL
Sbjct: 559 PFLSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTG--PIPDTLLKSVQILDLRNNKL 616
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP 296
G IP Q ++ ++++LLL+GN L G IP +LC L + ++DLS N+LNG IPSCL N+
Sbjct: 617 SGSIP-QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLS 675
Query: 297 FWREATDDDSSEFFYANNVDSPVAYYNSSLELQL--------PVELHFRQDQQVGAKFVT 348
F R +D+ A N+ P ++ +SLE++L +E+ Q+ KF
Sbjct: 676 FGR--LQEDAM----ALNI--PPSFLQTSLEMELYKSTFLVDKIEVDRSTYQETEIKFAA 727
Query: 349 KNRYEFFIGSN------LNYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIP 402
K RY+ + G + L M G+DLS NE SG IP ++G L +R G+IP
Sbjct: 728 KQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIP 787
Query: 403 ESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCS 462
SFS L +ESLDLS N L G IP L+ L L+ F+VS NNLSG IP QF TF++ S
Sbjct: 788 SSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGRQFNTFEEES 847
Query: 463 YKGNSALCGSMIKRKCSSALTPPATPTGGGEDESDSVIDMVALRWSFGASYAS 515
Y GN LCG R C + +P G E++ + IDM+ +S + Y +
Sbjct: 848 YLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVT 900
|
|
| TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 204/527 (38%), Positives = 281/527 (53%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
KL+ LD S+N+ +G LP+N+G + +L++++ S N F+GN+P S+GEM +++ LDLS NN
Sbjct: 430 KLQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNN 489
Query: 72 FTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
F+G+LPR ++ F G + P LT L L + NN F+G++ GL +
Sbjct: 490 FSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRT 549
Query: 132 STLLRVLNVSNNMLSGDIPHWIG-NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDXXX 190
L + + SNN L+G I I + S L +LL+S N L+G +P L + L F+D
Sbjct: 550 LVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSG 609
Query: 191 XXXXXXXXXXFVKHIY-----LQNNAIKGLIPIAXXXXXXXXXXXXXXNKLFGRIPHQIN 245
V +Y L NN+ G +P+ NKL G IP +N
Sbjct: 610 NLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTLLENAYILDLRN--NKLSGSIPQFVN 667
Query: 246 ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP--------- 296
+ LLLRGN L G IP +LC L + ++DLS N+LNG IP CL ++
Sbjct: 668 T-GKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGL 726
Query: 297 --FWREATDDDSSEF-FYANN--VDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNR 351
F +E + DS + FY + VD + YY+S+ + VE+ +F K R
Sbjct: 727 SGFSQEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMI---VEI----------EFAAKQR 773
Query: 352 YEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPESFSNLKMI 411
Y+ F G L+YM GLDLS NE SG IP ++G L +RA +IP +FS LK I
Sbjct: 774 YDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDI 833
Query: 412 ESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCG 471
ESLDLS N L G IP QLT L L+ FNVS+NNLSG IP QF TF+D SY GN LCG
Sbjct: 834 ESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCG 893
Query: 472 SMIKRKCSSALTPPATPTGGGEDESD----SVIDMVALRWSFGASYA 514
+ R C GG E+E D + IDMV L W+ G++YA
Sbjct: 894 TPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYA 940
|
|
| TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 178/516 (34%), Positives = 255/516 (49%)
Query: 12 KLRHLDISSNNFS-GKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGE-MKELTILDLSR 69
+L L + +N+F+ ++P ++ L LD S+NN G P + G + L ++ S
Sbjct: 368 ELEVLQLKNNSFTIFQMPTSV----HNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSN 423
Query: 70 NNFTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLT-DLGSLYLDNNHFSGKMTDG 128
N F G P + G+L ++++ L L L +N FSG
Sbjct: 424 NGFQGNFPSSM-GEMYNISFLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPR 482
Query: 129 LLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDX 188
+ T L VL ++NN+ +G I + L +L MS N+L+G +P L + L F+D
Sbjct: 483 QTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDL 542
Query: 189 XXXXXXXX--XXXXFVKHIYLQNNAIKGLIPIAXXXXXXXXXXXXXXNKLFGRIPHQINE 246
++L NN G PI NKL G IP Q +
Sbjct: 543 SGNLLSGALPSHVSLDNVLFLHNNNFTG--PIPDTFLGSIQILDLRNNKLSGNIP-QFVD 599
Query: 247 RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDS 306
++ LLLRGN L G IP+ LC+ K+ ++DLS N+LNG IPSC N+ F A ++
Sbjct: 600 TQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGL-ARKEEI 658
Query: 307 SEFFYANNVDS-PVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGS------N 359
+ ++ A ++S + +Y S+ ++ L + ++ KF TK RY+ +IG+
Sbjct: 659 TNYYVAVALESFYLGFYKSTFVVE-NFRLDYSNYFEIDVKFATKQRYDSYIGAFQFSEGT 717
Query: 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPESFSNLKMIESLDLSRN 419
LN M GLDLS NE SG IP ++G L +RA IP+SFS L+ IESLDLS N
Sbjct: 718 LNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYN 777
Query: 420 KLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKRKCS 479
L G IP QLT L L+ FNVSYNNLSG IP +QF TFD+ SY GN LCG C
Sbjct: 778 MLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQFNTFDENSYLGNPLLCGPPTDTSCE 837
Query: 480 SALTPPATPTGGGEDESDSVIDMVALRWSFGASYAS 515
+ GG ED+ + IDM+ WS +Y +
Sbjct: 838 TKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYVT 873
|
|
| TAIR|locus:2020382 RLP3 "AT1G17250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 4.3e-51, Sum P(2) = 4.3e-51
Identities = 94/276 (34%), Positives = 136/276 (49%)
Query: 249 NLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP--FWREATDDDS 306
NL + G+ L+G IP L +L+ L+++DLS N+L G IP LG P F+ + +++
Sbjct: 476 NLQIFASGGSGLRGEIPAWLIKLKSLAVIDLSHNQLVGSIPGWLGTFPHLFYIDLSENLL 535
Query: 307 S-----EFFYANNVDSPVAYYNSSLE-LQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNL 360
S + F + S AY + L+LPV F V T +Y
Sbjct: 536 SGELPKDLFQLKALMSQKAYDATERNYLKLPV---FVSPNNV----TTHQQYNQLF---- 584
Query: 361 NYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPESFSNLKMIESLDLSRNK 420
+ G+ + N G IP ++GQL+ + G IP S L +E LDLS N
Sbjct: 585 SLPPGIYIRRNNLKGSIPIEVGQLKVLHVLELSHNYLSGIIPHELSKLTSLERLDLSNNH 644
Query: 421 LSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKRKCSS 480
LSG+IP LT L+++S FNV N+L GPIP QF TF ++KGN LCG ++ C +
Sbjct: 645 LSGRIPWSLTSLHYMSYFNVVNNSLDGPIPTGSQFDTFPQANFKGNPLLCGGILLTSCKA 704
Query: 481 ALTPPATPTGGG--EDESD-SVIDMVALRWSFGASY 513
+ PAT T EDE + I ++ + F SY
Sbjct: 705 STKLPATTTNKADTEDEEELKFIFILGVATGFFVSY 740
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| TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 6.8e-47, P = 6.8e-47
Identities = 158/516 (30%), Positives = 225/516 (43%)
Query: 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLS 68
K L + +S N F G + +L LD+S NNF G +P S+ ++ L +LDLS
Sbjct: 251 KISSLDKIQLSQNQFEGPIDFGNTSSSSRLTMLDISHNNFIGRVPSSLSKLVNLELLDLS 310
Query: 69 RNNFTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYM-NLTDLGSLYLDNNHFS--GKM 125
NNF G PR I GQ+ P ++ ++L S+ L +N F GK
Sbjct: 311 HNNFRGLSPRSI-SKLVNLTSLDISYNKLEGQV-PYFIWKPSNLQSVDLSHNSFFDLGKS 368
Query: 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185
+ +++ L LN+ +N L G IP WI NF + L +S+N G+IP L N
Sbjct: 369 VE-VVNGAKLVGLNLGSNSLQGPIPQWICNFRFVFFLDLSDNRFTGSIPQCLKNSTDFNT 427
Query: 186 IDXXXXXXXXXX-----XXXFVKHIYLQNNAIKGLIPIAXXXXXXXXXXXXXXNKLFGRI 240
++ ++ + + N G +P + NK+
Sbjct: 428 LNLRNNSLSGFLPELCMDSTMLRSLDVSYNNFVGKLPKSLMNCQDMEFLNVRGNKIKDTF 487
Query: 241 PHQINERSNLHVLLLRGNYLQGRIPNQLCQLR--KLSIMDLSRNRLNGPIPS-CLGNVPF 297
P + R +L VL+LR N G + N L +LSI+D+S N G +P N
Sbjct: 488 PFWLGSRKSLMVLVLRSNAFYGPVYNSTTYLGFPRLSIIDISNNDFVGSLPQDYFAN--- 544
Query: 298 WRE-ATDDDSSEFFYANNVDSPVAYYNSSLELQLP--VELHFRQ---DQQVGAKFVTKNR 351
W E AT D + YA N S Y +Q V +F + K V +
Sbjct: 545 WTEMATVWDINRLNYARNTSSRTIQYGGLQTIQRSNYVGDNFNMHADSMDLAYKGVDTDF 604
Query: 352 YEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAXXXXXXXXXGAIPESFSNLKMI 411
F G + +D SGN FSG IP IG L + G IP S +N+ +
Sbjct: 605 NRIFRGFKV-----IDFSGNRFSGHIPRSIGLLSELLHLNLSGNAFTGNIPPSLANITNL 659
Query: 412 ESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCG 471
E+LDLSRN LSG+IP L L+FLSN N S+N+L G +P QF T + S+ GN L G
Sbjct: 660 ETLDLSRNNLSGEIPRSLGNLSFLSNINFSHNHLQGFVPRSTQFGTQNCSSFVGNPGLYG 719
Query: 472 SMIKRKCSSALTPPATPTGGGEDESDSVIDMVALRW 507
+ C + P PT D S S ++ L W
Sbjct: 720 --LDEICRESHHVPV-PTSQQHDGSSSELEEPVLNW 752
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| TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 3.2e-45, P = 3.2e-45
Identities = 150/495 (30%), Positives = 240/495 (48%)
Query: 5 LPNAKYD--KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKEL 62
+P A ++ +L L + +N G L ++ + L +L + NN EG +P + +++L
Sbjct: 376 IPEALFELVELTDLYLHNNTLEGTLSPSISNL-TNLQWLVLYHNNLEGKLPKEISALRKL 434
Query: 63 TILDLSRNNFTGKLPRPIVXXXXXXXXXXXXXXXFYGQLFPNYMNLTDLGSLYLDNNHFS 122
+L L N F+G++P+ I F G++ P+ L +L L+L N
Sbjct: 435 EVLFLYENRFSGEIPQEI-GNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELV 493
Query: 123 GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKS 182
G + L + L +L++++N LSG IP G L L++ N LQGN+P L +L++
Sbjct: 494 GGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRN 553
Query: 183 LEFIDXXXXXXXXXXXXXFVKHIYLQ----NNAIKGLIPIAXXXXXXXXXXXXXXNKLFG 238
L I+ YL NN + IP+ N+L G
Sbjct: 554 LTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTG 613
Query: 239 RIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFW 298
+IP + + L +L + N L G IP QL +KL+ +DL+ N L+GPIP LG +
Sbjct: 614 KIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQL 673
Query: 299 REATDDDSSEFFYANNVDS-PVAYYNSSLELQLPVE---LHFRQDQQVG---AKFVTKNR 351
E S++F V+S P +N + L L ++ L+ Q++G A V
Sbjct: 674 GELKLS-SNQF-----VESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLD 727
Query: 352 YEFFIGS------NLNYMAGLDLSGNEFSGEIPWKIGQLQNIR-AXXXXXXXXXGAIPES 404
F GS L+ + L LS N +GEIP +IGQLQ+++ A G IP +
Sbjct: 728 KNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPST 787
Query: 405 FSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYK 464
L +E+LDLS N+L+G++P + ++ L NVS+NNL G + K+QF+ + S+
Sbjct: 788 IGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFL 845
Query: 465 GNSALCGSMIKRKCS 479
GN+ LCGS + R C+
Sbjct: 846 GNTGLCGSPLSR-CN 859
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00033797001 | SubName- Full=Chromosome undetermined scaffold_69, whole genome shotgun sequence; (965 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 515 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-58 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-55 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-52 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-49 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-15 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 8e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 8e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.001 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 1e-58
Identities = 163/457 (35%), Positives = 230/457 (50%), Gaps = 31/457 (6%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
LR+L++S+NNF+G +P G I L LD+S N G IP +G L +LDL N
Sbjct: 120 LRYLNLSNNNFTGSIPR--GSIPN-LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS 132
GK+P +++ SL++L L++N GQ+ + L +YL N+ SG++ +
Sbjct: 177 VGKIP-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235
Query: 133 TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENS 192
T L L++ N L+G IP +GN L L + +N L G IP + +L+ L +DLS+NS
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295
Query: 193 L--------ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244
L I L NL ++L +N G IP+AL L L L NK G IP +
Sbjct: 296 LSGEIPELVIQLQNLEI---LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352
Query: 245 NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREA--- 301
+ +NL VL L N L G IP LC L + L N L G IP LG R
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412
Query: 302 ----TDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG 357
+ + SEF P+ Y+ L ++ R+ + ++ R +FF G
Sbjct: 413 DNSFSGELPSEF-----TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467
Query: 358 ----SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIES 413
+ LDLS N+FSG +P K+G L + L LS N LSG IP+ S+ K + S
Sbjct: 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVS 527
Query: 414 LDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
LDLS N+LSGQIP +E+ LS ++S N LSG IP
Sbjct: 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 8e-55
Identities = 148/468 (31%), Positives = 229/468 (48%), Gaps = 25/468 (5%)
Query: 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSR 69
+ L+ LD+ N GK+P +L + L +L ++ N G IP +G+MK L + L
Sbjct: 163 FSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221
Query: 70 NNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGL 129
NN +G++P I SL+ LDL NN G + + NL +L L+L N SG + +
Sbjct: 222 NNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280
Query: 130 LSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLS 189
S L L++S+N LSG+IP + L +L + N G IPV L +L L+ + L
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340
Query: 190 ENSLISLSNLSFVKH-----IYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244
N + KH + L N + G IP L S L L L N L G IP +
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400
Query: 245 NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDD 304
+L + L+ N G +P++ +L + +D+S N L G I S ++P +
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL-QMLSL 459
Query: 305 DSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMA 364
++FF P ++ + LE L ++Q GA + +L+ +
Sbjct: 460 ARNKFFG----GLPDSFGSKRLE-----NLDLSRNQFSGA---VPRKL-----GSLSELM 502
Query: 365 GLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424
L LS N+ SGEIP ++ + + +L+LS+N LSG IP SFS + ++ LDLS+N+LSG+
Sbjct: 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562
Query: 425 IPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGS 472
IP L + L N+S+N+L G +P F + + GN LCG
Sbjct: 563 IPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 2e-52
Identities = 149/452 (32%), Positives = 227/452 (50%), Gaps = 40/452 (8%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
++ +++S+N SG +P+++ L YL++S NNF G+IP G + L LDLS N
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML 152
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS 132
+G++P I S SL LDL N G++ + NLT L L L +N G++ L
Sbjct: 153 SGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211
Query: 133 TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENS 192
L+ + + N LSG+IP+ IG + L+ L + N L G IP L NLK+L+++ L +N
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271
Query: 193 LI-----SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER 247
L S+ +L + + L +N++ G IP +++ L L L N G+IP +
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331
Query: 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS 307
L VL L N G IP L + L+++DLS N L G IP L S
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-----------SSG 380
Query: 308 EFFYANNVDSPVAYYNSSLELQLPVEL----HFRQDQQVGAKFVTKNRYEFFIGSNLNYM 363
F + +++SLE ++P L R+ + F + EF + L +
Sbjct: 381 NLF-------KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF---TKLPLV 430
Query: 364 AGLDLSGNEFSGEI---PWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNK 420
LD+S N G I W + LQ L+L+ N G +P+SF + K +E+LDLSRN+
Sbjct: 431 YFLDISNNNLQGRINSRKWDMPSLQ---MLSLARNKFFGGLPDSFGS-KRLENLDLSRNQ 486
Query: 421 LSGQIPPQLTELNFLSNFNVSYNNLSGPIPDK 452
SG +P +L L+ L +S N LSG IPD+
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 1e-49
Identities = 148/478 (30%), Positives = 219/478 (45%), Gaps = 83/478 (17%)
Query: 11 DKLRHLDISSNNFSGKLPENLGII---FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDL 67
D L++L S+ N S + GI +++ +D+S N G I ++ + + ++L
Sbjct: 43 DPLKYL--SNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINL 100
Query: 68 SRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTD 127
S N +G +P I ++ SL +L+LSNNN F+G +
Sbjct: 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNN------------------------FTGSIPR 136
Query: 128 GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFID 187
G + L L++SNNMLSG+IP+ IG+FS L VL + N L G IP L NL SLEF+
Sbjct: 137 GSIP--NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194
Query: 188 LSENSLI-----SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242
L+ N L+ L + +K IYL N + G IP + ++L LDL N L G IP
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254
Query: 243 QINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREAT 302
+ NL L L N L G IP + L+KL +DLS N L+G IP + +
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL------- 307
Query: 303 DDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNY 362
+ E + ++++ ++PV L ++L
Sbjct: 308 --QNLEILH---------LFSNNFTGKIPVAL-----------------------TSLPR 333
Query: 363 MAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS 422
+ L L N+FSGEIP +G+ N+ L+LS N L+G IPE + + L L N L
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393
Query: 423 GQIPPQLTELNFLSNFNVSYNNLSGPIPD---KEQFATFDDCSYKGNSALCGSMIKRK 477
G+IP L L + N+ SG +P K F D S N+ L G + RK
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS---NNNLQGRINSRK 448
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 365 GLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424
GL L G IP I +L++++++NLS N + G IP S ++ +E LDLS N +G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 425 IPPQLTELNFLSNFNVSYNNLSGPIPDKE-----QFATFDDCSYKGNSALCGSMIKRKCS 479
IP L +L L N++ N+LSG +P A+F+ + N+ LCG R C
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLRACG 538
Query: 480 SALT 483
L+
Sbjct: 539 PHLS 542
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
S L ++ ++LSGN G IP +G + ++ L+LS N +G+IPES L + L+L+
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498
Query: 418 RNKLSGQIPPQL-------TELNFLSN 437
N LSG++P L NF N
Sbjct: 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 201 FVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYL 260
F+ + L N ++G IP + + L +++L N + G IP + ++L VL L N
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 261 QGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299
G IP L QL L I++L+ N L+G +P+ LG R
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 19/100 (19%)
Query: 169 LQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLT 228
L+G IP ++ L+ L+ I+LS NS I+G IP +L ++L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNS-------------------IRGNIPPSLGSITSLEV 470
Query: 229 LDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQL 268
LDL N G IP + + ++L +L L GN L GR+P L
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 387 IRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
I L L N L G IP S L+ ++S++LS N + G IPP L + L ++SYN+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 447 GPIPD 451
G IP+
Sbjct: 480 GSIPE 484
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 19/110 (17%)
Query: 138 LNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS 197
L + N L G IP+ I L + +S N ++GNIP L ++ SLE +DLS NS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF---- 478
Query: 198 NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER 247
G IP +L + ++L L+L N L GR+P + R
Sbjct: 479 ---------------NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 5 LPN--AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKEL 62
+PN +K L+ +++S N+ G +P +LG I L LD+S N+F G+IP S+G++ L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSL 492
Query: 63 TILDLSRNNFTGKLP 77
IL+L+ N+ +G++P
Sbjct: 493 RILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 8e-08
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 114 LYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI 173
L LDN G + + + L+ +N+S N + G+IP +G+ + L VL +S N G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 174 PVQLNNLKSLEFIDLSENSL 193
P L L SL ++L+ NSL
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLS 146
+D L L N G + + L L S+ L N G + L S T L VL++S N +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 147 GDIPHWIGNFSVLSVLLMSENYLQGNIPVQL 177
G IP +G + L +L ++ N L G +P L
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 16 LDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGK 75
L + + G +P ++ + L +++S N+ GNIP S+G + L +LDLS N+F G
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 76 LPRPIVSSCLSLDWLDLSNNNFYGQL 101
+P + SL L+L+ N+ G++
Sbjct: 482 IPESL-GQLTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 65 LDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK 124
L L G +P I S L ++LS N+ G + P+ ++T L L L N F+G
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 125 MTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
+ + L T LR+LN++ N LSG +P +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 12/240 (5%)
Query: 51 NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTD 110
N P S E + L L+ ++ T L +S LSLD L S + N +NL
Sbjct: 36 NFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLD-GSENLLNLLP 94
Query: 111 LGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSV-LSVLLMSENYL 169
L SL L+ N ++ LL T L L++ NN ++ DIP IG L L +S+N +
Sbjct: 95 LPSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI 152
Query: 170 QGNIPVQLNNLKSLEFIDLSENSLISLS----NLSFVKHIYLQNNAIKGLIPIALLRSST 225
+ ++P L NL +L+ +DLS N L L NLS + ++ L N I +P + S
Sbjct: 153 E-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA 210
Query: 226 LLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
L LDL +N + + ++ NL L L N +P + L L +DLS N+++
Sbjct: 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQIS 268
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 366 LDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKL 421
LDLS N + IP L N++ L+LS N L+ PE+FS L + SLDLS N L
Sbjct: 5 LDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 386 NIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNL 445
N+++L+LSNN L+ +F L ++ LDLS N L+ P + L L + ++S NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 8e-04
Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 11/231 (4%)
Query: 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDL 67
+ L LD+ +NN + +P +G++ L LD+S N E ++P + + L LDL
Sbjct: 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170
Query: 68 SRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTD 127
S N+ + S L+ LDLS N L P L+ L L L NN ++
Sbjct: 171 SFNDLSDLPKLLSNLSNLN--NLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLS 226
Query: 128 GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFID 187
L + L L +SNN D+P IGN S L L +S N Q + L +L +L +D
Sbjct: 227 SLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNN--QISSISSLGSLTNLRELD 283
Query: 188 LSENSLISLSNLSFVKHI--YLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
LS NSL + L + + L N + L + L +S LL ++ N
Sbjct: 284 LSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGE 334
|
Length = 394 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 43/255 (16%)
Query: 60 KELTILDLSRNNFTGKLPRPIVSSCLS-------LDWLDLSNNNFYG---QLFPNYMNLT 109
L L LS N TG++PR + S L L LDLS+N + + + +
Sbjct: 51 PSLKELCLS-LNETGRIPR-GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSS 108
Query: 110 DLGSLYLDNNHFSG----KMTDGLLSSTL-LRVLNVSNNMLSGD-IPHWIGNFSV---LS 160
L L L+NN + GL L L + N L G L
Sbjct: 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK 168
Query: 161 VLLMSENYLQGN----IPVQLNNLKSLEFIDLSENSL---------ISLSNLSFVKHIYL 207
L ++ N + + L +LE +DL+ N L +L++L ++ + L
Sbjct: 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228
Query: 208 QNNAI--KG---LIPIALLRSSTLLTLDLRDNKL----FGRIPHQINERSNLHVLLLRGN 258
+N + G L L + +LLTL L N + + + E+ +L L LRGN
Sbjct: 229 GDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288
Query: 259 YLQGRIPNQLCQLRK 273
L +
Sbjct: 289 KFGEEGAQLLAESLL 303
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 11/249 (4%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
+P L L+ LD+S N LP L L LD+S N+ ++P + +
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS-DLPKLLSNLSN 187
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
L LDLS N + LP I +L+ LDLSNN+ +L + NL +L L L NN
Sbjct: 188 LNNLDLSGNKIS-DLPPEI-ELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-K 243
Query: 122 SGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN-NL 180
+ + + + + L L++SNN +S +G+ + L L +S N L +P+ L
Sbjct: 244 LEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLL 301
Query: 181 KSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRI 240
++L L+ + + + P AL +L L DN
Sbjct: 302 LLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDN-ALDES 360
Query: 241 PHQINERSN 249
N
Sbjct: 361 NLNRYIVKN 369
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.98 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.95 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.95 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.94 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.93 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.9 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.84 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.84 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.8 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.78 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.76 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.7 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.4 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.38 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.34 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.29 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.27 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.27 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.26 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.25 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.21 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.2 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.16 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.16 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 99.15 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.14 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 99.11 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.09 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.06 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.06 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 99.02 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 99.0 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.59 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.58 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.46 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.44 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.4 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.32 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.31 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.27 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.18 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.14 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.11 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.07 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.06 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 98.01 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.97 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.95 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.86 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.84 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.7 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.52 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.32 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.31 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.02 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.81 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.75 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.71 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.52 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.62 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.3 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 95.09 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 94.33 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 94.33 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.72 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.63 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.51 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 93.43 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.29 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 92.34 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 92.34 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 91.62 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 90.08 | |
| smart00365 | 26 | LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | 83.06 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=450.77 Aligned_cols=458 Identities=34% Similarity=0.512 Sum_probs=281.2
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
.+++|++|++++|++++.+|... +++|++|+|++|.+++..|..++++++|++|++++|.+.+.+|..+ .++++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~---l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~ 191 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGS---IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLE 191 (968)
T ss_pred cCCCCCEEECcCCccccccCccc---cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCC
Confidence 55666666666666665555422 4566666666666665566666666666666666666654555443 5566666
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcc
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (515)
+|++++|.+++..|..++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++++++|++|++++|.
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 66666666655555666666666666666666665566666666666666666666655556666666666666666666
Q ss_pred ccccccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchh
Q 043235 169 LQGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 243 (515)
Q Consensus 169 l~~~~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 243 (515)
+.+..|..+..+++|+.|++++|.+.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 655555555556666666666655531 124455555555555555555555555555555555555555555555
Q ss_pred hhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCC----------------
Q 043235 244 INERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS---------------- 307 (515)
Q Consensus 244 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~---------------- 307 (515)
+..+++|+.|++++|++.+..|..++.+++|+.|++++|++.+..|..+..++.|+.+....+.
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 431 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC
Confidence 5555555555555555554444444444444444444444444444444444444333222110
Q ss_pred --------cccccC----CCCCCc--cccCCcccccCccccccccccccceeeeccCcccc---ccccccccCCEEEcCC
Q 043235 308 --------EFFYAN----NVDSPV--AYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF---FIGSNLNYMAGLDLSG 370 (515)
Q Consensus 308 --------~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~ 370 (515)
...... ...... ...........+..... ..+.......+.... .....+++|++|+|++
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS---KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc---ccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 000000 000000 00000000000000000 011111111221111 0123478899999999
Q ss_pred CcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC
Q 043235 371 NEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 371 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
|++.+.+|..+..+++|++|+|++|++++.+|..|..+++|+.|+|++|++++.+|..+..+++|++|++++|++++.+|
T Consensus 509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCcccccCCCCCCCCc
Q 043235 451 DKEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 451 ~~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
..+++.++...++.||+.+|+.+
T Consensus 589 ~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 589 STGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999754
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=430.13 Aligned_cols=463 Identities=32% Similarity=0.460 Sum_probs=384.8
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
+..+++|++|++++|++++.+|..++..+++|++|+|++|.+++..|. ..+++|++|++++|.+++.+|..+ ..+++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~ 165 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSS 165 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCC
Confidence 467899999999999999899999885689999999999999987775 568999999999999987788765 88999
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCc
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP 241 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~ 241 (515)
|.+.+.+|..+..+++|+.|++++|.+.. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 99999999999999999999999998843 3468899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcc-----cccC--C
Q 043235 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEF-----FYAN--N 314 (515)
Q Consensus 242 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~-----~~~~--~ 314 (515)
..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..|..+..++.++.+....+... .+.. .
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999998888777766544322110 0000 0
Q ss_pred CCCCccccCCcccccCcc-----------ccccc-----------cccccceeeeccCccccc--cccccccCCEEEcCC
Q 043235 315 VDSPVAYYNSSLELQLPV-----------ELHFR-----------QDQQVGAKFVTKNRYEFF--IGSNLNYMAGLDLSG 370 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~-----------~~~~~-----------~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~Ls~ 370 (515)
....... ........+. .+..+ ....+....+..+..... .....++|+.|++++
T Consensus 406 L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 406 LRRVRLQ-DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR 484 (968)
T ss_pred CCEEECc-CCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcC
Confidence 0000000 0000000000 00000 001111111111111100 011246799999999
Q ss_pred CcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC
Q 043235 371 NEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 371 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
|++++..|..+..+++|+.|+|++|++.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|++++.+|
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CcccCCCCcccccCCCCCCCCc
Q 043235 451 D-KEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 451 ~-~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
. ...+..++.+++.+|+..+..|
T Consensus 565 ~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 565 KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hhHhcCcccCEEeccCCcceeeCC
Confidence 8 4567889999999999887554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=348.73 Aligned_cols=394 Identities=23% Similarity=0.227 Sum_probs=350.1
Q ss_pred CccEEeCcCCcCCCCC-----chhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 12 KLRHLDISSNNFSGKL-----PENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~-----p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
.-+.||++++.+. .+ +..+ ++..+.|++++|+++...+..|.++++|+.+++.+|.++ .+|... ....+
T Consensus 53 ~~~lldcs~~~le-a~~~~~l~g~l---p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sgh 126 (873)
T KOG4194|consen 53 NTRLLDCSDRELE-AIDKSRLKGFL---PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGH 126 (873)
T ss_pred CceeeecCccccc-cccccccCCcC---ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccc
Confidence 4578899999886 33 3322 457889999999999999999999999999999999999 999843 33456
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|+.|+|.+|.|+....+.+..++.|+.|||+.|.|+.+....|..-.++++|+|++|.|+......|..+.+|.+|.|+.
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 99999999999988888899999999999999999977777787778999999999999988888999999999999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCc
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP 241 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~ 241 (515)
|+++...+..|.++++|+.|+|..|+|.. +..+++|+.|.|..|.|..+-..+|..+.++++|+|+.|++.....
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 99998888889999999999999999954 4488999999999999999999999999999999999999998889
Q ss_pred hhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccc
Q 043235 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAY 321 (515)
Q Consensus 242 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 321 (515)
.|+.+++.|+.|+|++|.|..+-++++..+++|+.|+|++|+|+...+..|.
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~---------------------------- 338 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR---------------------------- 338 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH----------------------------
Confidence 9999999999999999999999999999999999999999999865554443
Q ss_pred cCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccC
Q 043235 322 YNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAI 401 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 401 (515)
.+..|++|+|++|.+...-...|..+.+|++|||++|.++..+
T Consensus 339 -------------------------------------~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 339 -------------------------------------VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred -------------------------------------HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 2678899999999999777778999999999999999997654
Q ss_pred ---hhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCCCCCCCccCC
Q 043235 402 ---PESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKR 476 (515)
Q Consensus 402 ---~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~c~~~l~~ 476 (515)
...|.+|++|+.|++.+|+|..+...+|.+++.|++|||.+|.|..+-|..-....++.+.+..-..+|+|.++.
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHH
Confidence 457889999999999999999777889999999999999999999888874444488888888888999998764
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=328.97 Aligned_cols=366 Identities=23% Similarity=0.249 Sum_probs=324.8
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
-....+.||+++|.+. .+...++..+++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ .+..+.++.++.|+
T Consensus 76 lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alr 152 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALR 152 (873)
T ss_pred Cccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhh
Confidence 3456688999999998 555455555899999999999999 78887777888999999999999 78877778899999
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcc
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (515)
.||||.|.|+.+....|..-.++++|+|++|+|+....+.|..+.+|.+|.|++|+++...+..|.++++|+.|+|..|+
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 99999999998777788888899999999999999999999999999999999999998777889999999999999999
Q ss_pred ccccccccccCCCCCcEEeCCCCCCCCcC-----CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchh
Q 043235 169 LQGNIPVQLNNLKSLEFIDLSENSLISLS-----NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 243 (515)
Q Consensus 169 l~~~~~~~l~~l~~L~~L~L~~n~l~~l~-----~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 243 (515)
+...-.-.|.++++|+.|.+..|.+..+. .+.++++|+|+.|+++.+-..++.+++.|+.|++|+|.|..+.++.
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 98554667999999999999999997765 6888999999999999998999999999999999999999999999
Q ss_pred hhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccC
Q 043235 244 INERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYN 323 (515)
Q Consensus 244 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (515)
+...++|+.|+|++|+|+...+..|..+..|++|+|++|+++......|
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af------------------------------- 361 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF------------------------------- 361 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH-------------------------------
Confidence 9999999999999999999999999999999999999999963222222
Q ss_pred CcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcccccc---chhccccCCeeccCCcccccc
Q 043235 324 SSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW---KIGQLQNIRALNLSNNLLSGA 400 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~ 400 (515)
..+++|++|||++|.+...+.+ .|.++++|+.|++.+|++..+
T Consensus 362 ----------------------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 362 ----------------------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred ----------------------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence 2378899999999998865543 377899999999999999978
Q ss_pred ChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccC
Q 043235 401 IPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443 (515)
Q Consensus 401 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 443 (515)
...+|.++.+|++|||.+|.|..+-|.+|..+ .|++|-+..-
T Consensus 408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred chhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 88899999999999999999998999999998 8888877653
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=298.40 Aligned_cols=445 Identities=28% Similarity=0.372 Sum_probs=343.3
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
-..++.+++++|.+. .+.+++.. +..|.+|++.+|++. ..|.+++.+..++.++.++|++. .+|+.+ ..+.+|+.
T Consensus 44 qv~l~~lils~N~l~-~l~~dl~n-L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~ 118 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLE-VLREDLKN-LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVK 118 (565)
T ss_pred hcchhhhhhccCchh-hccHhhhc-ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhh
Confidence 345788999999998 77777776 688999999999999 78999999999999999999999 999988 67899999
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (515)
++.++|.+. ..++.++.+..|+.++..+|+++ ..|.++..+.++..+++.+|++....|..+. ++.|++|+...|.+
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLL 195 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhh
Confidence 999999997 56788999999999999999998 6788888999999999999999965555554 99999999999998
Q ss_pred cccccccccCCCCCcEEeCCCCCC---CCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhc
Q 043235 170 QGNIPVQLNNLKSLEFIDLSENSL---ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246 (515)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~L~~n~l---~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 246 (515)
. .+|..++.+.+|+.|++..|++ ++++++..|+++++..|.|.-+..+...+++++.+||+.+|+++ ..|+.+..
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 8 7888899999999999999998 45557888999999999999877777779999999999999998 78999999
Q ss_pred CCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCc------ccccccCCCCCcccccCCCCC---
Q 043235 247 RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP------FWREATDDDSSEFFYANNVDS--- 317 (515)
Q Consensus 247 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~------~l~~~~~~~~~~~~~~~~~~~--- 317 (515)
+.+|++||+++|.|+ ..|..++++ .|+.|-+.+|++.. +-..+-+.. .++.....++....-......
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 999999999999999 778889999 99999999999852 111111110 111100000000000000000
Q ss_pred -----CccccC--------Ccccc-cCcccc-ccccccccceeeeccC-----------------------ccccc---c
Q 043235 318 -----PVAYYN--------SSLEL-QLPVEL-HFRQDQQVGAKFVTKN-----------------------RYEFF---I 356 (515)
Q Consensus 318 -----~~~~~~--------~~~~~-~~~~~~-~~~~~~~~~~~~~~~~-----------------------~~~~~---~ 356 (515)
+..+.. ..... ..|.++ ...+...+.....+++ ....| .
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 000000 00000 000000 0000000000111111 11111 1
Q ss_pred ccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCC
Q 043235 357 GSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLS 436 (515)
Q Consensus 357 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 436 (515)
.+.+++|..|+|++|-+. .+|..++.+..|++|++++|++. .+|+++..+..++.+-.++|++....|+.+.++.+|.
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 244888999999999998 78999999999999999999998 8899999999999999999999977777799999999
Q ss_pred EEecccCcccccCCCCcccCCCCcccccCCCCC
Q 043235 437 NFNVSYNNLSGPIPDKEQFATFDDCSYKGNSAL 469 (515)
Q Consensus 437 ~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~ 469 (515)
+|||.+|.+....|..+.+++++.+.+.|||+-
T Consensus 509 tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 999999999988888899999999999999975
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=289.91 Aligned_cols=422 Identities=25% Similarity=0.365 Sum_probs=304.7
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
.++..+.+|++++|++. .+|+.++. +..++.++.++|+++ .+|..+..+.+|+.+++++|.+. .+|+++ ..+..|
T Consensus 65 ~nL~~l~vl~~~~n~l~-~lp~aig~-l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l 139 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS-QLPAAIGE-LEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDL 139 (565)
T ss_pred hcccceeEEEeccchhh-hCCHHHHH-HHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhh
Confidence 35777899999999998 89999988 678999999999999 78999999999999999999998 888887 568889
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCc
Q 043235 88 DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167 (515)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (515)
+.++..+|+++ ..|.++.++.+|..+++.+|++....+..+. ++.|++||...|.++ .+|..++.+.+|..|++..|
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence 99999999997 5678888888999999999998855555444 888999999888887 67778888888888889888
Q ss_pred cccccccccccCCCCCcEEeCCCCCCCCcC-----CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCch
Q 043235 168 YLQGNIPVQLNNLKSLEFIDLSENSLISLS-----NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242 (515)
Q Consensus 168 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~-----~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 242 (515)
++. ..| .|.++..|+++.++.|++..++ +++++..|+++.|++++. |..+.-+.+|+.||+|+|.|+ ..|.
T Consensus 217 ki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~is-~Lp~ 292 (565)
T KOG0472|consen 217 KIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNNDIS-SLPY 292 (565)
T ss_pred ccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcccCCccc-cCCc
Confidence 888 555 6788888888888888885554 677788888888888775 666667777888888888887 5566
Q ss_pred hhhcCCCcCEEEccCccCCC-------------------------------------C-CCccc---cCCCC--------
Q 043235 243 QINERSNLHVLLLRGNYLQG-------------------------------------R-IPNQL---CQLRK-------- 273 (515)
Q Consensus 243 ~~~~l~~L~~L~L~~n~i~~-------------------------------------~-~~~~~---~~l~~-------- 273 (515)
.++++ +|+.|-+.+|.+.. . .+..+ ....+
T Consensus 293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence 77777 78888887776541 0 00000 01122
Q ss_pred ------------------CCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccc
Q 043235 274 ------------------LSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELH 335 (515)
Q Consensus 274 ------------------L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
.+..++++|++. .+|..+..+..+............|.. ..
T Consensus 372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~--------------------~~ 430 (565)
T KOG0472|consen 372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVP--------------------LE 430 (565)
T ss_pred cccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccch--------------------HH
Confidence 344555555553 344433332222221111111111100 00
Q ss_pred cccccccceeeeccCccccc--cccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCe
Q 043235 336 FRQDQQVGAKFVTKNRYEFF--IGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIES 413 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 413 (515)
....+.+..-...++-.... .+..+..|+.||+++|++. ..|.+...+..++.+-.++|++..+.+..+.+|.+|.+
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 01111111111222211111 1233667999999999998 88998888889999999999999788888999999999
Q ss_pred eeCCCCcccccCCccccCCCCCCEEecccCcccccCCC--CcccCCCCcccccCCC
Q 043235 414 LDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD--KEQFATFDDCSYKGNS 467 (515)
Q Consensus 414 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~~~l~~~~~~gn~ 467 (515)
|||.+|.+. .+|..++++++|++|++++|+|. .|. ...-.+...+++.+++
T Consensus 510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred eccCCCchh-hCChhhccccceeEEEecCCccC--CCHHHHhccChHHHHHHhccc
Confidence 999999999 88999999999999999999998 444 2223444455555543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=296.58 Aligned_cols=366 Identities=24% Similarity=0.357 Sum_probs=315.2
Q ss_pred CCCccEEeCcCCcCC-CCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 10 YDKLRHLDISSNNFS-GKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~-~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
++-++-+|+++|.++ +..|.+... +++++.|.|...++. .+|+.++.+.+|++|.+++|++. ++-..+ +.++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence 455788999999998 589999988 799999999999998 79999999999999999999998 666555 7899999
Q ss_pred EEEccCcccc-ccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCc
Q 043235 89 WLDLSNNNFY-GQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167 (515)
Q Consensus 89 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (515)
.+++.+|++. +-+|..+..+..|.+|+|++|++. ..|..+...+++-.|+|++|+|..+....|.++..|-.|+|++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 9999999885 345777889999999999999998 78999999999999999999999666667889999999999999
Q ss_pred cccccccccccCCCCCcEEeCCCCCC-----CCcCCCCcccEEEcccCcee-eeccccccCCCCccEEeccCCccCCcCc
Q 043235 168 YLQGNIPVQLNNLKSLEFIDLSENSL-----ISLSNLSFVKHIYLQNNAIK-GLIPIALLRSSTLLTLDLRDNKLFGRIP 241 (515)
Q Consensus 168 ~l~~~~~~~l~~l~~L~~L~L~~n~l-----~~l~~l~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~ 241 (515)
++. ..|..+..+..|++|+|++|.+ ..++.+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 998 6677789999999999999987 45668888999999987644 346889999999999999999997 889
Q ss_pred hhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccc
Q 043235 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAY 321 (515)
Q Consensus 242 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 321 (515)
..+..+++|+.|+|++|+|+ .+........+|++|++|+|+++ .+|.++.+
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------------------------- 289 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------------------------- 289 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------
Confidence 99999999999999999999 45556677789999999999997 77877765
Q ss_pred cCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcc-ccccchhccccCCeeccCCcccccc
Q 043235 322 YNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSG-EIPWKIGQLQNIRALNLSNNLLSGA 400 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~ 400 (515)
++.|+.|++.+|+++- -+|..++.+.+|+++..++|.+. .
T Consensus 290 --------------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-l 330 (1255)
T KOG0444|consen 290 --------------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-L 330 (1255)
T ss_pred --------------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-c
Confidence 4556667777777653 35777888888888888888887 7
Q ss_pred ChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC
Q 043235 401 IPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 401 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
.|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+=.-..|.
T Consensus 331 VPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred CchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 8888888888888888888887 7888888888888888888876666554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-35 Score=279.78 Aligned_cols=366 Identities=24% Similarity=0.353 Sum_probs=317.3
Q ss_pred ccCCcEEECcCCccc-ccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCE
Q 043235 35 FQKLIYLDMSKNNFE-GNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGS 113 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 113 (515)
++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|..+ +.+.+|++|.+++|++.. +...+..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence 456788899999999 688999999999999999999998 999987 789999999999999974 4577889999999
Q ss_pred EEcccCCCC-CcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCC
Q 043235 114 LYLDNNHFS-GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENS 192 (515)
Q Consensus 114 L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 192 (515)
+.+..|++. .-+|..+..+..|..|||++|++. ..|..+..-+++-.|+|++|+|..++-..|.+++-|-.|||++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 999999986 346777888999999999999998 789889999999999999999996555567799999999999999
Q ss_pred CCCcC----CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC-CcCchhhhcCCCcCEEEccCccCCCCCCcc
Q 043235 193 LISLS----NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF-GRIPHQINERSNLHVLLLRGNYLQGRIPNQ 267 (515)
Q Consensus 193 l~~l~----~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 267 (515)
+..++ .+..|++|.|++|.+...--..+..+++|++|.+++.+=+ ..+|.++..+.+|..+|++.|.+. ..|+.
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 97776 6788999999999887554445666778889999987644 357888999999999999999998 89999
Q ss_pred ccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeee
Q 043235 268 LCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFV 347 (515)
Q Consensus 268 ~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
+..+++|+.|+||+|+|+.. ..+.
T Consensus 241 ly~l~~LrrLNLS~N~iteL-~~~~------------------------------------------------------- 264 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITEL-NMTE------------------------------------------------------- 264 (1255)
T ss_pred HhhhhhhheeccCcCceeee-eccH-------------------------------------------------------
Confidence 99999999999999999731 1110
Q ss_pred ccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccc-cChhhhcCccCCCeeeCCCCcccccCC
Q 043235 348 TKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG-AIPESFSNLKMIESLDLSRNKLSGQIP 426 (515)
Q Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 426 (515)
....+|++|+||.|+++ .+|.++..++.|+.|++.+|+++- -+|..++++..|+.+..++|.+. ..|
T Consensus 265 ----------~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVP 332 (1255)
T KOG0444|consen 265 ----------GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVP 332 (1255)
T ss_pred ----------HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCc
Confidence 12467899999999999 899999999999999999999863 37999999999999999999998 899
Q ss_pred ccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCcc
Q 043235 427 PQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMI 474 (515)
Q Consensus 427 ~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~l 474 (515)
+.+..+..|+.|.|+.|++.. +|+ ...+..++.+++..||.+--+|=
T Consensus 333 EglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCCC
Confidence 999999999999999999984 555 55678889999999998765543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-33 Score=280.37 Aligned_cols=415 Identities=26% Similarity=0.346 Sum_probs=246.8
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
|+.||+++|.+. ..|..+.. +.+|+.|+++.|.|. ..|.+..++.+|++|.|.+|.+. .+|.++ ..+.+|++|++
T Consensus 47 L~~l~lsnn~~~-~fp~~it~-l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITL-LSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccc-cCCchhhh-HHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhH-Hhhhccccccc
Confidence 666666666665 56665555 456666666666666 45566666666666666666665 566554 55666666666
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
+.|.+. ..|..+..+..++.+..++|.-... ++.. .++.+++..|.+.+.++..+..+.. .|++++|.+. .
T Consensus 122 S~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~ 192 (1081)
T KOG0618|consen 122 SFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V 192 (1081)
T ss_pred chhccC-CCchhHHhhhHHHHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h
Confidence 666654 4455555555555555555511101 1111 1566666666666666655555555 5777777766 2
Q ss_pred ccccccCCCCCcEEeCCCCCCCCcC-CCCc----------------------ccEEEcccCceeeeccccccCCCCccEE
Q 043235 173 IPVQLNNLKSLEFIDLSENSLISLS-NLSF----------------------VKHIYLQNNAIKGLIPIALLRSSTLLTL 229 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~~l~-~l~~----------------------L~~L~L~~n~i~~~~~~~~~~~~~L~~L 229 (515)
..+..+.+|+.|....|++..+. ..++ |++++++.|+++++ |.++..+.+|+.+
T Consensus 193 --~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l 269 (1081)
T KOG0618|consen 193 --LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEAL 269 (1081)
T ss_pred --hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcc-hHHHHhcccceEe
Confidence 23455566666666666654443 3344 44555555555543 2555555555555
Q ss_pred eccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcc-cccccCCCCCc
Q 043235 230 DLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPF-WREATDDDSSE 308 (515)
Q Consensus 230 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~-l~~~~~~~~~~ 308 (515)
+..+|+++ ..|..+...++|+.|.+..|.+. -+|....+++.|++|+|..|.+....+..+..... ++.+.......
T Consensus 270 ~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 270 NANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred cccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc
Confidence 55555553 44444444555555555555555 45555666777777777777775322222211111 11111000000
Q ss_pred ccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc---ccccccccCCEEEcCCCcCccccccchhccc
Q 043235 309 FFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF---FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQ 385 (515)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 385 (515)
-. .+ .+... ....+..-...++.... .....+.+|+.|+|++|++.......+.++.
T Consensus 348 ~~------lp-~~~e~-------------~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle 407 (1081)
T KOG0618|consen 348 ST------LP-SYEEN-------------NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE 407 (1081)
T ss_pred cc------cc-cccch-------------hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH
Confidence 00 00 00000 00000011111111110 1123488999999999999955555678999
Q ss_pred cCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCccccc-CCCCcccCCCCccccc
Q 043235 386 NIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGP-IPDKEQFATFDDCSYK 464 (515)
Q Consensus 386 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~l~~~~~~ 464 (515)
.|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|+|.|+++.. +|.....++++.+++.
T Consensus 408 ~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 408 ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeecc
Confidence 9999999999999 78899999999999999999999 677 899999999999999999864 4445555999999999
Q ss_pred CCCCC
Q 043235 465 GNSAL 469 (515)
Q Consensus 465 gn~~~ 469 (515)
||.++
T Consensus 485 GN~~l 489 (1081)
T KOG0618|consen 485 GNTRL 489 (1081)
T ss_pred CCccc
Confidence 99974
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-31 Score=242.39 Aligned_cols=418 Identities=21% Similarity=0.200 Sum_probs=242.6
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcC-CcCcccCchHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSR-NNFTGKLPRPI 80 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~l~~~~ 80 (515)
|.++|..-.+....++|..|+|+ .+|+..|..+++||+|||++|.|+.+.|++|.+++.|..|.+.+ |+|+ .+|...
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~ 135 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGA 135 (498)
T ss_pred cccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhH
Confidence 34566666666777777777777 67776666677777777777777777777777777766666655 6776 777777
Q ss_pred HhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCC------------C
Q 043235 81 VSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSG------------D 148 (515)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------------~ 148 (515)
|.++..|+.|.+.-|++.-...+.|..+++|..|.+.+|.+..+....|..+..++++.+..|.+.. .
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 7777777777777777766666667777777777777777765544566677777777776665321 1
Q ss_pred cChhccCCCCccEEEccCccccccccccccCCCCCcEE--eCCCC--CC-----CCcCCCCcccEEEcccCceeeecccc
Q 043235 149 IPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI--DLSEN--SL-----ISLSNLSFVKHIYLQNNAIKGLIPIA 219 (515)
Q Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L--~L~~n--~l-----~~l~~l~~L~~L~L~~n~i~~~~~~~ 219 (515)
.|..++.........+.+.++..+.+..|... ++.+ .++.. .. ..+..+++|++|++++|+|+++.+.+
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 12222222222333333333333322222211 1111 11111 11 22447888999999999999988889
Q ss_pred ccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccc
Q 043235 220 LLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299 (515)
Q Consensus 220 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~ 299 (515)
|.+...+++|.|..|+|..+....|.++..|+.|+|.+|+|+...|.+|..+..|.+|++-.|++.... .+.++.
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC-----~l~wl~ 368 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC-----RLAWLG 368 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc-----chHHHH
Confidence 999999999999999998777788888999999999999999888899999999999999888874211 111111
Q ss_pred cccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCE-EEcCCCcCccccc
Q 043235 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAG-LDLSGNEFSGEIP 378 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~ 378 (515)
....... ..-......+.+............+......... ....... -...++.+.+ ..-|+..+. .+|
T Consensus 369 ~Wlr~~~--~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~--~~~~s~~----cP~~c~c~~tVvRcSnk~lk-~lp 439 (498)
T KOG4237|consen 369 EWLRKKS--VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEEL--GCLTSSP----CPPPCTCLDTVVRCSNKLLK-LLP 439 (498)
T ss_pred HHHhhCC--CCCCCCCCCCchhccccchhccccccccCCcccc--CCCCCCC----CCCCcchhhhhHhhcccchh-hcC
Confidence 1000000 0000000000100000000000000000000000 0000000 0001222222 223333333 444
Q ss_pred cchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccC
Q 043235 379 WKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443 (515)
Q Consensus 379 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 443 (515)
..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+|....-..|.++++|.+|-|++|
T Consensus 440 ~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 440 RGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4332 24567888888887 55554 56677 7888888888666677888888888888876
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-30 Score=258.72 Aligned_cols=431 Identities=23% Similarity=0.248 Sum_probs=276.9
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
++.|+++.|-+- ..|-.+....-+|+.|++++|.+. ..|..+..+.+|+.|+++.|.|. .+|.+. .++.+|+++.|
T Consensus 23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL 98 (1081)
T KOG0618|consen 23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNL 98 (1081)
T ss_pred HHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhhee
Confidence 666777777665 334333322345777777777777 57777777777777777777777 777554 56777777777
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
.+|.+. ..|..+..+.+|++|+++.|++. ..|..+..+..++.+..++|.-... ++... ++.+++..|.+.+.
T Consensus 99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGS 171 (1081)
T ss_pred ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccc
Confidence 777765 55677777777777777777776 5666777777777777777722112 22222 77888888888877
Q ss_pred ccccccCCCCCcEEeCCCCCCCC--cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCc
Q 043235 173 IPVQLNNLKSLEFIDLSENSLIS--LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNL 250 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~~--l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 250 (515)
++..+..+.. .|||++|.+.. +..+++|+.+....|++..... ..++++.|+.++|.++...+. ....+|
T Consensus 172 ~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl 243 (1081)
T KOG0618|consen 172 FLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNL 243 (1081)
T ss_pred hhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccc
Confidence 7777776666 79999999873 3477888888888888776422 234666677777766533222 122466
Q ss_pred CEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCC------CCCccccCC
Q 043235 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNV------DSPVAYYNS 324 (515)
Q Consensus 251 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~ 324 (515)
+++++++|+++ .+|++++.+.+|+.++..+|+++ .+|..+.....++.+....+..-+..... .+.....+.
T Consensus 244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred eeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 66777777666 44466666677777777666663 44443333333332211100000000000 000000000
Q ss_pred cccccCccccc--cccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccCh
Q 043235 325 SLELQLPVELH--FRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIP 402 (515)
Q Consensus 325 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 402 (515)
...... .... ......+............+....++.|+.|++.+|.+++.....+.+++.|+.|+|++|++.....
T Consensus 322 L~~lp~-~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 322 LPSLPD-NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred ccccch-HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 000000 0000 0000000000000001113344558889999999999998877789999999999999999996666
Q ss_pred hhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCC
Q 043235 403 ESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNS 467 (515)
Q Consensus 403 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~ 467 (515)
..+.++..|++|+||+|+++ .+|.....+..|++|...+|++. ..|+..+...++.+++.-|.
T Consensus 401 s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccch
Confidence 78899999999999999999 78899999999999999999998 56788888888888887663
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-29 Score=231.67 Aligned_cols=397 Identities=17% Similarity=0.183 Sum_probs=277.9
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
-..|.++-.++ ++|..+ ++....++|..|.|+.+.+.+|+.+++||.|||++|.|+ .|.+..|.++++|..|-+.
T Consensus 49 ~~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 49 GIVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred ceEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhh
Confidence 35778888888 899887 578999999999999888999999999999999999999 8888889999998888776
Q ss_pred C-ccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc--
Q 043235 94 N-NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ-- 170 (515)
Q Consensus 94 ~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 170 (515)
+ |+|+....+.|+++..|+.|.+.-|++.....++|..++++..|.+..|.+..+....|..+..++++.+..|.+.
T Consensus 124 g~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 124 GNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred cCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 6 9999888888999999999999999999888899999999999999999998555558999999999999988732
Q ss_pred ----------ccccccccCCCCCcEEeCCCCCCCCcCCCC---cccEE---EcccCceeee-ccccccCCCCccEEeccC
Q 043235 171 ----------GNIPVQLNNLKSLEFIDLSENSLISLSNLS---FVKHI---YLQNNAIKGL-IPIALLRSSTLLTLDLRD 233 (515)
Q Consensus 171 ----------~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~---~L~~L---~L~~n~i~~~-~~~~~~~~~~L~~L~Ls~ 233 (515)
...|..++......-..+.+.++..+..-. .++.+ ..+.+...+. +...|..+++|++|+|++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 122233333333333444444443333111 12222 1122222222 335789999999999999
Q ss_pred CccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccC
Q 043235 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYAN 313 (515)
Q Consensus 234 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 313 (515)
|+|+++-+.+|.+...++.|.|..|++..+-...|.++..|++|+|++|+|+...|.+|..+.++..+..-.+. +...-
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np-~~CnC 362 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP-FNCNC 362 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc-ccCcc
Confidence 99999999999999999999999999997778899999999999999999999999999888777764332111 00000
Q ss_pred CCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcc---ccccch---------
Q 043235 314 NVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSG---EIPWKI--------- 381 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~--------- 381 (515)
.. .+... ++.- +.......-.....++.+.+++..+.+ ..|++.
T Consensus 363 ~l---~wl~~---------Wlr~------------~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP 418 (498)
T KOG4237|consen 363 RL---AWLGE---------WLRK------------KSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCP 418 (498)
T ss_pred ch---HHHHH---------HHhh------------CCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCC
Confidence 00 00000 0000 000000000112344555555544431 112211
Q ss_pred hccccCCe-eccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccc
Q 043235 382 GQLQNIRA-LNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSG 447 (515)
Q Consensus 382 ~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 447 (515)
..++-+.+ ..-|+..++ .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+++-
T Consensus 419 ~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 419 PPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS 478 (498)
T ss_pred CCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence 12333333 334455554 5554442 35568999999999 67776 66778 89999999874
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-26 Score=251.20 Aligned_cols=335 Identities=21% Similarity=0.251 Sum_probs=164.8
Q ss_pred CCCCCCccEEeCcCCc------CCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHH
Q 043235 7 NAKYDKLRHLDISSNN------FSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPI 80 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~------l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~ 80 (515)
|..+++|+.|.+..+. +...+|..+....++|+.|.+.++.++ ..|..| ...+|+.|++++|++. .++..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence 4455555555554432 112344444443344555555555555 444444 3455555555555555 454443
Q ss_pred HhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc
Q 043235 81 VSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS 160 (515)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 160 (515)
..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+
T Consensus 631 -~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 631 -HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred -ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 445555555555543222332 34555555555555554434455555555555555555543333444433 455555
Q ss_pred EEEccCccccccccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCcee-------eeccccccCCCCccEEe
Q 043235 161 VLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIK-------GLIPIALLRSSTLLTLD 230 (515)
Q Consensus 161 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~-------~~~~~~~~~~~~L~~L~ 230 (515)
.|++++|.....+|.. ..+|+.|++++|.+..++ .+++|++|.+.++... ...+..+...++|+.|+
T Consensus 708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred EEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 5555555433333321 234555555555554443 2344444444442211 11111112233455555
Q ss_pred ccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCccc
Q 043235 231 LRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFF 310 (515)
Q Consensus 231 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~ 310 (515)
+++|.....+|..+..+++|+.|++++|...+.+|... .+++|+.|++++|.....+|.
T Consensus 785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-------------------- 843 (1153)
T PLN03210 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-------------------- 843 (1153)
T ss_pred CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--------------------
Confidence 55554444455555555555555555543222334333 345555555555432211111
Q ss_pred ccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCee
Q 043235 311 YANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAL 390 (515)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 390 (515)
...+|++|+|++|.++ .+|..+..+++|+.|
T Consensus 844 ------------------------------------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L 874 (1153)
T PLN03210 844 ------------------------------------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFL 874 (1153)
T ss_pred ------------------------------------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEE
Confidence 1345666777777666 556666667777777
Q ss_pred ccCCccccccChhhhcCccCCCeeeCCCCc
Q 043235 391 NLSNNLLSGAIPESFSNLKMIESLDLSRNK 420 (515)
Q Consensus 391 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 420 (515)
+|++|.--..+|..+..+++|+.+++++|.
T Consensus 875 ~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 875 DMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 776643322455556666667777766664
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=242.39 Aligned_cols=341 Identities=22% Similarity=0.238 Sum_probs=263.6
Q ss_pred CchhHHhcccCCcEEECcCCc------ccccCCccccCCC-CCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccc
Q 043235 27 LPENLGIIFQKLIYLDMSKNN------FEGNIPYSVGEMK-ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYG 99 (515)
Q Consensus 27 ~p~~~~~~~~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~ 99 (515)
+....+..+++|+.|.+..+. +....|..|..++ +|+.|.+.++.+. .+|..+ ...+|++|++.+|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-
Confidence 445555668999999997653 3334677777764 6999999999998 888765 4789999999999987
Q ss_pred cCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccC
Q 043235 100 QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNN 179 (515)
Q Consensus 100 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 179 (515)
..+..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ .
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 4567788899999999998765445554 7788999999999987666888899999999999999976555667655 7
Q ss_pred CCCCcEEeCCCCCC-CCcC-CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC-------CcCchhhhcCCCc
Q 043235 180 LKSLEFIDLSENSL-ISLS-NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF-------GRIPHQINERSNL 250 (515)
Q Consensus 180 l~~L~~L~L~~n~l-~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~-------~~~~~~~~~l~~L 250 (515)
+++|+.|++++|.. ..++ ...+|+.|++++|.+..+ |..+ .+++|++|++.++... ...+..+...++|
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCCCEEeCCCCCCccccccccCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 88999999999853 3343 346789999999998765 4333 5678888888774421 1122223345789
Q ss_pred CEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccC
Q 043235 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQL 330 (515)
Q Consensus 251 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (515)
+.|+|++|.....+|..+..+++|+.|++++|...+.+|...
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------------------------------- 822 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------------------------------- 822 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--------------------------------------
Confidence 999999998777888889999999999999886544444321
Q ss_pred ccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccC
Q 043235 331 PVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKM 410 (515)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 410 (515)
.+++|+.|++++|.....+|.. .++|++|+|++|.++ .+|.++..+++
T Consensus 823 ----------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~ 870 (1153)
T PLN03210 823 ----------------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSN 870 (1153)
T ss_pred ----------------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCC
Confidence 2678999999998665455543 368999999999998 78999999999
Q ss_pred CCeeeCCCCcccccCCccccCCCCCCEEecccCcc
Q 043235 411 IESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNL 445 (515)
Q Consensus 411 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 445 (515)
|+.|+|++|+-...+|..+..++.|+.+++++|.-
T Consensus 871 L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 871 LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 99999999655446888889999999999999863
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-23 Score=214.21 Aligned_cols=133 Identities=24% Similarity=0.293 Sum_probs=62.5
Q ss_pred CCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcc
Q 043235 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVS 141 (515)
Q Consensus 62 L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 141 (515)
-..|+++++.++ .+|..+. .+|+.|++++|+++. +|. .+++|++|++++|+++. +|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 445566666665 5555442 345556666665553 222 13455555555555552 2321 2445555555
Q ss_pred cCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCC-CCcccEEEcccCceee
Q 043235 142 NNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSN-LSFVKHIYLQNNAIKG 214 (515)
Q Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~-l~~L~~L~L~~n~i~~ 214 (515)
+|.++ .+|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++..++. ...|+.|++++|.+++
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS 336 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCCCcccccccccccCcccc
Confidence 55554 22321 1345555555555552 232 12345555555555544432 1234444444444443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-23 Score=213.04 Aligned_cols=172 Identities=24% Similarity=0.246 Sum_probs=85.1
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 117 (515)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. .+++|++|++++|+++.. |.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCc---ccccceeecc
Confidence 345555555555 3444443 24555555555555 4543 134555555555555532 221 2455556666
Q ss_pred cCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC
Q 043235 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS 197 (515)
Q Consensus 118 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~ 197 (515)
+|.++. +|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|++.+ +|.. ..+|+.|++++|++..++
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccccc
Confidence 665542 2221 234556666666665 23331 3456666666666663 2321 234566667777666555
Q ss_pred CCC-cccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 198 NLS-FVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 198 ~l~-~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
.++ .|+.|++++|+++++ |.. ..+|+.|++++|++.
T Consensus 339 ~lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 339 TLPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT 375 (788)
T ss_pred ccccccceEecCCCccCCC-CCC---Ccccceehhhccccc
Confidence 332 355555555555443 211 124445555555554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-21 Score=199.87 Aligned_cols=180 Identities=22% Similarity=0.318 Sum_probs=108.5
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
.+.+.|+++++.++ .+|..+ .++|+.|+|++|+++ .+|..+. .+|++|++++|+++ .+|..+ ..+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEE
Confidence 45677888887777 677655 357788888888777 4555443 47788888888777 677654 2467777
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 78777776 3444442 46777777777776 3454432 467777777777763 343332 35666666666666
Q ss_pred ccccccccCCCCCcEEeCCCCCCCCcCC--CCcccEEEcccCcee
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLISLSN--LSFVKHIYLQNNAIK 213 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~~l~~--l~~L~~L~L~~n~i~ 213 (515)
. +|..+ .++|+.|++++|.+..++. .++|+.|++++|+++
T Consensus 318 ~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 318 A-LPETL--PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQIT 359 (754)
T ss_pred c-CCccc--cccceeccccCCccccCChhhcCcccEEECCCCCCC
Confidence 3 33322 2455566666655544431 133444444444443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-21 Score=198.11 Aligned_cols=246 Identities=24% Similarity=0.373 Sum_probs=126.0
Q ss_pred CCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEc
Q 043235 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNV 140 (515)
Q Consensus 61 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 140 (515)
+...|+++++.++ .+|..+ .++|+.|++++|+++. +|..+. .+|++|++++|+++ .+|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 3455555555555 555433 2345555555555553 233222 35555555555555 2333332 24555555
Q ss_pred ccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccc
Q 043235 141 SNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIAL 220 (515)
Q Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~ 220 (515)
++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|++..++ ..+
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP--------------------~~l 302 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLP--------------------AHL 302 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCc--------------------ccc
Confidence 555555 3343332 34555555555555 2333222 24444444444443332 111
Q ss_pred cCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCccccc
Q 043235 221 LRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE 300 (515)
Q Consensus 221 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~ 300 (515)
. ++|+.|++++|+++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+
T Consensus 303 p--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-------- 365 (754)
T PRK15370 303 P--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-------- 365 (754)
T ss_pred h--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--------
Confidence 1 245666666666653 33322 2456666666666663 444332 56777777777664 222211
Q ss_pred ccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccc
Q 043235 301 ATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWK 380 (515)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 380 (515)
.+.|++|++++|+++ .+|..
T Consensus 366 -----------------------------------------------------------p~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 366 -----------------------------------------------------------PPTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred -----------------------------------------------------------cCCcCEEECCCCcCC-CCCHh
Confidence 235666777777776 44544
Q ss_pred hhccccCCeeccCCccccccChhh----hcCccCCCeeeCCCCccc
Q 043235 381 IGQLQNIRALNLSNNLLSGAIPES----FSNLKMIESLDLSRNKLS 422 (515)
Q Consensus 381 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~ 422 (515)
+. ..|+.|++++|++. .+|.. +..++.+..|++.+|.++
T Consensus 386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 43 35777777777776 33433 333466777777777776
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-20 Score=182.08 Aligned_cols=269 Identities=23% Similarity=0.262 Sum_probs=173.2
Q ss_pred EEeCcCCcCCCCCchhHHhcccCCcEEECcCCccccc----CCccccCCCCCCEEECcCCcCcccCch------HHHhCC
Q 043235 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGN----IPYSVGEMKELTILDLSRNNFTGKLPR------PIVSSC 84 (515)
Q Consensus 15 ~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~l~~------~~~~~l 84 (515)
.|+|..+.+++.--..++..+.+|++|+++++.++.. ++..+...+++++|+++++.+. ..+. ..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG-RIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC-CcchHHHHHHHHHHhc
Confidence 5778888886433334444467899999999888532 4455667788899999888775 2121 234567
Q ss_pred CCCCEEEccCccccccCCccccCCCC---CCEEEcccCCCCC----cCChhhhCC-CCCcEEEcccCcCCCC----cChh
Q 043235 85 LSLDWLDLSNNNFYGQLFPNYMNLTD---LGSLYLDNNHFSG----KMTDGLLSS-TLLRVLNVSNNMLSGD----IPHW 152 (515)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~l~~---L~~L~L~~n~i~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~ 152 (515)
++|++|++++|.+....+..+..+.+ |++|++++|++.+ .....+..+ ++|+.|++++|.+++. .+..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 78888888888886555555555554 8888888888763 222344555 7888888888888732 2334
Q ss_pred ccCCCCccEEEccCcccccc----ccccccCCCCCcEEeCCCCCCCC---------cCCCCcccEEEcccCceeeecccc
Q 043235 153 IGNFSVLSVLLMSENYLQGN----IPVQLNNLKSLEFIDLSENSLIS---------LSNLSFVKHIYLQNNAIKGLIPIA 219 (515)
Q Consensus 153 ~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~---------l~~l~~L~~L~L~~n~i~~~~~~~ 219 (515)
+..+++|++|++++|.+.+. ++..+...++|+.|++++|.+.. +..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 56667888888888887732 23344556788888888887642 234566777777777766432222
Q ss_pred cc-----CCCCccEEeccCCccCC----cCchhhhcCCCcCEEEccCccCCCC----CCccccCC-CCCCEEECCCCcC
Q 043235 220 LL-----RSSTLLTLDLRDNKLFG----RIPHQINERSNLHVLLLRGNYLQGR----IPNQLCQL-RKLSIMDLSRNRL 284 (515)
Q Consensus 220 ~~-----~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l-~~L~~L~L~~n~i 284 (515)
+. ..+.|++|++++|.++. .+...+..+++|+.+++++|.+++. ....+... +.|+++++.+|++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 21 23577777777777752 1233445556777777777777743 23333344 5677777776653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-20 Score=180.50 Aligned_cols=182 Identities=23% Similarity=0.198 Sum_probs=86.8
Q ss_pred EEEccCcccc-ccCCccccCCCCCCEEEcccCCCCCc----CChhhhCCCCCcEEEcccCcCCC------CcChhccCCC
Q 043235 89 WLDLSNNNFY-GQLFPNYMNLTDLGSLYLDNNHFSGK----MTDGLLSSTLLRVLNVSNNMLSG------DIPHWIGNFS 157 (515)
Q Consensus 89 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~ 157 (515)
.|+|..+.++ ......+..+.+|++|+++++.++.. ++..+...+.+++++++++.+.+ ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666665 22233345566677777777776432 23344455667777777766552 1123344455
Q ss_pred CccEEEccCccccccccccccCCCC---CcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCC-CCccEEeccC
Q 043235 158 VLSVLLMSENYLQGNIPVQLNNLKS---LEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRS-STLLTLDLRD 233 (515)
Q Consensus 158 ~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~-~~L~~L~Ls~ 233 (515)
+|+.|++++|.+.+..+..+..+.+ |+.|++++|++.... ...+...+..+ ++|+.|++++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~---------------~~~l~~~l~~~~~~L~~L~L~~ 146 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG---------------LRLLAKGLKDLPPALEKLVLGR 146 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH---------------HHHHHHHHHhCCCCceEEEcCC
Confidence 5666666655554333333332222 444444444332100 00111223333 4555555555
Q ss_pred CccCCc----CchhhhcCCCcCEEEccCccCCCC----CCccccCCCCCCEEECCCCcCc
Q 043235 234 NKLFGR----IPHQINERSNLHVLLLRGNYLQGR----IPNQLCQLRKLSIMDLSRNRLN 285 (515)
Q Consensus 234 n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~ 285 (515)
|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 147 n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred CcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 555421 222334445555555555555521 1122333445555555555553
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-20 Score=153.24 Aligned_cols=179 Identities=27% Similarity=0.420 Sum_probs=124.3
Q ss_pred CCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccc
Q 043235 222 RSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREA 301 (515)
Q Consensus 222 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~ 301 (515)
.+..++.|.+|+|+++ .+|..+..+.+|+.|++.+|+|+ ..|..++.++.|+.|++.-|++. ..|..|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs------- 100 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS------- 100 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-------
Confidence 3445666666666665 44555666667777777777766 55666666777777777666664 44554443
Q ss_pred cCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcc-ccccc
Q 043235 302 TDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSG-EIPWK 380 (515)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~ 380 (515)
++.|+.|||++|++.+ ..|..
T Consensus 101 ----------------------------------------------------------~p~levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 101 ----------------------------------------------------------FPALEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred ----------------------------------------------------------CchhhhhhccccccccccCCcc
Confidence 4556667777766653 45777
Q ss_pred hhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccC---C
Q 043235 381 IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFA---T 457 (515)
Q Consensus 381 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~---~ 457 (515)
|..++.|+.|+|++|.+. .+|..++++++|+.|.++.|.+. .+|..+..++.|+.|++.+|.++-..|+.+++. .
T Consensus 123 ff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~ 200 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGN 200 (264)
T ss_pred hhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhh
Confidence 777888888888888887 77777888888888888888887 778888888888888888888887777644332 2
Q ss_pred CCcccccCCCCCC
Q 043235 458 FDDCSYKGNSALC 470 (515)
Q Consensus 458 l~~~~~~gn~~~c 470 (515)
-.....+.|||.-
T Consensus 201 k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 201 KQVMRMEENPWVN 213 (264)
T ss_pred HHHHhhhhCCCCC
Confidence 2344667788864
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-19 Score=146.09 Aligned_cols=157 Identities=26% Similarity=0.431 Sum_probs=121.9
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+.+++.|.|++|+++ ..|..+..+.+|+.|++++|+|+ .+|..+ +.+++|++|+++-|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 467777888888887 56667778888888888888887 778776 67888888888888775 667788888888888
Q ss_pred EcccCCCC-CcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCC
Q 043235 115 YLDNNHFS-GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 115 ~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 193 (515)
|+.+|.+. ...|..|..+..|+.|+++.|.+. .+|..++++++|+.|.++.|.+. ..|..++.+++|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 88887775 346777777777888888888887 67777888888888888888877 6777788888888888888887
Q ss_pred CCcC
Q 043235 194 ISLS 197 (515)
Q Consensus 194 ~~l~ 197 (515)
+.++
T Consensus 186 ~vlp 189 (264)
T KOG0617|consen 186 TVLP 189 (264)
T ss_pred eecC
Confidence 6554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-13 Score=139.56 Aligned_cols=118 Identities=34% Similarity=0.599 Sum_probs=107.0
Q ss_pred cCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecc
Q 043235 362 YMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVS 441 (515)
Q Consensus 362 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 441 (515)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCc--ccCCCCcccccCCCCCCCCccCCCCC
Q 043235 442 YNNLSGPIPDKE--QFATFDDCSYKGNSALCGSMIKRKCS 479 (515)
Q Consensus 442 ~N~l~~~~p~~~--~~~~l~~~~~~gn~~~c~~~l~~~~~ 479 (515)
+|+++|.+|... ....+..+.+.||+++|+.+-...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999832 23455678899999999877655664
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-14 Score=137.51 Aligned_cols=192 Identities=30% Similarity=0.381 Sum_probs=164.6
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
.+......|++.|++. .+|..+.. |..|+.+.|.+|.+. .+|.+++++..|.+|||+.|+++ .+|..++ .+ -|+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLK 146 (722)
T ss_pred cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-cce
Confidence 4556678899999998 99998877 788999999999999 79999999999999999999999 8998873 33 599
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcc
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (515)
.|-+++|+++ .+|..++.+..|..|+.+.|.+. ..|..+..+.+|+.|.+..|++. .+|..+..++ |..||++.|+
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNK 222 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCc
Confidence 9999999998 67888899999999999999998 67778899999999999999998 5677677554 9999999999
Q ss_pred ccccccccccCCCCCcEEeCCCCCCCCcC-------CCCcccEEEcccCc
Q 043235 169 LQGNIPVQLNNLKSLEFIDLSENSLISLS-------NLSFVKHIYLQNNA 211 (515)
Q Consensus 169 l~~~~~~~l~~l~~L~~L~L~~n~l~~l~-------~l~~L~~L~L~~n~ 211 (515)
+. .+|..|.+++.|++|.|.+|.+.+-+ ...-.|+|+.+-++
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 99 78999999999999999999996543 22224666666663
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-12 Score=129.26 Aligned_cols=194 Identities=34% Similarity=0.396 Sum_probs=107.6
Q ss_pred EEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC-CCCEEEccCccccccCCccccCCCCCCEEEccc
Q 043235 40 YLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL-SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118 (515)
Q Consensus 40 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 118 (515)
.+++..+.+. .....+..++.++.|++.+|.++ .++... .... +|+.|++++|.+.. .+..++.+++|+.|++++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence 3555555553 22333444455666666666665 555543 2232 56666666666642 234455666666666666
Q ss_pred CCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCC---
Q 043235 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS--- 195 (515)
Q Consensus 119 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--- 195 (515)
|++. ..+......+.|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++..
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~ 249 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPE 249 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccc
Confidence 6665 33333335556666666666665 34444444445666666666433 234445556666666666666532
Q ss_pred -cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCch
Q 043235 196 -LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242 (515)
Q Consensus 196 -l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 242 (515)
+..++.+++|++++|.++.+.. ++...+++.|++++|.+....+.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 2355556666666666666533 66666777777777776654443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-13 Score=132.84 Aligned_cols=189 Identities=32% Similarity=0.414 Sum_probs=125.3
Q ss_pred EEECcCCcccccCCc-cc-cCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc
Q 043235 40 YLDMSKNNFEGNIPY-SV-GEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 40 ~L~L~~n~i~~~~~~-~~-~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 117 (515)
+|.|++-+++. .|. +. ..+.--...|++.|++. .+|..+ ..+..|+.+.|++|.+. .+|..+.++..|.+++++
T Consensus 54 ~l~Ls~rrlk~-fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 54 RLLLSGRRLKE-FPRGAASYDLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLS 129 (722)
T ss_pred ccccccchhhc-CCCccccccccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhc
Confidence 44555555552 221 11 33455567788888887 788776 55777888888888876 567778888888888888
Q ss_pred cCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC
Q 043235 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS 197 (515)
Q Consensus 118 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~ 197 (515)
.|+++ ..|..+..++ |+.|-+++|+++ .+|..++...+|..|+.+.|.+. .+|..++.+.+|+.|.+..|++..++
T Consensus 130 ~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp 205 (722)
T KOG0532|consen 130 SNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP 205 (722)
T ss_pred cchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCC
Confidence 88887 6677777766 788888888887 66777777778888888888877 56666777777777777777765443
Q ss_pred -C--CCcccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 198 -N--LSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 198 -~--l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
. .-.|..||++.|++..+ |..|..|..|++|-|.+|.+.
T Consensus 206 ~El~~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 206 EELCSLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHhCCceeeeecccCceeec-chhhhhhhhheeeeeccCCCC
Confidence 1 11244455555555432 444555555555555555553
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-12 Score=125.98 Aligned_cols=198 Identities=32% Similarity=0.463 Sum_probs=156.2
Q ss_pred EEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCC-CCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK-ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 15 ~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
.++++.+.+. .....+.. ++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+ ..+++|+.|+++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~-~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLR-SNISELLE-LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccc-cCchhhhc-ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhh-hccccccccccC
Confidence 5788888775 33334444 468999999999999 5676677774 9999999999998 776554 779999999999
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccc
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI 173 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (515)
+|+++. .+......++|+.|++++|+++ .+|........|+++.+++|.+. ..+..+.++.++..+.+.+|++. ..
T Consensus 172 ~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 172 FNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred Cchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 999974 4444558899999999999998 55655555667999999999654 45667888889999999999887 34
Q ss_pred cccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeecccccc
Q 043235 174 PVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALL 221 (515)
Q Consensus 174 ~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~ 221 (515)
+..++.++.++.|++++|.+..+. ....++.|++++|.+....+....
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred cchhccccccceeccccccccccccccccCccCEEeccCccccccchhhhc
Confidence 667888889999999999997665 678899999999998877665443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-12 Score=110.04 Aligned_cols=104 Identities=37% Similarity=0.454 Sum_probs=26.3
Q ss_pred CCcEEECcCCcccccCCcccc-CCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccc-cCCCCCCEE
Q 043235 37 KLIYLDMSKNNFEGNIPYSVG-EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY-MNLTDLGSL 114 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L 114 (515)
++++|+|++|.|+. + +.++ .+.+|+.|++++|.|+ .++. +..++.|++|++++|+|+... ..+ ..+++|++|
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-C-HHHHHH-TT--EE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccc-cchHHhCCcCCEE
Confidence 45666666665552 2 2233 3555666666666655 4442 344555666666666555322 222 245555555
Q ss_pred EcccCCCCCc-CChhhhCCCCCcEEEcccCcCC
Q 043235 115 YLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 115 ~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
++++|+|... ....+..+++|+.|++.+|+++
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555555422 1133445555555555555554
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-12 Score=107.68 Aligned_cols=129 Identities=28% Similarity=0.316 Sum_probs=54.7
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
.+..+++.|+|.+|.|+ .+. .+...+.+|+.|++++|.|+.. +.+..+++|++|++++|.|+ .+...+...+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 45667899999999998 554 4554468999999999999943 35888999999999999999 7876665679999
Q ss_pred CEEEccCccccccC-CccccCCCCCCEEEcccCCCCCcCC---hhhhCCCCCcEEEcc
Q 043235 88 DWLDLSNNNFYGQL-FPNYMNLTDLGSLYLDNNHFSGKMT---DGLLSSTLLRVLNVS 141 (515)
Q Consensus 88 ~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~ 141 (515)
++|++++|+|.... ...+..+++|++|++.+|.++.... ..+..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99999999997532 2457789999999999999973311 245667888888754
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.1e-13 Score=123.49 Aligned_cols=201 Identities=23% Similarity=0.192 Sum_probs=102.7
Q ss_pred ccCCcEEECcCCcccccCC--ccccCCCCCCEEECcCCcCcccCc--hHHHhCCCCCCEEEccCccccccCCcc-ccCCC
Q 043235 35 FQKLIYLDMSKNNFEGNIP--YSVGEMKELTILDLSRNNFTGKLP--RPIVSSCLSLDWLDLSNNNFYGQLFPN-YMNLT 109 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~l~~~l~--~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~ 109 (515)
+++|+.+.|.++.+. ..+ .....|++++.|||++|-+. ... ..+...+++|+.|+++.|++....... -..++
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 455666666666555 222 24455666666666666544 211 233345666666666666654211111 12345
Q ss_pred CCCEEEcccCCCCCcCCh-hhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccc-cccccCCCCCcEEe
Q 043235 110 DLGSLYLDNNHFSGKMTD-GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI-PVQLNNLKSLEFID 187 (515)
Q Consensus 110 ~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~ 187 (515)
.|+.|.++.|.++..... ....+++|+.|++..|............+..|++|+|++|.+.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 566666666666522211 2234566666666666322122222333455666666666655221 02245566666666
Q ss_pred CCCCCCCCcC-----------CCCcccEEEcccCceeeec-cccccCCCCccEEeccCCccC
Q 043235 188 LSENSLISLS-----------NLSFVKHIYLQNNAIKGLI-PIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 188 L~~n~l~~l~-----------~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
++.+.++++. .+++|++|++..|+|.... -..+..+++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6666664432 3456777777777764321 122334556667777777765
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-12 Score=120.88 Aligned_cols=204 Identities=22% Similarity=0.222 Sum_probs=126.7
Q ss_pred cCCCCCCEEECcCCcCcccCch-HHHhCCCCCCEEEccCcccccc--CCccccCCCCCCEEEcccCCCCCcCCh-hhhCC
Q 043235 57 GEMKELTILDLSRNNFTGKLPR-PIVSSCLSLDWLDLSNNNFYGQ--LFPNYMNLTDLGSLYLDNNHFSGKMTD-GLLSS 132 (515)
Q Consensus 57 ~~l~~L~~L~L~~n~l~~~l~~-~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l 132 (515)
+++.+|+...|.++.+. ..+. .....|++++.|||++|-+... .......+++|+.|+++.|++...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46788999999988876 4442 3456789999999999877531 122345788999999999987632211 11256
Q ss_pred CCCcEEEcccCcCCCCcCh-hccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC------CCCcccEE
Q 043235 133 TLLRVLNVSNNMLSGDIPH-WIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS------NLSFVKHI 205 (515)
Q Consensus 133 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~------~l~~L~~L 205 (515)
++|+.|.++.|.++...-. ....+++|+.|++..|...........-+..|+.|||++|.+..+. .++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7788888888888743222 2356788888888888533233334455677888888888875543 56667777
Q ss_pred EcccCceeeecccc------ccCCCCccEEeccCCccCCc-CchhhhcCCCcCEEEccCccCC
Q 043235 206 YLQNNAIKGLIPIA------LLRSSTLLTLDLRDNKLFGR-IPHQINERSNLHVLLLRGNYLQ 261 (515)
Q Consensus 206 ~L~~n~i~~~~~~~------~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~ 261 (515)
+++.+.++++.-.. ...+++|++|+++.|+|... ....+..+++|+.|.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 77777766542111 13345566666666655311 1122333444555555555444
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-12 Score=116.42 Aligned_cols=241 Identities=25% Similarity=0.312 Sum_probs=115.0
Q ss_pred CCCCccEEeCcCCcCCCC----CchhHHhcccCCcEEECcCC---cccccCC-------ccccCCCCCCEEECcCCcCcc
Q 043235 9 KYDKLRHLDISSNNFSGK----LPENLGIIFQKLIYLDMSKN---NFEGNIP-------YSVGEMKELTILDLSRNNFTG 74 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~----~p~~~~~~~~~L~~L~L~~n---~i~~~~~-------~~~~~l~~L~~L~L~~n~l~~ 74 (515)
.+..++.+++|+|.+... +...+.. -++|+..+++.- +....+| .++..+++|++|+||+|.+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~-~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLAS-KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhh-cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 455667777777766422 1222222 345666666542 1111222 233455667777777776542
Q ss_pred cCch---HHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCc--
Q 043235 75 KLPR---PIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDI-- 149 (515)
Q Consensus 75 ~l~~---~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 149 (515)
.-+. .+++++..|++|.|.+|.+.......++. .|..|. .......-+.|+++...+|++....
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccccHH
Confidence 2222 23455666666666666654211111110 000000 0000112234444444444443211
Q ss_pred --ChhccCCCCccEEEccCcccccc----ccccccCCCCCcEEeCCCCCCC---------CcCCCCcccEEEcccCceee
Q 043235 150 --PHWIGNFSVLSVLLMSENYLQGN----IPVQLNNLKSLEFIDLSENSLI---------SLSNLSFVKHIYLQNNAIKG 214 (515)
Q Consensus 150 --~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~---------~l~~l~~L~~L~L~~n~i~~ 214 (515)
...|...+.|+.+.+..|.|... ....+..+++|+.|||.+|-++ .++..++|+.|++++|.+..
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 12233344455555555544311 1223445555555555555542 22344555666666665544
Q ss_pred eccccc-----cCCCCccEEeccCCccCCc----CchhhhcCCCcCEEEccCccCC
Q 043235 215 LIPIAL-----LRSSTLLTLDLRDNKLFGR----IPHQINERSNLHVLLLRGNYLQ 261 (515)
Q Consensus 215 ~~~~~~-----~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~ 261 (515)
-...++ ...+.|+.|.+.+|.|+.. +...+...+.|..|+|++|.+.
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 322222 2356788888888887632 2233445678888888888884
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.7e-12 Score=114.64 Aligned_cols=240 Identities=26% Similarity=0.293 Sum_probs=152.9
Q ss_pred ccCCcEEECcCCcccc----cCCccccCCCCCCEEECcCCc---CcccCchH------HHhCCCCCCEEEccCccccccC
Q 043235 35 FQKLIYLDMSKNNFEG----NIPYSVGEMKELTILDLSRNN---FTGKLPRP------IVSSCLSLDWLDLSNNNFYGQL 101 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~---l~~~l~~~------~~~~l~~L~~L~L~~n~i~~~~ 101 (515)
+..+++++|++|.+.. .+...+.+.++|+..++++-- ....+|.. .+.++++|++||||+|-+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4678888888887763 223445666788888877542 11133332 1234556666666666554322
Q ss_pred Ccc----ccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccc----
Q 043235 102 FPN----YMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI---- 173 (515)
Q Consensus 102 ~~~----~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---- 173 (515)
+.. +..+..|++|+|.+|.+.-..-..++. .|..|. .+ .....-+.|+.+...+|++....
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH-------hccCCCcceEEEEeeccccccccHHHH
Confidence 222 233445555555555443111111110 112211 11 12334578999999999987432
Q ss_pred cccccCCCCCcEEeCCCCCCC---------CcCCCCcccEEEcccCceeee----ccccccCCCCccEEeccCCccCCcC
Q 043235 174 PVQLNNLKSLEFIDLSENSLI---------SLSNLSFVKHIYLQNNAIKGL----IPIALLRSSTLLTLDLRDNKLFGRI 240 (515)
Q Consensus 174 ~~~l~~l~~L~~L~L~~n~l~---------~l~~l~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~Ls~n~i~~~~ 240 (515)
...|...+.|+.+.+..|.|. .+..+++|+.|+|++|-++.. ....+..+++|+.|++++|.+....
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 344667789999999999983 234789999999999998753 3445677889999999999997654
Q ss_pred chhh-----hcCCCcCEEEccCccCCCCC----CccccCCCCCCEEECCCCcCc
Q 043235 241 PHQI-----NERSNLHVLLLRGNYLQGRI----PNQLCQLRKLSIMDLSRNRLN 285 (515)
Q Consensus 241 ~~~~-----~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~ 285 (515)
...| ...++|+.|.+.+|.|+... .......+.|..|+|++|++.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 4443 23689999999999998422 223445789999999999994
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-12 Score=111.85 Aligned_cols=128 Identities=23% Similarity=0.223 Sum_probs=84.1
Q ss_pred CCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEecc
Q 043235 156 FSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232 (515)
Q Consensus 156 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls 232 (515)
...|+++++++|.|+ .+..+..-.+.++.|++++|.+..+. .+++|..|+|++|.++.. ..+-..+-++++|.|+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeehh
Confidence 345666666666666 44455555666666666666664443 455666677777766653 3344456677888888
Q ss_pred CCccCCcCchhhhcCCCcCEEEccCccCCCCC-CccccCCCCCCEEECCCCcCcCC
Q 043235 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQGRI-PNQLCQLRKLSIMDLSRNRLNGP 287 (515)
Q Consensus 233 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~ 287 (515)
+|.|. ....+.++-+|..||+++|+|.... ...+++++.|+++.|.+|++.+.
T Consensus 361 ~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88773 3345677778888888888877322 24567788888888888888643
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-12 Score=126.67 Aligned_cols=264 Identities=25% Similarity=0.244 Sum_probs=163.4
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
.+.++.++...+.+. ..... ...+..++.++++.|.+. ..-..+..+.+|+.|++.+|+|. .+... ...+++|++
T Consensus 48 ~~~~~~~~~~~~~~~-~~~~~-~~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~ 122 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDG-SDEDL-VESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQV 122 (414)
T ss_pred cchhhhhcchhcccc-chhhh-HHHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccc-hhhhhcchh
Confidence 344455555555443 11111 112456777777777777 33445677788888888888887 55432 255778888
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcC-hhccCCCCccEEEccCcc
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIP-HWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 168 (515)
|++++|.|+.. ..+..++.|+.|++++|.|+.. ..+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.
T Consensus 123 L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 123 LDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred eeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 88888888653 4566667788888888887632 345557778888888887774433 1 4667777777888777
Q ss_pred ccccccccccCCCCCcEEeCCCCCCCCcCCCCc-----ccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchh
Q 043235 169 LQGNIPVQLNNLKSLEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 243 (515)
Q Consensus 169 l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~-----L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 243 (515)
+... ..+..+..+..+++..|.+..+..+.. |+.+++++|.+.... ..+..+..+..+++.+|++... ..
T Consensus 198 i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~ 272 (414)
T KOG0531|consen 198 IREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EG 272 (414)
T ss_pred hhcc--cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc--cc
Confidence 7632 334445555556777777766654332 677778877776542 4455666777778877777533 23
Q ss_pred hhcCCCcCEEEccCccCCCC---CCc-cccCCCCCCEEECCCCcCcCCC
Q 043235 244 INERSNLHVLLLRGNYLQGR---IPN-QLCQLRKLSIMDLSRNRLNGPI 288 (515)
Q Consensus 244 ~~~l~~L~~L~L~~n~i~~~---~~~-~~~~l~~L~~L~L~~n~i~~~~ 288 (515)
+.....+..+....|++... ... .....+.++.+.+..|++....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred ccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 44455566666666665521 111 1345567777777777765433
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.7e-12 Score=111.13 Aligned_cols=127 Identities=24% Similarity=0.258 Sum_probs=90.6
Q ss_pred CCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeC
Q 043235 109 TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDL 188 (515)
Q Consensus 109 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 188 (515)
..|+++||++|.|+ .+.+...-.+.++.|++++|.+..+ +.++.+++|+.|++++|.++ ....+-..+.+++.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 35777888888777 4555666677788888888877633 33677778888888888777 34444556777788888
Q ss_pred CCCCCCCcC---CCCcccEEEcccCceeeec-cccccCCCCccEEeccCCccCCc
Q 043235 189 SENSLISLS---NLSFVKHIYLQNNAIKGLI-PIALLRSSTLLTLDLRDNKLFGR 239 (515)
Q Consensus 189 ~~n~l~~l~---~l~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~Ls~n~i~~~ 239 (515)
++|.+.+++ .+-+|..|++++|+|.... ...+++++.|+.+.|.+|.+.+.
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 888776665 4556777888888876542 24677888899999999988643
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-12 Score=125.06 Aligned_cols=222 Identities=26% Similarity=0.315 Sum_probs=119.0
Q ss_pred ccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEE
Q 043235 153 IGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTL 229 (515)
Q Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 229 (515)
+..+.+++.|++.+|.+... ...+..+++|+.|++++|.|..+. .++.|+.|++++|.|+.+ ..+..+..|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccchhhccchhhheeccCcchhc--cCCccchhhhcc
Confidence 34444444455555444422 111344555555555555554333 333355555555555543 233335566666
Q ss_pred eccCCccCCcCc-hhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCc
Q 043235 230 DLRDNKLFGRIP-HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSE 308 (515)
Q Consensus 230 ~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~ 308 (515)
++++|+++..-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++..-+.
T Consensus 168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l------------------ 226 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGL------------------ 226 (414)
T ss_pred cCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCc------------------
Confidence 666666653332 1 34555666666666666522 2333344444445566655421110
Q ss_pred ccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccc--cCCEEEcCCCcCccccccchhcccc
Q 043235 309 FFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN--YMAGLDLSGNEFSGEIPWKIGQLQN 386 (515)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~ 386 (515)
..+. +|+.+++++|++. ..+..+..+..
T Consensus 227 -------------------------------------------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~ 256 (414)
T KOG0531|consen 227 -------------------------------------------------NELVMLHLRELYLSGNRIS-RSPEGLENLKN 256 (414)
T ss_pred -------------------------------------------------ccchhHHHHHHhcccCccc-ccccccccccc
Confidence 0011 3667777777777 33355666777
Q ss_pred CCeeccCCccccccChhhhcCccCCCeeeCCCCccccc---CCcc-ccCCCCCCEEecccCcccccCC
Q 043235 387 IRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ---IPPQ-LTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 387 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
+..|++++|++... ..+...+.+..+....|.+... .... ....+.++.+.+.+|+.....+
T Consensus 257 l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 257 LPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 88888888877632 2345566777777777776522 1121 4556777888888888776555
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-10 Score=120.44 Aligned_cols=92 Identities=35% Similarity=0.569 Sum_probs=84.1
Q ss_pred cccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCC-CCCCEE
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTEL-NFLSNF 438 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L 438 (515)
+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+|++|++++.+|..+..+ .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999988764 467889
Q ss_pred ecccCcccccCCC
Q 043235 439 NVSYNNLSGPIPD 451 (515)
Q Consensus 439 ~Ls~N~l~~~~p~ 451 (515)
++++|+..+-.|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999987665554
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-10 Score=124.15 Aligned_cols=129 Identities=26% Similarity=0.253 Sum_probs=84.2
Q ss_pred cCCcEEECcCCcccccCCccccCCCCCCEEECcCCc--CcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCE
Q 043235 36 QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN--FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGS 113 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 113 (515)
...+.+.+-+|.+. .++.+. .+++|++|-+.+|. +. .++..+|..++.|+.|||++|.--+..|..++.+.+|++
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 45666666666665 333332 23467777777775 44 666666777777777777766555566777777777777
Q ss_pred EEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcc
Q 043235 114 LYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 114 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (515)
|++++..+. .+|..+.+++.|.+|++..+.-...+|.....+++|++|.+..-.
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 777777776 567777777777777777665544445555557777777765543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-10 Score=123.54 Aligned_cols=270 Identities=22% Similarity=0.211 Sum_probs=142.8
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCc--ccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNN--FEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
.+...+.+.+.+|.+. .++.... .+.|++|-+..|. +.......|..++.|++|||++|.--+.+|..+ +.+.+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~ 596 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVH 596 (889)
T ss_pred chhheeEEEEeccchh-hccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhh
Confidence 3456677777777765 5555543 3467777777774 443444446677777777777664334677766 66777
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCC--CCcChhccCCCCccEEEc
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLS--GDIPHWIGNFSVLSVLLM 164 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l 164 (515)
||+|++++..+. ..|..++++..|.+|++..+.-....+.....+.+|++|.+...... ...-..+..+.+|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 777777777776 56677777777777777766654444555556777777777654421 111122334444444444
Q ss_pred cCccccccccccccCCCCCc----EEeCCCCCC----CCcCCCCcccEEEcccCceeeeccccccC------CCCccEEe
Q 043235 165 SENYLQGNIPVQLNNLKSLE----FIDLSENSL----ISLSNLSFVKHIYLQNNAIKGLIPIALLR------SSTLLTLD 230 (515)
Q Consensus 165 ~~n~l~~~~~~~l~~l~~L~----~L~L~~n~l----~~l~~l~~L~~L~L~~n~i~~~~~~~~~~------~~~L~~L~ 230 (515)
..... .+-..+..+..|. .+.+.++.. ..+..+..|+.|.+.++.+.......... ++++..+.
T Consensus 676 ~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~ 753 (889)
T KOG4658|consen 676 TISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS 753 (889)
T ss_pred ecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence 32221 0001111222221 222222221 23335666777777776665432222111 11222222
Q ss_pred ccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcC
Q 043235 231 LRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 231 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 286 (515)
..++... ..+.+....++|+.|.+..+...+.+......+..++.+.+..+.+.+
T Consensus 754 ~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 754 ILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 2222221 223333445677777777776665555555555666655555555543
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-10 Score=81.58 Aligned_cols=60 Identities=45% Similarity=0.639 Sum_probs=34.5
Q ss_pred cCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcc
Q 043235 386 NIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNL 445 (515)
Q Consensus 386 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 445 (515)
+|++|++++|+++.+.+++|.++++|++|++++|+++...+..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555544455555556666666666665555555556666666666665553
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-10 Score=80.79 Aligned_cols=61 Identities=41% Similarity=0.573 Sum_probs=57.1
Q ss_pred ccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcc
Q 043235 361 NYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKL 421 (515)
Q Consensus 361 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 421 (515)
|+|++|++++|+++...+..|.++++|++|++++|+++...+.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999977778899999999999999999988899999999999999999986
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-09 Score=96.49 Aligned_cols=157 Identities=23% Similarity=0.255 Sum_probs=74.4
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCc-CcccCchHHHhCCCCCCEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN-FTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~~~~l~~L~~L 90 (515)
+|++||||+..|+..--..+...+.+|+.|.|.++.+.+.+...+.+-.+|+.|+|+.+. ++..--.-++.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 356666666665532222333335566666666666665555555666666666666553 3322223345556666666
Q ss_pred EccCccccccCCcc-ccC-CCCCCEEEcccCCCC---CcCChhhhCCCCCcEEEcccCc-CCCCcChhccCCCCccEEEc
Q 043235 91 DLSNNNFYGQLFPN-YMN-LTDLGSLYLDNNHFS---GKMTDGLLSSTLLRVLNVSNNM-LSGDIPHWIGNFSVLSVLLM 164 (515)
Q Consensus 91 ~L~~n~i~~~~~~~-~~~-l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 164 (515)
+++.|.+....... +.. -++|+.|+++++.-. ..+..-...+++|.+|||+.|. ++...-..|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66666554322111 111 134555555554311 0011112345555556655543 22222223444555555555
Q ss_pred cCcc
Q 043235 165 SENY 168 (515)
Q Consensus 165 ~~n~ 168 (515)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 5554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-09 Score=107.86 Aligned_cols=122 Identities=30% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEcc
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (515)
.|...+.+.|.+. .....+.-++.|+.|+|++|+++.. +.+..+++|++|||+.|.+..+..-....+. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3445555566554 2334455556666666666666532 3556666666666666666532222222222 6666666
Q ss_pred CccccccccccccCCCCCcEEeCCCCCCCCcC------CCCcccEEEcccCcee
Q 043235 166 ENYLQGNIPVQLNNLKSLEFIDLSENSLISLS------NLSFVKHIYLQNNAIK 213 (515)
Q Consensus 166 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~------~l~~L~~L~L~~n~i~ 213 (515)
+|.++.. ..+.++.+|+.||+++|-+.... .+..|+.|+|.+|.+-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6666532 23556666666666666554333 3344566666666543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6e-08 Score=87.16 Aligned_cols=205 Identities=19% Similarity=0.118 Sum_probs=100.8
Q ss_pred cCCCCCCEEECcCCcCcccCc-hHHHhCCCCCCEEEccCccccc--cCCccccCCCCCCEEEcccCCCCCcCChhhhCCC
Q 043235 57 GEMKELTILDLSRNNFTGKLP-RPIVSSCLSLDWLDLSNNNFYG--QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSST 133 (515)
Q Consensus 57 ~~l~~L~~L~L~~n~l~~~l~-~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 133 (515)
....-++.|.+.++.|...-. ..+...++.++.+||.+|.|+. .+...+.++|.|++|+++.|++...+...-....
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 334455566666666652111 1223446677778888887752 2223356777777788877777633222113456
Q ss_pred CCcEEEcccCcCCCCc-ChhccCCCCccEEEccCccccccc--cccccCC-CCCcEEeCCCCCCCCc-------CCCCcc
Q 043235 134 LLRVLNVSNNMLSGDI-PHWIGNFSVLSVLLMSENYLQGNI--PVQLNNL-KSLEFIDLSENSLISL-------SNLSFV 202 (515)
Q Consensus 134 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l-~~L~~L~L~~n~l~~l-------~~l~~L 202 (515)
+|++|-|.+..+...- ...+..++.+++|+++.|.+.... ....... +.+++|....|....+ .-++++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 7777777776664322 223455667777777776433111 1111111 1334444433332111 123444
Q ss_pred cEEEcccCceeeec-cccccCCCCccEEeccCCccCCc-CchhhhcCCCcCEEEccCccCC
Q 043235 203 KHIYLQNNAIKGLI-PIALLRSSTLLTLDLRDNKLFGR-IPHQINERSNLHVLLLRGNYLQ 261 (515)
Q Consensus 203 ~~L~L~~n~i~~~~-~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~ 261 (515)
..+.+..|.+.... ...+..++.+-.|+|+.|+|..- ..+.+.++++|..|.++++.+.
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 44455555443321 12333344444555555555321 1234445555555555555554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-08 Score=92.00 Aligned_cols=222 Identities=21% Similarity=0.246 Sum_probs=129.3
Q ss_pred cEEeCcCCcCCCCCchhHHhc-ccCCcEEECcCCccccc-CCccccCC-CCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 14 RHLDISSNNFSGKLPENLGII-FQKLIYLDMSKNNFEGN-IPYSVGEM-KELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~-~~~L~~L~L~~n~i~~~-~~~~~~~l-~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
+.+|+.+-+|. |...... -....++.+....+... ..+.+.-. ..|++|||+...|+..--..+++.|.+|+.|
T Consensus 139 ~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~l 215 (419)
T KOG2120|consen 139 QTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNL 215 (419)
T ss_pred eeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhc
Confidence 56788877776 3333321 13456666665444321 11222222 3588899988888744445566778888888
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCC-CCCc-CChhhhCCCCCcEEEcccCcCCCCcChh-ccC-CCCccEEEccC
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNH-FSGK-MTDGLLSSTLLRVLNVSNNMLSGDIPHW-IGN-FSVLSVLLMSE 166 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~-l~~L~~L~l~~ 166 (515)
.+.++++.+.+...++.-.+|+.|+++.+. ++.. ..-.+.+++.|..|+++.|.+....... +.. -++|+.|++++
T Consensus 216 SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG 295 (419)
T KOG2120|consen 216 SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG 295 (419)
T ss_pred cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence 888888887777778888888888888764 3211 1123467788888888888765332211 111 14577777777
Q ss_pred cccc---ccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchh
Q 043235 167 NYLQ---GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 243 (515)
Q Consensus 167 n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 243 (515)
++-. ..+..-...+++|..|||++|-. ++......|.+++.|++|.++.|.. ++|..
T Consensus 296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~------------------l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~ 355 (419)
T KOG2120|consen 296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVM------------------LKNDCFQEFFKFNYLQHLSLSRCYD--IIPET 355 (419)
T ss_pred hHhhhhhhHHHHHHHhCCceeeeccccccc------------------cCchHHHHHHhcchheeeehhhhcC--CChHH
Confidence 6432 01111123566666666666532 2222233455566677777766653 44443
Q ss_pred ---hhcCCCcCEEEccCc
Q 043235 244 ---INERSNLHVLLLRGN 258 (515)
Q Consensus 244 ---~~~l~~L~~L~L~~n 258 (515)
+...++|.+|+..++
T Consensus 356 ~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 356 LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeeccCcceEEEEeccc
Confidence 344566777776654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.8e-09 Score=104.76 Aligned_cols=129 Identities=29% Similarity=0.365 Sum_probs=89.6
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
+..|.+.++++|.+. .+...+. .++.|+.|+|++|+++.. +.+..+++|++|||++|.+. .+|.--..++. |+.
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-hee
Confidence 556777788888876 5555554 367888888888888743 36778888888888888887 77753333444 888
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCc-CChhhhCCCCCcEEEcccCcCC
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
|.+++|.++. ...+.++.+|+.||+++|-+.+. ....++.+..|+.|.|.||.+-
T Consensus 237 L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888887764 35677788888888888876532 1223455667778888887764
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-07 Score=84.11 Aligned_cols=184 Identities=20% Similarity=0.192 Sum_probs=96.9
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhc---ccCCcEEECcCCcc---ccc-------CCccccCCCCCCEEECcCCcCcccC
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGII---FQKLIYLDMSKNNF---EGN-------IPYSVGEMKELTILDLSRNNFTGKL 76 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~---~~~L~~L~L~~n~i---~~~-------~~~~~~~l~~L~~L~L~~n~l~~~l 76 (515)
+..++.+|||+|.|...-...+... -.+|+..+++.-.. ... ...++-+|++|+..+||+|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5667778888887753322222221 24566666654311 111 1234556777888888887765444
Q ss_pred chH---HHhCCCCCCEEEccCccccccCCccc-------------cCCCCCCEEEcccCCCCCcCC----hhhhCCCCCc
Q 043235 77 PRP---IVSSCLSLDWLDLSNNNFYGQLFPNY-------------MNLTDLGSLYLDNNHFSGKMT----DGLLSSTLLR 136 (515)
Q Consensus 77 ~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~-------------~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~ 136 (515)
|.. +.++-+.|.+|.+++|.+.-..-..+ .+-|.|++.....|++..-.. ..+.....|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 432 33556677777777776632111111 234567777777776652211 1223334666
Q ss_pred EEEcccCcCCCCcC-----hhccCCCCccEEEccCcccccc----ccccccCCCCCcEEeCCCCCC
Q 043235 137 VLNVSNNMLSGDIP-----HWIGNFSVLSVLLMSENYLQGN----IPVQLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 137 ~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 193 (515)
++.+..|.|..... ..+..+.+|+.|++..|.++.. ....+..++.|+.|.+..|-+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 66666666542211 1123455666666666665522 223344455566666666654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-07 Score=83.78 Aligned_cols=203 Identities=21% Similarity=0.193 Sum_probs=109.6
Q ss_pred CcccEEEcccCceeee--ccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCC-CCCccccCCCCCCE
Q 043235 200 SFVKHIYLQNNAIKGL--IPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQG-RIPNQLCQLRKLSI 276 (515)
Q Consensus 200 ~~L~~L~L~~n~i~~~--~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~ 276 (515)
+.++.++|.+|.|+.. +...+.+++.|++|+++.|++...+-..-....+|+.|.|.+..+.= .....+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 3345555555555432 22345667777777777777754332211345677777777766541 22334556677777
Q ss_pred EECCCCcCcCCC--CccccCCc-ccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccc
Q 043235 277 MDLSRNRLNGPI--PSCLGNVP-FWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYE 353 (515)
Q Consensus 277 L~L~~n~i~~~~--p~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (515)
|+++.|...... ..+..... .+..+....+.. . .+...
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~-------------------------~----------~w~~~---- 191 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE-------------------------Q----------LWLNK---- 191 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHH-------------------------H----------HHHHH----
Confidence 777777442110 00000000 000000000000 0 00000
Q ss_pred cccccccccCCEEEcCCCcCcccc-ccchhccccCCeeccCCcccccc-ChhhhcCccCCCeeeCCCCcccccCCc----
Q 043235 354 FFIGSNLNYMAGLDLSGNEFSGEI-PWKIGQLQNIRALNLSNNLLSGA-IPESFSNLKMIESLDLSRNKLSGQIPP---- 427 (515)
Q Consensus 354 ~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~---- 427 (515)
.-.+..++++..+-+..|.+.... -..+..++.+.-|+|+.|+|... .-+++.+++.|..|.+++|.+.+.+..
T Consensus 192 ~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err 271 (418)
T KOG2982|consen 192 NKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERR 271 (418)
T ss_pred HhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcce
Confidence 001134788888888888776432 23356677778899999988632 346778889999999999988744322
Q ss_pred --cccCCCCCCEEecc
Q 043235 428 --QLTELNFLSNFNVS 441 (515)
Q Consensus 428 --~l~~l~~L~~L~Ls 441 (515)
.++.+++++.|+=+
T Consensus 272 ~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 272 FLLIARLTKVQVLNGS 287 (418)
T ss_pred EEEEeeccceEEecCc
Confidence 25667777777654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-08 Score=78.64 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=73.5
Q ss_pred CCcEEECcCCcccccCCcc---ccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCE
Q 043235 37 KLIYLDMSKNNFEGNIPYS---VGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGS 113 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~---~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 113 (515)
.+..++|+.|.+- .++++ +....+|+..+|++|.+. .+|..+-...+.++.|++++|.|+ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4566777777665 33433 344566667778888777 777777666667777788877776 45566777777777
Q ss_pred EEcccCCCCCcCChhhhCCCCCcEEEcccCcCC
Q 043235 114 LYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 114 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
|+++.|.+. ..|..+..+.++.+|+..+|.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 777777776 56666666777777777777665
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-06 Score=74.05 Aligned_cols=104 Identities=23% Similarity=0.182 Sum_probs=51.8
Q ss_pred CCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcC-ChhhhCCCCCcEE
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKM-TDGLLSSTLLRVL 138 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L 138 (515)
.+...+||++|.+. .++. |..++.|.+|.+++|+|+.+.|.--..+++|+.|.|.+|.|.... .+.+..+++|++|
T Consensus 42 d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34555666666554 4433 445556666666666665544443344555666666666554211 1234445556666
Q ss_pred EcccCcCCCCcC---hhccCCCCccEEEccC
Q 043235 139 NVSNNMLSGDIP---HWIGNFSVLSVLLMSE 166 (515)
Q Consensus 139 ~l~~n~l~~~~~---~~~~~l~~L~~L~l~~ 166 (515)
.+-+|.++..-- ..+..+++|+.||+.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 665555542211 1234445555555443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-07 Score=74.17 Aligned_cols=134 Identities=22% Similarity=0.290 Sum_probs=92.7
Q ss_pred CccEEeCcCCcCCCCCchhHHhcc--cCCcEEECcCCcccccCCcccc-CCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIF--QKLIYLDMSKNNFEGNIPYSVG-EMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
.+-.+||+.+.+- .+++...... .+|...+|++|.+. ..|..|. ..+.++.|++++|.|. .+|.+ +..++.|+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPALR 103 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHhh
Confidence 3556788888775 5666555422 35666789999888 4565554 4568889999999998 88888 47788999
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcCh
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPH 151 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 151 (515)
.|+++.|.+. ..|..+..+.++-.|+..+|.+..+..+ +......-..++.++.+.+..+.
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH-HhccccHHHHHhcCCcccccCcc
Confidence 9999999886 4567777788888888888887744333 33333333444556666554443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-06 Score=77.75 Aligned_cols=218 Identities=23% Similarity=0.221 Sum_probs=110.2
Q ss_pred CCCCCCEEECcCCcCcccCchHH---HhCCCCCCEEEccCcccc---c-------cCCccccCCCCCCEEEcccCCCCCc
Q 043235 58 EMKELTILDLSRNNFTGKLPRPI---VSSCLSLDWLDLSNNNFY---G-------QLFPNYMNLTDLGSLYLDNNHFSGK 124 (515)
Q Consensus 58 ~l~~L~~L~L~~n~l~~~l~~~~---~~~l~~L~~L~L~~n~i~---~-------~~~~~~~~l~~L~~L~L~~n~i~~~ 124 (515)
.+..++.++||+|.|...-...+ ..+-.+|+..+++.--.. . ....++.+||+|+..+|+.|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35667777777776653222221 122345555555532110 1 1112334455555555555555433
Q ss_pred CCh----hhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC---
Q 043235 125 MTD----GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--- 197 (515)
Q Consensus 125 ~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--- 197 (515)
.|. .+++.+.|++|.+++|.+....-..+++ .|.+ +..| .-...-+.|+......|++...+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccchhccCcHHH
Confidence 332 2234445555555555443211111110 0000 0000 11234466777777777774432
Q ss_pred ------CCCcccEEEcccCceeee-----ccccccCCCCccEEeccCCccCCc----CchhhhcCCCcCEEEccCccCCC
Q 043235 198 ------NLSFVKHIYLQNNAIKGL-----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINERSNLHVLLLRGNYLQG 262 (515)
Q Consensus 198 ------~l~~L~~L~L~~n~i~~~-----~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~ 262 (515)
....|+.+.+..|.|... ....+..+.+|+.|||.+|-++-. ....+...+.|+.|.+.+|-++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 234677777777776532 112234467888888888877532 23344555677888888887764
Q ss_pred CCCccc------cCCCCCCEEECCCCcCcC
Q 043235 263 RIPNQL------CQLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 263 ~~~~~~------~~l~~L~~L~L~~n~i~~ 286 (515)
.....+ ...++|..|-..+|.+.+
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 433222 134677778777776654
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.5e-06 Score=70.69 Aligned_cols=127 Identities=22% Similarity=0.222 Sum_probs=97.4
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
=+.+++.+.++. .+ ..++....+...+||++|.+. ....|..++.|.+|.|.+|.|+ .+...+...+++|..|.|
T Consensus 21 e~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccc-ch-hhccccccccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence 466777777765 22 235555668889999999997 3356888999999999999999 888887777889999999
Q ss_pred cCccccccC-CccccCCCCCCEEEcccCCCCCcC---ChhhhCCCCCcEEEcccCc
Q 043235 93 SNNNFYGQL-FPNYMNLTDLGSLYLDNNHFSGKM---TDGLLSSTLLRVLNVSNNM 144 (515)
Q Consensus 93 ~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~l~~n~ 144 (515)
.+|.|.... ...+..+++|++|.+-+|.++... .-.+..+++|+.||..+-.
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999986322 234678899999999999887321 1245678999999988643
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.4e-06 Score=54.28 Aligned_cols=36 Identities=31% Similarity=0.525 Sum_probs=15.6
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCc
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT 73 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 73 (515)
+|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-06 Score=54.64 Aligned_cols=35 Identities=43% Similarity=0.702 Sum_probs=13.7
Q ss_pred CCeeccCCccccccChhhhcCccCCCeeeCCCCccc
Q 043235 387 IRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS 422 (515)
Q Consensus 387 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 422 (515)
|++|++++|+|+ .+|..+.++++|++|++++|+|+
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 22323444444444444444443
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=66.57 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=44.0
Q ss_pred HHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCC
Q 043235 31 LGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTD 110 (515)
Q Consensus 31 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 110 (515)
.+..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +. .++...|.++.+++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 333344555555543 244344445555555555555543 44 44455555555555555543 333233344555555
Q ss_pred CCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc
Q 043235 111 LGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL 159 (515)
Q Consensus 111 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 159 (515)
|+.+.+..+ +.......|... .|+.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 555555443 333334444444 555555544 3332334444444443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.4e-05 Score=75.74 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=28.8
Q ss_pred CCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCc
Q 043235 199 LSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGN 258 (515)
Q Consensus 199 l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 258 (515)
+..+++|++++|.++.+ | .+ ..+|++|.++++.-....|..+. ++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 45566666666666554 2 11 13466666665433234444332 35666666666
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.3e-05 Score=66.03 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=42.9
Q ss_pred ccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCC
Q 043235 54 YSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSST 133 (515)
Q Consensus 54 ~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 133 (515)
.+|.++.+|+.+.+.. .+. .++...|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 3445555555555543 343 444444555555555555443 4333334455554555555543 22223334444455
Q ss_pred CCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCC
Q 043235 134 LLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSL 183 (515)
Q Consensus 134 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 183 (515)
+|+.+++..+ +.......|.+. +++.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555555443 332333344444 555555443 2222333344444433
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.5e-05 Score=72.86 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=29.7
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccC
Q 043235 83 SCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNN 143 (515)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 143 (515)
.+.++++|++++|.++.. |. -..+|++|.++++.--...|+.+ ..+|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 356777777777766532 31 12356777776643222444433 245666666665
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.1e-06 Score=85.33 Aligned_cols=133 Identities=23% Similarity=0.232 Sum_probs=62.5
Q ss_pred CCcEEECcCCccc-ccCCcccc-CCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 37 KLIYLDMSKNNFE-GNIPYSVG-EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 37 ~L~~L~L~~n~i~-~~~~~~~~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+|++|++++...- ...|..++ .+|.|++|.+++-.+...--..+..++++|..||+|+++++.. .+++++++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 4555555553321 11222222 3455555555554443111123334555566666666555432 445555555555
Q ss_pred EcccCCCCC-cCChhhhCCCCCcEEEcccCcCCCCc------ChhccCCCCccEEEccCccccc
Q 043235 115 YLDNNHFSG-KMTDGLLSSTLLRVLNVSNNMLSGDI------PHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 115 ~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
.+.+=.+.. .....+..+++|+.||+|........ -+.-..+|+|+.||.++..+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 555544432 12234445566666666654433111 0111235666666666665553
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.1e-05 Score=82.72 Aligned_cols=178 Identities=20% Similarity=0.178 Sum_probs=115.9
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCccc-----cc--------CCccc--cCCCCCCEEECcCCcCc-cc
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFE-----GN--------IPYSV--GEMKELTILDLSRNNFT-GK 75 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~-----~~--------~~~~~--~~l~~L~~L~L~~n~l~-~~ 75 (515)
++..+++.+.... ........ -..|+.+.|++-... .. .-..+ ..-.+|++|++++...- ..
T Consensus 61 ~ltki~l~~~~~~-~~~~~~l~-~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQ-HQTLEMLR-KQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred eeEEeeccceecc-hhHHHHHh-hccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 4566666666655 23333333 234888888763211 00 00111 12367999999887532 23
Q ss_pred CchHHHhCCCCCCEEEccCcccccc-CCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCC-CcChhc
Q 043235 76 LPRPIVSSCLSLDWLDLSNNNFYGQ-LFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSG-DIPHWI 153 (515)
Q Consensus 76 l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~ 153 (515)
-|..+...+|+|+.|.+++-.+... ......++++|..||+++..++.. .+++.+++|+.|.+.+-.+.. ..-..+
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 4556666789999999988766432 123356789999999999999854 778899999999988877653 112356
Q ss_pred cCCCCccEEEccCccccccc------cccccCCCCCcEEeCCCCCC
Q 043235 154 GNFSVLSVLLMSENYLQGNI------PVQLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 154 ~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~L~~n~l 193 (515)
.++++|+.||+|..+..... -+.-..+++|+.||.|+..+
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 78999999999987654221 12223588999999998877
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=6.2e-06 Score=77.99 Aligned_cols=271 Identities=17% Similarity=0.100 Sum_probs=163.6
Q ss_pred CccEEeCcCCcCCC-CCchhHHhcccCCcEEECcCCc-ccccCCcc-ccCCCCCCEEECcCC-cCcccCchHHHhCCCCC
Q 043235 12 KLRHLDISSNNFSG-KLPENLGIIFQKLIYLDMSKNN-FEGNIPYS-VGEMKELTILDLSRN-NFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 12 ~L~~L~ls~n~l~~-~~p~~~~~~~~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~l~~~~~~~l~~L 87 (515)
.|+.|.+.++.=.+ .--..+...++++++|.+.++. +++..-.. -..+++|++|++..| .++...-..+..++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 57888888875432 2223344568899999998885 33222122 246899999999985 45533333456789999
Q ss_pred CEEEccCccc-cccCC-ccccCCCCCCEEEcccCCCCCcCChhh----hCCCCCcEEEcccCc-CCCCcCh-hccCCCCc
Q 043235 88 DWLDLSNNNF-YGQLF-PNYMNLTDLGSLYLDNNHFSGKMTDGL----LSSTLLRVLNVSNNM-LSGDIPH-WIGNFSVL 159 (515)
Q Consensus 88 ~~L~L~~n~i-~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L 159 (515)
++|+++.+.- ++... ..+.++..++.+.+.+|.=. ..+.+ .....+..+++..|. +++..-. .-..+..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 9999998853 32111 22455666777766654321 11222 233445666655553 2321111 11335678
Q ss_pred cEEEccCccccc-ccccc-ccCCCCCcEEeCCCCCC------CCcC-CCCcccEEEcccCceeee--ccccccCCCCccE
Q 043235 160 SVLLMSENYLQG-NIPVQ-LNNLKSLEFIDLSENSL------ISLS-NLSFVKHIYLQNNAIKGL--IPIALLRSSTLLT 228 (515)
Q Consensus 160 ~~L~l~~n~l~~-~~~~~-l~~l~~L~~L~L~~n~l------~~l~-~l~~L~~L~L~~n~i~~~--~~~~~~~~~~L~~ 228 (515)
+.|..+++.-.+ ..-.+ -.+..+|+.+.++.++- +.+. ..+.|+.+++..+..... ....-.+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 888887764321 11112 23668888888888763 2232 567788888888764321 2223356889999
Q ss_pred EeccCCccC-CcC----chhhhcCCCcCEEEccCccCC-CCCCccccCCCCCCEEECCCCcC
Q 043235 229 LDLRDNKLF-GRI----PHQINERSNLHVLLLRGNYLQ-GRIPNQLCQLRKLSIMDLSRNRL 284 (515)
Q Consensus 229 L~Ls~n~i~-~~~----~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i 284 (515)
+.++++... +.. ...-..+..|+.+.|++++.. +..-..+..+++|+.+++.+++-
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 999988653 221 112234578899999998654 34445677888999999988864
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=9.1e-06 Score=76.88 Aligned_cols=262 Identities=15% Similarity=0.070 Sum_probs=154.1
Q ss_pred CCcEEECcCCccccc--CCccccCCCCCCEEECcCCc-CcccCchHHHhCCCCCCEEEccCc-cccccCCc-cccCCCCC
Q 043235 37 KLIYLDMSKNNFEGN--IPYSVGEMKELTILDLSRNN-FTGKLPRPIVSSCLSLDWLDLSNN-NFYGQLFP-NYMNLTDL 111 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L 111 (515)
.|+.|.++++.=.+. .-..-..++++++|.+.++. ++...-..+...|++|++|++..| .|+..... .-..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 588888888754322 22334678999999998885 443333445567889999999885 34433222 23468899
Q ss_pred CEEEcccCC-CCCcCC-hhhhCCCCCcEEEcccCcCCCCcChhc----cCCCCccEEEccCcc-cccccc-ccccCCCCC
Q 043235 112 GSLYLDNNH-FSGKMT-DGLLSSTLLRVLNVSNNMLSGDIPHWI----GNFSVLSVLLMSENY-LQGNIP-VQLNNLKSL 183 (515)
Q Consensus 112 ~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L 183 (515)
++|+++++. |++... ....+...++.+.+.+|.=. .-+.+ +....+..+++..+. +++..- ..-..+..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 999999885 333111 22345555667766665321 11222 233445666655553 222111 111356788
Q ss_pred cEEeCCCCCC-CC-----cC-CCCcccEEEcccCc-eeeeccccc-cCCCCccEEeccCCccCCc--CchhhhcCCCcCE
Q 043235 184 EFIDLSENSL-IS-----LS-NLSFVKHIYLQNNA-IKGLIPIAL-LRSSTLLTLDLRDNKLFGR--IPHQINERSNLHV 252 (515)
Q Consensus 184 ~~L~L~~n~l-~~-----l~-~l~~L~~L~L~~n~-i~~~~~~~~-~~~~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~ 252 (515)
+.++.+++.. +. +. ..++|+.+.+..++ ++..-...+ .+++.|+.+++..+..... +...-.+++.|++
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 8888887654 21 11 56789999998887 333222222 3567899999988865311 2222345788999
Q ss_pred EEccCccCCCCC-----CccccCCCCCCEEECCCCcCc-CCCCccccCCccccc
Q 043235 253 LLLRGNYLQGRI-----PNQLCQLRKLSIMDLSRNRLN-GPIPSCLGNVPFWRE 300 (515)
Q Consensus 253 L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~i~-~~~p~~~~~l~~l~~ 300 (515)
+.++++...... ...-+.+..|..+.+++++.. +..-+.+..++.++.
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 999988543221 233356678899999998754 233344555555554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00013 Score=65.30 Aligned_cols=84 Identities=24% Similarity=0.243 Sum_probs=37.0
Q ss_pred cCCcEEECcCCcccccCCccccCCCCCCEEECcCC--cCcccCchHHHhCCCCCCEEEccCccccc-cCCccccCCCCCC
Q 043235 36 QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN--NFTGKLPRPIVSSCLSLDWLDLSNNNFYG-QLFPNYMNLTDLG 112 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~ 112 (515)
..|+.|++.+..++. -..|-.+++|+.|.++.| .+.+.++.-+ ..+++|++|++++|+|.. .....+..+.+|.
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchh
Confidence 445555555544441 123444555555555555 3333333322 334555555555555541 0011223344444
Q ss_pred EEEcccCCCC
Q 043235 113 SLYLDNNHFS 122 (515)
Q Consensus 113 ~L~L~~n~i~ 122 (515)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 4455444433
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00033 Score=62.67 Aligned_cols=102 Identities=21% Similarity=0.230 Sum_probs=59.6
Q ss_pred CCCcEEeCCCCCCC---CcCCCCcccEEEcccC--ceeeeccccccCCCCccEEeccCCccCCc-CchhhhcCCCcCEEE
Q 043235 181 KSLEFIDLSENSLI---SLSNLSFVKHIYLQNN--AIKGLIPIALLRSSTLLTLDLRDNKLFGR-IPHQINERSNLHVLL 254 (515)
Q Consensus 181 ~~L~~L~L~~n~l~---~l~~l~~L~~L~L~~n--~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ 254 (515)
..|+.+.+.+..++ .++.+++|++|.++.| ++.+-.+.....+++|+++++++|+|... ....+..+.+|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 34444444444443 3345566777777777 55544444455568888888888887521 112344566777888
Q ss_pred ccCccCCCCC---CccccCCCCCCEEECCCC
Q 043235 255 LRGNYLQGRI---PNQLCQLRKLSIMDLSRN 282 (515)
Q Consensus 255 L~~n~i~~~~---~~~~~~l~~L~~L~L~~n 282 (515)
+.+|..+... ...|.-+++|++||-...
T Consensus 123 l~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 123 LFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cccCCccccccHHHHHHHHhhhhcccccccc
Confidence 8887766422 134556677777765443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=7.1e-05 Score=67.21 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=43.4
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCch-HHHhCCCCCC
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPR-PIVSSCLSLD 88 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~-~~~~~l~~L~ 88 (515)
+.+.+.|++.++.+. .| .+...++.|++|.|+-|+|+.. ..+..|++|+.|+|..|.|. .+.+ .-+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 445556666666665 22 2333356666666666666622 33556666666666666655 3322 2234455555
Q ss_pred EEEccCccc
Q 043235 89 WLDLSNNNF 97 (515)
Q Consensus 89 ~L~L~~n~i 97 (515)
.|.|..|.-
T Consensus 92 ~LWL~ENPC 100 (388)
T KOG2123|consen 92 TLWLDENPC 100 (388)
T ss_pred hHhhccCCc
Confidence 555555543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=7.5e-05 Score=67.06 Aligned_cols=80 Identities=23% Similarity=0.207 Sum_probs=32.5
Q ss_pred CCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcC-ChhhhCCCCCcEEE
Q 043235 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKM-TDGLLSSTLLRVLN 139 (515)
Q Consensus 61 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~ 139 (515)
+.+.|++.+|.++ .| .+...++.|+.|.|+-|+|+. ...|..|++|++|+|..|.|.... ...+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCcc-HH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3444444444444 22 123344444444444444432 123444444444444444443211 11223444444444
Q ss_pred cccCcC
Q 043235 140 VSNNML 145 (515)
Q Consensus 140 l~~n~l 145 (515)
|..|.-
T Consensus 95 L~ENPC 100 (388)
T KOG2123|consen 95 LDENPC 100 (388)
T ss_pred hccCCc
Confidence 444443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.00032 Score=72.14 Aligned_cols=133 Identities=22% Similarity=0.142 Sum_probs=82.3
Q ss_pred CCCCccEEeCcCCcCCCCC-chhHHhcccCCcEEECcCC-cccccC----CccccCCCCCCEEECcCCc-CcccCchHHH
Q 043235 9 KYDKLRHLDISSNNFSGKL-PENLGIIFQKLIYLDMSKN-NFEGNI----PYSVGEMKELTILDLSRNN-FTGKLPRPIV 81 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~-p~~~~~~~~~L~~L~L~~n-~i~~~~----~~~~~~l~~L~~L~L~~n~-l~~~l~~~~~ 81 (515)
.++.|+.+.+.++.-.... -..+...+++|+.|+++++ ...... ......+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3678888888877432121 1234444789999999873 221111 1234567899999999988 6633334444
Q ss_pred hCCCCCCEEEccCcc-ccccCCcc-ccCCCCCCEEEcccCCCCCc--CChhhhCCCCCcEEEcc
Q 043235 82 SSCLSLDWLDLSNNN-FYGQLFPN-YMNLTDLGSLYLDNNHFSGK--MTDGLLSSTLLRVLNVS 141 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~ 141 (515)
..+++|++|.+.+|. ++...... ...++.|++|+++++..... .......+++++.|.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 558899999988887 55433332 34678899999998865411 12223446666665544
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.00029 Score=72.46 Aligned_cols=111 Identities=22% Similarity=0.067 Sum_probs=50.4
Q ss_pred CCCCCEEECcCCcCcccC-chHHHhCCCCCCEEEccCc-cccccC----CccccCCCCCCEEEcccCC-CCCcCChhhhC
Q 043235 59 MKELTILDLSRNNFTGKL-PRPIVSSCLSLDWLDLSNN-NFYGQL----FPNYMNLTDLGSLYLDNNH-FSGKMTDGLLS 131 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l-~~~~~~~l~~L~~L~L~~n-~i~~~~----~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~ 131 (515)
++.|+.|.+.++.-.... -..+...++.|+.|+++++ ...... ......+.+|+.|+++.+. ++...-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455666666555222121 1223345566666666552 111000 1122334556666666655 44333333332
Q ss_pred -CCCCcEEEcccCc-CCCCcC-hhccCCCCccEEEccCccc
Q 043235 132 -STLLRVLNVSNNM-LSGDIP-HWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 132 -l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l 169 (515)
+++|++|.+.++. ++...- .....++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5566666655554 332211 1223455566666665544
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.0043 Score=33.05 Aligned_cols=12 Identities=58% Similarity=0.791 Sum_probs=5.2
Q ss_pred CCeeeCCCCccc
Q 043235 411 IESLDLSRNKLS 422 (515)
Q Consensus 411 L~~L~Ls~N~l~ 422 (515)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.0083 Score=31.92 Aligned_cols=12 Identities=58% Similarity=0.866 Sum_probs=4.9
Q ss_pred CcEEECcCCccc
Q 043235 38 LIYLDMSKNNFE 49 (515)
Q Consensus 38 L~~L~L~~n~i~ 49 (515)
|++|||++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.0014 Score=57.49 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=75.7
Q ss_pred cccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEe
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFN 439 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 439 (515)
+...+.||++.|++. .....|.-++.|..|+++.|++. ..|..+.....++.+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 667888999999987 55566888999999999999998 78999999999999999999998 8899999999999999
Q ss_pred cccCccc
Q 043235 440 VSYNNLS 446 (515)
Q Consensus 440 Ls~N~l~ 446 (515)
+.+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999875
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.043 Score=30.50 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=15.5
Q ss_pred CCCCCEEECcCCcCcccCchHHHh
Q 043235 59 MKELTILDLSRNNFTGKLPRPIVS 82 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l~~~~~~ 82 (515)
+++|++|+|++|+++ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 67766653
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.043 Score=30.50 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=15.5
Q ss_pred CCCCCEEECcCCcCcccCchHHHh
Q 043235 59 MKELTILDLSRNNFTGKLPRPIVS 82 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l~~~~~~ 82 (515)
+++|++|+|++|+++ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 67766653
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.00052 Score=69.16 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=44.5
Q ss_pred CCCCcEEEcccCcCCCCc----ChhccCCCC-ccEEEccCcccccc----ccccccCC-CCCcEEeCCCCCCCCc-----
Q 043235 132 STLLRVLNVSNNMLSGDI----PHWIGNFSV-LSVLLMSENYLQGN----IPVQLNNL-KSLEFIDLSENSLISL----- 196 (515)
Q Consensus 132 l~~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~l----- 196 (515)
..++++|.+++|.++... ...+...+. +..+++..|.+.+. ....+..+ ..++.++++.|.+...
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 455666666666655211 112333333 55566666666533 11223333 5567777777776432
Q ss_pred ----CCCCcccEEEcccCceee
Q 043235 197 ----SNLSFVKHIYLQNNAIKG 214 (515)
Q Consensus 197 ----~~l~~L~~L~L~~n~i~~ 214 (515)
...+.++.+.+.+|.+..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 245567777777777654
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.039 Score=27.16 Aligned_cols=11 Identities=55% Similarity=0.742 Sum_probs=3.2
Q ss_pred CCEEECcCCcC
Q 043235 62 LTILDLSRNNF 72 (515)
Q Consensus 62 L~~L~L~~n~l 72 (515)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
|
... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.00058 Score=68.84 Aligned_cols=183 Identities=22% Similarity=0.162 Sum_probs=95.8
Q ss_pred CCEEECcCCcCcccCch---HHHhCCCCCCEEEccCccccccCCcc----ccCC-CCCCEEEcccCCCCCc----CChhh
Q 043235 62 LTILDLSRNNFTGKLPR---PIVSSCLSLDWLDLSNNNFYGQLFPN----YMNL-TDLGSLYLDNNHFSGK----MTDGL 129 (515)
Q Consensus 62 L~~L~L~~n~l~~~l~~---~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~L~~n~i~~~----~~~~~ 129 (515)
+..|.|.+|.+...-.. ..+....+|..|++++|.+....... +... ..+++|.+..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67777777777632222 12344567777888888776322222 2222 4566677777776643 33445
Q ss_pred hCCCCCcEEEcccCcCCCC----cChhc----cCCCCccEEEccCcccccccc----ccccCCCCCcEEeCCCCCCCCcC
Q 043235 130 LSSTLLRVLNVSNNMLSGD----IPHWI----GNFSVLSVLLMSENYLQGNIP----VQLNNLKSLEFIDLSENSLISLS 197 (515)
Q Consensus 130 ~~l~~L~~L~l~~n~l~~~----~~~~~----~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~l~ 197 (515)
.....++.++++.|.+... .+..+ ....++++|.+.+|.++.... ..+...+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~--------------- 233 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGES--------------- 233 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccch---------------
Confidence 5566777778877776311 11122 234456666666665542111 11222222
Q ss_pred CCCcccEEEcccCceeee----ccccccCC-CCccEEeccCCccCCcCch----hhhcCCCcCEEEccCccCCC
Q 043235 198 NLSFVKHIYLQNNAIKGL----IPIALLRS-STLLTLDLRDNKLFGRIPH----QINERSNLHVLLLRGNYLQG 262 (515)
Q Consensus 198 ~l~~L~~L~L~~n~i~~~----~~~~~~~~-~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~i~~ 262 (515)
.+..+++..|.+.+. ....+..+ ..++.++++.|.|++.... .+..++.++.+.++.|.+.+
T Consensus 234 ---~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 234 ---LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred ---hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 133344444444332 11223333 4567777777777654333 33445677777777777764
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.0016 Score=57.16 Aligned_cols=84 Identities=21% Similarity=0.192 Sum_probs=59.6
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+...+.||++.|++. ..-..|+-++.|..|+++.|++. .+|.++ .....++++++..|..+ ..|.+++..+.++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 567777777777766 34455666777777778777776 677665 55667777777777765 556777777788877
Q ss_pred EcccCCCC
Q 043235 115 YLDNNHFS 122 (515)
Q Consensus 115 ~L~~n~i~ 122 (515)
++-+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777654
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.053 Score=26.68 Aligned_cols=13 Identities=46% Similarity=0.805 Sum_probs=5.1
Q ss_pred CccEEeCcCCcCC
Q 043235 12 KLRHLDISSNNFS 24 (515)
Q Consensus 12 ~L~~L~ls~n~l~ 24 (515)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555544
|
... |
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.15 Score=28.30 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=13.1
Q ss_pred CCccEEeCcCCcCCCCCchhHH
Q 043235 11 DKLRHLDISSNNFSGKLPENLG 32 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~ 32 (515)
++|++|++++|+++ .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.15 Score=28.30 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=13.1
Q ss_pred CCccEEeCcCCcCCCCCchhHH
Q 043235 11 DKLRHLDISSNNFSGKLPENLG 32 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~ 32 (515)
++|++|++++|+++ .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.025 Score=48.90 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=60.7
Q ss_pred cCCEEEcCCCcCccccccchhccccCCeeccCCcccccc-Chhhhc-CccCCCeeeCCCC-cccccCCccccCCCCCCEE
Q 043235 362 YMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGA-IPESFS-NLKMIESLDLSRN-KLSGQIPPQLTELNFLSNF 438 (515)
Q Consensus 362 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L 438 (515)
.++.+|-++..|..+.-+.+.++++++.|.+.+|.-.+. --+-++ -.++|+.|+|++| +|++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 467799999999888778888899999999998854321 111111 3579999999988 5776666677888888888
Q ss_pred ecccC
Q 043235 439 NVSYN 443 (515)
Q Consensus 439 ~Ls~N 443 (515)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 87653
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.034 Score=48.09 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=16.2
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCC
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 70 (515)
++.+|-++..|....-+.+.+++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 444555555554444444444555555555444
|
|
| >smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily | Back alignment and domain information |
|---|
Probab=83.06 E-value=1.3 Score=24.57 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=8.7
Q ss_pred CCCcEEeCCCCCCCCcC
Q 043235 181 KSLEFIDLSENSLISLS 197 (515)
Q Consensus 181 ~~L~~L~L~~n~l~~l~ 197 (515)
.+|+.|+++.|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34555555555554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 515 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 5e-40 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 7e-12 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 7e-40 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 1e-11 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 5e-16 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 7e-08 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 415 bits (1069), Expect = e-138
Identities = 162/504 (32%), Positives = 233/504 (46%), Gaps = 13/504 (2%)
Query: 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTI 64
+P L++L ++ N F+G++P+ L L LD+S N+F G +P G L
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 65 LDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLT-DLGSLYLDNNHFSG 123
L LS NNF+G+LP + L LDLS N F G+L + NL+ L +L L +N+FSG
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 124 KMTDGLLSSTL--LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLK 181
+ L + L+ L + NN +G IP + N S L L +S NYL G IP L +L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 182 SLEFIDLSENSLI-----SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
L + L N L L + ++ + L N + G IP L + L + L +N+L
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP 296
G IP I NL +L L N G IP +L R L +DL+ N NG IP+ +
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 297 FWREATDDDSSEFFYANNVDSPVAYYNSSLELQL--PVELHFRQDQQVGAKFVTKNRYEF 354
A + Y N + + L+ + +T Y
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 355 FI---GSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMI 411
N M LD+S N SG IP +IG + + LNL +N +SG+IP+ +L+ +
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 412 ESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCG 471
LDLS NKL G+IP ++ L L+ ++S NNLSGPIP+ QF TF + N LCG
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Query: 472 SMIKRKCSSALTPPATPTGGGEDE 495
+ R S A
Sbjct: 743 YPLPRCDPSNADGYAHHQRSHHHH 766
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 297 bits (762), Expect = 2e-92
Identities = 123/456 (26%), Positives = 195/456 (42%), Gaps = 41/456 (8%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIP--YSVGEMKELTILDLSR 69
L L +S+++ +G + L LD+S+N+ G + S+G L L++S
Sbjct: 78 GLESLFLSNSHINGSVSGFKC--SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135
Query: 70 NNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM---NLTDLGSLYLDNNHFSGKMT 126
N SL+ LDLS N+ G ++ +L L + N SG +
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195
Query: 127 DGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI 186
+ L L+VS+N S IP ++G+ S L L +S N L G+ ++ L+ +
Sbjct: 196 VSRCVN--LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 187 DLSENSL---ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLT-LDLRDNKLFGRIPH 242
++S N I L ++++ L N G IP L + LT LDL N +G +P
Sbjct: 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 243 QINERSNLHVLLLRGNYLQGRIPNQ-LCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREA 301
S L L L N G +P L ++R L ++DLS N +G +P L N+
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA---- 368
Query: 302 TDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGS--- 358
++N + + L + ++ N F G
Sbjct: 369 ---SLLTLDLSSN----------NFSGPILPNLCQNPKNTLQELYLQNNG---FTGKIPP 412
Query: 359 ---NLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLD 415
N + + L LS N SG IP +G L +R L L N+L G IP+ +K +E+L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 416 LSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
L N L+G+IP L+ L+ ++S N L+G IP
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 264 bits (678), Expect = 4e-80
Identities = 121/456 (26%), Positives = 185/456 (40%), Gaps = 64/456 (14%)
Query: 13 LRHLDISSNNFS---GKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSR 69
+ +D+SS + + +L L L +S ++ G++ LT LDLSR
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLS-LTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSR 109
Query: 70 NNFTGKLPRPI-VSSCLSLDWLDLSNNNFYGQL-FPNYMNLTDLGSLYLDNNHFSGKMTD 127
N+ +G + + SC L +L++S+N + L L L L N SG
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 128 GLL---SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLE 184
G + L+ L +S N +SGD+ + L L +S N IP L + +L+
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQ 226
Query: 185 FIDLSENSLI-----SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGR 239
+D+S N L ++S + +K + + +N G IP L+S L L L +NK G
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS--LQYLSLAENKFTGE 284
Query: 240 IPHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP-SCLGNVPF 297
IP ++ L L L GN+ G +P L + LS N +G +P L +
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR- 343
Query: 298 WREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG 357
+ + +LP L +
Sbjct: 344 --------GLKVLDL---------SFNEFSGELPESL-------------------TNLS 367
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQ--LQNIRALNLSNNLLSGAIPESFSNLKMIESLD 415
++L LDLS N FSG I + Q ++ L L NN +G IP + SN + SL
Sbjct: 368 ASLLT---LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 416 LSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
LS N LSG IP L L+ L + + N L G IP
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 1e-69
Identities = 106/433 (24%), Positives = 176/433 (40%), Gaps = 63/433 (14%)
Query: 36 QKLIYLDMSKNNFE---GNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92
K+ +D+S + S+ + L L LS ++ G + SL LDL
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDL 107
Query: 93 SNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKM-TDGLLSSTLLRVLNVSNNMLSGDI 149
S N+ G + + + L L + +N G L L VL++S N +SG
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167
Query: 150 PHWI---GNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI----SLSNLSFV 202
L L +S N + G++ ++ +LEF+D+S N+ L + S +
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225
Query: 203 KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQG 262
+H+ + N + G A+ + L L++ N+ G IP +L L L N G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTG 283
Query: 263 RIPNQLC-QLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAY 321
IP+ L L+ +DLS N G +P G+ E
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS---------LLESLAL--------- 325
Query: 322 YNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKI 381
+++ +LP++ + + LDLS NEFSGE+P +
Sbjct: 326 SSNNFSGELPMD----------------------TLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 382 GQL-QNIRALNLSNNLLSGAIPESFSN--LKMIESLDLSRNKLSGQIPPQLTELNFLSNF 438
L ++ L+LS+N SG I + ++ L L N +G+IPP L+ + L +
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 439 NVSYNNLSGPIPD 451
++S+N LSG IP
Sbjct: 424 HLSFNYLSGTIPS 436
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 1e-64
Identities = 78/297 (26%), Positives = 135/297 (45%), Gaps = 5/297 (1%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
ILP L + L+ L + +N F+GK+P L +L+ L +S N G IP S+G +
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
+L L L N G++P+ + +L+ L L N+ G++ N T+L + L NN
Sbjct: 443 KLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNL 180
+G++ + L +L +SNN SG+IP +G+ L L ++ N G IP +
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 181 KSLEFIDLSENSL-ISLSNLSFVKHIYLQNNAI--KGLIPIALLRSSTLLTLDLRDNKLF 237
+ + + N K + N + +G+ L R ST ++
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 238 GRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294
G + ++ L + N L G IP ++ + L I++L N ++G IP +G+
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 5e-34
Identities = 66/284 (23%), Positives = 108/284 (38%), Gaps = 55/284 (19%)
Query: 179 NLKSLEFIDLSENSLI--------SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLD 230
+ IDLS L SL +L+ ++ ++L N+ I G + S++L +LD
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106
Query: 231 LRDNKLFGRIP--HQINERSNLHVLLLRGNYLQGRIP-NQLCQLRKLSIMDLSRNRLNGP 287
L N L G + + S L L + N L + +L L ++DLS N ++G
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 288 IPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFV 347
E S + + + V
Sbjct: 167 NVVGWVLSDGCGELKHLAIS---------------GNKISGDVDV--------------- 196
Query: 348 TKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSN 407
S + LD+S N FS IP+ +G ++ L++S N LSG + S
Sbjct: 197 ----------SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIST 245
Query: 408 LKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
++ L++S N+ G IPP L L +++ N +G IPD
Sbjct: 246 CTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPD 287
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 385 QNIRALNLSNNLLS---GAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVS 441
+ +++LS+ L+ A+ S +L +ESL LS + ++G + L++ ++S
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108
Query: 442 YNNLSGPIPDKEQFA 456
N+LSGP+
Sbjct: 109 RNSLSGPVTTLTSLG 123
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 206 bits (527), Expect = 8e-63
Identities = 82/338 (24%), Positives = 126/338 (37%), Gaps = 64/338 (18%)
Query: 138 LNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG--NIPVQLNNLKSLEFIDLSENSLIS 195
+ N G + ++ L +S L IP L NL L F+ +
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI---- 86
Query: 196 LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLL 255
N + G IP A+ + + L L + + G IP +++ L L
Sbjct: 87 --------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 256 RGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFY-ANN 314
N L G +P + L L + NR++G IP G+ + N
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS--------KLFTSMTISRN 184
Query: 315 VDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFS 374
L ++P +NLN +A +DLS N
Sbjct: 185 ----------RLTGKIPPTF-----------------------ANLN-LAFVDLSRNMLE 210
Query: 375 GEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNF 434
G+ G +N + ++L+ N L+ + K + LDL N++ G +P LT+L F
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 435 LSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGS 472
L + NVS+NNL G IP FD +Y N LCGS
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 2e-50
Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 32/287 (11%)
Query: 12 KLRHLDISSNNFSG--KLPENLGIIFQKLIYLDMSK-NNFEGNIPYSVGEMKELTILDLS 68
++ +LD+S N +P +L L +L + NN G IP ++ ++ +L L ++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 69 RNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDG 128
N +G +P + S +L LD S N G L P+ +L +L + D N SG + D
Sbjct: 110 HTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 129 LLS-STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFID 187
S S L + +S N L+G IP N + L+ + +S N L+G+ V + K+ + I
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 188 LSENSLISLSNLSFVKHIYLQNNAIKGLIP-IALLRSSTLLTLDLRDNKLFGRIPHQINE 246
L++NSL + + L ++ L LDLR+N+++G +P + +
Sbjct: 228 LAKNSLA-------------------FDLGKVGLSKN--LNGLDLRNNRIYGTLPQGLTQ 266
Query: 247 RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL--NGPIPSC 291
LH L + N L G IP L++ + + N+ P+P+C
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 2e-50
Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 10/258 (3%)
Query: 41 LDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRP-IVSSCLSLDWLDLSN-NNFY 98
D + G + + + + LDLS N P P +++ L++L + NN
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 99 GQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSV 158
G + P LT L LY+ + + SG + D L L L+ S N LSG +P I +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 159 LSVLLMSENYLQGNIPVQLNNLKSL-EFIDLSENSLI-----SLSNLSFVKHIYLQNNAI 212
L + N + G IP + L + +S N L + +NL+ + L N +
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML 209
Query: 213 KGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR 272
+G + + L N L + ++ NL+ L LR N + G +P L QL+
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 273 KLSIMDLSRNRLNGPIPS 290
L +++S N L G IP
Sbjct: 269 FLHSLNVSFNNLCGEIPQ 286
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 5e-46
Identities = 75/329 (22%), Positives = 125/329 (37%), Gaps = 60/329 (18%)
Query: 112 GSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSG--DIPHWIGNFSVLSVL-LMSENY 168
+ N + G + D + + L++S L IP + N L+ L + N
Sbjct: 29 PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88
Query: 169 LQGNIPVQLNNLKSLEFIDLSENSLI-----SLSNLSFVKHIYLQNNAIKGLIPIALLRS 223
L G IP + L L ++ ++ ++ LS + + + NA+ G +P ++
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 224 STLLTLDLRDNKLFGRIPHQINERSNLHVLL-LRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
L+ + N++ G IP S L + + N L G+IP L L+ +DLSRN
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207
Query: 283 RLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLE-LQLPVELHFRQDQQ 341
L G G+ + + + + L
Sbjct: 208 MLEGDASVLFGS----------------------------DKNTQKIHL----------- 228
Query: 342 VGAKFVTKNRYEFFIGS--NLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG 399
KN F +G + GLDL N G +P + QL+ + +LN+S N L G
Sbjct: 229 ------AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 400 AIPESFSNLKMIESLDLSRNK-LSGQIPP 427
IP+ NL+ + + NK L G P
Sbjct: 283 EIPQG-GNLQRFDVSAYANNKCLCGSPLP 310
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 4e-16
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 365 GLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG--AIPESFSNLKMIESLDLS-RNKL 421
D + G + Q + L+LS L IP S +NL + L + N L
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 422 SGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
G IPP + +L L +++ N+SG IPD
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 1e-55
Identities = 82/473 (17%), Positives = 158/473 (33%), Gaps = 60/473 (12%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQ--KLIYLDMSKNNFEGNIPYSVGEMK--ELTILDL 67
+L L +++ L E L + + L +S + + +K LT+LDL
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 68 SRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTD 127
S NN + + L++ L NN + L ++ L L + ++
Sbjct: 256 SYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314
Query: 128 GLLSS---------TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN--IPVQ 176
L L LN+ +N + G + L L +S ++
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374
Query: 177 LNNL--KSLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLT- 228
+L L ++L++N + + S L ++ + L N I + R +
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434
Query: 229 LDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQG--RIPNQLCQLRKLSIMDLSRNRLNG 286
+ L NK + +L L+LR L+ P+ LR L+I+DLS N +
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494
Query: 287 PIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKF 346
L + LE+ ++L ++
Sbjct: 495 INDDMLEGLE----------------------------KLEI---LDLQHNNLARLWKHA 523
Query: 347 VTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFS 406
F L+++ L+L N F L ++ ++L N L+ F+
Sbjct: 524 NPGGPIYFL--KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581
Query: 407 NLKMIESLDLSRNKLSGQIPPQL-TELNFLSNFNVSYNNLSGPIPDKEQFATF 458
N ++SL+L +N ++ L+ ++ +N F +
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 1e-53
Identities = 90/464 (19%), Positives = 161/464 (34%), Gaps = 39/464 (8%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+L LD+ N S PE L L++ N + LT L L N+
Sbjct: 50 QLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG--KMTDGL 129
+ +L LDLS+N + L +L L L NN +
Sbjct: 109 IQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167
Query: 130 LSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQL---NNLKSLEFI 186
+++ L+ L +S+N + P L L ++ L ++ +L S+ +
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227
Query: 187 DLSENSLISLSNLSFV-------KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGR 239
LS + L + SN +F+ + L N + + + L L N +
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287
Query: 240 IPHQINERSNLHVLLLRGNYLQGRI---------PNQLCQLRKLSIMDLSRNRLNGPIPS 290
H ++ N+ L L+ ++ + I L+ L +++ N + G +
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347
Query: 291 CLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKN 350
+ + + +S ++ V+ +S L L+ K
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH-----ILNLT-----KNKISKIE 397
Query: 351 RYEFFIGSNLNYMAGLDLSGNEFSGEIPWK-IGQLQNIRALNLSNNLLSGAIPESFSNLK 409
F +L LDL NE E+ + L+NI + LS N SF+ +
Sbjct: 398 SDAFSWLGHLEV---LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454
Query: 410 MIESLDLSRNKLSG--QIPPQLTELNFLSNFNVSYNNLSGPIPD 451
++ L L R L P L L+ ++S NN++ D
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 5e-52
Identities = 78/455 (17%), Positives = 151/455 (33%), Gaps = 33/455 (7%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
+ L+++ N N + +L LD+ N P ++ L +L+L N
Sbjct: 27 ITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS 132
+ L + C +L L L +N+ ++ +L +L L +N S +
Sbjct: 86 SQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144
Query: 133 TLLRVLNVSNNMLSGDIPHWIGNF--SVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSE 190
L+ L +SNN + + F S L L +S N ++ P + + L + L+
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204
Query: 191 NSLISL--------SNLSFVKHIYLQNNAIKGLIPIAL--LRSSTLLTLDLRDNKLFGRI 240
L + ++++ L N+ + L+ + L LDL N L
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264
Query: 241 PHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE 300
L L N +Q + L L + ++L R+ I
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA--------S 316
Query: 301 ATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFR-------QDQQVGAKFVTKNRYE 353
D F + ++ N ++ + + + +T +
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376
Query: 354 FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIP-ESFSNLKMIE 412
S L+ L+L+ N+ S L ++ L+L N + + + + L+ I
Sbjct: 377 SLAHSPLHI---LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433
Query: 413 SLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSG 447
+ LS NK + L + L
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 1e-51
Identities = 85/473 (17%), Positives = 152/473 (32%), Gaps = 49/473 (10%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQ-KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
L+ L +S+N E L I L L++S N + P + L L L+
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205
Query: 71 NFTGKLPRPI--VSSCLSLDWLDLSNNNFYG---QLFPNYMNLTDLGSLYLDNNHFSGKM 125
L + + S+ L LSN+ F + T+L L L N+ +
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVG 264
Query: 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI---------PVQ 176
D L + N + H + + L + ++ + +I
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324
Query: 177 LNNLKSLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPIAL----LRSSTLL 227
LK LE +++ +N + + + L +K++ L N+ L S L
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384
Query: 228 TLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQ-LCQLRKLSIMDLSRNRLNG 286
L+L NK+ + +L VL L N + + Q L + + LS N+
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444
Query: 287 PIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKF 346
+ VP + + + + + L+ L
Sbjct: 445 LTRNSFALVPSLQRL-------MLRRVALKNVDSSPSPFQPLRNLTILDLS-----NNNI 492
Query: 347 VTKNRYEFFIGSNLNYMAGLDLSGN--------EFSGEIPWKIGQLQNIRALNLSNNLLS 398
N L + LDL N G + + L ++ LNL +N
Sbjct: 493 ANINDDML---EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549
Query: 399 GAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
E F +L ++ +DL N L+ L + N+ N ++
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 7e-49
Identities = 83/457 (18%), Positives = 165/457 (36%), Gaps = 53/457 (11%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
D S + ++P++ + + L+++ N + +LT LD+ N
Sbjct: 6 HEVADCSHLKLT-QVPDD---LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS 132
+ L + L L+L +N + T+L L+L +N + +
Sbjct: 62 SK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 133 TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLK--SLEFIDLSE 190
L L++S+N LS L LL+S N +Q +L+ SL+ ++LS
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 191 NSLI-----SLSNLSFVKHIYLQNNAIKGLIPIAL---LRSSTLLTLDLRDNKLFGRIPH 242
N + + + ++L N + + L L ++++ L L +++L
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 243 QIN--ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE 300
+ +NL +L L N L + L +L L N + L +
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL----- 295
Query: 301 ATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNL 360
++ L ++ F + A + + F L
Sbjct: 296 -----------------------FNVR-YLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331
Query: 361 NYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGA--IPESFSNLKM--IESLDL 416
+ L++ N+ G L N++ L+LSN+ S E+F +L + L+L
Sbjct: 332 EH---LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388
Query: 417 SRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKE 453
++NK+S + L L ++ N + + +E
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 4e-47
Identities = 88/476 (18%), Positives = 151/476 (31%), Gaps = 79/476 (16%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPY--SVGEMKELTILDLSR 69
L LD+S N S + + L L +S N + + L L+LS
Sbjct: 122 NLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 70 NNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQL---FPNYMNLTDLGSLYLDNNHFSG--K 124
N + L L L+N L + T + +L L N+ S
Sbjct: 181 NQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239
Query: 125 MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLE 184
T L T L +L++S N L+ L + N +Q L+ L ++
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299
Query: 185 FIDLSENSLI--------------SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLD 230
+++L + S L ++H+ +++N I G+ L L
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359
Query: 231 LRDNKLFGRIPHQIN----ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286
L ++ R S LH+L L N + + L L ++DL N +
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419
Query: 287 PI-PSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAK 345
+ + ++ E++ K
Sbjct: 420 ELTGQEWRGLE----------------------------NIF-----EIYLS-----YNK 441
Query: 346 FVTKNRYEFFIGSNLNYMAGLDLSGNEFSG--EIPWKIGQLQNIRALNLSNNLLSGAIPE 403
++ R F + +L L L P L+N+ L+LSNN ++ +
Sbjct: 442 YLQLTRNSFALVPSLQR---LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 404 SFSNLKMIESLDLSRNKLS--------GQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
L+ +E LDL N L+ G L L+ L N+ N +
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 8e-47
Identities = 89/459 (19%), Positives = 153/459 (33%), Gaps = 57/459 (12%)
Query: 12 KLRHLDISSNNFSGKLPENL-GIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
+R+L +S++ S G+ + L LD+S NN S + +L L N
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM---------NLTDLGSLYLDNNHF 121
N L + ++ +L+L + + + L L L +++N
Sbjct: 283 NIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 122 SGKMTDGLLSSTLLRVLNVSNNMLSGDIPH----WIGNFSVLSVLLMSENYLQGNIPVQL 177
G ++ L+ L++SN+ S S L +L +++N +
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401
Query: 178 NNLKSLEFIDLSENSLI------SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDL 231
+ L LE +DL N + L + IYL N L + +L L L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Query: 232 RDNKL--FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP 289
R L P NL +L L N + + L L KL I+DL N L
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR--- 518
Query: 290 SCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTK 349
W+ A F S L L+ F
Sbjct: 519 -------LWKHANPGGPIYFLKG----------LSHLH-----ILNLE-----SNGFDEI 551
Query: 350 NRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFS-NL 408
F +L + +DL N + ++++LNL NL++ + F
Sbjct: 552 PVEVF---KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608
Query: 409 KMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSG 447
+ + LD+ N +N+++ + + LS
Sbjct: 609 RNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 3e-42
Identities = 82/415 (19%), Positives = 138/415 (33%), Gaps = 62/415 (14%)
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
+ D S T ++P + + ++ L+L++N N+ + L SL + N
Sbjct: 5 SHEVADCSHLKLT-QVPDDLPT---NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNL 180
S + +L+VLN+ +N LS + L+ L + N +Q
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 181 KSLEFIDLSENSL-----ISLSNLSFVKHIYLQNNAIKGLIPIAL--LRSSTLLTLDLRD 233
K+L +DLS N L + L ++ + L NN I+ L L +S+L L+L
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLC---QLRKLSIMDLSRNRLNGPIPS 290
N++ P + L L L L + +LC + + LS ++L+ +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 291 CLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKN 350
+ ++L L
Sbjct: 241 TFLGLK--------------------------WTNLT-----MLDLS-----YNNLNVVG 264
Query: 351 RYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNL---------LSGAI 401
F L Y L N + L N+R LNL + L
Sbjct: 265 NDSFAWLPQLEY---FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321
Query: 402 PESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFA 456
SF LK +E L++ N + G T L L ++S + S E F
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 6e-33
Identities = 64/352 (18%), Positives = 118/352 (33%), Gaps = 50/352 (14%)
Query: 109 TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168
+ + ++ D L ++ + VLN+++N L +S L+ L + N
Sbjct: 4 VSHEVADCSHLKLT-QVPDDLPTN--ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 169 LQGNIPVQLNNLKSLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALLRS 223
+ P L L+ ++L N L L + + + ++L +N+I+ + ++
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 224 STLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPN--QLCQLRKLSIMDLSR 281
L+TLDL N L + NL LLL N +Q + L ++LS
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 282 NRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQ 341
N++ P C + L L
Sbjct: 181 NQIKEFSPGCFHAIG----------------------------RLF-----GLFLN---- 203
Query: 342 VGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQ--NIRALNLSNNLLSG 399
+ + + + L LS ++ S L+ N+ L+LS N L+
Sbjct: 204 -NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262
Query: 400 AIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
+SF+ L +E L N + L L + N+ + I
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-30
Identities = 57/291 (19%), Positives = 100/291 (34%), Gaps = 28/291 (9%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILDLSRN 70
L L+++ N S + L LD+ N + ++ + + LS N
Sbjct: 382 PLHILNLTKNKISKIESDAFSW-LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYG--QLFPNYMNLTDLGSLYLDNNHFSGKMTDG 128
+ L R + SL L L + L +L L L NN+ + D
Sbjct: 441 KYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499
Query: 129 LLSSTLLRVLNVSNNMLS--------GDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNL 180
L L +L++ +N L+ G +++ S L +L + N +L
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559
Query: 181 KSLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALLRS-STLLTLDLRDN 234
L+ IDL N+L +L +N +K + LQ N I + + L LD+R N
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Query: 235 KLFGRIPH-----QINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLS 280
++ ++ L +YL P+ +
Sbjct: 620 PFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPH----YHGFPVRLFD 666
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 7e-53
Identities = 67/503 (13%), Positives = 151/503 (30%), Gaps = 98/503 (19%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
+ P + L I+S+ + ++ I K + NN + +V +
Sbjct: 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI-TLKDTQIGQLSNNITF-VSKAVMRLT 206
Query: 61 ELTILDLSRNNFTGKLPRPIV------------------SSCLSLDWLDLSNNNFYGQLF 102
+L + + F + + L +++ N +L
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266
Query: 103 PNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTL--------LRVLNVSNNML-SGDIPHWI 153
L ++ + + N L ++++ + N L + + +
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326
Query: 154 GNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL-----SNLSFVKHIYLQ 208
L +L N L+G +P + L ++L+ N + + V+++
Sbjct: 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385
Query: 209 NNAIKGLIPIALLRS-STLLTLDLRDNKL-------FGRIPHQINERSNLHVLLLRGNYL 260
+N +K + I +S S + +D N++ F + + N+ + L N +
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445
Query: 261 QGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVA 320
LS ++L N L + L + F +
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN----------ENFKNTYLL----- 490
Query: 321 YYNSSLELQ------LPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFS 374
+S++L+ L + + L Y+ G+DLS N FS
Sbjct: 491 ---TSIDLRFNKLTKLSDDFRA---------------------TTLPYLVGIDLSYNSFS 526
Query: 375 GEIPWKIGQLQNIRALNLSNNL------LSGAIPESFSNLKMIESLDLSRNKLSGQIPPQ 428
P + ++ + N PE + + L + N + + +
Sbjct: 527 K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEK 584
Query: 429 LTELNFLSNFNVSYNNLSGPIPD 451
+ +S ++ N
Sbjct: 585 I--TPNISVLDIKDNPNISIDLS 605
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 2e-46
Identities = 69/474 (14%), Positives = 153/474 (32%), Gaps = 59/474 (12%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGN----IPYSVGEMKELTILDL 67
++ L + SG++P+ +G +L L + + + N P +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140
Query: 68 SRNNFTGKLPRPI-VSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMT 126
R ++ L ++++ + + + +N+ + ++
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS 199
Query: 127 DGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI 186
++ T LR + N+ + ++ +NLK L +
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDV 254
Query: 187 DLSENSLI-----SLSNLSFVKHIYLQNNAIKGL--------IPIALLRSSTLLTLDLRD 233
++ + L L ++ I + N + + +
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314
Query: 234 NKLF-GRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCL 292
N L + + + L +L N L+G KL+ ++L+ N++ +
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFC 373
Query: 293 GNVPFWREATDDDSSEFFYANN------VDSPVAYYNSSLELQLPVELHFRQDQQVGAKF 346
G E + + A S + ++ + + V K
Sbjct: 374 GFTE---------QVENLSFAHNKLKYIPNIFDAKSVSVMSA---IDFSYNEIGSVDGKN 421
Query: 347 VTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG------- 399
F G N++ ++LS N+ S + ++NL N+L+
Sbjct: 422 FDPLDPTPFKGINVSS---INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478
Query: 400 AIPESFSNLKMIESLDLSRNKLSGQIPP--QLTELNFLSNFNVSYNNLSGPIPD 451
E+F N ++ S+DL NKL+ + + T L +L ++SYN+ S P
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPT 530
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 9e-43
Identities = 73/459 (15%), Positives = 134/459 (29%), Gaps = 89/459 (19%)
Query: 12 KLRHLDISSNNFSGKLPENLGII------------------FQKLIYLDMSKNNFEGNIP 53
KLR + ++ F + + L +++ +P
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266
Query: 54 YSVGEMKELTILDLSRNNFTGKLPRPI-------VSSCLSLDWLDLSNNNF-YGQLFPNY 105
+ + E+ +++++ N + + + NN + +
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326
Query: 106 MNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165
+ LG L N GK+ S L LN++ N ++ ++ G + L +
Sbjct: 327 QKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385
Query: 166 ENYLQGNIP--VQLNNLKSLEFIDLSENSLISLSNLSF------------VKHIYLQNNA 211
N L+ IP ++ + ID S N + S+ +F V I L NN
Sbjct: 386 HNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444
Query: 212 IKGLIPIALLRSSTLLTLDLRDNKL-------FGRIPHQINERSNLHVLLLRGNYLQGRI 264
I S L +++L N L L + LR N L
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504
Query: 265 PN-QLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYN 323
+ + L L +DLS N + P+ N SS + A N
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLN-----------SSTLKGFGIRNQRDAQGN 552
Query: 324 SSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQ 383
+L + P + + + L + N+ + KI
Sbjct: 553 RTLR-EWPEGI-----------------------TLCPSLTQLQIGSNDIRK-VNEKI-- 585
Query: 384 LQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS 422
NI L++ +N L +K
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 6e-39
Identities = 48/383 (12%), Positives = 111/383 (28%), Gaps = 53/383 (13%)
Query: 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS----TLLRV 137
+S + L L G++ LT+L L L ++
Sbjct: 78 NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137
Query: 138 LNVSNNMLSGDIPHWIG--NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS 195
+ +FS L ++ + Q +I I N++
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197
Query: 196 ----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLH 251
+ L+ ++ Y+ N+ + + + + + +L
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLKDLT 252
Query: 252 VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG-PIPSCLGNVPFWREATDDDSSEFF 310
+ + ++P L L ++ +++++ NR ++
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL----------ADAP 302
Query: 311 YANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSG 370
+ YN+ + L + + L+
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSL-----------------------QKMKKLGMLECLY 339
Query: 371 NEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPP--Q 428
N+ G++P G + +LNL+ N ++ + +E+L + NKL IP
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFD 397
Query: 429 LTELNFLSNFNVSYNNLSGPIPD 451
++ +S + SYN +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGK 420
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 1e-38
Identities = 64/324 (19%), Positives = 117/324 (36%), Gaps = 41/324 (12%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNF-SGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEM 59
L P + K++ + I NN + + +L + +KL L+ N EG +P + G
Sbjct: 297 ALADAPVGE--KIQIIYIGYNNLKTFPVETSLQKM-KKLGMLECLYNQLEGKLP-AFGSE 352
Query: 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM---NLTDLGSLYL 116
+L L+L+ N T +P ++ L ++N PN +++ + ++
Sbjct: 353 IKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDF 409
Query: 117 DNNHFSG-------KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169
N + + +N+SNN +S S LS + + N L
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469
Query: 170 QG-------NIPVQLNNLKSLEFIDLSENSL------ISLSNLSFVKHIYLQNNAIKGLI 216
+ N L IDL N L + L ++ I L N+
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-F 528
Query: 217 PIALLRSSTLLTLDLRD------NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ 270
P L SSTL +R+ N+ P I +L L + N ++ + ++
Sbjct: 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI-- 585
Query: 271 LRKLSIMDLSRNRLNGPIPSCLGN 294
+S++D+ N S +
Sbjct: 586 TPNISVLDIKDNPNISIDLSYVCP 609
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-34
Identities = 59/308 (19%), Positives = 102/308 (33%), Gaps = 35/308 (11%)
Query: 12 KLRHLDISSNNFSGKLPE--NLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSR 69
KL L+ N GKLP + KL L+++ N G +++ L +
Sbjct: 331 KLGMLECLYNQLEGKLPAFGSE----IKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386
Query: 70 NNFTGKLPRPIVSSCLSLDWLDLSNNNFYG-------QLFPNYMNLTDLGSLYLDNNHFS 122
N S + +D S N L P ++ S+ L NN S
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446
Query: 123 GKMTDGLLSSTLLRVLNVSNNMLSG-------DIPHWIGNFSVLSVLLMSENYLQGNIP- 174
+ + + L +N+ NML+ D N +L+ + + N L
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506
Query: 175 VQLNNLKSLEFIDLSEN----------SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSS 224
+ L L IDLS N + +L Q N P +
Sbjct: 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566
Query: 225 TLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
+L L + N + ++ +I N+ VL ++ N + +C + + L ++
Sbjct: 567 SLTQLQIGSNDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623
Query: 285 NGPIPSCL 292
I C
Sbjct: 624 QD-IRGCD 630
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-29
Identities = 33/332 (9%), Positives = 80/332 (24%), Gaps = 67/332 (20%)
Query: 139 NVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI---- 194
N +M + + ++ L + G +P + L LE + L +
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 195 -----SLSNLSFVKHIYLQNNAIKGLIP--IALLRSSTLLTLDLRDNKLFGRIPHQINER 247
+S + + S L+ + + I
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182
Query: 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS 307
+ N + + + +L KL + +
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE------------- 228
Query: 308 EFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLD 367
+ ++ NL + ++
Sbjct: 229 ----------NENSEYAQQYKTEDLKW-----------------------DNLKDLTDVE 255
Query: 368 LSGNEFSGEIPWKIGQLQNIRALNLSNNLL--------SGAIPESFSNLKMIESLDLSRN 419
+ ++P + L ++ +N++ N + I+ + + N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 420 KL-SGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
L + + L ++ L YN L G +P
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-19
Identities = 42/301 (13%), Positives = 89/301 (29%), Gaps = 43/301 (14%)
Query: 169 LQGNIPVQLNNLKSLEFIDLSENSL-ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLL 227
QG N + +D+ +SL++ V + L+ G +P A+ + + L
Sbjct: 49 QQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELE 108
Query: 228 TLDLRDNKLFG----RIPHQINERSNLHVLLLRGNYLQGRIPNQL--CQLRKLSIMDLSR 281
L L + P I+ + + Q + L ++
Sbjct: 109 VLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINS 168
Query: 282 NRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDS-PVAYYN-SSLELQLPVELHFRQD 339
+ I D+ +NN+ A + L + +
Sbjct: 169 DPQQKSIKKSSRITL-------KDTQIGQLSNNITFVSKAVMRLTKLR-----QFYMG-- 214
Query: 340 QQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG 399
+ FV +N E + N Y + K L+++ + + N
Sbjct: 215 ---NSPFVAENICEAWENENSEY--------AQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263
Query: 400 AIPESFSNLKMIESLDLSRNKL--------SGQIPPQLTELNFLSNFNVSYNNL-SGPIP 450
+P L ++ ++++ N+ Q + + YNNL + P+
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323
Query: 451 D 451
Sbjct: 324 T 324
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
D GN E P I ++ L + +N + + N+ LD+ N
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISID 603
Query: 426 PPQLTELNFLSNFNVSYNNLS 446
+ + + Y+
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 8/111 (7%)
Query: 357 GSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
G+N N+ LD+ G + + + L+L SG +P++ L +E L L
Sbjct: 57 GANWNFNKELDMWGAQ----PGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112
Query: 417 SRNKLSGQ----IPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSY 463
+ P ++ + D + F D
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
D N + PE + + L L + N+ + + +++LD+ N
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLC-PSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDN 597
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNN 96
+ V + L +
Sbjct: 598 PNIS-IDLSYVCPYIEAGMYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L L I SN+ + E I + LD+ N V E + L +
Sbjct: 567 SLTQLQIGSNDIRK-VNEK---ITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622
Query: 72 FTGKLPRPIVSSCLSLD 88
+ C +LD
Sbjct: 623 TQD------IRGCDALD 633
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 3e-49
Identities = 79/455 (17%), Positives = 145/455 (31%), Gaps = 60/455 (13%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQ---KLIYLDMSKNNFEGNIPYSVGEMKELTILDLS 68
L HLD+SSN +L ++ Q + LD+S N P + E++ L L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLR 208
Query: 69 RNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQ---LFPNYMNLTDLGSLYLDNNHFS--- 122
N + + + + L+ L F + + L L +L ++ +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 123 ---GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNN 179
+ D T + ++ + + L + ++L +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKS 326
Query: 180 LKSLEFIDLSENSLISLSNLSFVKHIYLQNNAI--KGLIPIALLRSSTLLTLDLRDNKLF 237
LK L F + S +L ++ + L N + KG + +++L LDL N +
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 238 GRIPHQINERSNLHVLLLRGNYLQGRIPNQ-LCQLRKLSIMDLSRNRLNGPIPSCLGNVP 296
+ L L + + L+ LR L +D+S
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-- 443
Query: 297 FWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFI 356
SSLE L + F
Sbjct: 444 --------------------------LSSLE-----VLKMAGNSFQE----NFLPDIFTE 468
Query: 357 GSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
NL + LDLS + P L +++ LN+S+N + L ++ LD
Sbjct: 469 LRNLTF---LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525
Query: 417 SRNKLSGQIPPQLTEL-NFLSNFNVSYNNLSGPIP 450
S N + +L + L+ N++ N+ +
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 2e-45
Identities = 86/485 (17%), Positives = 150/485 (30%), Gaps = 70/485 (14%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L L ++ N L L + N + +G +K L L+++ N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLG----SLYLDNNHFSGKMTD 127
S+ +L+ LDLS+N + L + SL L N + +
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQP 194
Query: 128 GLLSSTLLRVLNVSNNMLSGDIPHWI----------------------------GNFSVL 159
G L L + NN S ++ L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 160 SVLLMSENYLQ------GNIPVQLNNLKSLEFIDLSENSLISLSNLSF---VKHIYLQNN 210
L + E L +I N L ++ L ++ + + S+ +H+ L N
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 211 AIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQ--GRIPNQL 268
+ L L + F + +L L L N L G
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-----PSLEFLDLSRNGLSFKGCCSQSD 369
Query: 269 CQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFY-ANNVDSPVAYYNSSLE 327
L +DLS N + + LG + E ++ ++ ++ L
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGL----------EQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 328 LQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKI-GQLQN 386
L+ + L F S+L L ++GN F I +L+N
Sbjct: 420 LRNLIYLDISHTH-----TRVAFNGIFNGLSSLEV---LKMAGNSFQENFLPDIFTELRN 471
Query: 387 IRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
+ L+LS L P +F++L ++ L++S N LN L + S N++
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 447 GPIPD 451
Sbjct: 532 TSKKQ 536
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-44
Identities = 74/459 (16%), Positives = 141/459 (30%), Gaps = 47/459 (10%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
++LD+S N + F +L LD+S+ + + + L+ L L+ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF-SGKMTDGLLS 131
L S SL L N +L L L + +N S K+ + +
Sbjct: 89 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLL----MSENYLQGNIPVQLNNLKSLEFID 187
T L L++S+N + + + +L +S N + P + L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206
Query: 188 LSENSL------ISLSNLSFVKHIYLQNNAIKGLIPIAL--------LRSSTLLTLDLRD 233
L N + L+ ++ L + + L + T+ L
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 234 NKLF-GRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCL 292
+ I N +N+ L ++ ++L + L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKL 324
Query: 293 GNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRY 352
++ F ++ SLE L ++ F
Sbjct: 325 KSLK---------RLTFTSNKGGNAFSEVDLPSLE-----FLDLSRNGL---SFKGCCSQ 367
Query: 353 EFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPES-FSNLKMI 411
F ++L Y LDLS N + L+ + L+ ++ L S F +L+ +
Sbjct: 368 SDFGTTSLKY---LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 412 ESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
LD+S L+ L ++ N+
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 3e-43
Identities = 91/457 (19%), Positives = 151/457 (33%), Gaps = 52/457 (11%)
Query: 17 DISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKL 76
NF K+P+NL LD+S N YS EL +LDLSR +
Sbjct: 13 QCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-I 67
Query: 77 PRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLR 136
S L L L+ N + L+ L L + + + L+
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 137 VLNVSNNML-SGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF----IDLSEN 191
LNV++N++ S +P + N + L L +S N +Q L L + +DLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 192 SLISLSNLSF----VKHIYLQNNAIKGLIP---IALLRSSTLLTLDLRDNKLFGRIPHQI 244
+ + +F + + L+NN + I L + L L + + G +
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 245 NER----SNLHVLLLRGNYL---QGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPF 297
NL + R YL I + L +S L +
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--- 304
Query: 298 WREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG 357
N +L+L+ L F ++ N +
Sbjct: 305 -------GWQHLELVNCKFGQF----PTLKLKSLKRLTFTSNK-------GGNAFSEVDL 346
Query: 358 SNLNYMAGLDLSGN--EFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLD 415
+L + LDLS N F G +++ L+LS N + + +F L+ +E LD
Sbjct: 347 PSLEF---LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402
Query: 416 LSRNKLSGQIPPQ-LTELNFLSNFNVSYNNLSGPIPD 451
+ L L L ++S+ +
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 9e-38
Identities = 81/412 (19%), Positives = 141/412 (34%), Gaps = 32/412 (7%)
Query: 63 TILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFS 122
NF K+P + S LDLS N ++ + +L L L
Sbjct: 10 ITYQCMELNFY-KIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 123 GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKS 182
S + L L ++ N + S L L+ E L + +LK+
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 183 LEFIDLSENSLISL------SNLSFVKHIYLQNNAIKGLIPIALLR----SSTLLTLDLR 232
L+ ++++ N + S SNL+ ++H+ L +N I+ + L L+LDL
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ-LRKLSIMDLSRNRLNG----- 286
N + I + LH L LR N+ + Q L L + L
Sbjct: 186 LNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 287 -PIPSCLGNVPFWREATDDDSS-EFFYANNVDSPVAYYN-SSLEL---QLPVELHFRQDQ 340
S L + + +++ + +D N SS L + F +
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304
Query: 341 QVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLS-- 398
+ ++ F L + L + N+ L ++ L+LS N LS
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFK 362
Query: 399 GAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
G +S ++ LDLS N + + L L + + ++NL
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 1e-35
Identities = 54/289 (18%), Positives = 96/289 (33%), Gaps = 20/289 (6%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+ + S +L++ F + +K LT N
Sbjct: 283 NVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNN--NFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGL 129
+ SL++LDLS N +F G + T L L L N M+
Sbjct: 340 AFSE------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392
Query: 130 LSSTLLRVLNVSNNMLSGDIPHWI-GNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDL 188
L L L+ ++ L + + L L +S + + N L SLE + +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 189 SENSLI------SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242
+ NS + L + + L ++ L P A S+L L++ N F
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512
Query: 243 QINERSNLHVLLLRGNYLQGRIPNQLCQL-RKLSIMDLSRNRLNGPIPS 290
++L VL N++ +L L+ ++L++N
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 1e-29
Identities = 65/356 (18%), Positives = 121/356 (33%), Gaps = 26/356 (7%)
Query: 103 PNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVL 162
P + ++ ++ N + + D L S + L++S N L + +F L VL
Sbjct: 2 PCVEVVPNITYQCMELNFYK--IPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 163 LMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIP 217
+S +Q +L L + L+ N + SL S LS ++ + + L
Sbjct: 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117
Query: 218 IALLRSSTLLTLDLRDNKL-FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSI 276
+ TL L++ N + ++P + +NL L L N +Q L L ++ +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 277 M----DLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPV 332
+ DLS N +N P + + NN DS L
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRL---------HKLTLRNNFDSLNVMKTCIQGLAGLE 228
Query: 333 ELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFS-GEIPWKIGQLQNIRALN 391
+ + K G + L+ ++ +I L N+ + +
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288
Query: 392 LSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSG 447
L + + + FS + L+L K +L L L+ + N
Sbjct: 289 LVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 3/186 (1%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+L HLD +N ++ + + LIYLD+S + + L +L ++ N+
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
F I + +L +LDLS + +L+ L L + +N+F T
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516
Query: 132 STLLRVLNVSNNMLSGDIPHWIGN-FSVLSVLLMSENYLQGNIPVQ--LNNLKSLEFIDL 188
L+VL+ S N + + + S L+ L +++N Q L +K + +
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576
Query: 189 SENSLI 194
+
Sbjct: 577 EVERME 582
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 3e-42
Identities = 61/464 (13%), Positives = 130/464 (28%), Gaps = 90/464 (19%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
KL+ + +++ F+ + N S +K+LT ++L
Sbjct: 449 KLQIIYFANSPFTYDNIA------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYG---------QLFPNYMNLTDLGSLYLDNNHFS 122
+LP + L L+++ N +L + + Y+ N+
Sbjct: 503 NMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561
Query: 123 GKMTDGLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQL-NNL 180
L L +L+ +N + G L+ L + N ++ IP
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFT 618
Query: 181 KSLEFIDLSENSL------ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDN 234
+E + S N L + ++ + + N I +
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI----- 673
Query: 235 KLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294
N + L N +Q +S + LS N + + L
Sbjct: 674 --------------NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719
Query: 295 VPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354
+ + + +N L L +
Sbjct: 720 KD----------GNYKNTYLLTTIDLRFNK-LT-SLSDDFRA------------------ 749
Query: 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNL------LSGAIPESFSNL 408
+ L Y++ +D+S N FS P + ++A + + + P +
Sbjct: 750 ---TTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805
Query: 409 KMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNL-SGPIPD 451
+ L + N + + +L L +++ N S +
Sbjct: 806 PSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTS 846
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 7e-41
Identities = 78/493 (15%), Positives = 148/493 (30%), Gaps = 99/493 (20%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
++ L ++ G++P+ +G +L L ++ + E + + ++
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNN----------------------------NFYGQLFP 103
+ + L+ DL + N +
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442
Query: 104 NYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLL 163
LT L +Y N+ F+ + N + N L+ +
Sbjct: 443 AIQRLTKLQIIYFANSPFT-----YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 164 MSENYLQGNIPVQLNNLKSLEFIDLSENSLIS--------------LSNLSFVKHIYLQN 209
+ +P L +L L+ ++++ N IS ++ Y+
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557
Query: 210 NAIKGLIPIALLRSSTLLT-LDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQL 268
N ++ A L+ L LD NK+ R L L L N ++ IP
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDF 614
Query: 269 CQ-LRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLE 327
C ++ + S N+L IP+ S
Sbjct: 615 CAFTDQVEGLGFSHNKLKY-IPNIFNA----------------------------KSVYV 645
Query: 328 LQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNI 387
+ + F ++ + + G N + + LS NE I
Sbjct: 646 MG---SVDFSYNKIGSEGRNISCSMDDYKGINAST---VTLSYNEIQKFPTELFATGSPI 699
Query: 388 RALNLSNNLLS-------GAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNF--LSNF 438
+ LSNNL++ ++ N ++ ++DL NKL+ + LSN
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNM 758
Query: 439 NVSYNNLSGPIPD 451
+VSYN S P
Sbjct: 759 DVSYNCFSS-FPT 770
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 1e-39
Identities = 66/473 (13%), Positives = 150/473 (31%), Gaps = 60/473 (12%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
L L I+ N + ++ I + ++ N I ++ +
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL--TNRITFISKAIQRLT 448
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
+L I+ + + FT + + + + Y ++ NL DL + L N
Sbjct: 449 KLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502
Query: 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNL 180
++ D L L+ LN++ N + +
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGIS---------------AAQLKADWTRLADDEDTG 547
Query: 181 KSLEFIDLSENSL------ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDN 234
++ + N+L SL + + + +N ++ L L L L N
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK--LTDLKLDYN 605
Query: 235 KLFGRIPHQI-NERSNLHVLLLRGNYLQGRIPN--QLCQLRKLSIMDLSRNRLNGPIPSC 291
++ IP + L N L+ IPN + + +D S N++ +
Sbjct: 606 QI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663
Query: 292 LGNVPFWREATDDDSSEFFYANN----VDSPVAYYNSSLELQLPVELHFRQDQQVGAKFV 347
++ ++ +S + N + + S + + L + +
Sbjct: 664 SCSMDDYKGIN---ASTVTLSYNEIQKFPTELFATGSPIST---IILSNNLMTSIPENSL 717
Query: 348 TKNRYEFFIGSNLNYMAGLDLSGNEFSGEIP--WKIGQLQNIRALNLSNNLLSGAIPESF 405
+ N + +DL N+ + + ++ L + +++S N S P
Sbjct: 718 KPKDGNY---KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772
Query: 406 SNLKMIESLDLSR------NKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDK 452
N +++ + N++ Q P +T L + N++ + +K
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEK 824
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 4e-34
Identities = 57/312 (18%), Positives = 107/312 (34%), Gaps = 39/312 (12%)
Query: 12 KLRHLDISSNNFSGKLPENLGII-FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
K++ + NN P + + KL LD N ++ + G +LT L L N
Sbjct: 549 KIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN 605
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM---NLTDLGSLYLDNNHFSGKMTD 127
+P + ++ L S+N PN ++ +GS+ N + +
Sbjct: 606 QIEE-IPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662
Query: 128 -----GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ-------GNIPV 175
+ +S N + S +S +++S N +
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722
Query: 176 QLNNLKSLEFIDLSENSL------ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTL 229
N L IDL N L + L ++ ++ + N P L SS L
Sbjct: 723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781
Query: 230 DLR------DNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNR 283
+R N++ + P I +L L + N ++ + +L +L I+D++ N
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNP 838
Query: 284 L-NGPIPSCLGN 294
+ + S
Sbjct: 839 NISIDVTSVCPY 850
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 4e-28
Identities = 47/301 (15%), Positives = 93/301 (30%), Gaps = 37/301 (12%)
Query: 12 KLRHLDISSNNFSGKLPE--NLGIIFQKLIYLDMSKNNFEGNIPYSVGE-MKELTILDLS 68
KL LD N L KL L + N E IP ++ L S
Sbjct: 574 KLGLLDCVHNKVR-HLEAFGTN----VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627
Query: 69 RNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQ-----LFPNYMNLTDLGSLYLDNNHFSG 123
N S + +D S N + + + ++ L N
Sbjct: 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687
Query: 124 KMTDGLLSSTLLRVLNVSNNMLS-------GDIPHWIGNFSVLSVLLMSENYLQGNIP-- 174
T+ + + + + +SNN+++ N +L+ + + N L +
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDD 746
Query: 175 VQLNNLKSLEFIDLSEN----------SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSS 224
+ L L +D+S N + L + N I P +
Sbjct: 747 FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806
Query: 225 TLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
+L+ L + N + ++ ++ L++L + N +C + + L ++
Sbjct: 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863
Query: 285 N 285
Sbjct: 864 Q 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 43/357 (12%), Positives = 92/357 (25%), Gaps = 69/357 (19%)
Query: 113 SLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172
+L N + + + S N +M + N ++ L ++ +G
Sbjct: 280 ALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGR 338
Query: 173 IPVQLNNLKSLEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIP------IALL 221
+P + L L+ + +S L + + I+ L
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398
Query: 222 RSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281
S LL + N I + N + I + +L KL I+ +
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFAN 457
Query: 282 NRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQ 341
+ + Y E +
Sbjct: 458 SPFTYDNIAVDWEDANSD----------------------YAKQYEN-EELSW------- 487
Query: 342 VGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG-- 399
SNL + ++L ++P + L +++LN++ N
Sbjct: 488 ----------------SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531
Query: 400 -------AIPESFSNLKMIESLDLSRNKLSG-QIPPQLTELNFLSNFNVSYNNLSGP 448
+ + I+ + N L L ++ L + +N +
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 1e-20
Identities = 34/297 (11%), Positives = 85/297 (28%), Gaps = 27/297 (9%)
Query: 179 NLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFG 238
+ K+ + + N+ I N +F K + + + L + + L L G
Sbjct: 282 DGKNWRYYSGTINNTIHSLNWNFNKEL----DMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337
Query: 239 RIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFW 298
R+P I + + L VL + + + + ++R+ +
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397
Query: 299 REATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKF----------VT 348
+D + SL+ + + +
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKD-TQIGNLTNRITFISKAIQRLTKLQIIYFA 456
Query: 349 KNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNL 408
+ + + + + + L+++ + L N +P+ +L
Sbjct: 457 NSPFTYDNIAVDWED--ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514
Query: 409 KMIESLDLSRNKLSG---------QIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFA 456
++SL+++ N+ ++ + F + YNNL P
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQ 570
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 1e-19
Identities = 35/212 (16%), Positives = 66/212 (31%), Gaps = 30/212 (14%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFE-------GNIP 53
I + + K + +S N P L + + +S N
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721
Query: 54 YSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGS 113
+ LT +DL N T ++ L +D+S N F +N + L +
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKA 780
Query: 114 LYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI 173
+ + + N + P I L L + N ++ +
Sbjct: 781 FGIRHQ------------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KV 821
Query: 174 PVQLNNLKSLEFIDLSENSLISLSNLSFVKHI 205
+L L +D+++N IS+ S +I
Sbjct: 822 DEKL--TPQLYILDIADNPNISIDVTSVCPYI 851
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 2e-41
Identities = 76/451 (16%), Positives = 142/451 (31%), Gaps = 30/451 (6%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
L+ S N L +LD+++ + L L L+ N
Sbjct: 35 TECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM-NLTDLGSLYLDNNHFSGKMTDGLLS 131
+ +S +L L + + N L SLYL +NH S
Sbjct: 94 IF-MAETALSGPKALKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ-GNIPVQLNNLKSLEFIDLSE 190
+ L+VL+ NN + + + + L ++ N I + + ++
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211
Query: 191 NSL-------ISLSNLSFVKHIYLQNNAIKGLIPIAL--LRSSTLLTLDLRDNKLFGRIP 241
+ S + + ++ + + P L ++ +++L+ + F
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271
Query: 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREA 301
+ + S L L L +L +P+ L L L + LS N+ N P
Sbjct: 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330
Query: 302 TDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN 361
N + L+ EL D + + S+L
Sbjct: 331 -------SIKGNTKRLELG-TGCLENLENLRELDLSHDD---IETSDCCNLQLRNLSHLQ 379
Query: 362 YMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPES-FSNLKMIESLDLSRNK 420
L+LS NE + + L+L+ L +S F NL +++ L+LS +
Sbjct: 380 S---LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 421 LSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
L L L + N+ N+
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 6e-41
Identities = 85/456 (18%), Positives = 151/456 (33%), Gaps = 35/456 (7%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L LD++ + E+ +L L ++ N ++ K L L +
Sbjct: 58 NLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGL-- 129
+ + + + +L+ L L +N+ P L L NN + +
Sbjct: 117 ISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175
Query: 130 LSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQL--NNLKSLEFID 187
L LN++ N ++G I + +V L I L + ++SL
Sbjct: 176 LQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234
Query: 188 LSENSLISLSNLSF-------VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRI 240
+ +S F V+ I LQ + + S L LDL L +
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SEL 293
Query: 241 PHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPI-PSCLGNVPFWR 299
P + S L L+L N + L+ + + N + CL N+ R
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSN 359
E D S + ++ + S L+ L+ + ++ F
Sbjct: 354 EL--DLSHDDIETSDCCNLQLRNLSHLQ-----SLNLS-----YNEPLSLKTEAFKECPQ 401
Query: 360 LNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSR 418
L LDL+ + L ++ LNLS++LL + + F L ++ L+L
Sbjct: 402 LEL---LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 419 NKLSG---QIPPQLTELNFLSNFNVSYNNLSGPIPD 451
N Q L L L +S+ +LS
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 6e-40
Identities = 84/449 (18%), Positives = 168/449 (37%), Gaps = 54/449 (12%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQ-KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
KL+ LD +N E++ + Q + L+++ N+ G I + L+
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGT 212
Query: 71 NFTGKLPRPIVSSCL-SLDWLDLSNNNFYG--QLFPNYMNLTDLGSLYLDNNHFSGKMTD 127
+ + + +S + SL + + + + S+ L ++F ++
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 128 GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFID 187
+ L+ L+++ LS ++P + S L L++S N + + +N SL +
Sbjct: 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 188 LSENSLI------SLSNLSFVKHIYLQNNAIK--GLIPIALLRSSTLLTLDLRDNKLFGR 239
+ N+ L NL ++ + L ++ I+ + L S L +L+L N+
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 240 IPHQINERSNLHVLLLRGNYLQGRIP-NQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFW 298
E L +L L L+ + + L L +++LS + L+ +P
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-- 449
Query: 299 REATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGS 358
+L+ L+ + G F N +
Sbjct: 450 --------------------------ALQ-----HLNLQ-----GNHFPKGNIQKTNSLQ 473
Query: 359 NLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSR 418
L + L LS + S L+ + ++LS+N L+ + E+ S+LK I L+L+
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLAS 532
Query: 419 NKLSGQIPPQLTELNFLSNFNVSYNNLSG 447
N +S +P L L+ N+ N L
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 6e-40
Identities = 92/456 (20%), Positives = 155/456 (33%), Gaps = 36/456 (7%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L+HL S + + L L + N+ ++L +LD N
Sbjct: 106 ALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164
Query: 72 FTGKLPRPIVSSCLSLDWLDLS-NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
L + +SS L L+ N N + P + SL + GL
Sbjct: 165 IHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223
Query: 131 SSTL--LRVLNVSNNMLSGDIPHWIGNFSVLSV--LLMSENYLQGNIPVQLNNLKSLEFI 186
+ST+ L + + P +SV + + ++Y + L+ +
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283
Query: 187 DLSENSLISL----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242
DL+ L L LS +K + L N + L I+ +L L ++ N +
Sbjct: 284 DLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343
Query: 243 QINER-SNLHVLLLRGNYLQ--GRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299
E NL L L + ++ QL L L ++LS N P
Sbjct: 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403
Query: 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG-S 358
+ + L L L+ + + + F G
Sbjct: 404 LL-------DLAFTRL-KVKDAQSPFQNLHLLKVLNLSHSL------LDISSEQLFDGLP 449
Query: 359 NLNYMAGLDLSGNEFSGEIPWKIGQLQN---IRALNLSNNLLSGAIPESFSNLKMIESLD 415
L + L+L GN F K LQ + L LS LS +F++LKM+ +D
Sbjct: 450 ALQH---LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506
Query: 416 LSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
LS N+L+ L+ L + N++ N++S +P
Sbjct: 507 LSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPS 541
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 9e-38
Identities = 70/403 (17%), Positives = 128/403 (31%), Gaps = 55/403 (13%)
Query: 64 ILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG 123
+ ++P + +S + L+ S N + L +L L L
Sbjct: 16 TYNCENLGLN-EIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 124 KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSL 183
D S L L ++ N L + L L + + + L+N K+L
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 184 EFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPIAL--LRSSTLLTLDLRDNKL 236
E + L N + S+ +K + QNNAI L + L+ +T L+L+L N +
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQGRIPNQL--CQLRKLSIMDLSRNRLNGPIPSCLGN 294
I + + L G I L ++ L + P+
Sbjct: 192 -AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 295 VPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354
+ S+E ++ ++ F + F
Sbjct: 251 LC--------------------------EMSVE-----SINLQKHY-----FFNISSNTF 274
Query: 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESL 414
+ + LDL+ S E+P + L ++ L LS N S SN + L
Sbjct: 275 ---HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330
Query: 415 DLSRNKLSGQIPPQ-LTELNFLSNFNVSYNNLSGPIPDKEQFA 456
+ N ++ L L L ++S++++ Q
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-36
Identities = 79/458 (17%), Positives = 148/458 (32%), Gaps = 49/458 (10%)
Query: 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT 73
+ + + + ++P L L+ S N + + LT LDL+R
Sbjct: 15 KTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70
Query: 74 GKLPRPIVSSCLSLDWLDLSNNNFYG---QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
+ S LD L L+ N L L+ S L
Sbjct: 71 W-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK---HLFFIQTGISSIDFIPLH 126
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI--DL 188
+ L L + +N +S L VL N + +++L+ + +L
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186
Query: 189 SENSLISLSNLSF----VKHIYLQNNAIKGLIPIALLRSS--TLLTLDLRDNKL--FGRI 240
+ N + + +F + + +I L S+ +L D
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246
Query: 241 PHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE 300
+ ++ + L+ +Y N L +DL+ L+ +PS L + +
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLK- 304
Query: 301 ATDDDSSEFFYANN----VDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFI 356
+ + N + A SL L + + + +
Sbjct: 305 -------KLVLSANKFENLCQISASNFPSLT-----HLSIKGNTK-----RLELGTGCL- 346
Query: 357 GSNLNYMAGLDLSGN--EFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESL 414
NL + LDLS + E S ++ L ++++LNLS N E+F +E L
Sbjct: 347 -ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 415 DLSRNKLSGQIPP-QLTELNFLSNFNVSYNNLSGPIPD 451
DL+ +L + L+ L N+S++ L
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 6e-21
Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 8/230 (3%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILDLSRN 70
L+ L++S N L +L LD++ + S + L +L+LS +
Sbjct: 377 HLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYG---QLFPNYMNLTDLGSLYLDNNHFSGKMTD 127
+ +L L+L N+F Q + L L L L S
Sbjct: 436 LLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494
Query: 128 GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFID 187
S ++ +++S+N L+ + + + L ++ N++ +P L L I+
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553
Query: 188 LSENSLI-SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
L +N L + SN+ F++ ++ L + L D L
Sbjct: 554 LRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 2/103 (1%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
S + L S + + + +L L +N +S + ++ LD
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161
Query: 418 RNKLSGQIPPQLTELNFLSN--FNVSYNNLSGPIPDKEQFATF 458
N + ++ L +N N++ N+++G P A F
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIE--SLDLSRNKLSG 423
L L N S K + ++ L+ NN + E S+L+ SL+L+ N ++G
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193
Query: 424 QIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATF 458
I P + + N I + +T
Sbjct: 194 -IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 2e-39
Identities = 75/453 (16%), Positives = 137/453 (30%), Gaps = 66/453 (14%)
Query: 12 KLRHLDISSNNFSGKLPE---NLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLS 68
L H+D+S N L Q + LDMS N + I + +L L L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLR 212
Query: 69 RNNFTGKLPRPIVSSCLSLDWLDLSNNNFYG---------QLFPNYMNLTDLGSLYLDNN 119
N + + + + + L L F + ++T L
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID-EFRLTYT 271
Query: 120 HFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNN 179
+ + ++++ + + +F L + L+ + L
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFK-WQSLSIIRCQLKQFPTLDLPF 329
Query: 180 LKSLEFIDLSENSL---ISLSNLSFVKHIYLQNNAIKGLIPIAL--LRSSTLLTLDLRDN 234
LKSL L+ N L + ++ L NA+ + L +++L LDL N
Sbjct: 330 LKSL---TLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
Query: 235 KLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQ-LCQLRKLSIMDLSRNRLNGPIPSCLG 293
+ L L + + L+ L KL +D+S
Sbjct: 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445
Query: 294 NVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYE 353
+ SL L + F
Sbjct: 446 GLT----------------------------SLN-----TLKMAGNS-----FKDNTLSN 467
Query: 354 FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIES 413
F +N + LDLS + L ++ LN+S+N L ++ L + +
Sbjct: 468 VF--ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525
Query: 414 LDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
LD S N++ L+ FN++ N+++
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 6e-36
Identities = 80/484 (16%), Positives = 147/484 (30%), Gaps = 69/484 (14%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L +L ++ N L L + + +G++ L L+++ N
Sbjct: 81 HLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNF----YGQLFPNYMNLTDLGSLYLDNNHFSGKMTD 127
S+ +L +DLS N L N SL + N + D
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQD 198
Query: 128 GLLSSTLLRVLNVSNNMLSGDIPHWIGN----------------------------FSVL 159
L L + N S +I L
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258
Query: 160 SVLLMSENYLQGN-----IPVQLNNLKSLEFIDLSENSLISLSNLSF---VKHIYLQNNA 211
+ + E L V+ + L ++ + L+ S+ L ++ + + +
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ 318
Query: 212 IKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPN--QLC 269
+K + L L +L L NK I + +L L L N L
Sbjct: 319 LKQFPTLDL---PFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373
Query: 270 QLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQ 329
L +DLS N + + + + + ++ V +++ L L+
Sbjct: 374 GTNSLRHLDLSFNGAII-MSANFMGLE--------ELQHLDFQHSTLKRVTEFSAFLSLE 424
Query: 330 LPVELHFRQDQQVGAKFVTKNRYEFFIG-SNLNYMAGLDLSGNEFSGEIPWKI-GQLQNI 387
+ L + F+G ++LN L ++GN F + N+
Sbjct: 425 KLLYLDISYTN------TKIDFDGIFLGLTSLNT---LKMAGNSFKDNTLSNVFANTTNL 475
Query: 388 RALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSG 447
L+LS L F L ++ L++S N L +L LS + S+N +
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
Query: 448 PIPD 451
Sbjct: 536 SKGI 539
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 2e-35
Identities = 73/459 (15%), Positives = 140/459 (30%), Gaps = 46/459 (10%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
+++D+S N + F +L +LD+S+ E + + L+ L L+ N
Sbjct: 34 TKNIDLSFNPLKILKSYSFS-NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS 132
S SL+ L L L L + +N S+
Sbjct: 93 QS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 133 -TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN----IPVQLNNLKSLEFID 187
T L +++S N + + + + +S + + N I Q L +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD-MSLNPIDFIQDQAFQGIKLHELT 210
Query: 188 LSENSLIS------LSNLSFVKHIYLQNNAIKGLIPIALLRSSTL--------LTLDLRD 233
L N S L NL+ + L K + + S + L
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270
Query: 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLG 293
F + + +N+ + L G + + + + K + + R +L L
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328
Query: 294 NVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYE 353
+ S N + L L ++ F Y
Sbjct: 329 FL----------KSLTLTMNKGSIS----FKKVALPSLSYLDLSRNAL---SFSGCCSYS 371
Query: 354 FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPES-FSNLKMIE 412
++L + LDLS N + L+ ++ L+ ++ L S F +L+ +
Sbjct: 372 DLGTNSLRH---LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Query: 413 SLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
LD+S L L+ ++ N+
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-35
Identities = 80/477 (16%), Positives = 144/477 (30%), Gaps = 55/477 (11%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+L+ LD+S + + L L ++ N + P S + L L
Sbjct: 57 ELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM-NLTDLGSLYLDNNHFSG---KMTD 127
L + ++L L++++N + P Y NLT+L + L N+
Sbjct: 116 LAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174
Query: 128 GLLSST-LLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIP-VQLNNLKSLEF 185
L + + L++S N + I L L + N+ NI L NL L
Sbjct: 175 FLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233
Query: 186 IDLSENSLISLSNLSF-------------VKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232
L NL + L + + + + L
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSC- 291
+ + + + L + L+ L L+ L L+ N+ +
Sbjct: 294 GVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSISFKKVA 348
Query: 292 ----------------LGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELH 335
G + T+ N A + ELQ L
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ---HLD 405
Query: 336 FRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNN 395
F+ + + F +L + LD+S + L ++ L ++ N
Sbjct: 406 FQ-----HSTLKRVTEFSAF--LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458
Query: 396 LLSGAIPES-FSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
+ F+N + LDLS+ +L L+ L N+S+NNL
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 5e-34
Identities = 84/426 (19%), Positives = 149/426 (34%), Gaps = 36/426 (8%)
Query: 50 GNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLT 109
G++ + + +T + K+P I SS +DLS N ++ N +
Sbjct: 2 GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPSS---TKNIDLSFNPLKILKSYSFSNFS 56
Query: 110 DLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169
+L L L L L ++ N + P + L L+ E L
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116
Query: 170 QGNIPVQLNNLKSLEFIDLSENSLISL------SNLSFVKHIYLQNNAIKGLIPIAL--- 220
+ L +L+ ++++ N + S SNL+ + H+ L N I+ + L
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176
Query: 221 -LRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ-LRKLSIMD 278
L+LD+ N + I Q + LH L LRGN+ I Q L L +
Sbjct: 177 RENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235
Query: 279 LSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYN------------SSL 326
L + D EF D + +
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295
Query: 327 ELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQN 386
++ ++ Q + + + + F +L ++ L L+ N+ S I +K L +
Sbjct: 296 SIKYLEDVPKHFKWQS--LSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPS 351
Query: 387 IRALNLSNNLLSGAIPESFSNLKM--IESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNN 444
+ L+LS N LS + S+S+L + LDLS N + L L + + ++
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410
Query: 445 LSGPIP 450
L
Sbjct: 411 LKRVTE 416
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 8e-33
Identities = 84/458 (18%), Positives = 150/458 (32%), Gaps = 51/458 (11%)
Query: 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTG 74
S K+P+++ +D+S N + YS EL LDLSR
Sbjct: 15 TYQCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70
Query: 75 KLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTL 134
+ L L L+ N ++ LT L +L + + +
Sbjct: 71 -IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129
Query: 135 LRVLNVSNNMLSG-DIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF----IDLS 189
L+ LNV++N + +P + N + L + +S NY+Q L L+ +D+S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189
Query: 190 ENSLISLSNLSFV----KHIYLQNNAIKGLIPIALLRS-STLLTLDLRDNKLFGRIPHQI 244
N + + + +F + L+ N I L++ + L L + +I
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249
Query: 245 NERSNLH--------VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP 296
E S + L + L +S M L+ + L +VP
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-----LEDVP 304
Query: 297 FWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFI 356
+ + L+ L ++ ++
Sbjct: 305 KHFKWQSLSIIR----CQLKQFPTLDLPFLK-----SLTLTMNK-------GSISFKKVA 348
Query: 357 GSNLNYMAGLDLSGNEFS--GEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESL 414
+L+Y LDLS N S G + ++R L+LS N + +F L+ ++ L
Sbjct: 349 LPSLSY---LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404
Query: 415 DLSRNKLSGQIPPQ-LTELNFLSNFNVSYNNLSGPIPD 451
D + L L L ++SY N
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 9e-23
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 6/212 (2%)
Query: 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTIL 65
+ + LRHLD+S N + N ++L +LD + + +S +++L L
Sbjct: 372 DLGTNSLRHLDLSFNGAII-MSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429
Query: 66 DLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM-NLTDLGSLYLDNNHFSGK 124
D+S N I SL+ L ++ N+F N N T+L L L
Sbjct: 430 DISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488
Query: 125 MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLE 184
+ L++LN+S+N L LS L S N ++ + + + KSL
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548
Query: 185 FIDLSENSLISLSNLS-FVKHIYLQNNAIKGL 215
F +L+ NS+ + F++ + Q + +
Sbjct: 549 FFNLTNNSVACICEHQKFLQWVKEQKQFLVNV 580
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 5/101 (4%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPE-SFSNLKMIESLDLSRNKLSGQ 424
LD+S N I + Q + L L N S I + NL + L + +
Sbjct: 186 LDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244
Query: 425 IP---PQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCS 462
+ + + L + + L+ + F +
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-34
Identities = 79/476 (16%), Positives = 157/476 (32%), Gaps = 40/476 (8%)
Query: 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDL 67
++L+ L++ S + + L LD+ + P + + L L L
Sbjct: 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL 104
Query: 68 SRNNFTGK-LPRPIVSSCLSLDWLDLSNNNFYG-QLFPNYMNLTDLGSLYLDNNHFSGKM 125
+ L + +L LDLS N L P++ L L S+ +N
Sbjct: 105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164
Query: 126 TDGL--LSSTLLRVLNVSNNMLSGDIP-HWIGNFSVLSVLLMSENYLQGN---------- 172
L L L +++ N L + W + +++ + GN
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224
Query: 173 -------IPVQLNNLKSLEFIDLSENSLISLSNLSF-------VKHIYLQNNAIKGLIPI 218
L + +++ +F V+H+ L + + L
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284
Query: 219 ALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMD 278
L L+L NK+ NL VL L N L + L K++ +D
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 279 LSRNRLNGPIPSCLGNVPFWRE--ATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHF 336
L +N + + + D+ + + ++ N + L +++
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP---KINL 401
Query: 337 RQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSG-EIPWKIGQLQNIRALNLSNN 395
+ ++ +N + + ++ L L+ N FS + ++ L L N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Query: 396 LLSGAI-----PESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
+L A + F L ++ L L+ N L+ P + L L +++ N L+
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-30
Identities = 92/480 (19%), Positives = 153/480 (31%), Gaps = 49/480 (10%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNI--PYSVGEMKELTILDLSR 69
LR LD+ S+ L + L L + + +K LT LDLS+
Sbjct: 74 NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132
Query: 70 NNFTGKLPRPIVSSCLSLDWLDLSNNNF---YGQLFPNYMNLTDLGSLYLDNNHFSGKMT 126
N P SL +D S+N T L L N +++
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSLAANSLYSRVS 191
Query: 127 DGLLSS------TLLRVLNVSNNMLSGDIP------------HWIGNFSVLSVLLMSENY 168
+L +L+VS N + DI + + +
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251
Query: 169 LQGNIPVQLNNLK--SLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALL 221
++ L S+ +DLS + SL L +K + L N I + A
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311
Query: 222 RSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281
L L+L N L + + L+ N++ L KL +DL
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371
Query: 282 NRLNG-PIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQ 340
N L + ++ AN + + L + + Q
Sbjct: 372 NALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431
Query: 341 QVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSG----EIPWKI-GQLQNIRALNLSNN 395
+ + + S + L L N E+ W + L +++ L L++N
Sbjct: 432 ILNQNRFSSCSGDQTP-SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Query: 396 LLSGAIPESFSNLKMIESLDLSRNKLS----GQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
L+ P FS+L + L L+ N+L+ +P L L ++S N L P PD
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL------DISRNQLLAPNPD 544
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 5e-27
Identities = 83/480 (17%), Positives = 145/480 (30%), Gaps = 56/480 (11%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNI-PYSVGEMKELTILDLSRN 70
L +S N + + ++L L++ I + + L ILDL +
Sbjct: 25 TTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKMTDG 128
L L L L + + NL L L L N
Sbjct: 84 KIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142
Query: 129 LLSS-TLLRVLNVSNNMLSGDIPHWIGNFSV--LSVLLMSENYLQGNIPVQLNNL----- 180
L+ ++ S+N + H + LS ++ N L + V
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 181 -KSLEFIDLSENSL-----------------ISLSNLSFVKHIYLQNNAIKGLIPIAL-- 220
LE +D+S N SL + + IK
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 221 LRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLS 280
L S++ LDL +F +L VL L N + L L +++LS
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 281 RNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQ 340
N L S +P + + + L+ L R +
Sbjct: 323 YNLLGELYSSNFYGLP---------KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373
Query: 341 QVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEF--------SGEIPWKIGQLQNIRALNL 392
F+ F G+ L + ++L+ N + +I + + ++ +++ L L
Sbjct: 374 LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433
Query: 393 SNNLLSGAIPES-FSNLKMIESLDLSRNKLSGQIPPQLTELNF-----LSNFNVSYNNLS 446
+ N S + S +E L L N L +L F L +++N L+
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 80/399 (20%), Positives = 137/399 (34%), Gaps = 47/399 (11%)
Query: 64 ILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG 123
I N T ++P+ + + + L LS N ++ L L L L + +
Sbjct: 8 IAFYRFCNLT-QVPQVL----NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62
Query: 124 KMTDGLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI--PVQLNNL 180
+ + LR+L++ ++ + P L L + L + NL
Sbjct: 63 TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122
Query: 181 KSLEFIDLSENSLISL------SNLSFVKHIYLQNNAIKGLIPIAL--LRSSTLLTLDLR 232
K+L +DLS+N + SL L+ +K I +N I + L L+ TL L
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCL 292
N L+ R+ + N + L I+D+S N I
Sbjct: 183 ANSLYSRVSVDWGKCMNPF------------------RNMVLEILDVSGNGWTVDITGNF 224
Query: 293 GNVPFWREATDDDSSE-----FFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFV 347
N +A + F +N+ P + L L
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-----VF 279
Query: 348 TKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSN 407
+ N F +L L+L+ N+ + L N++ LNLS NLL +F
Sbjct: 280 SLNSRVFETLKDLKV---LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336
Query: 408 LKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
L + +DL +N ++ L L ++ N L+
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-23
Identities = 77/466 (16%), Positives = 149/466 (31%), Gaps = 66/466 (14%)
Query: 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT 73
R N + ++P+ L L +S N S +++L +L+L
Sbjct: 7 RIAFYRFCNLT-QVPQVL----NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61
Query: 74 GKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKM--TDGL 129
+ + + +L LDL ++ L L L L S +
Sbjct: 62 LTIDKEAFRNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119
Query: 130 LSSTLLRVLNVSNNMLSGDIPHW-IGNFSVLSVLLMSENYLQGNIPVQLNNL--KSLEFI 186
+ L L++S N + H G + L + S N + +L L K+L F
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179
Query: 187 DLSENSLISLSNLSFV------KHIYLQ-----------------NNAIKGLIPIALLRS 223
L+ NSL S ++ + +++ L+ +NAI +L+ +
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239
Query: 224 STLLTLDLRDNKLFGRIPHQIN--ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281
++ + + + RS++ L L ++ L+ L +++L+
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299
Query: 282 NRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQ 341
N++N + + N + Y ++ L + +
Sbjct: 300 NKINKIADEAFYGLDNLQVLN-------LSYNLLGE--LYSSNFYGLPKVAYIDLQ---- 346
Query: 342 VGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAI 401
F L LDL N + I + +I + LS N L
Sbjct: 347 -KNHIAIIQDQTFKFLEKLQT---LDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLP 397
Query: 402 PESFSNLKMIESLDLSRNKLSG-QIPPQLTELNFLSNFNVSYNNLS 446
+ + + LS N+L I L + L ++ N S
Sbjct: 398 KINLTA----NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 3e-21
Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 28/286 (9%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L+ L+++ N + K+ + L L++S N + + ++ +DL +N+
Sbjct: 291 DLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
+ L LDL +N + + ++L N + L+
Sbjct: 350 IA-IIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-TLPKINLT 402
Query: 132 STLLRVLNVSNNMLSG-DIPHWIGNFSVLSVLLMSENYLQGNIPVQL-NNLKSLEFIDLS 189
++++S N L DI +++ L +L++++N Q + SLE + L
Sbjct: 403 ---ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459
Query: 190 ENSL----------ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGR 239
EN L LS ++ +YL +N + L P + L L L N+L
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-V 518
Query: 240 IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
+ H +NL +L + N L P+ LS++D++ N+
Sbjct: 519 LSHNDL-PANLEILDISRNQLLAPNPD---VFVSLSVLDITHNKFI 560
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAI-PESFSNLKMIESLDL 416
LN L LS N L+ ++ L L + I E+F NL + LDL
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80
Query: 417 SRNKLSGQIPPQ-LTELNFLSNFNVSYNNLSGPIPDKEQFA 456
+K+ + P L L + + LS + F
Sbjct: 81 GSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 4e-32
Identities = 72/436 (16%), Positives = 139/436 (31%), Gaps = 44/436 (10%)
Query: 36 QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNN 95
+ ++ ++ + + + LDLS N + + ++ L+ L+LS+N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSN 68
Query: 96 NFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGN 155
Y + +L+ L +L L+NN+ LL + L+ +NN +S +
Sbjct: 69 VLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS--CSR 118
Query: 156 FSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS------NLSFVKHIYLQN 209
+ ++ N + + ++++DL N + +++ + ++H+ LQ
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 210 NAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLC 269
N I + + L TLDL NKL + + + + + LR N L I L
Sbjct: 179 NFIYDVKGQVVFAK--LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234
Query: 270 QLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQ 329
+ L DL N + F V + L Q
Sbjct: 235 FSQNLEHFDLRGNGFH----------------CGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278
Query: 330 LPVELHFRQDQQVGAKFVTKNRYEFF---IGSNLNYMAGLDLSGNEFSGEIPWKIGQLQN 386
E GA F I A L G+E + +
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQAR 337
Query: 387 IRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIP---PQLTELNFLSNFNVSYN 443
R ++ I + + +L+ + L Q+ EL+ V
Sbjct: 338 QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397
Query: 444 NLSGPIPDKEQFATFD 459
L ++
Sbjct: 398 ELQHATEEQSPLQLLR 413
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 2e-20
Identities = 37/293 (12%), Positives = 92/293 (31%), Gaps = 23/293 (7%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
L P+ + L ++NN S ++ + Q + ++ N G
Sbjct: 95 LLVGPS-----IETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR 145
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
+ LDL N + +S +L+ L+L N Y + L +L L +N
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQVVFAKLKTLDLSSNKL 203
Query: 122 SGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIP----VQL 177
+ M S+ + +++ NN L I + L + N +
Sbjct: 204 A-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261
Query: 178 NNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIAL-----LRSSTLLTLDLR 232
++++ + + + + + + + L L+ L +
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321
Query: 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
++ R+ + ++ + + I + + ++ + L+
Sbjct: 322 GSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 2e-19
Identities = 44/282 (15%), Positives = 84/282 (29%), Gaps = 23/282 (8%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
LR LD+++N +L + L + NN + + + L+ N
Sbjct: 81 TLRTLDLNNNYVQ-ELLVG-----PSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNK 131
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN-YMNLTDLGSLYLDNNHFSGKMTDGLL 130
T L + +LDL N F + L L L N +
Sbjct: 132 IT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF 190
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSE 190
+ L+ L++S+N L+ + + + ++ + + N L I L ++LE DL
Sbjct: 191 AK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246
Query: 191 NSLISLSNLSFVKHI----YLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246
N + F + +K L + +
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306
Query: 247 RSNLHVLLLRGNYLQG----RIPNQLCQLRKLSIMDLSRNRL 284
L QG R+ + + +D + +
Sbjct: 307 LIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 6e-17
Identities = 43/299 (14%), Positives = 107/299 (35%), Gaps = 59/299 (19%)
Query: 153 IGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL-----SNLSFVKHIYL 207
N + + ++++ L+ + + +++ +DLS N L + + + ++ + L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 208 QNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQ 267
+N + + + L + L TLDL +N + ++ ++ L N + ++
Sbjct: 66 SSNVLYETLDLESLST--LRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSR 118
Query: 268 LCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLE 327
+ + L+ N++ G ++
Sbjct: 119 GQGKKNI---YLANNKITMLRDLDEGCRS----------------------------RVQ 147
Query: 328 LQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNI 387
L + ++ T N E ++ + + L+L N ++ ++ +
Sbjct: 148 -----YLDLKLNE-----IDTVNFAELA--ASSDTLEHLNLQYNFIY-DVKGQV-VFAKL 193
Query: 388 RALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
+ L+LS+N L+ + F + + + L NKL I L L +F++ N
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 32/239 (13%), Positives = 68/239 (28%), Gaps = 7/239 (2%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
KL+ LD+SSN + + + ++ + N I ++ + L DL N
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248
Query: 72 FTGKLPRPIVSSCLSLDWLDL-SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGL- 129
F R S + + + GQ T D L
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308
Query: 130 -LSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDL 188
L +L+ + + N + + + + I ++ ++
Sbjct: 309 ALKRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367
Query: 189 SENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER 247
+ +L + H L + + I L ++ + + R E+
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 7e-13
Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 12/169 (7%)
Query: 130 LSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLS 189
+ ++ V+++ L + + + L +S N L L LE ++LS
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 190 EN---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246
N + L +LS ++ + L NN ++ L+ ++ TL +N + R+
Sbjct: 67 SNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNI-SRVSCSRG- 119
Query: 247 RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG-PIPSCLGN 294
+ L N + ++ +DL N ++ +
Sbjct: 120 -QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 356 IGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLD 415
I N N ++ + + N++ L+LS N LS + +E L+
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 416 LSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
LS N L L L+ L +++ N +
Sbjct: 65 LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 15/70 (21%), Positives = 26/70 (37%)
Query: 381 IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNV 440
+ ++++ L A+ + ++ LDLS N LS L L N+
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 441 SYNNLSGPIP 450
S N L +
Sbjct: 66 SSNVLYETLD 75
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 4e-29
Identities = 80/417 (19%), Positives = 144/417 (34%), Gaps = 33/417 (7%)
Query: 63 TILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFS 122
NF K+P + S LDLS N ++ + +L L L
Sbjct: 10 ITYQCMELNFY-KIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 123 GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKS 182
S + L L ++ N + S L L+ E L + +LK+
Sbjct: 66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 183 LEFIDLSENSLISL------SNLSFVKHIYLQNNAIKGLIPIALLR----SSTLLTLDLR 232
L+ ++++ N + S SNL+ ++H+ L +N I+ + L L+LDL
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ-LRKLSIMDL------SRNRLN 285
N + I + LH L LR N+ + Q L L + L + L
Sbjct: 186 LNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 286 GPIPSCLGNVPFWREATDDDSSEFFYANNVDS-----PVAYYNSSLELQLPVELHFRQDQ 340
S L + + +Y +++ S + + + F +
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304
Query: 341 QVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLS-- 398
+ ++ F L + L + N+ L ++ L+LS N LS
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFK 362
Query: 399 GAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQF 455
G +S ++ LDLS N + + L L + + ++NL + + F
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVF 417
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-27
Identities = 90/458 (19%), Positives = 155/458 (33%), Gaps = 54/458 (11%)
Query: 17 DISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKL 76
NF K+P+N + LD+S N YS EL +LDLSR +
Sbjct: 13 QCMELNFY-KIPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67
Query: 77 PRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLR 136
S L L L+ N + L+ L L + + + L+
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 137 VLNVSNNML-SGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF----IDLSEN 191
LNV++N++ S +P + N + L L +S N +Q L L + +DLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 192 SLISLSNLSF----VKHIYLQNNAIKGLIP---IALLRSSTLLTLDLRDNKLFGRIPH-- 242
+ + +F + + L+NN + I L + L L + + G +
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247
Query: 243 --QINERSNLHVLLLRGNYLQG---RIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPF 297
+ NL + R YL I + L +S L + + + +
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-----VKDFSY 302
Query: 298 WREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG 357
+ SL+ L F ++ N +
Sbjct: 303 NFGWQHLELVN----CKFGQFPTLKLKSLK-----RLTFTSNK-------GGNAFSEVDL 346
Query: 358 SNLNYMAGLDLSGNE--FSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLD 415
+L + LDLS N F G +++ L+LS N + + +F L+ +E LD
Sbjct: 347 PSLEF---LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 402
Query: 416 LSRNKLSGQIPPQ--LTELNFLSNFNVSYNNLSGPIPD 451
+ L Q+ L L ++S+ +
Sbjct: 403 FQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 4e-26
Identities = 90/481 (18%), Positives = 149/481 (30%), Gaps = 96/481 (19%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L L ++ N L L L + N + +G +K L L+++ N
Sbjct: 77 HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNF---YGQLFPNYMNLTDLG-SLYLDNNHFSGKMTD 127
S+ +L+ LDLS+N Y + L SL L N + +
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194
Query: 128 GLLSSTLLRVLNVSNNMLSGDIPHWI----------------------------GNFSVL 159
G L L + NN S ++ L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 160 SVLLMSENYLQGN------IPVQLNNLKSLEFIDLSENSLISLSNLSFV---KHIYLQNN 210
L + E L I N L ++ L ++ + + S+ +H+ L N
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 211 AIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQ--GRIPNQL 268
+ L +L L NK G +++ +L L L N L G
Sbjct: 315 KFGQFPTLKL---KSLKRLTFTSNKG-GNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSD 369
Query: 269 CQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLEL 328
L +DLS N + + S + LE
Sbjct: 370 FGTTSLKYLDLSFNGVIT-MSSNFLGLE----------------------------QLE- 399
Query: 329 QLPVELHFRQDQQVGAKFVTKNRYEFFIG-SNLNYMAGLDLSGNEFSGEIPWKIGQLQNI 387
L F+ + + + F+ NL Y LD+S L ++
Sbjct: 400 ----HLDFQ-----HSNLKQMSEFSVFLSLRNLIY---LDISHTHTRVAFNGIFNGLSSL 447
Query: 388 RALNLSNNLLSGAI-PESFSNLKMIESLDLSRNKLSGQIPPQ-LTELNFLSNFNVSYNNL 445
L ++ N P+ F+ L+ + LDLS+ +L Q+ P L+ L N++ N L
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQL 506
Query: 446 S 446
Sbjct: 507 K 507
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 4e-21
Identities = 56/239 (23%), Positives = 95/239 (39%), Gaps = 15/239 (6%)
Query: 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTIL 65
+ +HL++ + F P + + L L + N G +S ++ L L
Sbjct: 299 DFSYNFGWQHLELVNCKFGQ-FPT---LKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFL 352
Query: 66 DLSRNNFTGK-LPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK 124
DLSRN + K SL +LDLS N + N++ L L L +++
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 125 MTDGLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKS 182
+ S L L++S+ S L VL M+ N Q N L++
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 183 LEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
L F+DLS+ L LS +F ++ + + +N +K + R ++L + L N
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 5e-21
Identities = 47/292 (16%), Positives = 94/292 (32%), Gaps = 22/292 (7%)
Query: 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYS-VGEMKELT 63
L + ++ ++ +L + + E +S + L
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310
Query: 64 ILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG 123
+++ F SL L ++N + ++L L L L N S
Sbjct: 311 LVNCKFGQFPT-------LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSF 361
Query: 124 KMTDGLLSSTL--LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPV-QLNNL 180
K L+ L++S N + + L L + L+ +L
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 181 KSLEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPIALLRS-STLLTLDLRDN 234
++L ++D+S N F ++ + + N+ + + L LDL
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 235 KLFGRIPHQI-NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
+L ++ N S+L VL + N L+ +L L + L N +
Sbjct: 481 QL-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 5e-20
Identities = 48/296 (16%), Positives = 99/296 (33%), Gaps = 21/296 (7%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENL--GIIFQKLIYLDMSKNNFEGN-IPYSVG 57
+ L + +L + + K ++ G+ + ++ ++ + I
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279
Query: 58 EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117
+ ++ L L+ ++ F + L L L
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFT 333
Query: 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLS--GDIPHWIGNFSVLSVLLMSENYLQGNIPV 175
+N ++ L S L L++S N LS G + L L +S N + +
Sbjct: 334 SNKGGNAFSEVDLPS--LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS 390
Query: 176 QLNNLKSLEFIDLSENSLISLS------NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTL 229
L+ LE +D ++L +S +L + ++ + + + S+L L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 230 DLRDNKLFGRIPHQI-NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
+ N I E NL L L L+ P L L +++++ N+L
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 6e-18
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 16/219 (7%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKN--NFEGNIPYSVGEM 59
+ P K L+ L +SN + L +LD+S+N +F+G S
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLD 117
L LDLS N + L+ LD ++N Q+ + +L +L L +
Sbjct: 373 TSLKYLDLSFNGVI-TMSSNF-LGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDIS 429
Query: 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWI-GNFSVLSVLLMSENYLQGNIPVQ 176
+ H + L VL ++ N + I L+ L +S+ L+ P
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 177 LNNLKSLEFIDLSENSLISL-----SNLSFVKHIYLQNN 210
N+L SL+ ++++ N L S+ L+ ++ I+L N
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 2/141 (1%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+L HLD +N ++ + + LIYLD+S + + L +L ++ N+
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN-YMNLTDLGSLYLDNNHFSGKMTDGLL 130
F I + +L +LDLS QL P + +L+ L L + +N
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515
Query: 131 SSTLLRVLNVSNNMLSGDIPH 151
T L+ + + N P
Sbjct: 516 RLTSLQKIWLHTNPWDCSCPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 366 LDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424
L ++GN F I +L+N+ L+LS L P +F++L ++ L+++ N+L
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Query: 425 IPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATF 458
L L + N P + + +
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 6e-28
Identities = 77/439 (17%), Positives = 143/439 (32%), Gaps = 29/439 (6%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L+ L + S+ + + + L +LD+S N+ G + L L+L N
Sbjct: 51 NLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY-MNLTDLGSLYLDNNHFSGKMTDGLL 130
+ + + +L L + N + ++ LT L L + + L
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSE 190
S + L + + + + + S + L + + L L + +
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229
Query: 191 NSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNL 250
L++ SF + + L I L + + D ++ E +
Sbjct: 230 FRGSVLTDESFNELLKLLRY-ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288
Query: 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFF 310
L + YL + L K+ + + +++ S ++ S EF
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK---------SLEFL 339
Query: 311 Y-ANNVDSPVAYYNSSLELQLP--VELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLD 367
+ N+ NS+ + P L Q+ + + K NL LD
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH---LRSMQKTGEILLTLKNLTS---LD 393
Query: 368 LSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPP 427
+S N F +P + +R LNLS+ + L E LD+S N L
Sbjct: 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL---EVLDVSNNNLD-SFSL 448
Query: 428 QLTELNFLSNFNVSYNNLS 446
L L L +S N L
Sbjct: 449 FLPRLQEL---YISRNKLK 464
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-26
Identities = 61/395 (15%), Positives = 122/395 (30%), Gaps = 37/395 (9%)
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
+ D +FT +P + ++ + LDLS N + +L L L ++
Sbjct: 7 SGVCDGRSRSFT-SIPSGLTAA---MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62
Query: 122 SGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG-NIPVQLNNL 180
+ D S L L++S+N LS W G S L L + N Q + NL
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 181 KSLEFIDLSENSLIS------LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDN 234
+L+ + + S + L+ + + ++ +++ +L + L L +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182
Query: 235 KLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294
+ + + S++ L LR L + L S M R +
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242
Query: 295 VPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354
+ LEL + +
Sbjct: 243 LL-----------------------KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279
Query: 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESL 414
+ L + ++ L+ ++ + + N+ + +LK +E L
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339
Query: 415 DLSRNKLSGQIPPQLTELNFLSN---FNVSYNNLS 446
DLS N + + + +S N+L
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 71/445 (15%), Positives = 143/445 (32%), Gaps = 43/445 (9%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNF-EGNIPYSVGEMKELTILDLSRN 70
L HLD+S N+ S L + L YL++ N + + + L L +
Sbjct: 75 SLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKMTDG 128
++ R + SL+ L++ + + + + ++ D+ L L + + +
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191
Query: 129 LLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDL 188
+ +R L + + L+ + V S + N L L +
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL-LRYI 250
Query: 189 SENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERS 248
E S + + + + + + + + T+ L + LF + +
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310
Query: 249 NLHVLLLRGNYLQGRIPNQLCQ-LRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS 307
+ + + + + +P Q L+ L +DLS N + A
Sbjct: 311 KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV--------EEYLKNSACKGAWP 361
Query: 308 E----FFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYM 363
N++ S L L+ L ++ + +
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT------FHPMPDSCQWPEKMRF- 414
Query: 364 AGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSG 423
L+LS + I Q + L++SNN L + L+ L +SRNKL
Sbjct: 415 --LNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKLK- 464
Query: 424 QIPP--QLTELNFLSNFNVSYNNLS 446
+P L + +S N L
Sbjct: 465 TLPDASLFPVLLVM---KISRNQLK 486
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-21
Identities = 69/450 (15%), Positives = 143/450 (31%), Gaps = 68/450 (15%)
Query: 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
D D S +F+ +P + + LD+S N + L +L L +
Sbjct: 5 DASGVCDGRSRSFT-SIPSG---LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKMTDG 128
+ S SL+ LDLS+N+ + L+ L L L N +
Sbjct: 61 RIN-TIEGDAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117
Query: 129 LLSS-TLLRVLNVSNNMLSGDIP-HWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI 186
L + T L+ L + N +I + L+ L + L+ L +++ + +
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177
Query: 187 DLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP 241
L + L + V+++ L++ + L + +
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG----- 232
Query: 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREA 301
+ + S +L ++ + +L ++ D + N L
Sbjct: 233 SVLTDESFNELL---------KLLRYILELSEVEFDDCTLNGLG---------------- 267
Query: 302 TDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN 361
N +S V +E LH Q + + +
Sbjct: 268 ---------DFNPSESDVVSELGKVETVTIRRLHIPQFY-----LFYDLSTVYSLLEKVK 313
Query: 362 YMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPES---FSNLKMIESLDLSR 418
+ + ++ L+++ L+LS NL+ ++ +++L LS+
Sbjct: 314 R---ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370
Query: 419 NKLS--GQIPPQLTELNFLSNFNVSYNNLS 446
N L + L L L++ ++S N
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH 400
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 4e-19
Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 37/279 (13%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
L L + + S + E + + L + + ++ ++++ + + +
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM---NLTDLGSLYLDNNHFS--GKMTD 127
+P SL++LDLS N + N L +L L NH K +
Sbjct: 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381
Query: 128 GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFID 187
LL+ L L++S N +P + L +S ++ V+ ++LE +D
Sbjct: 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLD 437
Query: 188 LSENSLISLS-NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246
+S N+L S S L ++ +Y+ N +K L +L
Sbjct: 438 VSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLF------------------------- 472
Query: 247 RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
L V+ + N L+ +L L + L N +
Sbjct: 473 -PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 50/302 (16%), Positives = 107/302 (35%), Gaps = 28/302 (9%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L S + F+ + D S N + + E+ E+ D + N
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRYILELSEVEFDDCTLNG 265
Query: 72 FT-------GKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK 124
+ +++ L + + L Y L + + ++N+
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324
Query: 125 MTDGLLSS-TLLRVLNVSNNMLSGDIPHW---IGNFSVLSVLLMSENYLQ--GNIPVQLN 178
+ L L++S N++ + G + L L++S+N+L+ L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 179 NLKSLEFIDLSENSLISL----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDN 234
LK+L +D+S N+ + ++ + L + I+ ++ + ++ L LD+ +N
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNN 441
Query: 235 KLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294
L + L L + N L+ +P+ L +M +SRN+L
Sbjct: 442 NL-DSFSLFL---PRLQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDR 495
Query: 295 VP 296
+
Sbjct: 496 LT 497
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 16/204 (7%)
Query: 12 KLRHLDISSNNFSGKLPENLGII--FQKLIYLDMSKNNFE--GNIPYSVGEMKELTILDL 67
L LD+S N + +N + L L +S+N+ + +K LT LD+
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394
Query: 68 SRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTD 127
SRN F +P + +L+LS+ ++ L L + NN+ +
Sbjct: 395 SRNTFH-PMP-DSCQWPEKMRFLNLSSTGI--RVVKTC-IPQTLEVLDVSNNNLD-SFSL 448
Query: 128 GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFID 187
L L+ L +S N L +P F VL V+ +S N L+ + L SL+ I
Sbjct: 449 FLPR---LQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503
Query: 188 LSENSLI-SLSNLSFVKHIYLQNN 210
L N S + ++ +N+
Sbjct: 504 LHTNPWDCSCPRIDYLSRWLNKNS 527
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 366 LDLSGNEFSGEIPWK-IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424
L + E EI L ++ L + L +S +++ I L L ++ +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Query: 425 IPPQLTELNFLSNFNVSYNNLSG 447
+ L+ + + NL+
Sbjct: 188 LEIFADILSSVRYLELRDTNLAR 210
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-27
Identities = 63/276 (22%), Positives = 116/276 (42%), Gaps = 22/276 (7%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
KL +L I +N + L + L L ++++N P + + ++ L+L N+
Sbjct: 89 KLTNLYIGTNKITD--ISALQNL-TNLRELYLNEDNISDISP--LANLTKMYSLNLGANH 143
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
L +S+ L++L ++ + NLTDL SL L+ N L S
Sbjct: 144 NLSDLS--PLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED--ISPLAS 197
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN 191
T L N ++ P + N + L+ L + N + P L NL L ++++ N
Sbjct: 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN 253
Query: 192 ---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERS 248
+ ++ +L+ +K + + +N I + + L L +L L +N+L I +
Sbjct: 254 QISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQ--LNSLFLNNNQLGNEDMEVIGGLT 311
Query: 249 NLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
NL L L N++ P L L K+ D + +
Sbjct: 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 59/282 (20%), Positives = 112/282 (39%), Gaps = 24/282 (8%)
Query: 12 KLRHLDISSNNFSGKLP-ENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
L +L+++ N + P NL KL L + N +I ++ + L L L+ +
Sbjct: 67 NLEYLNLNGNQITDISPLSNL----VKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNED 120
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
N + P +++ + L+L N+ L N+T L L + + +
Sbjct: 121 NISDISP---LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKD--VTPIA 174
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSE 190
+ T L L+++ N + P + + + L N + P + N+ L + +
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230
Query: 191 N---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER 247
N L L+NLS + + + N I + + L L L++ N++ +N
Sbjct: 231 NKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTK--LKMLNVGSNQI--SDISVLNNL 286
Query: 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP 289
S L+ L L N L + L L+ + LS+N + P
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 62/286 (21%), Positives = 120/286 (41%), Gaps = 24/286 (8%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+ L ++ + + + L YL+++ N P + + +LT L + N
Sbjct: 45 SITKLVVAGEKVAS--IQGIEY-LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK 99
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
T + + +L L L+ +N NLT + SL L NH ++ L +
Sbjct: 100 ITDI---SALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS-PLSN 153
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN 191
T L L V+ + + P I N + L L ++ N ++ P L +L SL + N
Sbjct: 154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209
Query: 192 ---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERS 248
+ ++N++ + + + NN I L P+A L L L++ N++ + + + +
Sbjct: 210 QITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ--LTWLEIGTNQI--SDINAVKDLT 265
Query: 249 NLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294
L +L + N + I L L +L+ + L+ N+L +G
Sbjct: 266 KLKMLNVGSNQISD-ISV-LNNLSQLNSLFLNNNQLGNEDMEVIGG 309
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 6e-23
Identities = 49/256 (19%), Positives = 110/256 (42%), Gaps = 21/256 (8%)
Query: 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSN 94
+ I + K + + E++ +T L ++ + +L++L+L+
Sbjct: 21 LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNG 75
Query: 95 NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
N NL L +LY+ N + L + T LR L ++ + +S P +
Sbjct: 76 NQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LA 129
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN---SLISLSNLSFVKHIYLQNNA 211
N + + L + N+ ++ L+N+ L ++ ++E+ + ++NL+ + + L N
Sbjct: 130 NLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ 188
Query: 212 IKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQL 271
I+ + P+A L S L N++ P + + L+ L + N + P L L
Sbjct: 189 IEDISPLASLTS--LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANL 242
Query: 272 RKLSIMDLSRNRLNGP 287
+L+ +++ N+++
Sbjct: 243 SQLTWLEIGTNQISDI 258
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 19/206 (9%)
Query: 12 KLRHLDISSNNFSGKLP-ENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
L +L ++ + P NL L L ++ N E P + + L N
Sbjct: 156 GLNYLTVTESKVKDVTPIANL----TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
T P V++ L+ L + NN NL+ L L + N S + +
Sbjct: 210 QITDITP---VANMTRLNSLKIGNNKI--TDLSPLANLSQLTWLEIGTNQISD--INAVK 262
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSE 190
T L++LNV +N +S DI + N S L+ L ++ N L + L +L + LS+
Sbjct: 263 DLTKLKMLNVGSNQIS-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320
Query: 191 N---SLISLSNLSFVKHIYLQNNAIK 213
N + L++LS + N IK
Sbjct: 321 NHITDIRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-17
Identities = 51/321 (15%), Positives = 110/321 (34%), Gaps = 45/321 (14%)
Query: 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194
L ++ P + + ++ + + + L+S+ + ++ +
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 195 SLSNLSF---VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLH 251
S+ + + ++++ L N I + P++ L L L + NK+ + +NL
Sbjct: 58 SIQGIEYLTNLEYLNLNGNQITDISPLSNLVK--LTNLYIGTNKI--TDISALQNLTNLR 113
Query: 252 VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFY 311
L L + + P L L K+ ++L N S L N+
Sbjct: 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYL-------TVT 163
Query: 312 ANNVDSPVAYYN-SSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG-SNLNYMAGLDLS 369
+ V N + L L N+ E ++L +
Sbjct: 164 ESKVKDVTPIANLTDLY-----SLSLN-----------YNQIEDISPLASLTSLHYFTAY 207
Query: 370 GNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQL 429
N+ + P + + + +L + NN ++ P +NL + L++ N++S +
Sbjct: 208 VNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAV 261
Query: 430 TELNFLSNFNVSYNNLSGPIP 450
+L L NV N +S
Sbjct: 262 KDLTKLKMLNVGSNQISDISV 282
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 28/182 (15%), Positives = 73/182 (40%), Gaps = 14/182 (7%)
Query: 111 LGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170
+L + D L+ + ++ + ++ L+++ +
Sbjct: 2 AATLATLPAPINQIFPDADLAE--GIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 171 GNIPVQLNNLKSLEFIDLSEN---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLL 227
+I + L +LE+++L+ N + LSNL + ++Y+ N I + + L + L
Sbjct: 58 -SIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNL--TNLR 113
Query: 228 TLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGP 287
L L ++ + P + + ++ L L N+ + L + L+ + ++ +++
Sbjct: 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV 170
Query: 288 IP 289
P
Sbjct: 171 TP 172
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
+L + L++ N+ S + L + +L L+NN L E L + +L LS
Sbjct: 262 KDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
+N ++ P L L+ + + + + +
Sbjct: 320 QNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
+NL+ + L++ N+ S + L ++ LN+ +N +S +NL + SL L+
Sbjct: 240 ANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLN 295
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
N+L + + L L+ +S N+++ P
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-27
Identities = 86/442 (19%), Positives = 154/442 (34%), Gaps = 55/442 (12%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+ + N + + + ++ L + V + LT ++ S N
Sbjct: 25 EKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQ 79
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
T P + + L + ++NN NLT+L L L NN + L+
Sbjct: 80 LTDITP---LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDPLKNLT 134
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN 191
+ L L +S+N +S + + L L N + P L NL +LE +D+S N
Sbjct: 135 N--LNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSN 187
Query: 192 ---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERS 248
+ L+ L+ ++ + NN I + P+ +L + L L L N+L + + +
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQL--KDIGTLASLT 243
Query: 249 NLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSE 308
NL L L N + P L L KL+ + L N+++ + S
Sbjct: 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-------------------NISP 282
Query: 309 FFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG-SNLNYMAGLD 367
+ + N QL + + + N S+L + L
Sbjct: 283 LAGLTALTNLELNEN-----QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLF 337
Query: 368 LSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPP 427
N+ S + L NI L+ +N +S P +NL I L L+ +
Sbjct: 338 FYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393
Query: 428 QLTELNFLSNFNVSYNNLSGPI 449
++ + L P
Sbjct: 394 YKANVSIPNTVKNVTGALIAPA 415
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 3e-22
Identities = 63/288 (21%), Positives = 113/288 (39%), Gaps = 26/288 (9%)
Query: 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTI 64
+ D++ L + + L ++ S N P + + +L
Sbjct: 40 VSQTDLDQVTTLQADRLGIKS--IDGVE-YLNNLTQINFSNNQLTDITP--LKNLTKLVD 94
Query: 65 LDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK 124
+ ++ N P +++ +L L L NN NLT+L L L +N S
Sbjct: 95 ILMNNNQIADITP---LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD- 148
Query: 125 MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLE 184
L T L+ L+ N ++ P + N + L L +S N + L L +LE
Sbjct: 149 -ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLE 202
Query: 185 FIDLSEN---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP 241
+ + N + L L+ + + L N +K + +A L + L LDL +N++ P
Sbjct: 203 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN--LTDLDLANNQISNLAP 260
Query: 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP 289
++ + L L L N + P L L L+ ++L+ N+L P
Sbjct: 261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-18
Identities = 51/234 (21%), Positives = 93/234 (39%), Gaps = 21/234 (8%)
Query: 59 MKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118
+ E L + N T + + + L + L +L + N
Sbjct: 23 LAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSN 77
Query: 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN 178
N + L + T L + ++NN ++ P + N + L+ L + N + P L
Sbjct: 78 NQLTDI--TPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LK 131
Query: 179 NLKSLEFIDLSEN---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK 235
NL +L ++LS N + +LS L+ ++ + N + L P+A L + L LD+ NK
Sbjct: 132 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ-VTDLKPLANLTT--LERLDISSNK 188
Query: 236 LFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP 289
+ + + +NL L+ N + P L L L + L+ N+L
Sbjct: 189 V--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT 238
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 12/158 (7%)
Query: 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194
L ++ + I + ++ + + + +L + + +
Sbjct: 3 LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59
Query: 195 SLSNLSF---VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLH 251
S+ + + + I NN + + P+ L L+ + + +N++ P + +NL
Sbjct: 60 SIDGVEYLNNLTQINFSNNQLTDITPLKNLTK--LVDILMNNNQIADITP--LANLTNLT 115
Query: 252 VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP 289
L L N + P L L L+ ++LS N ++
Sbjct: 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA 151
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 8e-08
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
S L + L L N+ S P + L + L L+ N L SNLK + L L
Sbjct: 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 317
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
N +S P ++ L L N +S
Sbjct: 318 FNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
++ S N+ + P + L + + ++NN ++ P +NL + L L N+++
Sbjct: 73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128
Query: 426 PPQLTELNFLSNFNVSYNNLSGPIP 450
P L L L+ +S N +S
Sbjct: 129 P--LKNLTNLNRLELSSNTISDISA 151
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
+ L + L + N+ S P +G L N+ L+L+ N L + ++L + LDL+
Sbjct: 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 251
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
N++S P L+ L L+ + N +S P
Sbjct: 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP 282
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 6/93 (6%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
+ L L + + L + L + + L + ++ S
Sbjct: 21 TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQINFS 76
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
N+L+ P L L L + ++ N ++ P
Sbjct: 77 NNQLTDITP--LKNLTKLVDILMNNNQIADITP 107
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
NL + L+LS N S + L +++ L+ N + + +NL +E LD+S
Sbjct: 131 KNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDIS 185
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
NK+S L +L L + + N +S P
Sbjct: 186 SNKVSD--ISVLAKLTNLESLIATNNQISDITP 216
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
S L + L N+ + P + L + L++S+N +S + L +ESL +
Sbjct: 153 SGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIAT 207
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
N++S P L L L +++ N L
Sbjct: 208 NNQISDITP--LGILTNLDELSLNGNQLKDIGT 238
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-25
Identities = 63/307 (20%), Positives = 111/307 (36%), Gaps = 63/307 (20%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
++ ++ + L++ + + LP+ + + L + NN ++P
Sbjct: 30 VVQKMRACLNNGNAVLNVGESGLT-TLPDC---LPAHITTLVIPDNNLT-SLP---ALPP 81
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
EL L++S N T LP L L + + L L++ N
Sbjct: 82 ELRTLEVSGNQLT-SLPVLP-PGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQ 132
Query: 121 FSGKMTDGLLSSTL--LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN 178
+ L L+ L+VS+N L+ +P L L N L ++P+ +
Sbjct: 133 LTS------LPVLPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPMLPS 181
Query: 179 NLKSLEFIDLSENSLISL---------------------SNLSFVKHIYLQNNAIKGLIP 217
L+ L +S+N L SL + S +K + + N + L P
Sbjct: 182 GLQEL---SVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSL-P 237
Query: 218 IALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIM 277
+ S L L + N+L +P S L L + N L R+P L L + +
Sbjct: 238 VLP---SELKELMVSGNRL-TSLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTV 289
Query: 278 DLSRNRL 284
+L N L
Sbjct: 290 NLEGNPL 296
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 69/304 (22%), Positives = 111/304 (36%), Gaps = 44/304 (14%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
L LP+ + L I NN + LP +L L++S N ++P + E
Sbjct: 52 LTTLPDCLPAHITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQLT-SLPVLPPGLLE 105
Query: 62 LTILDLSRNNFTGKLP------------RPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLT 109
L+I + + L L +S+N P +
Sbjct: 106 LSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL--ASLPA--LPS 161
Query: 110 DLGSLYLDNNHFSGKMTDGLLSSTL--LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167
+L L+ NN + L L+ L+VS+N L+ +P L L N
Sbjct: 162 ELCKLWAYNNQLTS------LPMLPSGLQELSVSDNQLA-SLPTLPSE---LYKLWAYNN 211
Query: 168 YLQGNIPVQLNNLKSLEFIDLSENSLISLSN-LSFVKHIYLQNNAIKGLIPIALLRSSTL 226
L ++P + LK L +S N L SL S +K + + N + L P+ S L
Sbjct: 212 RLT-SLPALPSGLKEL---IVSGNRLTSLPVLPSELKELMVSGNRLTSL-PMLP---SGL 263
Query: 227 LTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286
L+L + N+L R+P + S+ + L GN L R L ++ R +
Sbjct: 264 LSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDM 322
Query: 287 PIPS 290
S
Sbjct: 323 AGAS 326
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 2e-20
Identities = 71/347 (20%), Positives = 127/347 (36%), Gaps = 61/347 (17%)
Query: 108 LTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167
L + + + + D L + + L + +N L+ +P L L +S N
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91
Query: 168 YLQGNIPVQLNNLKSLEFIDLSENSLISL-SNLSFVKHIYLQNNAIKGLIPIALLRSSTL 226
L ++PV L L L +L S L +++ N + L P+ L
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGL---CKLWIFGNQLTSL-PVLP---PGL 143
Query: 227 LTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286
L + DN+L +P S L L N L +P L++L +S N+L
Sbjct: 144 QELSVSDNQL-ASLPALP---SELCKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLAS 195
Query: 287 PIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKF 346
+P+ + + + NN + + S L+ EL
Sbjct: 196 -LPTLPSEL-----------YKLWAYNNRLTSLPALPSGLK-----ELI----------- 227
Query: 347 VTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFS 406
V+ NR + + + L +SGN + +P L + L++ N L+ +PES
Sbjct: 228 VSGNRLT-SLPVLPSELKELMVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLI 281
Query: 407 NLKMIESLDLSRNKLS---GQIPPQLTELNFLSNFNVSYNNLSGPIP 450
+L +++L N LS Q ++T S + ++ P
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP 328
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 8e-15
Identities = 59/277 (21%), Positives = 91/277 (32%), Gaps = 51/277 (18%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
LP LP L L I N + LP L L +S N ++P E
Sbjct: 116 LPALP----SGLCKLWIFGNQLT-SLPVLPP----GLQELSVSDNQLA-SLPALPSE--- 162
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
L L N T LP L L +S+N P ++L L+ NN
Sbjct: 163 LCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQL--ASLPT--LPSELYKLWAYNNRL 213
Query: 122 SG-----------KMTDGLLSS-----TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165
+ ++ L+S + L+ L VS N L+ +P L L +
Sbjct: 214 TSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPMLPSG---LLSLSVY 269
Query: 166 ENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVK----HIYLQNNAIKGLIPIALL 221
N L +P L +L S ++L N L + + + Y + +
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP 328
Query: 222 RSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGN 258
R + L L D + P + E + + G
Sbjct: 329 RETRALHLAAADWLV----PAREGEPAPADRWHMFGQ 361
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 7e-08
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
L +SGN + +P +L+ L +S N L+ ++P S L SL + RN+L+ ++
Sbjct: 226 LIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RL 276
Query: 426 PPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCS 462
P L L+ + N+ N LS + T
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 60/180 (33%)
Query: 267 QLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSL 326
+ C +++++ + L +P CL ++ + V N+
Sbjct: 35 RACLNNGNAVLNVGESGLTT-LPDCLP-------------------AHITTLVIPDNNLT 74
Query: 327 ELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQN 386
LP L L++SGN+ + +P L
Sbjct: 75 S--LPALP-----------------------PELRT---LEVSGNQLT-SLPVLPPGLLE 105
Query: 387 IRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
+ + +P S L L + N+L+ +P L L +VS N L+
Sbjct: 106 LSIFSNPLT----HLPALPSGLC---KLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA 154
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-25
Identities = 48/279 (17%), Positives = 105/279 (37%), Gaps = 19/279 (6%)
Query: 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
++ + ++ ++ + +L + LD+S N + +L +L+LS N
Sbjct: 10 NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
+ S +L LDL+NN Q + +L+ NN+ S +++
Sbjct: 69 VLYE---TLDLESLSTLRTLDLNNNYV--QELL---VGPSIETLHAANNNIS-RVSCSRG 119
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG-NIPVQLNNLKSLEFIDLS 189
+ + ++NN ++ G S + L + N + N + +LE ++L
Sbjct: 120 QG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 190 ENSLISLSNLSFV---KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246
N + + K + L +N + + ++ + + LR+NKL I +
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL-VLIEKALRF 235
Query: 247 RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
NL LRGN + + + +++ +
Sbjct: 236 SQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 7e-22
Identities = 46/255 (18%), Positives = 89/255 (34%), Gaps = 41/255 (16%)
Query: 59 MKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNN---FYGQLF------------- 102
I ++ ++ + + S ++ LDLS N
Sbjct: 9 GNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 103 ------PNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNF 156
+ +L+ L +L L+NN+ LL + L+ +NN +S +
Sbjct: 68 NVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS--CSRG 119
Query: 157 SVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFV------KHIYLQNN 210
+ ++ N + + ++++DL N + +++ +H+ LQ N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 211 AIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ 270
I + + L TLDL NKL + + + + + LR N L I L
Sbjct: 180 FIYDVKGQVVFAK--LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235
Query: 271 LRKLSIMDLSRNRLN 285
+ L DL N +
Sbjct: 236 SQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 1e-18
Identities = 40/299 (13%), Positives = 105/299 (35%), Gaps = 59/299 (19%)
Query: 153 IGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL-----SNLSFVKHIYL 207
N + + ++++ L+ + + +++ +DLS N L + + + ++ + L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 208 QNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQ 267
+N + + + L + L TLDL +N + ++ ++ L N + ++
Sbjct: 66 SSNVLYETLDLESLST--LRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSR 118
Query: 268 LCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLE 327
+ + L+ N++ G ++
Sbjct: 119 GQGKKNI---YLANNKITMLRDLDEGCRS----------------------------RVQ 147
Query: 328 LQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNI 387
L + ++ + + + + + L+L N ++ ++ +
Sbjct: 148 -----YLDLKLNE------IDTVNFAELAA-SSDTLEHLNLQYNFIY-DVKGQV-VFAKL 193
Query: 388 RALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
+ L+LS+N L+ + F + + + L NKL I L L +F++ N
Sbjct: 194 KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 8e-17
Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 14/233 (6%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
L P+ + L ++NN S ++ + Q + ++ N G
Sbjct: 95 LLVGPS-----IETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR 145
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
+ LDL N + +S +L+ L+L N + L +L L +N
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKL 203
Query: 122 SGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLK 181
+ M S+ + +++ NN L I + L + N ++ K
Sbjct: 204 A-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSK 260
Query: 182 SLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDN 234
+ +++ ++ L+ + + L + L +
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHH 313
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 34/179 (18%), Positives = 69/179 (38%), Gaps = 6/179 (3%)
Query: 107 NLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166
N + ++ + S+ ++ L++S N LS + F+ L +L +S
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 167 NYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTL 226
N L + L +L +L +DL+ N + L ++ ++ NN I + + +
Sbjct: 68 NVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR-VSCSRGQG--K 122
Query: 227 LTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQG-RIPNQLCQLRKLSIMDLSRNRL 284
+ L +NK+ RS + L L+ N + L ++L N +
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 29/169 (17%), Positives = 61/169 (36%), Gaps = 12/169 (7%)
Query: 130 LSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLS 189
+ ++ V+++ L + + + L +S N L L LE ++LS
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 190 EN---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246
N + L +LS ++ + L NN ++ LL ++ TL +N + R+
Sbjct: 67 SNVLYETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSRG- 119
Query: 247 RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG-PIPSCLGN 294
+ L N + ++ +DL N ++ +
Sbjct: 120 -QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 356 IGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLD 415
I N N ++ + + N++ L+LS N LS + +E L+
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 416 LSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
LS N L L L+ L +++ N +
Sbjct: 65 LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 15/70 (21%), Positives = 26/70 (37%)
Query: 381 IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNV 440
+ ++++ L A+ + ++ LDLS N LS L L N+
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 441 SYNNLSGPIP 450
S N L +
Sbjct: 66 SSNVLYETLD 75
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 7e-07
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 3/110 (2%)
Query: 357 GSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
+ LDLS N+ + + + + ++L NN L I ++ + +E DL
Sbjct: 187 QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL 244
Query: 417 SRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGN 466
N + V+ + E+ T + G
Sbjct: 245 RGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 7e-25
Identities = 89/442 (20%), Positives = 148/442 (33%), Gaps = 78/442 (17%)
Query: 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTIL 65
N L+ S+N + ++P + + + + +E N P GE +E+ +
Sbjct: 6 RNVSNTFLQEPLRHSSNLT-EMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAVS 63
Query: 66 DLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKM 125
L L+L+N P L SL N + ++
Sbjct: 64 RLRDCLDR------------QAHELELNNLGL--SSLPE--LPPHLESLVASCNSLT-EL 106
Query: 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185
+ S L V N + LS P L L +S N L+ +P +L N L+
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLKI 157
Query: 186 IDLSENSLISL-SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244
ID+ NSL L ++ I NN ++ L + L L + +N L ++P
Sbjct: 158 IDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPF--LTAIYADNNSL-KKLPDLP 214
Query: 245 NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDD 304
+L ++ N L +L L L+ + N L +P ++
Sbjct: 215 ---LSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKT-LPDLPPSL--------- 259
Query: 305 DSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMA 364
+N + + SL E F + +
Sbjct: 260 --EALNVRDNYLTDLPELPQSLTFLDVSENIFSG-----------------LSELPPNLY 300
Query: 365 GLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424
L+ S NE + ++ LN+SNN L +P L E L S N L+ +
Sbjct: 301 YLNASSNEIR-SLC---DLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-E 351
Query: 425 IPPQLTELNFLSNFNVSYNNLS 446
+P L L +V YN L
Sbjct: 352 VPELPQNLKQL---HVEYNPLR 370
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 2e-23
Identities = 78/412 (18%), Positives = 142/412 (34%), Gaps = 71/412 (17%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L+ L + +NN L + L YL +S N E +P + L I+D+ N+
Sbjct: 112 SLKSLLVDNNNLK-----ALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNS 164
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
KLP S L+++ NN + P NL L ++Y DNN K+ D LS
Sbjct: 165 LK-KLPDLPPS----LEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPLS 216
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN 191
L + NN+L ++P + N L+ + N L+ +P +L++L D
Sbjct: 217 ---LESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT 270
Query: 192 SL-ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNL 250
L +L+F+ + + L P L L+ N++ + +L
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEI-RSLCDLP---PSL 319
Query: 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFF 310
L + N L +P +L +L S N L +P N+ +
Sbjct: 320 EELNVSNNKLI-ELPALPPRLERL---IASFNHLAE-VPELPQNL-----------KQLH 363
Query: 311 YANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSG 370
N L + P +D ++ + + + L +
Sbjct: 364 VEYN----------PLR-EFPDIPESVEDLRMNSHLAE-------VPELPQNLKQLHVET 405
Query: 371 NEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS 422
N E P +++ L +++ + + +E +
Sbjct: 406 NPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 6e-18
Identities = 71/307 (23%), Positives = 114/307 (37%), Gaps = 49/307 (15%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
LP L N+ L+ +D+ +N+ KLP+ L ++ N E +P + +
Sbjct: 146 LPELQNSS--FLKIIDVDNNSLK-KLPDLPP----SLEFIAAGNNQLE-ELP-ELQNLPF 196
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
LT + N+ KLP LSL+ + NN + P NL L ++Y DNN
Sbjct: 197 LTAIYADNNSLK-KLP----DLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLL 249
Query: 122 SGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIP--VQLN- 178
L S L LNV +N L+ D+P + + L V + L P LN
Sbjct: 250 K--TLPDLPPS--LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304
Query: 179 ----------NLKSLEFIDLSENSLISL-SNLSFVKHIYLQNNAIKGLIPIALLRSSTLL 227
SLE +++S N LI L + ++ + N + + + L
Sbjct: 305 SSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPEL----PQNLK 360
Query: 228 TLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGP 287
L + N L P +L + N +P L++L + N L
Sbjct: 361 QLHVEYNPL-REFPDIPESVEDLRM-----NSHLAEVPELPQNLKQL---HVETNPLRE- 410
Query: 288 IPSCLGN 294
P +
Sbjct: 411 FPDIPES 417
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
+ N E+P ++ L + + NNLL +P+ +L+ +L++ N L+ +
Sbjct: 220 IVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDNYLT-DL 272
Query: 426 PPQLTELNFLSNFNVSYNNLSGPIP 450
P L FL ++ LS P
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPP 297
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 53/281 (18%), Positives = 104/281 (37%), Gaps = 15/281 (5%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
R LD+ N L ++ F L L++++N P + + L L L N
Sbjct: 34 TRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKMTDGLL 130
+P + + +L LD+S N + +YM +L +L SL + +N ++
Sbjct: 93 K-LIPLGVFTGLSNLTKLDISENKI--VILLDYMFQDLYNLKSLEVGDNDLV-YISHRAF 148
Query: 131 SS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLS 189
S L L + L+ + + L VL + + L L+ +++S
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 190 ENSLISLSNLSF-----VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244
+ + + + + + + + +A+ L L+L N + I +
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSM 267
Query: 245 NER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
L + L G L P L L ++++S N+L
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 2e-21
Identities = 53/258 (20%), Positives = 95/258 (36%), Gaps = 13/258 (5%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
LR L + SN +P + L LD+S+N + Y ++ L L++ N+
Sbjct: 81 NLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKMTDGL 129
+ S SL+ L L N P +L L L L + + +
Sbjct: 140 LV-YISHRAFSGLNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196
Query: 130 LSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLS 189
L+VL +S+ + L+ L ++ L + + +L L F++LS
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256
Query: 190 ENSLISLSNLSFV-----KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244
N + ++ + I L + + P A + L L++ N+L + +
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEESV 315
Query: 245 NER-SNLHVLLLRGNYLQ 261
NL L+L N L
Sbjct: 316 FHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 2e-21
Identities = 53/281 (18%), Positives = 97/281 (34%), Gaps = 20/281 (7%)
Query: 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT 73
R + F +PE I + LD+ KN + L L+L+ N +
Sbjct: 14 RAVLCHRKRFV-AVPEG---IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69
Query: 74 GKLPRPIVSSCLSLDWLDLSNNNFY---GQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
+ ++ +L L L +N +F NLT L + N + D +
Sbjct: 70 -AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT---KLDISENKIV-ILLDYMF 124
Query: 131 SS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLS 189
L+ L V +N L + L L + + L L++L L + L
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184
Query: 190 ENSLISLSNLSFV-----KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244
++ ++ + SF K + + + + L L +L + L +P+
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLA 243
Query: 245 NER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
L L L N + + L +L +L + L +L
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 5e-19
Identities = 62/330 (18%), Positives = 111/330 (33%), Gaps = 42/330 (12%)
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFIDLSE 190
T R+L++ N + +F L L ++EN + + NNL +L + L
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89
Query: 191 NSLISLSNLSFV-----KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQIN 245
N L + F + + N I L+ L +L++ DN L I+
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-----VYIS 144
Query: 246 ER-----SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE 300
R ++L L L L L L L ++ L +N + +
Sbjct: 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204
Query: 301 ATDDDSSEFFYANN---VDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG 357
+P Y +L L +T Y
Sbjct: 205 LEISH-------WPYLDTMTPNCLYGLNLT-----SLSITHCN------LTAVPYLAV-- 244
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
+L Y+ L+LS N S + +L ++ + L L+ P +F L + L++S
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304
Query: 418 RNKLSGQIPPQL-TELNFLSNFNVSYNNLS 446
N+L+ + + + L + N L+
Sbjct: 305 GNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 186 IDLSENSLISL-SNL-SFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 243
+ +++ + + + + L N IK L L L+L +N + +
Sbjct: 16 VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPG 74
Query: 244 I-NERSNLHVLLLRGNYLQGRIPNQLCQ-LRKLSIMDLSRNRLN 285
N NL L LR N L+ IP + L L+ +D+S N++
Sbjct: 75 AFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV 117
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 6e-05
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
+ F +P I R L+L N + + F++ +E L+L+ N +S +
Sbjct: 16 VLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AV 71
Query: 426 PPQ-LTELNFLSNFNVSYNNLS 446
P L L + N L
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLK 93
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 3e-23
Identities = 48/277 (17%), Positives = 96/277 (34%), Gaps = 29/277 (10%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
L +A L++ S + P+ L ++ + +P ++ +
Sbjct: 71 TADLLEDATQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFA 127
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
L L L+RN LP I +S L L + +L + G N
Sbjct: 128 GLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN- 184
Query: 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNL 180
L+ L + + +P I N L L + + L + +++L
Sbjct: 185 --------------LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL 228
Query: 181 KSLEFIDLSENSLI-----SLSNLSFVKHIYLQN-NAIKGLIPIALLRSSTLLTLDLRDN 234
LE +DL + + + +K + L++ + + L P+ + R + L LDLR
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGC 287
Query: 235 KLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQL 271
R+P I + ++L+ + ++
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 6e-23
Identities = 44/364 (12%), Positives = 99/364 (27%), Gaps = 69/364 (18%)
Query: 86 SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNML 145
+ L + + + H + + +S ++ + L
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR----QANSNNPQIETRTGRAL 68
Query: 146 SGDIPHWIGNFSV--LSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL----SNL 199
+ + + L + L P Q L L+ + + L+ L
Sbjct: 69 K-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQF 126
Query: 200 SFVKHIYLQNNAIKGLIP--IALLRSSTLLTLDLRDNKLFGRIPHQINERS--------- 248
+ ++ + L N ++ L P IA L L L +R +P +
Sbjct: 127 AGLETLTLARNPLRAL-PASIASLNR--LRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 249 NLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSE 308
NL L L ++ +P + L+ L + + + L+ + + ++P E
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP---------KLE 232
Query: 309 FFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDL 368
++L P + L L
Sbjct: 233 ELDLRG--------CTALR-NYPPIF-----------------------GGRAPLKRLIL 260
Query: 369 SGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQ 428
+P I +L + L+L + +P + L + + + + +
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
Query: 429 LTEL 432
Sbjct: 321 PVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 49/297 (16%), Positives = 101/297 (34%), Gaps = 26/297 (8%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
+L + + L +Q+ D ++ + + I +
Sbjct: 14 RENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL 68
Query: 73 TGKLPRPI-VSSCLSLDWLDLSNNNFYGQLFPNYM-NLTDLGSLYLDNNHFSGKMTDGLL 130
+ ++ L+L + FP+ L+ L + +D ++ D +
Sbjct: 69 K-ATADLLEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL---------QGNIPVQLNNLK 181
L L ++ N L +P I + + L L + + + L
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 182 SLEFIDLSENSLISL----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237
+L+ + L + SL +NL +K + ++N+ + L A+ L LDLR
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTAL 242
Query: 238 GRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294
P R+ L L+L+ +P + +L +L +DL +PS +
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 39/323 (12%), Positives = 88/323 (27%), Gaps = 47/323 (14%)
Query: 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194
L + + + + + + N + + + +L
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69
Query: 195 SL------SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERS 248
+ + + L++ + P R S L + + L +P + + +
Sbjct: 70 ATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGL-MELPDTMQQFA 127
Query: 249 NLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSE 308
L L L N L+ +P + L +L + + +P L + E + +
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186
Query: 309 FFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDL 368
+ + LP + +NL + L +
Sbjct: 187 SLRLE---------WTGIR-SLPASI-----------------------ANLQNLKSLKI 213
Query: 369 SGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQ 428
+ S + I L + L+L P F ++ L L +P
Sbjct: 214 RNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Query: 429 LTELNFLSNFNVSYNNLSGPIPD 451
+ L L ++ +P
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPS 295
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 50/358 (13%), Positives = 95/358 (26%), Gaps = 64/358 (17%)
Query: 55 SVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114
L + + S D + + + N +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVL-SQWQRHYNADRNRWHSAWRQ----ANSNNPQIE 61
Query: 115 YLDNNHFSGKMTD-GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI 173
+ L + + L P S L + + L +
Sbjct: 62 TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119
Query: 174 PVQLNNLKSLEFIDLSENSLISL----SNLSFVKHIYLQ-NNAIKGL--------IPIAL 220
P + LE + L+ N L +L ++L+ ++ + ++ + L
Sbjct: 120 PDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 221 LRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLS 280
L +L L + +P I NL L +R + L + + L KL +DL
Sbjct: 180 QGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237
Query: 281 RNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQ 340
P G + + S+L LP+++
Sbjct: 238 GCTALRNYPPIFGGRA---------PLKRLILKD--------CSNLL-TLPLDI------ 273
Query: 341 QVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLS 398
L + LDL G +P I QL + + +L +
Sbjct: 274 -----------------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 29/233 (12%), Positives = 61/233 (26%), Gaps = 56/233 (24%)
Query: 223 SSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
SS L + + +++ + + R N I +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGR 66
Query: 283 RLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQV 342
L L + AT + L Q P +
Sbjct: 67 ALKA-TADLLED------ATQPGRVALELRSV----------PLP-QFPDQA-------- 100
Query: 343 GAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIP 402
L+++ + + E+P + Q + L L+ N L A+P
Sbjct: 101 ---------------FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP 143
Query: 403 ESFSNLKMIESLDLSRNKLSGQIPPQLTELNF---------LSNFNVSYNNLS 446
S ++L + L + ++P L + L + + + +
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 59/289 (20%), Positives = 111/289 (38%), Gaps = 21/289 (7%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
+ + + + + ++ KLP L F+++ L+++ E Y+
Sbjct: 35 VYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH 93
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDN 118
+ L + N LP + + L L L N+ P + N L +L + N
Sbjct: 94 TIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSN 150
Query: 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN 178
N+ D ++T L+ L +S+N L+ + + L +S N L L
Sbjct: 151 NNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLA 202
Query: 179 NLKSLEFIDLSENSLISLSNLSFV--KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
++E +D S NS+ + V + LQ+N + + L+ +DL N+L
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG--LVEVDLSYNEL 260
Query: 237 FGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
+I + + L L + N L + + L ++DLS N L
Sbjct: 261 -EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 307
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 8e-23
Identities = 60/281 (21%), Positives = 110/281 (39%), Gaps = 20/281 (7%)
Query: 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDL 67
+ ++ L+++ ++ + L M N P+ + LT+L L
Sbjct: 66 DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124
Query: 68 SRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN-YMNLTDLGSLYLDNNHFSGKMT 126
RN+ + LPR I + L L +SNNN ++ + + T L +L L +N + +
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVD 181
Query: 127 DGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI 186
L+ S L NVS N+LS + + L S N + V+ L +
Sbjct: 182 LSLIPS--LFHANVSYNLLST-----LAIPIAVEELDASHNSINV---VRGPVNVELTIL 231
Query: 187 DLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 243
L N+L + N + + L N ++ ++ ++ L L + +N+L +
Sbjct: 232 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLY 290
Query: 244 INERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
L VL L N+L + Q +L + L N +
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 1e-21
Identities = 59/280 (21%), Positives = 102/280 (36%), Gaps = 27/280 (9%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILDLSRN 70
++ L + N LP ++ L L + +N+ ++P + +LT L +S N
Sbjct: 94 TIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN 151
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
N ++ + SL L LS+N + L + N S L
Sbjct: 152 NLE-RIEDDTFQATTSLQNLQLSSNRL--THVDLS-LIPSLFHANVSYNLLST-----LA 202
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSE 190
+ L+ S+N ++ + L++L + N L + L N L +DLS
Sbjct: 203 IPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSY 257
Query: 191 NSLISLSNLSFV-----KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQIN 245
N L + FV + +Y+ NN + + + TL LDL N L +
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL-LHVERNQP 315
Query: 246 ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
+ L L L N + + L + LS N +
Sbjct: 316 QFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 50/273 (18%), Positives = 103/273 (37%), Gaps = 18/273 (6%)
Query: 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTG 74
H+D+ + + + I + + + +++ +L+L+
Sbjct: 27 HIDMQTQDVYFGFED---ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE- 82
Query: 75 KLPRPIVSSCLSLDWLDLSNNNFY---GQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
++ + ++ L + N +F N+ L L L+ N S +
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---QNVPLLTVLVLERNDLSSLPRGIFHN 139
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN 191
+ L L++SNN L + L L +S N L V L+ + SL ++S N
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYN 196
Query: 192 SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLH 251
L +L+ V+ + +N+I + + L L L+ N L + L
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNL--TDTAWLLNYPGLV 251
Query: 252 VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
+ L N L+ + + ++++L + +S NRL
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 52/235 (22%), Positives = 92/235 (39%), Gaps = 21/235 (8%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L++L +SSN + + +L L + ++S N ++ + LD S N+
Sbjct: 166 SLQNLQLSSNRLT-HVDLSL---IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 216
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
+ P+ + L L L +NN +N L + L N M +
Sbjct: 217 IN-VVRGPV---NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN 191
L L +SNN L + + L VL +S N+L ++ LE + L N
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328
Query: 192 SL--ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244
S+ + LS +K++ L +N AL R+ + + D +I +Q+
Sbjct: 329 SIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRN--VARPAVDDADQHCKIDYQL 381
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 6e-17
Identities = 54/326 (16%), Positives = 111/326 (34%), Gaps = 38/326 (11%)
Query: 127 DGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI 186
L + +++ + ++ + ++ L++ + +E +
Sbjct: 15 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74
Query: 187 DLSENSLISLSNLSFV-----KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP 241
+L++ + + +F + +Y+ NAI+ L P L L L N L +P
Sbjct: 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLP 133
Query: 242 HQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE 300
I L L + N L+ + L + LS NRL S + ++
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----- 188
Query: 301 ATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNL 360
+ N+ S +A + EL + N G
Sbjct: 189 ------FHANVSYNLLSTLAIPIAVEELDA-----------------SHNSINVVRGPVN 225
Query: 361 NYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNK 420
+ L L N + + W + + ++LS N L + F ++ +E L +S N+
Sbjct: 226 VELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 421 LSGQIPPQLTELNFLSNFNVSYNNLS 446
L + + L ++S+N+L
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL 308
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 33/209 (15%), Positives = 68/209 (32%), Gaps = 13/209 (6%)
Query: 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVS 141
+ + + L + + N+ L S + +LN++
Sbjct: 18 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77
Query: 142 NNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL----- 196
+ + + + L M N ++ P N+ L + L N L SL
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137
Query: 197 SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLR 256
N + + + NN ++ + +++L L L N+L + + +L +
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLI--PSLFHANVS 194
Query: 257 GNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
N L L + +D S N +N
Sbjct: 195 YNLLS-----TLAIPIAVEELDASHNSIN 218
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 21/206 (10%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
L + + L H ++S N S L + + LD S N+ + V E
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLLS-TLAIPI-----AVEELDASHNSIN-VVRGPV--NVE 227
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNN 119
LTIL L NN T + + L +DLS N + + + L LY+ NN
Sbjct: 228 LTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNN 282
Query: 120 HFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNN 179
+ L+VL++S+N L + F L L + N + ++L+
Sbjct: 283 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLST 337
Query: 180 LKSLEFIDLSENSLISLSNLSFVKHI 205
+L+ + LS N S + +++
Sbjct: 338 HHTLKNLTLSHNDWDCNSLRALFRNV 363
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
N + +DLS NE +I + ++Q + L +SNN L A+ + ++ LDL
Sbjct: 245 LNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302
Query: 417 SRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
S N L + + + L N + +N++
Sbjct: 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIV 331
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 6e-22
Identities = 61/288 (21%), Positives = 111/288 (38%), Gaps = 19/288 (6%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
+ + + + + ++ KLP L F+++ L+++ E Y+
Sbjct: 41 VYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH 99
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDN 118
+ L + N LP + + L L L N+ P + N L +L + N
Sbjct: 100 TIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSN 156
Query: 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN 178
N+ D ++T L+ L +S+N L+ + + L +S N L L
Sbjct: 157 NNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLA 208
Query: 179 NLKSLEFIDLSENSLISLSNLSFV--KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
++E +D S NS+ + V + LQ+N + LL L+ +DL N+L
Sbjct: 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 266
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
+ H + L L + N L + + L ++DLS N L
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 82.3 bits (203), Expect = 9e-17
Identities = 51/229 (22%), Positives = 101/229 (44%), Gaps = 23/229 (10%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
KL L +S+NN ++ ++ L L +S N ++ S+ + L ++S N
Sbjct: 148 KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNL 203
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
+ ++ ++++ LD S+N+ P + LT L L +N+ + T LL+
Sbjct: 204 LS------TLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLT--DTAWLLN 252
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN 191
L +++S N L + H L L +S N L + + + +L+ +DLS N
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311
Query: 192 SLISL----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
L+ + ++++YL +N+I + ++ + L L L N
Sbjct: 312 HLLHVERNQPQFDRLENLYLDHNSIVT-LKLSTHHT--LKNLTLSHNDW 357
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 4e-16
Identities = 55/326 (16%), Positives = 110/326 (33%), Gaps = 38/326 (11%)
Query: 127 DGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI 186
L + +++ + ++ + ++ L++ + +E +
Sbjct: 21 SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 80
Query: 187 DLSENSLISLSNLSFV-----KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP 241
+L++ + + +F + +Y+ NAI+ L P L L L N L +P
Sbjct: 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLP 139
Query: 242 HQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE 300
I L L + N L+ + L + LS NRL
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL---------------- 183
Query: 301 ATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNL 360
T D S ++ YN L +P+ + + N G
Sbjct: 184 -THVDLSLI---PSLFHANVSYNLLSTLAIPIAVEE--------LDASHNSINVVRGPVN 231
Query: 361 NYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNK 420
+ L L N + + W + + ++LS N L + F ++ +E L +S N+
Sbjct: 232 VELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 421 LSGQIPPQLTELNFLSNFNVSYNNLS 446
L + + L ++S+N+L
Sbjct: 290 LV-ALNLYGQPIPTLKVLDLSHNHLL 314
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 5e-13
Identities = 49/248 (19%), Positives = 84/248 (33%), Gaps = 42/248 (16%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
L + + L H ++S N S ++
Sbjct: 183 LTHVDLSLIPSLFHANVSYNLLS------------------------------TLAIPIA 212
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
+ LD S N+ + P+ + L L L +NN +N L + L N
Sbjct: 213 VEELDASHNSIN-VVRGPV---NVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNEL 266
Query: 122 SGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLK 181
M + L L +SNN L + + L VL +S N+L ++
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324
Query: 182 SLEFIDLSENSL--ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGR 239
LE + L NS+ + LS +K++ L +N AL R+ + + D +
Sbjct: 325 RLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRN--VARPAVDDADQHCK 382
Query: 240 IPHQINER 247
I +Q+
Sbjct: 383 IDYQLEHG 390
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 4e-11
Identities = 33/207 (15%), Positives = 70/207 (33%), Gaps = 15/207 (7%)
Query: 85 LSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNM 144
+ + + L + + N+ L S + +LN+++
Sbjct: 27 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86
Query: 145 LSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFIDLSENSLISL-----SN 198
+ + + L M N ++ +P N+ L + L N L SL N
Sbjct: 87 IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145
Query: 199 LSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGN 258
+ + + NN ++ + +++L L L N+L + ++ +L + N
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYN 202
Query: 259 YLQGRIPNQLCQLRKLSIMDLSRNRLN 285
L L + +D S N +N
Sbjct: 203 LLS-----TLAIPIAVEELDASHNSIN 224
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 1e-09
Identities = 27/188 (14%), Positives = 69/188 (36%), Gaps = 10/188 (5%)
Query: 104 NYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLL 163
N +++D ++ +++ N+ + + +F + +L
Sbjct: 22 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81
Query: 164 MSENYLQGNIPVQLNNLKSLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPI 218
+++ ++ +++ + + N++ L N+ + + L+ N + L
Sbjct: 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141
Query: 219 ALLRSSTLLTLDLRDNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIM 277
+ L TL + +N L RI + ++L L L N L + + L
Sbjct: 142 IFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA--- 197
Query: 278 DLSRNRLN 285
++S N L+
Sbjct: 198 NVSYNLLS 205
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 50/282 (17%), Positives = 97/282 (34%), Gaps = 16/282 (5%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
+ + +L L + NN + L + L+ +D+S N E + + +M+
Sbjct: 223 INVVRGPVNVELTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
L L +S N L +L LDLS+N+ + N L +LYLD+N
Sbjct: 280 LERLYISNNRLV-ALNLYG-QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336
Query: 122 SGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLK 181
+ + L+ L +S+N + + F ++ + + I QL +
Sbjct: 337 V-TLKLSTHHT--LKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH-- 389
Query: 182 SLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP 241
+ L ++ + + + + + G +P
Sbjct: 390 --GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVP 447
Query: 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNR 283
Q NE+ V LR +Q Q+ Q + L + +
Sbjct: 448 LQGNEQLEAEVNELR-AEVQQLTNEQIQQEQLLQGLHAEIDT 488
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 57/255 (22%), Positives = 94/255 (36%), Gaps = 16/255 (6%)
Query: 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT 73
+ +S + +P I L++ N + ++ +LT L LS N +
Sbjct: 10 TEIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 74 GKLPRPIVSSCL-SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS 132
K SL +LDLS N + N++ L L L +++ + S
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124
Query: 133 -TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFIDLSE 190
L L++S+ S L VL M+ N Q N L++L F+DLS+
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 191 NSLISLSNLSFV-----KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI- 244
L LS +F + + + +N L ++L LD N + Q
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQEL 243
Query: 245 -NERSNLHVLLLRGN 258
+ S+L L L N
Sbjct: 244 QHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 4e-17
Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 13/215 (6%)
Query: 8 AKYDKLRHLDISSNNFSGK-LPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILD 66
K +L L +SSN S K L YLD+S N + + +++L LD
Sbjct: 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107
Query: 67 LSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGK 124
+N + S +L +LD+S+ + ++ N + L+ L L + N F
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQEN 165
Query: 125 MTDGLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSL 183
+ + L L++S L P + S L VL MS N L SL
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225
Query: 184 EFIDLSENSLISLSNLSFV------KHIYLQNNAI 212
+ +D S N +++ + L N
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 48/233 (20%), Positives = 78/233 (33%), Gaps = 35/233 (15%)
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDN 118
T L+L N LP + L L LS+N + + T L L L
Sbjct: 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN 178
N M+ L L L+ ++ L + FSV
Sbjct: 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-----MSEFSVFL------------------ 123
Query: 179 NLKSLEFIDLSENSLISLSNLSFV-----KHIYLQ-NNAIKGLIPIALLRSSTLLTLDLR 232
+L++L ++D+S N F + + + N+ + +P L LDL
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 233 DNKLFGRIPHQI-NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
+L ++ N S+L VL + N L L ++D S N +
Sbjct: 184 QCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 10/186 (5%)
Query: 109 TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLS--GDIPHWIGNFSVLSVLLMSE 166
+ L L++N T L L++S+N LS G + L L +S
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 167 NYLQGNIPVQLNNLKSLEFIDLSENSLISLS------NLSFVKHIYLQNNAIKGLIPIAL 220
N + + L+ LE +D ++L +S +L + ++ + + +
Sbjct: 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 221 LRSSTLLTLDLRDNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDL 279
S+L L + N I NL L L L+ P L L ++++
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 280 SRNRLN 285
S N
Sbjct: 207 SHNNFF 212
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 11/141 (7%)
Query: 159 LSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS-------NLSFVKHIYLQNNA 211
+ L + N LQ + L L + LS N L + +K++ L N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 212 IKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NERSNLHVLLLRGNYLQGRIPNQLCQ 270
+ + L L LD + + L + NL L + + + N +
Sbjct: 90 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN 147
Query: 271 -LRKLSIMDLSRNRLNGPIPS 290
L L ++ ++ N
Sbjct: 148 GLSSLEVLKMAGNSFQENFLP 168
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 51/270 (18%), Positives = 93/270 (34%), Gaps = 46/270 (17%)
Query: 182 SLEFIDLSENSLISL-SNL-SFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGR 239
S I + L S+ + + S + L++N ++ L + + L L L N L
Sbjct: 8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL--- 64
Query: 240 IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299
+G L +DLS N + + S +
Sbjct: 65 -------------------SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE 104
Query: 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG-S 358
F +N+ ++ ++ L L+ + L F G S
Sbjct: 105 HL-------DFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTH------TRVAFNGIFNGLS 150
Query: 359 NLNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
+L L ++GN F I +L+N+ L+LS L P +F++L ++ L++S
Sbjct: 151 SLEV---LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 418 RNKLSGQIPPQ-LTELNFLSNFNVSYNNLS 446
N + LN L + S N++
Sbjct: 208 HNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 366 LDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS-- 422
LDLS + ++ L +++ LN+S+N + L ++ LD S N +
Sbjct: 180 LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Query: 423 -----GQIPPQLTELNFLSN 437
P L LN N
Sbjct: 239 KKQELQHFPSSLAFLNLTQN 258
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 94.7 bits (235), Expect = 1e-20
Identities = 53/290 (18%), Positives = 97/290 (33%), Gaps = 31/290 (10%)
Query: 11 DKLRHLDISSNNFSGKL---PENLGIIFQKLIYLDMSKNNFEGNIPYSVGE--MKELTIL 65
+ +S N+F + + + K + N + E + + + L
Sbjct: 6 PINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSEL 64
Query: 66 DLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKM 125
L+R N + LP + + L+++ N P L L +N S +
Sbjct: 65 QLNRLNLS-SLPDNL---PPQITVLEITQNAL--ISLPE--LPASLEYLDACDNRLS-TL 115
Query: 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185
+ S L+ L+V NN L+ +P L + N L +P +L+ L
Sbjct: 116 PELPAS---LKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPTSLEVL-- 165
Query: 186 IDLSENSLISL-SNLSFVKHIYLQNNAIKGL--IPIALLRSSTLLT-LDLRDNKLFGRIP 241
+ N L L ++ + + N ++ L +P+ S R+N++ IP
Sbjct: 166 -SVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI-THIP 223
Query: 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSC 291
I ++L N L RI L Q R +
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 1e-19
Identities = 63/328 (19%), Positives = 119/328 (36%), Gaps = 38/328 (11%)
Query: 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
DK + N + + + + L +++ N ++P ++ ++T+L++++N
Sbjct: 34 DKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLP--PQITVLEITQN 90
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
LP S L++LD +N P L L +DNN + + +
Sbjct: 91 ALI-SLPELPAS----LEYLDACDNRL--STLPE--LPASLKHLDVDNNQLT-MLPELP- 139
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSE 190
LL +N NN L+ +P + L VL + N L +P +L++L D+S
Sbjct: 140 --ALLEYINADNNQLT-MLPELPTS---LEVLSVRNNQLTF-LPELPESLEAL---DVST 189
Query: 191 NSLISL--------SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242
N L SL + + N I + P +L T+ L DN L RI
Sbjct: 190 NLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRE 248
Query: 243 QINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE-A 301
+++++ Y Q R L D S + + W
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL--ADAVTAWFPENKQSDVSQI--WHAFE 304
Query: 302 TDDDSSEFFYANNVDSPVAYYNSSLELQ 329
++ ++ F + S ++ +
Sbjct: 305 HEEHANTFSAFLDRLSDTVSARNTSGFR 332
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
LD N S +P L++ L++ NN L+ +PE + L E ++ N+L+ +
Sbjct: 105 LDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALL---EYINADNNQLT-ML 155
Query: 426 PPQLTELNFLSNFNVSYNNLS 446
P T L L +V N L+
Sbjct: 156 PELPTSLEVL---SVRNNQLT 173
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNL----KMIESLDLSRNKL 421
L + N+ + +P L+ L++S NLL ++P + N++
Sbjct: 165 LSVRNNQLT-FLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219
Query: 422 SGQIPPQLTELNFLSNFNVSYNNLS 446
+ IP + L+ + N LS
Sbjct: 220 T-HIPENILSLDPTCTIILEDNPLS 243
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 5e-06
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIR----ALNLSNNLLSGAIPESFSNLKMIESLDLSRNKL 421
LD+S N +P + + N ++ IPE+ +L ++ L N L
Sbjct: 185 LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242
Query: 422 SGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQF 455
S +I L++ +++ S +
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
A + NE + + L L+ LS ++P++ I L+++
Sbjct: 34 DKWEKQALPGENRNEAVSLLK--ECLINQFSELQLNRLNLS-SLPDNL--PPQITVLEIT 88
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
+N L +P L +L + N LS
Sbjct: 89 QNALI-SLPELPASLEYL---DACDNRLS 113
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 3e-20
Identities = 50/289 (17%), Positives = 108/289 (37%), Gaps = 30/289 (10%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
LD+ +N + ++ + + L L + N P + + +L L LS+N
Sbjct: 54 TALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHF-SGKMTDGL 129
+LP + + L L + N + L + + L N S + +G
Sbjct: 113 K-ELPEKMPKT---LQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166
Query: 130 LSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFID 187
L + +++ ++ IP G L+ L + N + + L L +L +
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLG 222
Query: 188 LSENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL------ 236
LS NS+ ++ +N ++ ++L NN + +P L + + L +N +
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQGRI--PNQLCQLRKLSIMDLSRNR 283
P ++++ + L N +Q P+ + + + L +
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 56/286 (19%), Positives = 101/286 (35%), Gaps = 27/286 (9%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
LR + S K+P++ + LD+ N +K L L L N
Sbjct: 33 LRVVQCSDLGLE-KVPKD---LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS 132
+ K+ + + L+ L LS N + P M L L + N + K+ + +
Sbjct: 89 S-KISPGAFAPLVKLERLYLSKNQL--KELPEKM-PKTLQELRVHENEIT-KVRKSVFNG 143
Query: 133 -TLLRVLNVSNNMLSGDI--PHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLS 189
+ V+ + N L LS + +++ + IP L SL + L
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLD 200
Query: 190 ENSLISLSNLSFV-----KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244
N + + S + L N+I + +L + L L L +NKL ++P +
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGL 259
Query: 245 NERSNLHVLLLRGNYLQG------RIPNQLCQLRKLSIMDLSRNRL 284
+ + V+ L N + P + S + L N +
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 7e-17
Identities = 47/235 (20%), Positives = 96/235 (40%), Gaps = 19/235 (8%)
Query: 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN-YMNLTDLGSLYLDN 118
+ +LDL N T ++ + +L L L NN ++ P + L L LYL
Sbjct: 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSK 109
Query: 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS---VLLMSENYLQ-GNIP 174
N ++ + + + L+ L V N ++ + F+ L+ V+ + N L+ I
Sbjct: 110 NQLK-ELPEKMPKT--LQELRVHENEIT-KVRK--SVFNGLNQMIVVELGTNPLKSSGIE 163
Query: 175 VQ-LNNLKSLEFIDLSENSLISLSNLSFV--KHIYLQNNAIKGLIPIALLRSSTLLTLDL 231
+K L +I +++ ++ ++ ++L N I + +L + L L L
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 232 RDNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
N + + + +L L L N L ++P L + + ++ L N ++
Sbjct: 224 SFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-14
Identities = 45/247 (18%), Positives = 88/247 (35%), Gaps = 41/247 (16%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQ---KLIYLDMSKNNF-EGNIPYSV- 56
L LP L+ L + N + K+ +++ F ++I +++ N I
Sbjct: 112 LKELPEKMPKTLQELRVHENEIT-KVRKSV---FNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 57 GEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSL 114
MK+L+ + ++ N T +P+ + SL L L N L +L L
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLPP---SLTELHLDGNKI--TKVDAASLKGLNNLAKL 221
Query: 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG--- 171
L N S L ++ LR L+++NN L +P + + + V+ + N +
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 172 ---NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLT 228
P S + L N + ++ +Q + + +
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPV---------QYWEIQPSTFRCV--------YVRAA 323
Query: 229 LDLRDNK 235
+ L + K
Sbjct: 324 VQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 366 LDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424
L L GN+ + ++ L N+ L LS N +S S +N + L L+ NKL +
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254
Query: 425 IPPQLTELNFLSNFNVSYNNLS 446
+P L + ++ + NN+S
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS--- 422
LDL N+ + L+N+ L L NN +S P +F+ L +E L LS+N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 423 GQIPPQLTELNFLSN 437
++P L EL N
Sbjct: 117 EKMPKTLQELRVHEN 131
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKL-SGQ 424
L LS N+ E+P + ++ L + N ++ F+ L + ++L N L S
Sbjct: 105 LYLSKNQLK-ELP--EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161
Query: 425 IPPQ-LTELNFLSNFNVSYNNLS 446
I + LS ++ N++
Sbjct: 162 IENGAFQGMKKLSYIRIADTNIT 184
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
+ ++ + IP G ++ L+L N ++ S L + L LS N +S +
Sbjct: 176 IRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AV 231
Query: 426 PPQ-LTELNFLSNFNVSYNNLS 446
L L +++ N L
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV 253
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
+ S ++P + + L+L NN ++ F NLK + +L L NK+S +I
Sbjct: 36 VQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KI 91
Query: 426 PPQ-LTELNFLSNFNVSYNNLS 446
P L L +S N L
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLK 113
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 7e-19
Identities = 77/447 (17%), Positives = 144/447 (32%), Gaps = 43/447 (9%)
Query: 16 LDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGK 75
+D S N +P++ + QK L++S+N + + +L IL +S N
Sbjct: 5 VDRSKNGLI-HVPKD---LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-Y 59
Query: 76 LPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS-TL 134
L + L++LDLS+N +NL L L N F + +
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKH---LDLSFNAFDALPICKEFGNMSQ 116
Query: 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194
L+ L +S L I + ++ VLL+ + + + L+ + ++
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY-----GEKEDPEGLQDFNTESLHIV 171
Query: 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLL 254
+N F + + + L + + L + L+ +
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231
Query: 255 LRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANN 314
N QL + +S +L G + + +
Sbjct: 232 TTWNSFIR--ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG---------------TS 274
Query: 315 VDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFF---IGSNLNYMAGLDLSGN 371
+ + + S P + + K T + S ++ LD S N
Sbjct: 275 LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334
Query: 372 EFSGEIPWKIGQLQNIRALNLSNNLLS--GAIPESFSNLKMIESLDLSRNKLSGQIPP-- 427
+ + G L + L L N L I E + +K ++ LD+S+N +S
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394
Query: 428 --QLTELNFLSNFNVSYNNLSGPIPDK 452
L L N+S N L+ I
Sbjct: 395 CSWTKSLLSL---NMSSNILTDTIFRC 418
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 6e-16
Identities = 84/447 (18%), Positives = 153/447 (34%), Gaps = 41/447 (9%)
Query: 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLS 68
KLR L IS N L ++ Q+L YLD+S N I L LDLS
Sbjct: 43 SLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLS 98
Query: 69 RNNFTGKLPRPIVSSCL-SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTD 127
N F LP + L +L LS + +L L + + K
Sbjct: 99 FNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP 157
Query: 128 GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFID 187
L ++ + H+I + SV +V + + ++ + + N I
Sbjct: 158 EGLQD--FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL--EDNKCSYFLSIL 213
Query: 188 LSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER 247
+ LSNL+ N+ I+ L L+ +T+ + + KL G++ + +
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRIL---QLVWHTTVWYFSISNVKLQGQLDFRDFDY 270
Query: 248 SN-----LHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREAT 302
S L + + + ++I + + + C +
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS------ 324
Query: 303 DDDSSEFFYANNVDSPVAYYN--SSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNL 360
N + + L + + + + + + +
Sbjct: 325 -----------PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373
Query: 361 NYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRN 419
+ LD+S N S + +++ +LN+S+N+L+ I I+ LDL N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSN 431
Query: 420 KLSGQIPPQLTELNFLSNFNVSYNNLS 446
K+ IP Q+ +L L NV+ N L
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASNQLK 457
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 1e-15
Identities = 51/246 (20%), Positives = 90/246 (36%), Gaps = 24/246 (9%)
Query: 5 LPNAKYDKLRHLDISSNNFSGKLPENLGII----FQKLIYLDMSKNNFEGNIPYSVGEMK 60
L + + + IS+ G+L + L + + F Y
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
+ I + + + + S LD SNN +F N +LT+L +L L N
Sbjct: 301 NMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359
Query: 121 FS-----GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS---VLLMSENYLQGN 172
+MT + L+ L++S N +S D G+ S L MS N L
Sbjct: 360 LKELSKIAEMTTQM---KSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSNILTDT 414
Query: 173 IPVQLNNLKSLEFIDLSENSLISLSN----LSFVKHIYLQNNAIKGLIPIALLRSSTLLT 228
I L ++ +DL N + S+ L ++ + + +N +K + R ++L
Sbjct: 415 IFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Query: 229 LDLRDN 234
+ L N
Sbjct: 473 IWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 5e-13
Identities = 54/291 (18%), Positives = 102/291 (35%), Gaps = 17/291 (5%)
Query: 4 RLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELT 63
L N K + + KL N + L ++ + N+F + +
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF--IRILQLVWHTTVW 250
Query: 64 ILDLSRNNFTGKLPRPIVS----SCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNN 119
+S G+L S +L + ++ F Y +++ +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 120 HFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ--GNIPVQL 177
+ L+ SNN+L+ + G+ + L L++ N L+ I
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370
Query: 178 NNLKSLEFIDLSENSLISL------SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDL 231
+KSL+ +D+S+NS+ S + + + +N + I L + LDL
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDL 428
Query: 232 RDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
NK+ IP Q+ + L L + N L+ +L L + L N
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 9/198 (4%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGK--LPENLGIIFQKLIYLDMSKNNFEGNIPYSVGE 58
+ + Y+ +++I + SG + ++LD S N + + G
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346
Query: 59 MKELTILDLSRNNFTGKLPRP--IVSSCLSLDWLDLSNNNFYGQLFPNY-MNLTDLGSLY 115
+ EL L L N +L + + + SL LD+S N+ L SL
Sbjct: 347 LTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405
Query: 116 LDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPV 175
+ +N + + L ++VL++ +N + IP + L L ++ N L+
Sbjct: 406 MSSNILTDTIFRCLPPR--IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG 462
Query: 176 QLNNLKSLEFIDLSENSL 193
+ L SL+ I L N
Sbjct: 463 IFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 9e-06
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
L++S N S I L +R L +S+N + F + +E LDLS NKL
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
Query: 426 PPQLTELNFLSNFNVSYNNLSGPIPDKEQF 455
L L ++S+N +P ++F
Sbjct: 86 CHPTVNLKHL---DLSFNAFDA-LPICKEF 111
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 6e-18
Identities = 59/288 (20%), Positives = 104/288 (36%), Gaps = 32/288 (11%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
LR + S +P+ I LD+ N+ ++ L L L N
Sbjct: 35 LRVVQCSDLGLK-AVPKE---ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFY---GQLFPNYMNLTDLGSLYLDNNHFSGKMTDGL 129
+ K+ S L L +S N+ L + L L + +N K+ G+
Sbjct: 91 S-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS------LVELRIHDNRIR-KVPKGV 142
Query: 130 LSS-TLLRVLNVSNNML-SGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFID 187
S + + + N L + + L+ L +SE L IP L ++L +
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELH 199
Query: 188 LSENSLISLSNLSFV-----KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242
L N + ++ + + L +N I+ + +L TL L L +NKL R+P
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPA 258
Query: 243 QINERSNLHVLLLRGNYLQGRIPNQLCQLR------KLSIMDLSRNRL 284
+ + L V+ L N + N C + + + L N +
Sbjct: 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 29/241 (12%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
KL+ L IS N+ ++P NL L+ L + N ++ + +++ N
Sbjct: 103 KLQKLYISKNHLV-EIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYG---QLFPNYMNLTDLGSLYLDNNHFSGKMTDG 128
P L L++L +S G L L L+LD+N +
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET------LNELHLDHNKIQ-AIELE 211
Query: 129 LLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFID 187
L + L L + +N + + L L + N L +P L +LK L+ +
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270
Query: 188 LSENSLISLSNLSFV-----------KHIYLQNNAIK--GLIPIALLRSSTLLTLDLRDN 234
L N++ + F I L NN + + P + L + +
Sbjct: 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Query: 235 K 235
K
Sbjct: 331 K 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 8e-10
Identities = 49/249 (19%), Positives = 85/249 (34%), Gaps = 32/249 (12%)
Query: 181 KSLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK 235
+DL N + L L + + L NN I + A L L + N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 236 LFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNV 295
L IP + S+L L + N ++ LR ++ +++ N L N
Sbjct: 114 L-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE--------NS 162
Query: 296 PFWREATDDDSSEF--FYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYE 353
F A D + + +L ELH ++ + E
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN-----ELHLDHNK------IQAIELE 211
Query: 354 FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIES 413
+ + L L N+ + L +R L+L NN LS +P +LK+++
Sbjct: 212 DL--LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268
Query: 414 LDLSRNKLS 422
+ L N ++
Sbjct: 269 VYLHTNNIT 277
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 366 LDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424
L L N+ I + + + L L +N + S S L + L L NKLS +
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255
Query: 425 IPPQLTELNFLSNFNVSYNNLS 446
+P L +L L + NN++
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT 277
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 366 LDLSGNEFSGEIPWK-IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS-- 422
LDL N+ S E+ LQ++ AL L NN +S ++FS L+ ++ L +S+N L
Sbjct: 59 LDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 423 -GQIPPQLTELNFLSN 437
+P L EL N
Sbjct: 118 PPNLPSSLVELRIHDN 133
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
+ S +P +I + L+L NN +S + F L+ + +L L NK+S +I
Sbjct: 38 VQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KI 93
Query: 426 PPQ-LTELNFLSNFNVSYNNLS 446
+ + L L +S N+L
Sbjct: 94 HEKAFSPLRKLQKLYISKNHLV 115
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 47/280 (16%), Positives = 104/280 (37%), Gaps = 39/280 (13%)
Query: 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSR 69
++ + + S ++P+ I YL++ +NN + + + L +L L R
Sbjct: 53 SNQFSKVVCTRRGLS-EVPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108
Query: 70 NNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKMTD 127
N+ ++ + SL+ L+L +N + P+ L+ L L+L NN +
Sbjct: 109 NSIR-QIEVGAFNGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNNPIE-SIPS 164
Query: 128 GLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEF 185
+ L L++ L+ I L +L++
Sbjct: 165 YAFNRVPSLMRLDLGEL-----------------------KKLE-YISEGAFEGLFNLKY 200
Query: 186 IDLSENSLISL---SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242
++L ++ + + L ++ + + N + P + S+L L + ++++ +
Sbjct: 201 LNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260
Query: 243 QINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
+ ++L L L N L + LR L + L N
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 41/184 (22%), Positives = 66/184 (35%), Gaps = 7/184 (3%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILDLSRN 70
L L++ N + +P KL L + N E +IP + L LDL
Sbjct: 124 SLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL 181
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
+ +L +L+L N + PN L L L + NHF
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFH 239
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFIDLS 189
+ L+ L V N+ +S + + L L ++ N L ++P L+ L + L
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLH 298
Query: 190 ENSL 193
N
Sbjct: 299 HNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 32/228 (14%)
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNF---YGQLFPNYMNLTDLGSLYLD 117
+ + + +R + ++P+ I S+ +L+L NN F + L L L L
Sbjct: 55 QFSKVVCTRRGLS-EVPQGIPSN---TRYLNLMENNIQMIQADTFRH---LHHLEVLQLG 107
Query: 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ- 176
N L L + +N L+ S L L + N ++ +IP
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166
Query: 177 LNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
N + SL +DL E + Y+ A +GL L L+L +
Sbjct: 167 FNRVPSLMRLDLGELKKLE----------YISEGAFEGL--------FNLKYLNLGMCNI 208
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
+P+ + L L + GN+ P L L + + +++
Sbjct: 209 K-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 8e-10
Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 11/152 (7%)
Query: 141 SNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL---- 196
+ LS ++P I S L + EN +Q +L LE + L NS+ +
Sbjct: 62 TRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118
Query: 197 -SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER-SNLHVL- 253
+ L+ + + L +N + + A S L L LR+N + IP R +L L
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLD 177
Query: 254 LLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
L L+ L L ++L +
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWK-IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
+ L + L++SGN F EI L +++ L + N+ +S +F L + L+L
Sbjct: 215 TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273
Query: 417 SRNKLSGQIPPQ-LTELNFLSNFNVSYNNL 445
+ N LS +P T L +L ++ +N
Sbjct: 274 AHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
+L+++ L L N +I L ++ L L +N L+ +F L + L L
Sbjct: 96 RHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154
Query: 417 SRNKLSGQIP-------PQLTELNFLSNFN 439
N + IP P L L+ L
Sbjct: 155 RNNPIE-SIPSYAFNRVPSLMRLD-LGELK 182
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
+ + S E+P I N R LNL N + ++F +L +E L L RN + QI
Sbjct: 59 VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QI 114
Query: 426 PPQ-LTELNFLSNFNVSYNNLS 446
L L+ + N L+
Sbjct: 115 EVGAFNGLASLNTLELFDNWLT 136
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
+ L + L+L N + IP L +R L L NN + +F+ + + LDL
Sbjct: 120 NGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
Query: 417 SRNKLSGQIPPQ-LTELNFLSNFNVSYNNLS 446
K I L L N+ N+
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
+ + + LDL + I L N++ LNL + +P + + L +E L++
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEM 225
Query: 417 SRNKLSGQIPPQ-LTELNFLSNFNVSYNNLS 446
S N +I P L+ L V + +S
Sbjct: 226 SGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS 255
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 4e-17
Identities = 62/307 (20%), Positives = 106/307 (34%), Gaps = 38/307 (12%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILDLSRNN 71
+ ++D+S N+ + +L E Q L +L + + I + + L IL L N
Sbjct: 32 VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKMTDGL 129
F +L + +L+ L L+ N G + LT L L L +N+
Sbjct: 91 FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 130 LSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLL----------MSENYLQGNIPVQLN 178
+ VL+++ N + + NF L M+E +L
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 179 NLKSLEFIDLSENSLISLSNLSFVKHI------------------YLQNNAIKGLIPIAL 220
S+ +DLS N F I + K
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 221 --LRSSTLLTLDLRDNKLFGRIPHQI-NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIM 277
L +S + T DL +K+F + + + ++L L L N + N L L +
Sbjct: 270 KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 278 DLSRNRL 284
+LS+N L
Sbjct: 329 NLSQNFL 335
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 4e-17
Identities = 73/388 (18%), Positives = 136/388 (35%), Gaps = 55/388 (14%)
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN-YMNLTDLGSLYLDNNH 120
+ +DLS N+ +L S L +L + + N + L+ L L LD N
Sbjct: 32 VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 121 FSGKMTDGLLSS-TLLRVLNVSNNML-SGDIPH-WIGNFSVLSVLLMSENYLQGNIPVQL 177
F ++ G + L VL ++ L + + + L +L++ +N ++ P
Sbjct: 91 FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 178 -NNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
N++ +DL+ N + S+ + LLR S++ D+ + L
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH---------FTLLRLSSITLQDMNEYWL 200
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLS-IMDLSRNRLNGPIPSCLGNV 295
+ +++ L L GN + + + + I L + S
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260
Query: 296 PFWREATDDDSSEFFYANNVDSPVAYYN--SSLELQLPVELHFRQDQQVGAKFVTKNRYE 353
+ D+ + + A+ V + + +L +
Sbjct: 261 ---FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF------------------- 298
Query: 354 FFIGSNLNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIE 412
++L L L+ NE + +I L ++ LNLS N L F NL +E
Sbjct: 299 ----TDLEQ---LTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 413 SLDLSRNKLSGQIPPQ----LTELNFLS 436
LDLS N + + Q L L L+
Sbjct: 351 VLDLSYNHIR-ALGDQSFLGLPNLKELA 377
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 48/258 (18%), Positives = 89/258 (34%), Gaps = 42/258 (16%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKL-------------IYLDMSKNNFEGNIPYSVGE 58
+ LD++ N + E DM++ + +
Sbjct: 155 RFHVLDLTFNKVK-SICEE---DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 59 MKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMN----------- 107
+T LDLS N F + + + L +N Y
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 108 ---LTDLGSLYLDNNHFSGKMTDGLLSS-TLLRVLNVSNNMLSGDIPHWI-GNFSVLSVL 162
+ + + L + + + S T L L ++ N ++ I + L L
Sbjct: 271 GLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL 328
Query: 163 LMSENYLQGNIPVQL-NNLKSLEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLI 216
+S+N+L +I ++ NL LE +DLS N + +L + SF +K + L N +K +
Sbjct: 329 NLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Query: 217 PIALLRSSTLLTLDLRDN 234
R ++L + L N
Sbjct: 388 DGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 50/316 (15%), Positives = 106/316 (33%), Gaps = 61/316 (19%)
Query: 182 SLEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPIALLRSSTLLT-LDLRDNK 235
+ ++DLS NS+ L+ SF ++ + ++ +I R + L L L N+
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 236 LFGRIPHQINER-SNLHVLLLRGNYLQG-RIP-----------------NQL-------- 268
++ +NL VL L L G + N +
Sbjct: 91 F-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 269 -CQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLE 327
+R+ ++DL+ N++ + + + + Y+ +
Sbjct: 150 FLNMRRFHVLDLTFNKV-----KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Query: 328 LQLPVELHFRQDQQVGAKFVTKNRYEFFIGS-----------NLNYMAGLDLSGNEFSGE 376
P + + ++ + F + + +Y G F
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264
Query: 377 IPWKIGQLQ--NIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPP----QLT 430
+ L+ ++ +LS + + + FS+ +E L L++N+++ +I LT
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLT 323
Query: 431 ELNFLSNFNVSYNNLS 446
L L N+S N L
Sbjct: 324 HLLKL---NLSQNFLG 336
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 25/201 (12%)
Query: 12 KLRHLDISSNNFSGKLPENL--GIIFQKLIYLDMSKNNFEG------------NIPYSVG 57
+ LD+S N F + + I K+ L +S + G N +
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL 272
Query: 58 EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN-YMNLTDLGSLYL 116
E + DLS++ L + + S L+ L L+ N ++ N + LT L L L
Sbjct: 273 EASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNL 330
Query: 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS---VLLMSENYLQGNI 173
N + + L VL++S N + + +F L L + N L+ ++
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGD--QSFLGLPNLKELALDTNQLK-SV 386
Query: 174 PVQ-LNNLKSLEFIDLSENSL 193
P + L SL+ I L N
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPW 407
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 2e-16
Identities = 43/232 (18%), Positives = 85/232 (36%), Gaps = 17/232 (7%)
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN-YMNLTDLGSLYLDNN 119
+L+L N + L+ L LS N+ + + L +L +L L +N
Sbjct: 65 NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDN 122
Query: 120 HFSGKMTDGLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVL----LMSENYLQGNIP 174
+ + +G + L+ L + NN + IP F+ + L L L I
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIE-SIP--SYAFNRIPSLRRLDLGELKRLS-YIS 177
Query: 175 VQ-LNNLKSLEFIDLSENSLISL---SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLD 230
L +L +++L+ +L + + L + + L N + + P + L L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 231 LRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
+ +++ + + +L + L N L + L L + L N
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 52/235 (22%), Positives = 87/235 (37%), Gaps = 22/235 (9%)
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNF---YGQLFPNYMNLTDLGSLYLD 117
+ + + R N ++P I ++ L+L N F + +L L L
Sbjct: 44 QFSKVICVRKNLR-EVPDGISTN---TRLLNLHENQIQIIKVNSFKHLRHLE---ILQLS 96
Query: 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQL 177
NH L L + +N L+ S L L + N ++ +IP
Sbjct: 97 RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYA 155
Query: 178 -NNLKSLEFIDLSENSLIS------LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLD 230
N + SL +DL E +S LS ++++ L ++ IP L L LD
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELD 213
Query: 231 LRDNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
L N L I + +L L + + +Q N L+ L ++L+ N L
Sbjct: 214 LSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 7/184 (3%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILDLSRN 70
L L++ N + +P + KL L + N E +IP + L LDL
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL 170
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
+ +L +L+L+ N + PN L L L L NH S
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQ 228
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFIDLS 189
L+ L + + + + N L + ++ N L +P L LE I L
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLH 287
Query: 190 ENSL 193
N
Sbjct: 288 HNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 11/152 (7%)
Query: 141 SNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL---- 196
L ++P I + +L + EN +Q +L+ LE + LS N + ++
Sbjct: 51 VRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107
Query: 197 -SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NERSNLHVL- 253
+ L+ + + L +N + + A + S L L LR+N + IP N +L L
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLD 166
Query: 254 LLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
L L L L ++L+ L
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
+L ++ L LS N I L N+ L L +N L+ +F L ++ L L
Sbjct: 85 KHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143
Query: 417 SRNKLSGQIP-------PQLTELNFLSNFN 439
N + IP P L L+ L
Sbjct: 144 RNNPIE-SIPSYAFNRIPSLRRLD-LGELK 171
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
+ L + LDLSGN S I L +++ L + + + +F NL+ + ++L
Sbjct: 204 TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262
Query: 417 SRNKLSG------QIPPQLTELNFLSN 437
+ N L+ L ++ N
Sbjct: 263 AHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
+ E+P I N R LNL N + SF +L+ +E L LSRN + I
Sbjct: 48 VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TI 103
Query: 426 PPQ-LTELNFLSNFNVSYNNLS 446
L L+ + N L+
Sbjct: 104 EIGAFNGLANLNTLELFDNRLT 125
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
+ L + L+L N + IP L ++ L L NN + +F+ + + LDL
Sbjct: 109 NGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167
Query: 417 SRNKLSGQIPPQ----LTELNFLSNFNVSYNNLS 446
K I L+ L +L N++ NL
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYL---NLAMCNLR 198
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 366 LDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424
LDL + I L N+R LNL+ L IP + + L ++ LDLS N LS
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-A 221
Query: 425 IPPQ-LTELNFLSNFNVSYNNLS 446
I P L L + + +
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQ 244
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 3e-16
Identities = 46/243 (18%), Positives = 78/243 (32%), Gaps = 23/243 (9%)
Query: 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN---YMNLTDLGSLYL 116
+ L L + + LSL L + ++ + ++ L L L
Sbjct: 43 RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102
Query: 117 DNNHFSGKMTDGLLSSTL--LRVLNVSNNMLSGDIPHWIGNFSV----LSVLLMSENYLQ 170
+N +G LL +T L +LN+ N + L VL +++ +
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162
Query: 171 GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLD 230
Q+ +L +DLS+N + L I L P+ L +
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGL------------ISALCPLKFPTLQVLALRN 210
Query: 231 LRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ-LRKLSIMDLSRNRLNGPIP 289
G R L L L N L+ C +L+ ++LS L +P
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VP 269
Query: 290 SCL 292
L
Sbjct: 270 KGL 272
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 2e-15
Identities = 54/290 (18%), Positives = 91/290 (31%), Gaps = 38/290 (13%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGE---MKELTILDLSR 69
L +L + + I L L + I + + L L L
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104
Query: 70 NNFTGKLPRPIVS-SCLSLDWLDLSNNNFYGQLFPNYM----NLTDLGSLYLDNNHFSGK 124
TG P P++ + L+ L+L N ++ + L L + H
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164
Query: 125 MTDGLLSSTLLRVLNVSNNMLSGDIPHWI----GNFSVLSVLLMSENYLQ---GNIPVQL 177
+ + L L++S+N G+ F L VL + ++ G
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224
Query: 178 NNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237
L+ +DLS NSL + S L +L+L L
Sbjct: 225 AARVQLQGLDLSHNSLRDA------------------AGAPSCDWPSQLNSLNLSFTGL- 265
Query: 238 GRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGP 287
++P + + L VL L N L R P +L ++ + L N
Sbjct: 266 KQVPKGL--PAKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 5e-15
Identities = 51/285 (17%), Positives = 82/285 (28%), Gaps = 46/285 (16%)
Query: 171 GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLR--SSTLLT 228
++ ++ +++ + + +S ++ + L+N + G P LL L
Sbjct: 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125
Query: 229 LDLRDNKLFGRIPH----QINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
L+LR+ R Q + L VL + + Q+ LS +DLS N
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Query: 285 NGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGA 344
G P N + S+L
Sbjct: 186 LGERGLISALCPLK----FPTLQVLALRNAGMETPSGVCSALAAARV------------- 228
Query: 345 KFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQ-LQNIRALNLSNNLLSGAIPE 403
L LDLS N + +LNLS L
Sbjct: 229 --------------QLQG---LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271
Query: 404 SFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGP 448
+ L LDLS N+L P EL + N ++ N
Sbjct: 272 LPAKL---SVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-10
Identities = 30/155 (19%), Positives = 43/155 (27%), Gaps = 17/155 (10%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGII---FQKLIYLDMSKNNFE---GNIPYS 55
+ L LD+S N G+ + F L L + E G
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223
Query: 56 VGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFY---GQLFPNYMNLTDLG 112
+L LDLS N+ P L+ L+LS L L
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK------LS 277
Query: 113 SLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSG 147
L L N + L + L++ N
Sbjct: 278 VLDLSYNRLDRNPSPDELPQ--VGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 4e-10
Identities = 44/204 (21%), Positives = 68/204 (33%), Gaps = 15/204 (7%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSG---KLPENLGIIFQKLIYLDMSKNNFEGNIPYSVG 57
P L A L L++ + +++ L E + L L +++ + V
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170
Query: 58 EMKELTILDLSRNNFTG--KLPRPIVSSCL-SLDWLDLSNNNF---YGQLFPNYMNLTDL 111
L+ LDLS N G L + +L L L N G L
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230
Query: 112 GSLYLDNNHFSGKMTDGLLS-STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170
L L +N + L LN+S L +P + + LSVL +S N L
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRLD 287
Query: 171 GNIPVQLNNLKSLEFIDLSENSLI 194
P L + + L N +
Sbjct: 288 R-NPSPD-ELPQVGNLSLKGNPFL 309
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 3e-08
Identities = 42/264 (15%), Positives = 77/264 (29%), Gaps = 46/264 (17%)
Query: 194 ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER---SNL 250
+ S + + +++S +L L +R ++ RI S L
Sbjct: 38 LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97
Query: 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFF 310
L L + G P L + + L+ ++
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--------------------- 136
Query: 311 YANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSG 370
ELQ ++ + A + + + + L+ LDLS
Sbjct: 137 -----------DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST---LDLSD 182
Query: 371 NEFSGEIPWKI----GQLQNIRALNLSNNL---LSGAIPESFSNLKMIESLDLSRNKLSG 423
N GE + ++ L L N SG + ++ LDLS N L
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242
Query: 424 QIPPQL-TELNFLSNFNVSYNNLS 446
+ L++ N+S+ L
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLK 266
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 7/93 (7%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFS----NLKMIESLDLSRNK- 420
L ++ ++ + L+LS+N G + ++ L L
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 421 --LSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451
SG L ++S+N+L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 9e-05
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 366 LDLSGNEFSGEIPWKIGQLQ--NIRALNLSNNLLSG---AIPESFSNLKM-IESLDLSRN 419
L L E +G P + + ++ LNL N + + E LK ++ L +++
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 420 KLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQF 455
Q+ LS ++S N G
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 9e-16
Identities = 45/209 (21%), Positives = 71/209 (33%), Gaps = 17/209 (8%)
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNF---YGQLFPNYMNLTDLGSLYLD 117
+ L N + +P +C +L L L +N F L L L L
Sbjct: 33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAF---TGLALLEQLDLS 88
Query: 118 NNHFSGKMTDGLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ 176
+N + L L++ L P + L L + +N LQ +P
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDD 147
Query: 177 -LNNLKSLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLD 230
+L +L + L N + S+ L + + L N + + P A L+TL
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 231 LRDNKLFGRIPHQI-NERSNLHVLLLRGN 258
L N L +P + L L L N
Sbjct: 208 LFANNL-SALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-13
Identities = 47/231 (20%), Positives = 79/231 (34%), Gaps = 20/231 (8%)
Query: 63 TILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNF---YGQLFPNYMNLTDLGSLYLDNN 119
+ +P I ++ + L N F NLT L+L +N
Sbjct: 14 VTTSCPQQGLQ-AVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLT---ILWLHSN 66
Query: 120 HFSGKMTDGLLSSTLLRVLNVSNNMLSGDIP-HWIGNFSVLSVLLMSENYLQGNIPVQ-L 177
+ LL L++S+N + L L + LQ +
Sbjct: 67 VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLF 125
Query: 178 NNLKSLEFIDLSENSLISLSNLSFV-----KHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232
L +L+++ L +N+L +L + +F H++L N I + A +L L L
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185
Query: 233 DNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
N++ + L L L N L L LR L + L+ N
Sbjct: 186 QNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 11/187 (5%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILDLSRN 70
L L + SN + ++ L LD+S N ++ + + L L L R
Sbjct: 57 NLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKMTDG 128
+L + +L +L L +N Q P+ +L +L L+L N S + +
Sbjct: 116 GLQ-ELGPGLFRGLAALQYLYLQDNAL--QALPDDTFRDLGNLTHLFLHGNRIS-SVPER 171
Query: 129 LLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFI 186
L L + N ++ PH + L L + N L +P + L L++L+++
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYL 230
Query: 187 DLSENSL 193
L++N
Sbjct: 231 RLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 10/162 (6%)
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFIDLSE 190
+ + + N +S L++L + N L I L LE +DLS+
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89
Query: 191 NSLIS------LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244
N+ + L + ++L ++ L P + L L L+DN L +P
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDT 148
Query: 245 NER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
NL L L GN + L L + L +NR+
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
+ L GN S +N+ L L +N+L+ +F+ L ++E LDLS N +
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 426 PPQ-LTELNFLSNFNVSYNNLS 446
P L L ++ L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQ 118
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 366 LDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424
L L N +P L N+ L L N +S +F L ++ L L +N+++
Sbjct: 134 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-H 191
Query: 425 IPPQ----LTELNFLSNFNVSYNNLS 446
+ P L L L + NNLS
Sbjct: 192 VHPHAFRDLGRLMTL---YLFANNLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
L + L L E+ + L ++ L L +N L ++F +L + L L
Sbjct: 102 HGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160
Query: 417 SRNKLSGQIPPQ-LTELNFLSNFNVSYNNLS 446
N++S +P + L+ L + N ++
Sbjct: 161 HGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 25/245 (10%)
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDN 118
+ LDLS N T + + C++L L L++N +L L L L
Sbjct: 53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSY 109
Query: 119 NHFSGKMTDGLLSS-TLLRVLNVSNNMLSGDIPH--WIGNFSVLSVLLMSENYLQGNIPV 175
N+ S ++ + L LN+ N + + + L +L + I
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQR 167
Query: 176 Q-LNNLKSLEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPIALLRSSTLLTL 229
+ L LE +++ + L S S V H+ L L+ I + +S++ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227
Query: 230 DLRDNKLFGRIPHQI--------NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281
+LRD L ++ ++ + + L ++ L Q+ L ++ SR
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286
Query: 282 NRLNG 286
N+L
Sbjct: 287 NQLKS 291
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 42/243 (17%), Positives = 88/243 (36%), Gaps = 16/243 (6%)
Query: 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILD 66
+ L+ L ++SN + + E+ L +LD+S N N+ S + LT L+
Sbjct: 73 QRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130
Query: 67 LSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN-YMNLTDLGSLYLDNNHFSGKM 125
L N + + S L L + N + + ++ + LT L L +D +
Sbjct: 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190
Query: 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQL-------- 177
L S + L + + ++ S + L + + L +L
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250
Query: 178 NNLKSLEFIDLSENSLISL----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233
+ + +++ SL + + +S + + N +K + R ++L + L
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310
Query: 234 NKL 236
N
Sbjct: 311 NPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 54/298 (18%), Positives = 100/298 (33%), Gaps = 43/298 (14%)
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQL-NNLKSLEFIDLSE 190
+ ++ L++SNN ++ + L L+++ N + I ++L SLE +DLS
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109
Query: 191 NSLISLSNLSFVK-----HIYLQNNAIKGLIPIALLRS-STLLTLDLRDNKLFGRIPHQI 244
N L +LS+ F + L N K L +L + L L + + F +I +
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
Query: 245 NER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATD 303
+ L L + + LQ P L ++ +S + L + L +
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-----ILLLEIFVDV---- 220
Query: 304 DDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYM 363
SS+E L R F + E
Sbjct: 221 -------------------TSSVE-----CLELRDTDLDTFHFSELSTGETNSLIKKFTF 256
Query: 364 AGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKL 421
+ ++ ++ + Q+ + L S N L F L ++ + L N
Sbjct: 257 RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 43/241 (17%), Positives = 85/241 (35%), Gaps = 27/241 (11%)
Query: 63 TILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNF---YGQLFPNYMNLTDLGSLYLDNN 119
I S + +P + + + LDLSNN +NL +L L +N
Sbjct: 34 GICKGSSGSLN-SIPSGLTEA---VKSLDLSNNRITYISNSDLQRCVNLQ---ALVLTSN 86
Query: 120 HFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQL-N 178
+ D S L L++S N LS W S L+ L + N + L +
Sbjct: 87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146
Query: 179 NLKSLEFIDLSENSLIS------LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232
+L L+ + + + + L+F++ + + + ++ P +L + L L
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206
Query: 233 DNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLC--------QLRKLSIMDLSRNR 283
+ + + S++ L LR L ++L + + ++
Sbjct: 207 MKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265
Query: 284 L 284
L
Sbjct: 266 L 266
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 49/275 (17%), Positives = 85/275 (30%), Gaps = 55/275 (20%)
Query: 185 FIDLSENSLISL-SNL-SFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242
S SL S+ S L VK + L NN I + L R L L L N + I
Sbjct: 35 ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEE 93
Query: 243 QI-NERSNLHVLLLRGNYLQGRIPNQLCQ-LRKLSIMDLSRNRLNGPIPSCLGNVPFWRE 300
+ +L L L NYL + + + L L+ ++L N LG
Sbjct: 94 DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPY-----KTLG------- 140
Query: 301 ATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG-SN 359
++S F + + + ++ + F G +
Sbjct: 141 ----ETSLFSHLTKLQILRVGNMDTFT-KIQRKD--------------------FAGLTF 175
Query: 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRN 419
L L++ ++ P + +QN+ L L + +E L+L
Sbjct: 176 LEE---LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Query: 420 KLSGQIPPQLTELNF--------LSNFNVSYNNLS 446
L +L+ N ++ +L
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 27/283 (9%)
Query: 172 NIPVQLNNLKSLEFIDLSENSLISLS-----NLSFVKHIYLQNNAIKGLIPIALLRSSTL 226
+ + +L DLS N + +S ++ + L +N I + + +L
Sbjct: 49 GLTEAVKSL------DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 227 LTLDLRDNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQL-CQLRKLSIMDLSRNRL 284
LDL N L + + S+L L L GN + L L KL I+ +
Sbjct: 103 EHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161
Query: 285 NGPIPS-CLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVG 343
I + F E A+++ S S++ + LH +Q +
Sbjct: 162 FTKIQRKDFAGLTFLEELE-------IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214
Query: 344 AKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPE 403
FV + + +E S + + R + +++ L + +
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHF--SELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271
Query: 404 SFSNLKMIESLDLSRNKLSGQIPPQ-LTELNFLSNFNVSYNNL 445
+ + + L+ SRN+L +P L L + N
Sbjct: 272 LLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 68/412 (16%), Positives = 134/412 (32%), Gaps = 57/412 (13%)
Query: 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSN 94
F + S ++ LT LD ++ T + L L ++
Sbjct: 20 FASEVAAAFEMQA---TDTISEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTS 73
Query: 95 NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
NN + T+L L D+N + L T L LN N L+ + +
Sbjct: 74 NNITT---LDLSQNTNLTYLACDSNKLTNLDVTPL---TKLTYLNCDTNKLT-KLD--VS 124
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKG 214
+L+ L + N L L L+ + + + ++ + + + N I
Sbjct: 125 QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184
Query: 215 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274
L ++ + L L+ N + ++ +N+ L L N L I + L +L
Sbjct: 185 L-DVSQNKL--LNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQL 235
Query: 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVEL 334
+ D S N L S L + ++ ++ +N+ L
Sbjct: 236 TYFDCSVNPLTELDVSTLSKL----------TTLHCIQTDLLEIDLTHNTQLI-----YF 280
Query: 335 HFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSN 394
+++ VT N + L LD + E+ + Q + L L+N
Sbjct: 281 QAEGCRKIKELDVTHN-------TQLYL---LDCQAAGIT-ELD--LSQNPKLVYLYLNN 327
Query: 395 NLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
L+ + S+ ++SL + + ++ L+N +
Sbjct: 328 TELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTI 374
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 7e-15
Identities = 55/284 (19%), Positives = 98/284 (34%), Gaps = 28/284 (9%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
L L KL +L+ +N + L YL+ ++N V +
Sbjct: 97 LTNLDVTPLTKLTYLNCDTNKLTKLDVSQN----PLLTYLNCARNTLT---EIDVSHNTQ 149
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
LT LD N KL V+ L LD S N + L L D N+
Sbjct: 150 LTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNI 203
Query: 122 SGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLK 181
+ L + L L+ S+N L+ +I + + L+ S N L + V + L
Sbjct: 204 TKL---DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDV--STLS 254
Query: 182 SLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP 241
L + + L+ + + IY Q + + + + ++ L LD + + +
Sbjct: 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI-TELD 313
Query: 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
+++ L L L L + + KL + +
Sbjct: 314 --LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 69/428 (16%), Positives = 132/428 (30%), Gaps = 45/428 (10%)
Query: 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSN 94
L LD ++ ++ + ++ LT L + NN T L +S +L +L +
Sbjct: 41 LATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDS 94
Query: 95 NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
N LT L D N + + + LL LN + N L+ +I +
Sbjct: 95 NKLTNLDVTPLTKLT---YLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VS 145
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL--ISLSNLSFVKHIYLQNNAI 212
+ + L+ L N + + L +D S N + + +S + + N I
Sbjct: 146 HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNI 203
Query: 213 KGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR 272
L + L LD NKL I + + L N L + L +L
Sbjct: 204 TKL-DLNQNIQ--LTFLDCSSNKL-TEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLT 257
Query: 273 KLSIMDLSRNRLNG-PIPSCLGNVPFWREATDDDSSEFFYAN-NVDSPVAYYN--SSLEL 328
L + L + + F E N + + L+L
Sbjct: 258 TL---HCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDL 314
Query: 329 QLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIR 388
+L + ++ S+ + L + +G++ +
Sbjct: 315 SQNPKL-----VYL---YLNNTELTELDVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALN 364
Query: 389 ALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSG---QIPPQLTELNFLSNFNVSYNNL 445
+ E+ +N + ++ G I P + + +++ NL
Sbjct: 365 NNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENL 424
Query: 446 SGPIPDKE 453
S P
Sbjct: 425 STDNPAVT 432
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 45/282 (15%), Positives = 84/282 (29%), Gaps = 29/282 (10%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMK 60
+ + L LD +++ + + L L + NN + + +
Sbjct: 32 ATDTISEEQLATLTSLDCHNSSIT-DMTGIEK--LTGLTKLICTSNNIT-TLD--LSQNT 85
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
LT L N T L V+ L +L+ N + L L N
Sbjct: 86 NLTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNT 138
Query: 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNL 180
+ + +T L L+ N + + + L+ L S N + + ++
Sbjct: 139 LT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQN 190
Query: 181 KSLEFIDLSENSL--ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFG 238
K L ++ N++ + L+ + + +N + I + L L D N L
Sbjct: 191 KLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-IDVTPLTQ--LTYFDCSVNPL-T 246
Query: 239 RIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLS 280
+ S L L L QL
Sbjct: 247 ELDVSTL--SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 42/236 (17%), Positives = 85/236 (36%), Gaps = 29/236 (12%)
Query: 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTI 64
L ++ L L+ +NN + KL N +L +LD S N I V + +LT
Sbjct: 185 LDVSQNKLLNRLNCDTNNIT-KLDLNQ---NIQLTFLDCSSNKLT-EID--VTPLTQLTY 237
Query: 65 LDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL-YLDNNHFSG 123
D S N T +L VS+ L L + ++LT L Y
Sbjct: 238 FDCSVNPLT-ELD---VSTLSKLTTLHCIQTDL------LEIDLTHNTQLIYFQAEGCRK 287
Query: 124 KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSL 183
+ +T L +L+ ++ ++ + L L ++ L + +++ L
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKL 341
Query: 184 EFIDLSENSLISLSNLSFVKHI---YLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
+ + + S++ + + + + L ++ LT+ + + L
Sbjct: 342 KSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETL--TNNSLTIAVSPDLL 395
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 43/293 (14%), Positives = 91/293 (31%), Gaps = 46/293 (15%)
Query: 157 SVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSF---VKHIYLQNNAIK 213
+ + + +Q + L +L +D +S+ ++ + + + +N I
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT 77
Query: 214 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRK 273
+ ++ + L L NKL + + + L L N L +Q L
Sbjct: 78 T-LDLSQNTN--LTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131
Query: 274 LSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVE 333
L + +RN L S + + + + L
Sbjct: 132 L---NCARNTLTEIDVSHNTQL---------TELDCHLNKKITKLDVTPQTQLT-----T 174
Query: 334 LHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLS 393
L + N+ S + L+ N + ++ + Q + L+ S
Sbjct: 175 LD-----------CSFNKITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCS 220
Query: 394 NNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
+N L+ + L + D S N L+ L++L L + +L
Sbjct: 221 SNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL 267
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 14/135 (10%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+L + +L +L LD + + + +L L L+
Sbjct: 276 QLIYFQAEGCRKIKELDVTH---NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTE 329
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
T +L VS L L N + Q F + + L + + + L +
Sbjct: 330 LT-ELD---VSHNTKLKSLSCVNAHI--QDFSSVGKIPALNNNFEAEGQTITMPKETLTN 383
Query: 132 STLLRVLNVSNNMLS 146
++L + VS ++L
Sbjct: 384 NSL--TIAVSPDLLD 396
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 51/258 (19%), Positives = 100/258 (38%), Gaps = 23/258 (8%)
Query: 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSN 94
I + K+N + ++ +T L T V +L L+L +
Sbjct: 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKD 72
Query: 95 NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
N NLT + L L N K + ++ L++++ ++ P +
Sbjct: 73 NQI--TDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN---SLISLSNLSFVKHIYLQNNA 211
S L VL + N + NI L L +L+++ + L L+NLS + + +N
Sbjct: 127 GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184
Query: 212 IKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQL 271
I + P+A L + L+ + L++N++ P + SNL ++ L + +
Sbjct: 185 ISDISPLASLPN--LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN---QPVFYN 237
Query: 272 RKLSIMDLSRNRLNGPIP 289
L + ++ + PI
Sbjct: 238 NNLVVPNVVKGPSGAPIA 255
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 23/234 (9%)
Query: 8 AKYDKLRHLDISSNNFSGKLPENLGII--FQKLIYLDMSKNNFEGNIPYSVGEMKELTIL 65
A D + L + + + LI L++ N ++ + + ++T L
Sbjct: 38 ADLDGITTLSAFGTGVT-----TIEGVQYLNNLIGLELKDNQIT-DLA-PLKNLTKITEL 90
Query: 66 DLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKM 125
+LS N ++ S+ LDL++ L++L LYLD N +
Sbjct: 91 ELSGNPLKNVSA---IAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT--N 143
Query: 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185
L T L+ L++ N +S D+ + N S L+ L +N + P L +L +L
Sbjct: 144 ISPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIE 199
Query: 186 IDLSEN---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
+ L N + L+N S + + L N I +
Sbjct: 200 VHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 21/224 (9%)
Query: 12 KLRHLDISSNNFSGKLP-ENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
L L++ N + P +NL K+ L++S N + N+ ++ ++ + LDL+
Sbjct: 64 NLIGLELKDNQITDLAPLKNL----TKITELELSGNPLK-NVS-AIAGLQSIKTLDLTST 117
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL 130
T P ++ +L L L N LT+L L + N S L
Sbjct: 118 QITDVTP---LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD--LTPLA 170
Query: 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSE 190
+ + L L +N +S DI + + L + + N + P L N +L + L+
Sbjct: 171 NLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
Query: 191 NSLISLSNLSFVKHIYL---QNNAIKGLIPIALLRSSTLLTLDL 231
++ + + + + + P + + T + +L
Sbjct: 227 QTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 19/133 (14%), Positives = 48/133 (36%), Gaps = 11/133 (8%)
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSF---VKHIYLQNNA 211
+ + ++ + + +L + + + ++ + + + + L++N
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74
Query: 212 IKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQL 271
I L P+ L + L+L N L + I ++ L L + L L
Sbjct: 75 ITDLAPLKNLTK--ITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD--VTPLAGL 128
Query: 272 RKLSIMDLSRNRL 284
L ++ L N++
Sbjct: 129 SNLQVLYLDLNQI 141
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 17/112 (15%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 177 LNNLKSLEFIDLSEN---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233
L + I ++ ++ ++L + + + + + L + L+ L+L+D
Sbjct: 15 DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNN--LIGLELKD 72
Query: 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
N++ + + + + L L GN L + + + L+ + +DL+ ++
Sbjct: 73 NQI-TDLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQIT 120
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 7e-15
Identities = 47/259 (18%), Positives = 105/259 (40%), Gaps = 21/259 (8%)
Query: 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTIL 65
P+ + + ++ + + + +N + + + ++ + ++ + + +T L
Sbjct: 16 PDDAFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKL 70
Query: 66 DLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKM 125
L+ N T P +++ +L WL L N + + +L L SL L++N S
Sbjct: 71 FLNGNKLTDIKP---LTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHNGIS--D 123
Query: 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185
+GL+ L L + NN ++ DI + + L L + +N + +I L L L+
Sbjct: 124 INGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQN 179
Query: 186 IDLSENSLISLSNLSFVKH---IYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH 242
+ LS+N + L L+ +K+ + L + T+ D L P
Sbjct: 180 LYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPE 237
Query: 243 QINERSNLHVLLLRGNYLQ 261
I++ + ++ + +
Sbjct: 238 IISDDGDYEKPNVKWHLPE 256
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 7e-10
Identities = 46/196 (23%), Positives = 87/196 (44%), Gaps = 16/196 (8%)
Query: 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPH 151
++ + Q+FP+ + L + +T L+S + + +N+ + +
Sbjct: 5 ITVSTPIKQIFPDD-AFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-SVQG 60
Query: 152 WIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSF---VKHIYLQ 208
I ++ L ++ N L +I L NLK+L ++ L EN + LS+L +K + L+
Sbjct: 61 -IQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 117
Query: 209 NNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQL 268
+N I + + L L +L L +NK+ ++ + L L L N + I L
Sbjct: 118 HNGISDINGLVHLPQ--LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-L 171
Query: 269 CQLRKLSIMDLSRNRL 284
L KL + LS+N +
Sbjct: 172 AGLTKLQNLYLSKNHI 187
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 9e-06
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 177 LNNLKSLEFIDLSENS---LISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233
+ +L + S ++ + L+ + I N+ IK + I L + + L L
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN--VTKLFLNG 74
Query: 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
NKL I + NL L L N ++ + + L L+KL + L N ++
Sbjct: 75 NKL-TDIKP-LTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS 122
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
+L + L L N S +I + L + +L L NN ++ S L +++L L
Sbjct: 106 KDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLE 161
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
N++S I P L L L N +S N++S
Sbjct: 162 DNQIS-DIVP-LAGLTKLQNLYLSKNHIS 188
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
+L + + +L +I + +N+ + + L + L L+
Sbjct: 18 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLN 73
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
NKL+ I P LT L L + N +
Sbjct: 74 GNKLT-DIKP-LTNLKNLGWLFLDENKIK 100
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 7e-14
Identities = 55/347 (15%), Positives = 106/347 (30%), Gaps = 17/347 (4%)
Query: 109 TDLGSLYLDNNHFSGKMTDGLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSV-LSVLLMSE 166
+L L N S ++ +S + LRVL +S+N + + + F+ L L +S
Sbjct: 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH 109
Query: 167 NYLQGNIPVQLNNLKSLEFIDLSENSLISL------SNLSFVKHIYLQNNAIKGLIPIAL 220
N LQ NI + SL +DLS N L NL+ + + L + L + +
Sbjct: 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166
Query: 221 LRSST-LLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDL 279
+ LDL + + + N VL L + + L + L
Sbjct: 167 AHLHLSCILLDLVSYHI-KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225
Query: 280 SRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQD 339
S +LN L + ++++ + P + +
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTL--QHIETTWKCSVKLFQFFWPRPVEYLNI 283
Query: 340 QQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG 399
+ + + L + + F + LS +
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343
Query: 400 AIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
+ L+ ++N + + + L L + N L
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 47/245 (19%), Positives = 93/245 (37%), Gaps = 14/245 (5%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIF----QKLIYLDMSKNNFEGNIPYSV 56
+ + +L+I + + ++ + L+ + F +
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 57 GEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYL 116
E+ I LS ++ T + S S +L+ + N F +F L L +L L
Sbjct: 326 SVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384
Query: 117 DNNHFS--GKMTDGLLSSTLLRVLNVSNNML-SGDIPHWIGNFSVLSVLLMSENYLQGNI 173
N K+ + + L L+VS N L S + VL +S N L G++
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Query: 174 PVQLNNLKSLEFIDLSENSLISLS----NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTL 229
L ++ +DL N ++S+ +L ++ + + +N +K + R ++L +
Sbjct: 445 FRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502
Query: 230 DLRDN 234
L DN
Sbjct: 503 WLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 66/412 (16%), Positives = 140/412 (33%), Gaps = 39/412 (9%)
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN--YMNLTDLGSLYLDNN 119
L LS+N+ + +L P +S L L LS+N + ++ DL L + +N
Sbjct: 54 TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHN 110
Query: 120 HFSGKMTDGLLSSTLLRVLNVSNNML-SGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN 178
++ ++S LR L++S N + GN + L+ L +S + + +
Sbjct: 111 RLQ-NISCCPMAS--LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167
Query: 179 NLK------SLEFIDLSENSLISLSNLSFVK-HIYLQNNAIKGLIPIALLRSSTLLTL-D 230
+L L + SL + H+ N++ + + + L L +
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227
Query: 231 LRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPN-------QLCQLRKLSIMDLSRNR 283
++ N + LL Q R + +++
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 284 LNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVG 343
+ I + + + +V + V ++ + E++ +
Sbjct: 288 ITERIDREEFT-------YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340
Query: 344 AKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLS--GAI 401
F+ S+ + L+ + N F+ + L+ ++ L L N L +
Sbjct: 341 TPFIHMV--CPPSPSSFTF---LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395
Query: 402 PESFSNLKMIESLDLSRNKLSGQIPPQLTEL-NFLSNFNVSYNNLSGPIPDK 452
N+ +E+LD+S N L+ + + N+S N L+G +
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 73/435 (16%), Positives = 149/435 (34%), Gaps = 51/435 (11%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+LR L +S N L ++ + Q L YLD+S N + NI M L LDLS N+
Sbjct: 77 ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFND 132
Query: 72 FTGKLPRPIVSSCL-SLDWLDLSNNNFYGQLFPNYMNL------TDLGSLYLDNNHFSGK 124
F LP L L +L LS F +L DL S ++
Sbjct: 133 FD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191
Query: 125 MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY---------LQGNIPV 175
L+ N ++ + +G+ + ++ L EN L +
Sbjct: 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251
Query: 176 QLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSS-----TLLTLD 230
L+ +E L V+++ + N I I S +L+
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311
Query: 231 LRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPS 290
+++ + + +++ +L + + ++ ++N
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF------ 365
Query: 291 CLGNVPFWREATDDDSSEFFYANNVDSPVAYYN--SSLELQ--LPVELHFRQDQQVGAKF 346
TD + + + N + + + + V
Sbjct: 366 -----------TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 347 VTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFS 406
+ + Y+ + + L+LS N +G + + ++ L+L NN + +IP+ +
Sbjct: 415 LNSHAYDRTCAWAES-ILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVT 470
Query: 407 NLKMIESLDLSRNKL 421
+L+ ++ L+++ N+L
Sbjct: 471 HLQALQELNVASNQL 485
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 76/443 (17%), Positives = 146/443 (32%), Gaps = 67/443 (15%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILDLSRN 70
L +LD+S N + L +LD+S N+F+ G + +LT L LS
Sbjct: 101 DLEYLDVSHNRLQ-NISCCP---MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKMTDG 128
F P+ LS LDL + + G + N T L ++ N+ FS ++
Sbjct: 157 KFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS 216
Query: 129 LLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDL 188
+ + L++ N+ N + + L + L+ +E
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTF------------LSELTRGPTLLNVTLQHIETTWK 264
Query: 189 SENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSS-----TLLTLDLRDNKLFGRIPHQ 243
L V+++ + N I I S +L+ +++
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324
Query: 244 INERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATD 303
+ + +++ +L + + ++ ++N TD
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF-----------------TD 367
Query: 304 DDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYM 363
+ + + N + N++ +
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKV----------------------ALMTKNMSSL 405
Query: 364 AGLDLSGNEF-SGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS 422
LD+S N S ++I LNLS+N+L+G++ ++ LDL N++
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM 463
Query: 423 GQIPPQLTELNFLSNFNVSYNNL 445
IP +T L L NV+ N L
Sbjct: 464 -SIPKDVTHLQALQELNVASNQL 485
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 5e-11
Identities = 70/441 (15%), Positives = 129/441 (29%), Gaps = 68/441 (15%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLI---YLDMSKNNFEGNIPYSVGE 58
L + LRHLD+S N+F LP F L +L +S F +
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFD-VLPV--CKEFGNLTKLTFLGLSAAKFR-QLDLLPVA 167
Query: 59 MKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118
L+ + L ++ K + L L + M++ LG L L N
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227
Query: 119 NHFSGKMTDGLLSS-----TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN- 172
+ + L++ +LNV+ + + F + +
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 173 ---------IPVQLNNLKSLEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPI 218
LKSL + + + + L + + +
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347
Query: 219 ALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMD 278
S+ L+ N + + L L+L+ N L+ + +S ++
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLE 406
Query: 279 LSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQ 338
LN L + + R +S ++ S+ LP ++
Sbjct: 407 TLDVSLN-----SLNSHAYDRTCAWAESILVLNLSS-----NMLTGSVFRCLPPKVKV-- 454
Query: 339 DQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLS 398
LDL N IP + LQ ++ LN+++N L
Sbjct: 455 ---------------------------LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486
Query: 399 GAIPESFSNLKMIESLDLSRN 419
F L ++ + L N
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
+ + L++SSN +G + L K+ LD+ N +IP V ++ L L+++ N
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNF 97
+P + SL ++ L +N +
Sbjct: 484 QLK-SVPDGVFDRLTSLQYIWLHDNPW 509
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 21/222 (9%)
Query: 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSN 94
F + I ++ K + + E+ + + + ++ + + ++ L L+
Sbjct: 23 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNG 77
Query: 95 NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
N NL +LG L+LD N L L+ L++ +N +S DI +
Sbjct: 78 NKL--TDIKPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGIS-DING-LV 131
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN---SLISLSNLSFVKHIYLQNNA 211
+ L L + N + +I V L+ L L+ + L +N ++ L+ L+ ++++YL N
Sbjct: 132 HLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189
Query: 212 IKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVL 253
I L +A L++ L L+L + + IN +SNL V
Sbjct: 190 ISDLRALAGLKN--LDVLELFSQEC---LNKPINHQSNLVVP 226
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 5e-12
Identities = 44/234 (18%), Positives = 95/234 (40%), Gaps = 19/234 (8%)
Query: 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTIL 65
+ + + ++ + + + +N + + + ++ + ++ + + +T L
Sbjct: 19 SDDAFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKL 73
Query: 66 DLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKM 125
L+ N T P +++ +L WL L N + + +L L SL L++N S
Sbjct: 74 FLNGNKLTDIKP---LANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGIS--D 126
Query: 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185
+GL+ L L + NN ++ DI + + L L + +N + +I L L L+
Sbjct: 127 INGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQN 182
Query: 186 IDLSENSLISLSNLSFVKH---IYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
+ LS+N + L L+ +K+ + L + T+ D L
Sbjct: 183 LYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Query: 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194
N+ ++ + + + ++ + + ++ ++ + L ++ + L+ N L
Sbjct: 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT 81
Query: 195 S---LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLH 251
L+NL + ++L N +K L + L+ L +L L N + I + L
Sbjct: 82 DIKPLANLKNLGWLFLDENKVKDLSSLKDLKK--LKSLSLEHNGI-SDING-LVHLPQLE 137
Query: 252 VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
L L N + I L +L KL + L N++
Sbjct: 138 SLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQI 168
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 177 LNNLKSLEFIDLSENS---LISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233
+ +L + S ++ + L+ + I N+ IK + I L + + L L
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN--VTKLFLNG 77
Query: 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
NKL I + NL L L N ++ + + L L+KL + L N ++
Sbjct: 78 NKL-TDIK-PLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS 125
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
+L + L L N S +I + L + +L L NN ++ S L +++L L
Sbjct: 109 KDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLE 164
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
N++S I P L L L N +S N++S
Sbjct: 165 DNQIS-DIVP-LAGLTKLQNLYLSKNHIS 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 34/206 (16%), Positives = 73/206 (35%), Gaps = 38/206 (18%)
Query: 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSN 94
F+ + + +++ + +M LT + L+ N T DL+
Sbjct: 22 FKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVT-----------------DLTG 61
Query: 95 NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
++ L ++N H + + + + L L + ++ D +
Sbjct: 62 IE----------YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLS 109
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS----LSNLSFVKHIYLQNN 210
+ L++L +S + +I ++N L + IDLS N I+ L L +K + +Q +
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169
Query: 211 AIKGLIPIALLRSSTLLTLDLRDNKL 236
+ I L L +
Sbjct: 170 GVHDYRGIEDF--PKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 7e-09
Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 9/163 (5%)
Query: 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTI 64
+ A+ + L ++ +++ N + L + + L ++ + P + + L
Sbjct: 38 ITEAQMNSLTYITLANINVT-DL-TGIE-YAHNIKDLTINNIHATNYNP--ISGLSNLER 92
Query: 65 LDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK 124
L + + T + S SL LD+S++ + L + S+ L N
Sbjct: 93 LRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151
Query: 125 MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167
+ L + L+ LN+ + + D I +F L+ L
Sbjct: 152 IM-PLKTLPELKSLNIQFDGVH-DYRG-IEDFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-08
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
S L+ + L + G + + + + L ++ L++S++ +I + L + S+DLS
Sbjct: 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLS 446
N I P L L L + N+ ++ +
Sbjct: 145 YNGAITDIMP-LKTLPELKSLNIQFDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 7e-08
Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 5/112 (4%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L L I + + NL + L LD+S + + +I + + ++ +DLS N
Sbjct: 89 NLERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG 123
+ + + L L++ + + + + L LY + G
Sbjct: 148 AITDI--MPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
L ++ + P I L N+ L + ++ + S L + LD+S + I
Sbjct: 71 LTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128
Query: 426 PPQLTELNFLSNFNVSYNNL 445
++ L +++ ++SYN
Sbjct: 129 LTKINTLPKVNSIDLSYNGA 148
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 170 QGNIPVQLNNLKSLEFIDLSENSL--ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLL 227
Q N+ + + K+ L ++S I+ + ++ + +I L N + L I + +
Sbjct: 12 QDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHN--IK 69
Query: 228 TLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGP 287
L + + P I+ SNL L + G + L L L+++D+S + +
Sbjct: 70 DLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127
Query: 288 IPSCLGN 294
I + +
Sbjct: 128 ILTKINT 134
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 16/112 (14%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Query: 177 LNNLKSLEFIDLSEN---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233
+ +++ + ++ + +S LS ++ + + + L ++L LD+
Sbjct: 62 IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121
Query: 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
+ I +IN ++ + L N I L L +L +++ + ++
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
+ +N + + L+ + I NI+ L ++N + S L +E L +
Sbjct: 41 AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIM 96
Query: 418 RNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDK 452
++ P L+ L L+ ++S++ I K
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 3e-12
Identities = 87/535 (16%), Positives = 155/535 (28%), Gaps = 182/535 (34%)
Query: 40 YLDMSKNNFEGNIPYSVGEMKELT-----ILDLSRNNF--------TGKLPRPIVSSCLS 86
D N+ + Y+V ++ +L+L +GK + ++
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-------TWVA 167
Query: 87 LD----------------WLDLSN-----------NNFYGQLFPNYMNLTDLGSLYLDNN 119
LD WL+L N Q+ PN+ + +D S
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 120 HFSGKMTDGLLSS-----TLLRVL-NVSNNMLSGDIPHWIGN-FSVLS-VLLMSENYLQG 171
H LL S LL VL NV N N F++ +LL +
Sbjct: 228 HSIQAELRRLLKSKPYENCLL-VLLNVQNA--------KAWNAFNLSCKILLTTRF---- 274
Query: 172 NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLT--L 229
K + D LS + HI L ++ L P + +LL L
Sbjct: 275 ---------KQV--TD-------FLSAAT-TTHISL-DHHSMTLTPDEVK---SLLLKYL 311
Query: 230 DLRDNKLFGRIPHQINERSNLHVLLL---------RGNYLQGRIPNQLCQLRKLSIMDLS 280
D R L P ++ + + ++ + + ++L + + S+ L
Sbjct: 312 DCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 281 ----RNRL--------NGPIPS---CLGNVPFWREATDDDS----SEFFYANNVDSPVAY 321
R + IP+ L W + D ++ + V+
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSL----IWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 322 YNSSL-ELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWK 380
S+ + L +++ + + V + Y + + DL
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIV--DHYNIPKTFDSD-----DLIPPYLDQYFYSH 476
Query: 381 IG-QLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS--RNKL---------SGQIPPQ 428
IG L+NI PE + +M+ LD K+ SG I
Sbjct: 477 IGHHLKNIEH------------PERMTLFRMV-FLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 429 LTELNF------------------LSNF--NVSYNNLSGPIPDKEQFATFDDCSY 463
L +L F + +F + N + D + A +
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 53/326 (16%), Positives = 98/326 (30%), Gaps = 53/326 (16%)
Query: 12 KLRHLDISSNNFSGK----LPENLGIIFQKLIYLDMSKNNF--EG--NIPYSVGEMKELT 63
L L++ SN + + L K+ L + G + ++ + L
Sbjct: 57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116
Query: 64 ILDLSRNNFTGK----LPRPIVSSCLSLDWLDLSNNNFYGQ----LFPNYMNLTDLGSLY 115
L LS N L ++ L+ L L + L D L
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176
Query: 116 LDNNHFSGKM----TDGLLSSTL-LRVLNVSNNMLSGD----IPHWIGNFSVLSVLLMSE 166
+ NN + GL S L L + + ++ D + + + + L L +
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236
Query: 167 NYLQGN-----IPVQLNNLKSLEFIDLSENSL---------ISLSNLSFVKHIYLQNNAI 212
N L P L+ L + + E + L +K + L N +
Sbjct: 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296
Query: 213 -----KGLIPIALLRSSTLLTLDLRDNKL----FGRIPHQINERSNLHVLLLRGNYLQGR 263
+ L L L +L ++ + + L L + N L+
Sbjct: 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356
Query: 264 IPNQLCQL-----RKLSIMDLSRNRL 284
+LCQ L ++ L+ +
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDV 382
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 56/325 (17%), Positives = 104/325 (32%), Gaps = 57/325 (17%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNF--EG--NIPYSVGEMKELTILDLS 68
++ LDI S L + Q+ + + +I ++ L L+L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 69 RNNFTGK----LPRPIVSSCLSLDWLDLSNNNF----YGQLFPNYMNLTDLGSLYLDNNH 120
N + + + + + L L N G L L L L+L +N
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 121 FSGK----MTDGLLS-STLLRVLNVSNNMLS----GDIPHWIGNFSVLSVLLMSENYLQG 171
+ +GLL L L + LS + + L +S N +
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-N 183
Query: 172 NIPVQL------NNLKSLEFIDLSENSL---------ISLSNLSFVKHIYLQNNAI---- 212
V++ ++ LE + L + +++ + ++ + L +N +
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243
Query: 213 -KGLIPIALLRSSTLLTLDLRDNKL----FGRIPHQINERSNLHVLLLRGNYLQGR---- 263
L P L SS L TL + + + G + + + +L L L GN L
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303
Query: 264 ----IPNQLCQLRKLSIMDLSRNRL 284
+ CQL L +
Sbjct: 304 LCETLLEPGCQLESL---WVKSCSF 325
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 44/268 (16%), Positives = 80/268 (29%), Gaps = 44/268 (16%)
Query: 13 LRHLDISSNNFSGK----LPENLGIIFQKLIYLDMSKNNF--EG--NIPYSVGEMKELTI 64
+ L +S+N+ + L + L +L L + + ++ V L
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231
Query: 65 LDLSRNNFTGK----LPRPIVSSCLSLDWLDLSNNNF----YGQLFPNYMNLTDLGSLYL 116
L L N L ++ L L + G L L L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291
Query: 117 DNNHFSGK----MTDGLLS-STLLRVLNVSNNMLSGD----IPHWIGNFSVLSVLLMSEN 167
N + + + LL L L V + + + L L +S N
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351
Query: 168 YLQGNIPVQL-----NNLKSLEFIDLSENSL---------ISLSNLSFVKHIYLQNNAI- 212
L+ +L L + L++ + +L ++ + L NN +
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
Query: 213 -KGLIPIA-LLRS--STLLTLDLRDNKL 236
G++ + +R L L L D
Sbjct: 412 DAGILQLVESVRQPGCLLEQLVLYDIYW 439
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 36/243 (14%), Positives = 72/243 (29%), Gaps = 49/243 (20%)
Query: 85 LSLDWLDLSNNNFYGQLFPN-YMNLTDLGSLYLDNNHFSGK----MTDGLLSSTLLRVLN 139
L + LD+ + L + LD+ + ++ L + L LN
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 140 VSNNMLSGDIPHWIGNFSVLSVLLMSEN------YLQGN---------IPVQLNNLKSLE 184
+ +N L + L + + LQ + L L +L+
Sbjct: 63 LRSNELGDV------GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116
Query: 185 FIDLSENSL----------ISLSNLSFVKHIYLQNNAI--KGLIPIA--LLRSSTLLTLD 230
+ LS+N L L ++ + L+ ++ P+A L L
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176
Query: 231 LRDNKLFGRIPHQINE-----RSNLHVLLLRGNYLQGR----IPNQLCQLRKLSIMDLSR 281
+ +N + + + L L L + + + L + L
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236
Query: 282 NRL 284
N+L
Sbjct: 237 NKL 239
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-11
Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 33/230 (14%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILDLSRNN 71
++LD+S N L F +L LD+S+ + I + L+ L L+ N
Sbjct: 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDNNHFSGKMTDGL 129
L S SL L N N+ +L L L + +N
Sbjct: 88 IQ-SLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 130 LSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDL 188
S+ T L L++S+N + I + VL + + L DL
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYC--TDLRVLHQMPLLNLSL-----------------DL 184
Query: 189 SENSLISLSNLSFVK----HIYLQNNAIKGLIPIALLRSSTLLTLDLRDN 234
S N + + +F + + L N +K + R ++L + L N
Sbjct: 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 28/223 (12%)
Query: 51 NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN--YMNL 108
N+P+S LDLS N L S L LDLS Q + Y +L
Sbjct: 25 NLPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSL 75
Query: 109 TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWI-GNFSVLSVLLMSEN 167
+ L +L L N + L+ L L+ + ++ G+ L L ++ N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN 134
Query: 168 YLQGNIPVQ--LNNLKSLEFIDLSENSLISLSNLSFVK---------HIYLQNNAIKGLI 216
+Q + + +NL +LE +DLS N + S+ + L N + I
Sbjct: 135 LIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-I 192
Query: 217 PIALLRSSTLLTLDLRDNKLFGRIPHQINER-SNLHVLLLRGN 258
+ L L L N+L +P I +R ++L + L N
Sbjct: 193 QPGAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 39/212 (18%), Positives = 63/212 (29%), Gaps = 15/212 (7%)
Query: 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQ---KLIYLDMSKNNFEGNIPYSV-GEMKELT 63
+ + L ++IS N+ + + +F KL + + K N I + L
Sbjct: 51 SGFGDLEKIEISQNDVLEVIEAD---VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107
Query: 64 ILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQL----FPNYMNLTDLGSLYLDNN 119
L +S LP L LD+ +N + F L+L+ N
Sbjct: 108 YLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE--SVILWLNKN 164
Query: 120 HFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNN 179
+ L + NN L S +L +S + L N
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224
Query: 180 LKSLEFIDLSEN-SLISLSNLSFVKHIYLQNN 210
LK L L +L L + L
Sbjct: 225 LKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 38/233 (16%), Positives = 74/233 (31%), Gaps = 18/233 (7%)
Query: 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT 73
R + + ++P + + + I L + +L +++S+N+
Sbjct: 12 RVFLCQESKVT-EIPSD---LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67
Query: 74 GKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY-MNLTDLGSLYLDNNHFSGKMTDGLLSS 132
+ + S+ L + + N + P NL +L L + N + S
Sbjct: 68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127
Query: 133 TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN----IPVQ-LNNLKSLEFID 187
+L++ +N+ I +F LS + +L N I N + E
Sbjct: 128 LQKVLLDIQDNINIHTIER--NSFVGLSFESV-ILWLNKNGIQEIHNSAFNGTQLDELNL 184
Query: 188 LSENSLISLSNLSF-----VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK 235
N+L L N F + + I L L L + K
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 9/159 (5%)
Query: 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFIDLSENSL 193
L L F L + +S+N + I +NL L I + + +
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 194 IS------LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI--N 245
+ NL ++++ + N IK L + + S + LD++DN I
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 246 ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
+L L N +Q + + + N L
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL 190
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 33/148 (22%), Positives = 51/148 (34%), Gaps = 16/148 (10%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQ----KLIYLDMSKNNFEGNIPYSVG 57
LP + + LDI N + N F + + L ++KN + I S
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNS---FVGLSFESVILWLNKNGIQ-EIHNSAF 174
Query: 58 EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLY 115
+L L+LS NN +LP + LD+S P+Y NL L +
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSYGLENLKKLRARS 232
Query: 116 LDNNHFSGKMTDGLLSSTLLRVLNVSNN 143
N K L L +++
Sbjct: 233 TYNL----KKLPTLEKLVALMEASLTYP 256
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 36/225 (16%), Positives = 73/225 (32%), Gaps = 26/225 (11%)
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY-MNLTDLGSLYLDNN 119
L L + +P S+ ++ + +S + QL + NL+ + + + N
Sbjct: 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 120 HFSGKMTDGLLSS-TLLRVLNVSNNMLSGDIPH--WIGNFSVLSVLLMSENYLQGNIPVQ 176
+ L LL+ L + N L P + + + +L +++N
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDN--------- 140
Query: 177 LNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
+ S+ N+ L N + + L NN + + L + L NK
Sbjct: 141 -PYMTSI-----PVNAFQGLCNET--LTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKY 191
Query: 237 FGRIPHQI--NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDL 279
I S +L + + L L++L +
Sbjct: 192 LTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 27/210 (12%), Positives = 73/210 (34%), Gaps = 18/210 (8%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILDLSRNN 71
+ L + + +P + + + +S + + + ++T +++
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYL----DNNH---FSGK 124
+ + L +L + N ++FP+ + ++ DN +
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGL--KMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
Query: 125 MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKS- 182
GL L + NN + + + N + L + +++N I + S
Sbjct: 150 AFQGL--CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206
Query: 183 LEFIDLSENSLISLSNLSF--VKHIYLQNN 210
+D+S+ S+ +L + +K + +N
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 8e-07
Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 11/159 (6%)
Query: 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQL-NNLKSLEFIDLSENSL 193
+ L + L H N +S + +S + + NL + I++
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92
Query: 194 IS------LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLT-LDLRDNKLFGRIPHQI-- 244
++ L L +K + + N +K + + S+ + L++ DN IP
Sbjct: 93 LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152
Query: 245 NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNR 283
+ L L N + KL + L++N+
Sbjct: 153 GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 11/180 (6%)
Query: 109 TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168
D L+L N L+ T L LN+ L+ + G VL L +S N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQ 88
Query: 169 LQGNIPVQLNNLKSLEFIDLSENSLISLS-----NLSFVKHIYLQNNAIKGLIPIALLRS 223
LQ ++P+ L +L +D+S N L SL L ++ +YL+ N +K L P L +
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 224 STLLTLDLRDNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
L L L +N L +P + NL LLL+ N L IP L L N
Sbjct: 148 PKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 24/208 (11%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
++ N + LP + + + L +S+N ++ LT L+L R
Sbjct: 12 HLEVNCDKRNLT-ALPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN-YMNLTDLGSLYLDNNHFSGKMTDGLLS 131
T + + L LDLS+N Q P L L L + N + + G L
Sbjct: 68 TK---LQVDGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALR 121
Query: 132 S-TLLRVLNVSNNMLSGDIPHWIGNFSVLS---VLLMSENYLQGNIPVQL-NNLKSLEFI 186
L+ L + N L +P G + L ++ N L +P L N L++L+ +
Sbjct: 122 GLGELQELYLKGNELK-TLPP--GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177
Query: 187 DLSENSLISLSNLSF----VKHIYLQNN 210
L ENSL ++ F + +L N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 9/157 (5%)
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN 191
+N L+ +P + ++L +SEN L L L ++L
Sbjct: 9 VASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 192 SLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER- 247
L L L + + L +N ++ L P+ L LD+ N+L +P
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRL-TSLPLGALRGL 123
Query: 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
L L L+GN L+ P L KL + L+ N L
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Query: 178 NNLKSLEFIDLSENSLISL-SNL-SFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK 235
+ + S ++ + +L +L +L ++L N + L+ + L L+L +
Sbjct: 7 SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 236 LFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
L L L L N LQ +P L L+++D+S NRL
Sbjct: 67 L--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 17/181 (9%)
Query: 59 MKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118
+ +L + + T + + + N+N Q T+L L+L +
Sbjct: 18 LANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSH 72
Query: 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN 178
N S L T L L+V+ N L ++ + LS L + N L+ L
Sbjct: 73 NQIS--DLSPLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNELRDTDS--LI 125
Query: 179 NLKSLEFIDLSEN---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK 235
+LK+LE + + N S++ L LS ++ + L N I + L+ + +DL K
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKK--VNWIDLTGQK 183
Query: 236 L 236
Sbjct: 184 C 184
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 40/205 (19%), Positives = 75/205 (36%), Gaps = 18/205 (8%)
Query: 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTIL 65
P+ ++ + + + + + + +N + ++ + L L
Sbjct: 14 PDPGLANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKEL 68
Query: 66 DLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKM 125
LS N + P + L+ L ++ N L+ L+LDNN
Sbjct: 69 HLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELRD-- 120
Query: 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185
TD L+ L +L++ NN L I +G S L VL + N + L LK + +
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNW 176
Query: 186 IDLSENSLISLSNLSFVKHIYLQNN 210
IDL+ + + +Y+ N
Sbjct: 177 IDLTGQK-CVNEPVKYQPELYITNT 200
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 41/195 (21%), Positives = 84/195 (43%), Gaps = 15/195 (7%)
Query: 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPH 151
+ Q+FP+ L + L + + ++ N N+ + +
Sbjct: 3 IQRPTPINQVFPDP-GLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLAG 58
Query: 152 WIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFV--KHIYLQN 209
+ F+ L L +S N + ++ L +L LE + ++ N L +L+ + ++L N
Sbjct: 59 -MQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115
Query: 210 NAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLC 269
N ++ + L++ L L +R+NKL + + S L VL L GN + L
Sbjct: 116 NELRDTDSLIHLKN--LEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGG--LT 169
Query: 270 QLRKLSIMDLSRNRL 284
+L+K++ +DL+ +
Sbjct: 170 RLKKVNWIDLTGQKC 184
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 9e-10
Identities = 41/209 (19%), Positives = 80/209 (38%), Gaps = 30/209 (14%)
Query: 53 PYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLG 112
++L +LS T + + SC L L+ N + L L
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVL--QSELESCKELQELEPENKWCLLTIILLMRALDPLL 399
Query: 113 SLYLDNNHFSG---------------------KMTDGLLSSTLLRVLNVSNNMLSGDIPH 151
+FS + + + +RVL++++ L+ + H
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH 458
Query: 152 WIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKH---IYLQ 208
+ +++ L +S N L+ +P L L+ LE + S+N+L ++ ++ + + L
Sbjct: 459 -LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLC 516
Query: 209 NNAIKGLIPIALLRSSTLL-TLDLRDNKL 236
NN ++ I L S L L+L+ N L
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 5e-07
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSG-Q 424
LDLS N +P + L+ + L S+N L + +NL ++ L L N+L
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSA 524
Query: 425 IPPQLTELNFLSNFNVSYNNLS 446
L L N+ N+L
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 19/187 (10%)
Query: 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTI 64
L D L + + FS + + YLD ++ F E ++ +
Sbjct: 390 LLMRALDPLLYEKETLQYFS----TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV 445
Query: 65 LDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK 124
L L+ + T L + L + LDLS+N L P L L L +N +
Sbjct: 446 LHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNAL--E 499
Query: 125 MTDGLLSSTLLRVLNVSNNMLSG--DIPHWIGNFSVLSVLLMSENYLQ------GNIPVQ 176
DG+ + L+ L + NN L I + + L +L + N L +
Sbjct: 500 NVDGVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
Query: 177 LNNLKSL 183
L ++ S+
Sbjct: 559 LPSVSSI 565
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 24/169 (14%)
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NLTDLGSLYLDN 118
+LDLS NN + + +L L LS+N+ + + +L L L +
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSS 97
Query: 119 NHFSGKMTDGLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLS---VLLMSENYLQGNIP 174
NH + + L S L VL + NN + + F ++ L +S+N + P
Sbjct: 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDR--NAFEDMAQLQKLYLSQNQIS-RFP 152
Query: 175 VQ----LNNLKSLEFIDLSENSLISLSNLSF-------VKHIYLQNNAI 212
V+ N L L +DLS N L L +YL NN +
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 7e-08
Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 18/174 (10%)
Query: 141 SNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQ--LNNLKSLEFIDLSENSLISL-- 196
S L ++P + S ++L +S N L + + L +L + LS N L +
Sbjct: 26 SKQQLP-NVPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISS 81
Query: 197 ---SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NERSNLHV 252
+ ++++ L +N + L L L L +N + + + + L
Sbjct: 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQK 140
Query: 253 LLLRGNYLQGRIPNQ----LCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREAT 302
L L N + R P + +L KL ++DLS N+L + L +P W +
Sbjct: 141 LYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 15/152 (9%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQK---LIYLDMSKNNFEGNIPYSV- 56
+ + L L +S N+ + + F L YLD+S N+ + +
Sbjct: 54 LRAEWTPTRLTNLHSLLLSHNHLN-FISSE---AFVPVPNLRYLDLSSNHLH-TLDEFLF 108
Query: 57 GEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNN---FYGQLFPNYMNLTDLGS 113
+++ L +L L N+ + R L L LS N F +L + L L
Sbjct: 109 SDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167
Query: 114 LYLDNNHFSGKMTDGL--LSSTLLRVLNVSNN 143
L L +N L L + + L + NN
Sbjct: 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 27/199 (13%)
Query: 109 TDLGSLYLDNNHFSGKMTDGLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLS---VLLM 164
+ L L +N+ S + + T L L +S+N L+ I F + L +
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISS--EAFVPVPNLRYLDL 95
Query: 165 SENYLQGNIPVQ-LNNLKSLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPI 218
S N+L + ++L++LE + L N ++ + +++ ++ +YL N I
Sbjct: 96 SSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154
Query: 219 A---LLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQL---CQLR 272
+ L+ LDL NKL ++P L + G YL N L C+L
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKL-KKLPLTD--LQKLPAWVKNGLYLHN---NPLECDCKLY 208
Query: 273 KLSIMDLSRNRLNGPIPSC 291
+L +L+ +
Sbjct: 209 QL-FSHWQYRQLSSVMDFQ 226
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 366 LDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424
LDLS N + + LQ + L L NN + +F ++ ++ L LS+N++S +
Sbjct: 93 LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-R 150
Query: 425 IPPQ----LTELNFLSNFNVSYNNLS 446
P + +L L ++S N L
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLK 176
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416
+NL+ L LS N + I + + N+R L+LS+N L FS+L+ +E L L
Sbjct: 64 TNLHS---LLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119
Query: 417 SRNKLSGQIPPQ----LTELNFLSNFNVSYNNLS 446
N + + + +L L +S N +S
Sbjct: 120 YNNHIV-VVDRNAFEDMAQLQKL---YLSQNQIS 149
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 4e-08
Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 12/133 (9%)
Query: 172 NIPVQLNNLKSLEFIDLSENSLI------SLSNLSFVKHIYLQNNAIKGLIPIALLRSST 225
+ L ++L + + + L L ++++ + + ++ + P A +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 226 LLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
L L+L N L + + + +L L+L GN L + C LR L +
Sbjct: 82 LSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL-----HCSCALRWLQRWEEEGLGGV 135
Query: 286 GPIPSCLGNVPFW 298
Sbjct: 136 PEQKLQCHGQGPL 148
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 8e-08
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 366 LDLSGNEFSGEIPWK-IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424
L + + + + + L +R L + + L P++F + L+LS N L
Sbjct: 36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94
Query: 425 IPPQLTELNFLSNFNVSYNNL 445
+ + + L +S N L
Sbjct: 95 LSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 2e-05
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 3/102 (2%)
Query: 376 EIPWKIGQLQNIRALNLSNNLLSGAIP-ESFSNLKMIESLDLSRNKLSGQIPPQ-LTELN 433
+ + +N+ L + N + L + +L + ++ L + P
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80
Query: 434 FLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIK 475
LS N+S+N L Q + + GN C ++
Sbjct: 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 2e-05
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQ---KLIYLDMSKNNFEGNIPYSVG 57
L LP A+ L L I + L + +L L + K+ P +
Sbjct: 23 SLHHLPGAE--NLTELYIENQQHLQHLELRD---LRGLGELRNLTIVKSGLRFVAPDAFH 77
Query: 58 EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNF 97
L+ L+LS N L V LSL L LS N
Sbjct: 78 FTPRLSRLNLSFNALE-SLSWKTVQG-LSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 5e-04
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 5/97 (5%)
Query: 51 NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY--MNL 108
+ + + + LT L + L + L L + + +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL--RFVAPDAFHFT 79
Query: 109 TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNML 145
L L L N ++ + L+ L +S N L
Sbjct: 80 PRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 53/322 (16%), Positives = 96/322 (29%), Gaps = 80/322 (24%)
Query: 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQK---LIYLDMSKNNFEGNIPYSVGE------ 58
+ D ++ + +S N + L L + S + F G + + E
Sbjct: 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-DIFTGRVKDEIPEALRLLL 87
Query: 59 -----MKELTILDLSRNNFTGKLPRPIV---SSCLSLDWLDLSNNNFYGQLFPNYMNLTD 110
+L + LS N F P++ S L+ L L NN L
Sbjct: 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-----------LGP 136
Query: 111 LGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170
+ + ++ LR + N + N S+
Sbjct: 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNR--------LENGSMKEWAKT------ 182
Query: 171 GNIPVQLNNLKSLEFIDLSENSL----------ISLSNLSFVKHIYLQNNAI--KGLIPI 218
+ + L + + +N + L+ +K + LQ+N G +
Sbjct: 183 ------FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236
Query: 219 A--LLRSSTLLTLDLRDNKL----FGRIPHQINERSN--LHVLLLRGNYLQGR------- 263
A L L L L D L + ++ N L L L+ N ++
Sbjct: 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296
Query: 264 -IPNQLCQLRKLSIMDLSRNRL 284
I ++ L L +L+ NR
Sbjct: 297 VIDEKMPDLLFL---ELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 40/249 (16%), Positives = 81/249 (32%), Gaps = 51/249 (20%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQK---LIYLDMSKNNF--EG--NIPYSVGEMKELTIL 65
+ + + + + +++ + + + + +S N E + ++ K+L I
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 66 DLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK- 124
+ S + FTG++ I + L Q L ++ L +N F
Sbjct: 66 EFS-DIFTGRVKDEIPEALRLL-----------LQALLKCPKLH---TVRLSDNAFGPTA 110
Query: 125 ---MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLK 181
+ D L T L L + NN L + ++ + + + N
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQ-----------AGAKIARALQELAVNKKAKNAP 159
Query: 182 SLEFIDLSENSL---------ISLSNLSFVKHIYLQNNAI-----KGLIPIALLRSSTLL 227
L I N L + + + + + N I + L+ L L
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219
Query: 228 TLDLRDNKL 236
LDL+DN
Sbjct: 220 VLDLQDNTF 228
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 45/267 (16%), Positives = 94/267 (35%), Gaps = 64/267 (23%)
Query: 12 KLRHLDISSNNFSGK----LPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEM-----KEL 62
+ L++S N+ K L + L I + L++S N + + +
Sbjct: 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111
Query: 63 TILDLSRNNFTGK----LPRPIVSSCLSLDWLDLSNNNFYGQ--------LFPNYMNLTD 110
T+LDL N+F+ K + + S+ L+L N+ + L N+
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN- 170
Query: 111 LGSLYLDNNHFSGK----MTDGLLS-STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165
SL L N+ + K + L S + L++S N+L +++ L+ + S
Sbjct: 171 --SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK------SYAELAYIFSS 222
Query: 166 ENYLQGNIPVQLNNLKSLEFIDLSENSL---------ISLSNLSFVKHIYLQNNAIKGLI 216
+ ++L N L + +L ++ +YL + +K +
Sbjct: 223 IP-------------NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269
Query: 217 PI-------ALLRSSTLLTLDLRDNKL 236
A ++ +D ++
Sbjct: 270 KEQCKALGAAFPNIQKIILVDKNGKEI 296
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 51/312 (16%), Positives = 103/312 (33%), Gaps = 77/312 (24%)
Query: 12 KLRHLDISSNNFSGK----LPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEM-----KEL 62
+ LD+S NN L + + L++S N+ + ++ +
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82
Query: 63 TILDLSRNNFTGK----LPRPIVSSCLSLDWLDLSNNNFYGQ--------LFPNYMNLTD 110
T L+LS N + K L + + + ++ LDL N+F + ++T
Sbjct: 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT- 141
Query: 111 LGSLYLDNNHFSGK----MTDGLLS-STLLRVLNVSNNMLSGDIPHWIGNFSV--LSVLL 163
SL L N K + L + + LN+ N + + + L+ L
Sbjct: 142 --SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN--------LASKNCAELAKFL 191
Query: 164 MSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRS 223
S S+ +DLS N L + L I
Sbjct: 192 ASIP-------------ASVTSLDLSANL--------------LGLKSYAELAYIFSSIP 224
Query: 224 STLLTLDLRDNKL----FGRIPHQINERSNLHVLLLRGNYLQGRIPNQ-------LCQLR 272
+ +++L+L N L + + +L + L + ++ Q ++
Sbjct: 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284
Query: 273 KLSIMDLSRNRL 284
K+ ++D + +
Sbjct: 285 KIILVDKNGKEI 296
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 38/216 (17%), Positives = 68/216 (31%), Gaps = 34/216 (15%)
Query: 12 KLRHLDISSNNFSGK----LPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEM-----KEL 62
+ L++ N+ K L + L I + L++ NN + + +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198
Query: 63 TILDLSRNNFTGK----LPRPIVSSCLSLDWLDLSNNNFYGQ----LFPNYMNLTDLGSL 114
T LDLS N K L S + L+L N +G L +L L ++
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258
Query: 115 YLDNNHFSGKMTDG-------LLSSTLLRVLNVSNNMLSGD--------IPHWIGNFSVL 159
YLD + + + + +++ + + I G V
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318
Query: 160 SVLLMSENYLQGNI--PVQLNNLKSLEFIDLSENSL 193
S+L + Q + LN L + L
Sbjct: 319 SLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 53/263 (20%), Positives = 85/263 (32%), Gaps = 56/263 (21%)
Query: 80 IVSSCLSLDWLDLSNNNFYGQ--------LFPNYMNLTDLGSLYLDNNHFSGKMTDGLLS 131
S + LDLS NN Y ++T SL L N K +D L+
Sbjct: 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVT---SLNLSGNSLGFKNSDELVQ 73
Query: 132 -----STLLRVLNVSNNMLSGDIPHWIGNF-----SVLSVLLMSENYLQGN-----IPVQ 176
+ LN+S N LS + ++VL + N
Sbjct: 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133
Query: 177 LNNLKSLEFIDLSENSL-----------ISLSNLSFVKHIYLQNNAI--KGLIPIA-LLR 222
N S+ ++L N L ++ + V + L+ N + K +A L
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN-VNSLNLRGNNLASKNCAELAKFLA 192
Query: 223 S--STLLTLDLRDNKL-------FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRK 273
S +++ +LDL N L I I +++ L L N L G L L+
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIP--NHVVSLNLCLNCLHGPSLENLKLLKD 250
Query: 274 ----LSIMDLSRNRLNGPIPSCL 292
L + L + +
Sbjct: 251 SLKHLQTVYLDYDIVKNMSKEQC 273
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 53/219 (24%), Positives = 78/219 (35%), Gaps = 48/219 (21%)
Query: 51 NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NL 108
NIP LDL N + LP L L L++N Q P + L
Sbjct: 34 NIPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKEL 84
Query: 109 TDLGSLYLDNNHFS---GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165
+L +L++ +N + D L L L + N L
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQL---VNLAELRLDRNQLK------------------- 122
Query: 166 ENYLQGNIPVQLNNLKSLEFIDLSENSLISLS-----NLSFVKHIYLQNNAIKGLIPIAL 220
L + L L L L N L SL L+ +K + L NN +K + A
Sbjct: 123 --SLPPRVFDSLTKLTYL---SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 221 LRSSTLLTLDLRDNKLFGRIPHQINER-SNLHVLLLRGN 258
+ + L TL L +N+L R+P + L +L L+ N
Sbjct: 178 DKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQLQEN 215
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 46/170 (27%)
Query: 51 NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN--YMNL 108
N+P ++ T + L +N +P S L +DLSNN + L
Sbjct: 29 NLPETI------TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI--SELAPDAFQGL 79
Query: 109 TDLGSLYLDNN---HFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165
L SL L N + +GL L++L ++ N ++ + F
Sbjct: 80 RSLNSLVLYGNKITELPKSLFEGL---FSLQLLLLNANKINC-LRV--DAFQ-------- 125
Query: 166 ENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSF-----VKHIYLQNN 210
+L +L + L +N L +++ +F ++ ++L N
Sbjct: 126 -------------DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 172 NIPVQLNNLKSLEFIDLSENSLISLS-----NLSFVKHIYLQNNAIKGLIPIALLRSSTL 226
N+P + + L +N++ + ++ I L NN I L P A +L
Sbjct: 29 NLPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 227 LTLDLRDNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQL-CQLRKLSIMDLSRNRL 284
+L L NK+ +P + E +L +LLL N + + L L+++ L N+L
Sbjct: 83 NSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLI---YLDMSKNNFEGNIPYSV-GEMKELT 63
+ Y KLR +D+S+N S +L + FQ L L + N +P S+ + L
Sbjct: 53 SPYKKLRRIDLSNNQIS-ELAPD---AFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ 107
Query: 64 ILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
+L L+ N L +L+ L L +N + L + +++L N F
Sbjct: 108 LLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 104 NYMNLTDLGSLYLDNNHFSGKMTDGLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVL 162
+ L LDN + +GL + L L++ N L + + + L L
Sbjct: 19 RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76
Query: 163 LMSENYLQGNIPVQLNNLKSLEFIDLSEN------SLISLSNLSFVKHIYLQNNAI 212
+SEN + G + + L +L ++LS N +L L L +K + L N +
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 8/122 (6%)
Query: 1 ILPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFE--GNIPYSVGE 58
I L N +R L + + + E L F L +L + N+P +
Sbjct: 14 IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----K 69
Query: 59 MKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM-NLTDLGSLYLD 117
+ +L L+LS N + +L L+LS N + L L SL L
Sbjct: 70 LPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128
Query: 118 NN 119
N
Sbjct: 129 NC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-05
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
LD + G+I + N+ L+L N L + L ++ L+LS N++ G +
Sbjct: 31 LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL 87
Query: 426 PPQLTELNFLSNFNVSYNNLS 446
+L L++ N+S N L
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 177 LNNLKSLEFIDLSENSLISLSNLSF---VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233
+LEF+ L LIS+SNL +K + L N I G + + + L L+L
Sbjct: 45 TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104
Query: 234 NKL--FGRIPHQINERSNLHVLLLRGN 258
NKL + + + L L L
Sbjct: 105 NKLKDISTL-EPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 28/158 (17%)
Query: 41 LDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQ 100
+DM + + ++EL LD ++N + + ++L++L L N
Sbjct: 8 MDMKRRIHLELRNRTPAAVRELV-LDNCKSNDGKIEG--LTAEFVNLEFLSLINVGL--I 62
Query: 101 LFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS 160
N L L L L N G + L LN+S N + + S L
Sbjct: 63 SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK--------LKDISTLE 114
Query: 161 VLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSN 198
L L+ L+ +DL + +L++
Sbjct: 115 P---------------LKKLECLKSLDLFNCEVTNLND 137
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 177 LNNLKSLEFIDLSENSLIS----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232
++ L +D +++ + ++ + L N + + + L L L+L
Sbjct: 23 PAAVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPK--LKKLELS 79
Query: 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQG-RIPNQLCQLRKLSIMDLSRN 282
+N++FG + + NL L L GN L+ L +L L +DL
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 107 NLTDLGSLYLDNNHFS-GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165
+D+ L LDN+ + GK+ L L+ N L+ I + + + L L +S
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72
Query: 166 ENYLQGNIPVQLNNLKSLEFIDLSEN------SLISLSNLSFVKHIYLQNNAI 212
+N + G + V +L ++LS N ++ L L +K + L N +
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFE--GNIPYSVGEMKEL 62
L N ++ L + ++ + E L F++L +L N+P ++ +L
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKL 66
Query: 63 TILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM-NLTDLGSLYLDNN 119
L+LS N + + C +L L+LS N + L +L SL L N
Sbjct: 67 KKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
LD S + G++ + + + L+ N L+ + L ++ L+LS N++SG +
Sbjct: 24 LDNSRSN-EGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGL 80
Query: 426 PPQLTELNFLSNFNVSYNNLS 446
+ L++ N+S N +
Sbjct: 81 EVLAEKCPNLTHLNLSGNKIK 101
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 7e-05
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 177 LNNLKSLEFIDLSENSLISLSNLSF---VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233
+ + LEF+ L S++NL +K + L +N + G + + + L L+L
Sbjct: 38 TDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97
Query: 234 NKLFG-RIPHQINERSNLHVLLLRGN 258
NK+ + + NL L L
Sbjct: 98 NKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 9e-05
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 177 LNNLKSLEFIDLSENSLIS----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232
+++K L +D S ++ ++ + N + + + L L L+L
Sbjct: 16 PSDVKELV-LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNK--LKKLELS 72
Query: 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQG-RIPNQLCQLRKLSIMDLSRN 282
DN++ G + + NL L L GN ++ L +L L +DL
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 8e-04
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 30/142 (21%)
Query: 58 EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117
++KEL LD SR+N + L++L N LT +
Sbjct: 18 DVKELV-LDNSRSNEGKLEG--LTDEFEELEFLSTINV-----------GLTSI------ 57
Query: 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG-NIPVQ 176
L L+ L +S+N +SG + L+ L +S N ++ +
Sbjct: 58 ---------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP 108
Query: 177 LNNLKSLEFIDLSENSLISLSN 198
L L++L+ +DL + +L++
Sbjct: 109 LKKLENLKSLDLFNCEVTNLND 130
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 10/111 (9%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFE--GNIPYSVGEMKELTILDLSR 69
+ R LD+ + ENLG + +D S N P ++ L L ++
Sbjct: 20 RDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDGFPL----LRRLKTLLVNN 73
Query: 70 NNFTGKLPRPIVSSCLSLDWLDLSNNNFYG-QLFPNYMNLTDLGSLYLDNN 119
N ++ + + L L L+NN+ +L L L + N
Sbjct: 74 NRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 19/131 (14%)
Query: 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS-TLLRVLNVSNNMLSGD 148
+ L+ + Y N L L + + L ++ ++ S+N +
Sbjct: 2 VKLTAELI--EQAAQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRK- 56
Query: 149 IPHWIGNFS---VLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN------SLISLSNL 199
+ F L LL++ N + L L + L+ N L L++L
Sbjct: 57 ----LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112
Query: 200 SFVKHIYLQNN 210
+ ++ + N
Sbjct: 113 KSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 168 YLQGNIPVQLNNL----KSLEFIDLSENSLISLSNLSFVKH---IYLQNNAIKGLIPIAL 220
L+G + NL + ID S+N + L ++ + + NN I +
Sbjct: 25 DLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLD 84
Query: 221 LRSSTLLTLDLRDNKLFGRIPHQINERS---NLHVLLLRGN 258
L L L +N L ++ + +L L + N
Sbjct: 85 QALPDLTELILTNNSL--VELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
LDL G + I L A++ S+N + + F L+ +++L ++ N++
Sbjct: 24 LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIG 80
Query: 426 PPQLTELNFLSNFNVSYNNLS 446
L L+ ++ N+L
Sbjct: 81 EGLDQALPDLTELILTNNSLV 101
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 22/146 (15%)
Query: 58 EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117
LDL + + ++ D +D S+N + + L L +L ++
Sbjct: 17 NAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVN 72
Query: 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLS--GDIPHWIGNFSVLSVLLMSENYLQGNIPV 175
NN + L L ++NN L GD+ + + L+ L + N PV
Sbjct: 73 NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYL-----CILRN-PV 125
Query: 176 Q---------LNNLKSLEFIDLSENS 192
+ + + +D +
Sbjct: 126 TNKKHYRLYVIYKVPQVRVLDFQKVK 151
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 57/176 (32%)
Query: 51 NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNN--------FYGQLF 102
+IP L L+ N FT I L ++ SNN F G
Sbjct: 29 HIPQYT------AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG--- 79
Query: 103 PNYMNLTDLGSLYLDNNH---FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL 159
+ + + L +N KM GL L+ L + +N ++ + + +F
Sbjct: 80 -----ASGVNEILLTSNRLENVQHKMFKGL---ESLKTLMLRSNRIT-CVGN--DSF--- 125
Query: 160 SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL-----SNLSFVKHIYLQNN 210
L S+ + L +N + ++ L + + L N
Sbjct: 126 ------------------IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 22/124 (17%)
Query: 172 NIPVQLNNLKSLEFIDLSENSLISLS------NLSFVKHIYLQNNAIKGLIPIALLRSST 225
+IP L L+ N L L ++ I NN I + A +S
Sbjct: 29 HIPQYTAEL------RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82
Query: 226 LLTLDLRDNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPN----QLCQLRKLSIMDLS 280
+ + L N+L + H++ + +L L+LR N + + N L +R LS L
Sbjct: 83 VNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLS---LY 137
Query: 281 RNRL 284
N++
Sbjct: 138 DNQI 141
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 35/260 (13%), Positives = 74/260 (28%), Gaps = 47/260 (18%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEM-----KELTILD 66
L ++++S L +F + L + N+ + ++ ++T L
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLR 161
Query: 67 LSRNNFT---GKLPRPIVSSCLSLDWLDLSNNNFYGQ--------LFPNYMNLTDLGSLY 115
LS N T + ++ S+ L L + + L N L L
Sbjct: 162 LSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN----RQLQELN 217
Query: 116 LDNNHFSGK----MTDGLLSSTLLRVLNVSNNMLSGDIPHWIG-------NFSVLSVLLM 164
+ N + L +L++ N LS + + + + V L
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277
Query: 165 SENYL----QGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAI--KGLIPI 218
+ + NL S + + + + L L+++
Sbjct: 278 EGTAVSEYWSVILSEVQRNLNSWDRARVQRH--LELLLRD------LEDSRGATLNPWRK 329
Query: 219 A--LLRSSTLLTLDLRDNKL 236
A L + L +
Sbjct: 330 AQLLRVEGEVRALLEQLGSS 349
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 27/151 (17%)
Query: 63 TILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPN--YMNLTDLGSLYLDNNH 120
IL L N T KL + S ++L L L +N P + +LT L L L N
Sbjct: 43 QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 121 FSGKMTDGLLSS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNN 179
+ + + L+ L + N L+ +P I + L+ L + +N L+ +
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 180 LKSLEFIDLSENSLISLSNLSFVKHIYLQNN 210
L SL H YL N
Sbjct: 158 LSSL-------------------THAYLFGN 169
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 38/182 (20%)
Query: 16 LDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSV-GEMKELTILDLSRNNFTG 74
LD+ S + L + KL +L++ N + + V ++ EL L L+ N
Sbjct: 40 LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA- 96
Query: 75 KLPRPIVSSCLSLDWLDLSNNNFYGQL--FPNYM--NLTDLGSLYLDNNHFSGKMTDGLL 130
LP + LD L L N QL P+ + LT L L L+ N + G
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGN----QLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151
Query: 131 SS-TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLS 189
T L+ L++S N L +PH G F + L L+ I L
Sbjct: 152 DKLTNLQTLSLSTNQLQS-VPH--GAF---------------------DRLGKLQTITLF 187
Query: 190 EN 191
N
Sbjct: 188 GN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 45/181 (24%), Positives = 61/181 (33%), Gaps = 33/181 (18%)
Query: 109 TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168
D L L + + T L LN+ N L
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--------------------- 73
Query: 169 LQGNIPVQLNNLKSLEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPIALLRS 223
L + L L +L L+ N L SL F + +YL N +K L P +
Sbjct: 74 LSAGVFDDLTELGTL---GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDR 129
Query: 224 STLLT-LDLRDNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281
T L L L N+L IP ++ +NL L L N LQ +L KL + L
Sbjct: 130 LTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188
Query: 282 N 282
N
Sbjct: 189 N 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 162 LLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS-----NLSFVKHIYLQNNAIKGLI 216
L + L L L +++L N L +LS +L+ + + L NN + L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 217 PIALLRSSTLLTLDLRDNKLFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLC-QLRKL 274
+ L L L N+L +P + +R + L L L N LQ IP +L L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNL 157
Query: 275 SIMDLSRNRL 284
+ LS N+L
Sbjct: 158 QTLSLSTNQL 167
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 172 NIPVQLNNLKSLEFIDLSENSLISLSNLS---FVKHIYLQNNAIKGLIPIALLRSSTLLT 228
+ L+ LK+ + + LS N++ +S+LS ++ + L N IK + + + + TL
Sbjct: 39 KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAV-ADTLEE 97
Query: 229 LDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQG-RIPNQLCQLRKLSIMDLSRN 282
L + N++ + I + NL VL + N + ++L L KL + L+ N
Sbjct: 98 LWISYNQI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 28/167 (16%)
Query: 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT---GKLPRPIVSSCLSLDWLDLS 93
+ + L E + ++ +K L LS NN +S +L L L
Sbjct: 26 EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKISS------LSGMENLRILSLG 78
Query: 94 NNNFYGQLFPNYMNLTD-LGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLS--GDIP 150
N + N + D L L++ N + G+ LRVL +SNN ++ G+I
Sbjct: 79 RNLI--KKIENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEID 134
Query: 151 HWIGNFSVLSVLLMSENYLQGNIPVQ----------LNNLKSLEFID 187
+ L LL++ N L + + L +L+ +D
Sbjct: 135 K-LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 4e-05
Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 32/157 (20%)
Query: 4 RLPNAKYDKLRHLDISSNNFSGKLPENLGI-IFQKLIYLDMS--KNNFEGNIP------- 53
+ L+ L+I S + E++ L L + ++ +
Sbjct: 186 SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245
Query: 54 YSVGEMKELTILDLSRNNFTGKLPRPIVSSCL--SLDWLDLSNNNFYGQLFPNYMNLTDL 111
+S L L + + + S + L+ +D+S LTD
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-----------LTDE 294
Query: 112 GSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGD 148
G+ L D + L+ +N+ N LS +
Sbjct: 295 GARLL---------LDHVDKIKHLKFINMKYNYLSDE 322
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 2e-04
Identities = 10/73 (13%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 366 LDLSGNEFSGEIPWKIGQ---LQNIRALNLSNNLLSG----AIPESFSNLKMIESLDLSR 418
L + E + + L + +++S +L+ + + +K ++ +++
Sbjct: 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316
Query: 419 NKLSGQIPPQLTE 431
N LS ++ +L +
Sbjct: 317 NYLSDEMKKELQK 329
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 14/101 (13%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425
L L GN+F+ +P ++ +++ ++LSNN +S +SFSN+ + +L LS N+L I
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93
Query: 426 PP----QLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCS 462
PP L L LS + N++S +P+ F+D S
Sbjct: 94 PPRTFDGLKSLRLLS---LHGNDISV-VPE----GAFNDLS 126
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 39/146 (26%), Positives = 54/146 (36%), Gaps = 42/146 (28%)
Query: 51 NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM--NL 108
IP V T L L N FT L +S+ L +DLSNN N N+
Sbjct: 28 GIPRDV------TELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRI--STLSNQSFSNM 77
Query: 109 TDLGSLYLDNNHFS---GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165
T L +L L N + DGL LR+L++ N +S +P G F
Sbjct: 78 TQLLTLILSYNRLRCIPPRTFDGL---KSLRLLSLHGNDISV-VPE--GAF--------- 122
Query: 166 ENYLQGNIPVQLNNLKSLEFIDLSEN 191
N+L +L + + N
Sbjct: 123 ------------NDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 168 YLQGN----IPVQLNNLKSLEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPI 218
YL GN +P +L+N K L IDLS N + +LSN SF + + L N ++ + P
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
Query: 219 ALLRSSTLLTLDLRDNKLFGRIPH 242
+L L L N + +P
Sbjct: 97 TFDGLKSLRLLSLHGNDI-SVVPE 119
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 33/210 (15%)
Query: 16 LDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGK 75
++ + + + I + S I + + L L N
Sbjct: 24 ANLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQGIQ----YLPNVRYLALGGNKLH-D 77
Query: 76 LPRPIVSSCLSLDWLDLSNNNFYGQLFPN--YMNLTDLGSLYLDNNHFSGKMTDGLLSS- 132
+ + +L +L L+ N Q PN + LT+L L L N + DG+
Sbjct: 78 IS--ALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKL 132
Query: 133 TLLRVLNVSNNMLSGDIPHWIGNF---SVLSVLLMSENYLQGNIPV----QLNNLKSLEF 185
T L LN+++N L +P G F + L+ L +S N LQ ++P +L LK L
Sbjct: 133 TNLTYLNLAHNQLQ-SLPK--GVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDL-- 186
Query: 186 IDLSENSLISL-----SNLSFVKHIYLQNN 210
L +N L S+ L+ +++I+L +N
Sbjct: 187 -RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 44/148 (29%)
Query: 51 NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQL--FPNYM-- 106
+IP T L L+ N + L L+L N QL
Sbjct: 26 DIPLHT------TELLLNDNELGRISSDGLFGRLPHLVKLELKRN----QLTGIEPNAFE 75
Query: 107 NLTDLGSLYLDNNHFS---GKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLL 163
+ + L L N KM GL L+ LN+ +N +S + G+F
Sbjct: 76 GASHIQELQLGENKIKEISNKMFLGL---HQLKTLNLYDNQISC-VMP--GSF------- 122
Query: 164 MSENYLQGNIPVQLNNLKSLEFIDLSEN 191
+L SL ++L+ N
Sbjct: 123 --------------EHLNSLTSLNLASN 136
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.97 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.96 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.96 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.95 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.92 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.92 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.91 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.91 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.91 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.91 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.91 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.9 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.9 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.9 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.9 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.9 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.9 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.86 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.83 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.83 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.83 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.83 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.82 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.82 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.82 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.81 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.8 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.8 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.79 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.78 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.78 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.78 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.76 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.75 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.75 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.74 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.74 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.73 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.72 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.71 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.71 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.71 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.7 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.69 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.69 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.69 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.68 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.68 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.68 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.64 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.63 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.61 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.58 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.57 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.53 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.53 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.53 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.51 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.51 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.51 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.5 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.38 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.38 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.37 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.29 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.28 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.2 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.92 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.88 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.55 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.52 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.44 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.35 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.33 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.23 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.45 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.28 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.24 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.14 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-59 Score=501.58 Aligned_cols=479 Identities=33% Similarity=0.467 Sum_probs=372.1
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
|...+++|++|++++|.+++.+|..++..+++|++|++++|.+++..|..|+++++|++|++++|.+++.+|...+..++
T Consensus 264 ~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 264 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred CccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 34467778888888888877788777765578888888888888888888888888888888888888788887678888
Q ss_pred CCCEEEccCccccccCCccccCCC-CCCEEEcccCCCCCcCChhhhC--CCCCcEEEcccCcCCCCcChhccCCCCccEE
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLT-DLGSLYLDNNHFSGKMTDGLLS--STLLRVLNVSNNMLSGDIPHWIGNFSVLSVL 162 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 162 (515)
+|++|++++|.+++..|..+.+++ +|++|++++|++++..+..+.. +++|++|++++|.+++.+|..+..+++|++|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 888888888888877788888777 8888888888888777777766 7788999999998888888888888999999
Q ss_pred EccCccccccccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 163 LMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 163 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
++++|++++.+|..+..+++|+.|++++|++.. +..++.|++|++++|++++.+|..+..+++|++|++++|+++
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 999999888888888888999999999988853 336788899999999998888888888899999999999998
Q ss_pred CcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCC
Q 043235 238 GRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDS 317 (515)
Q Consensus 238 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 317 (515)
+.+|.++..+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|..+.....+..........+.+......
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 88888888899999999999999888888888999999999999999888888877665444332222111111110000
Q ss_pred CccccCC----cccccCccccccccccccceeeeccCccc---cccccccccCCEEEcCCCcCccccccchhccccCCee
Q 043235 318 PVAYYNS----SLELQLPVELHFRQDQQVGAKFVTKNRYE---FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRAL 390 (515)
Q Consensus 318 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 390 (515)
....... ......+..+ .............+... ......+++|++|||++|++++.+|..++.+++|++|
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQL--NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGG--GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred cccccccccccccccccchhh--hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 0000000 0000000000 00000000000000000 0011347899999999999999999999999999999
Q ss_pred ccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCCCCC
Q 043235 391 NLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALC 470 (515)
Q Consensus 391 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~c 470 (515)
+|++|++++.+|..|+.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.++...++.|||++|
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEE
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCCC
Q 043235 471 GSMIKRKCSSALTPPAT 487 (515)
Q Consensus 471 ~~~l~~~~~~~~~~~~~ 487 (515)
|.|+. .|....+..++
T Consensus 742 g~~l~-~C~~~~~~~~~ 757 (768)
T 3rgz_A 742 GYPLP-RCDPSNADGYA 757 (768)
T ss_dssp STTSC-CCCSCC-----
T ss_pred CCCCc-CCCCCccCCCC
Confidence 99987 88766555433
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-51 Score=443.46 Aligned_cols=440 Identities=31% Similarity=0.423 Sum_probs=322.1
Q ss_pred CCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCC
Q 043235 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSC 84 (515)
Q Consensus 5 ~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l 84 (515)
.+...+++|++|++++|.+++.+|. +.. +++|++|++++|.+++..|..+.++++|++|++++|.+++.+|.. .+
T Consensus 194 ~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l 268 (768)
T 3rgz_A 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PL 268 (768)
T ss_dssp CBCTTCTTCCEEECCSSCCCSCCCB-CTT-CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CC
T ss_pred CCcccCCcCCEEECcCCcCCCCCcc-ccc-CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---cc
Confidence 3457788999999999999876776 554 788999999999998888888899999999999999888666652 67
Q ss_pred CCCCEEEccCccccccCCccccCC-CCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChh-ccCCCCccEE
Q 043235 85 LSLDWLDLSNNNFYGQLFPNYMNL-TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHW-IGNFSVLSVL 162 (515)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L 162 (515)
++|++|++++|.+++..|..+... ++|++|++++|++++..|..+..+++|++|++++|.+++.+|.. +..+++|++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 888888888888887777777664 88888888888888778888888888888888888887666654 7888888888
Q ss_pred EccCccccccccccccCCC-CCcEEeCCCCCCCC-----cCC--CCcccEEEcccCceeeeccccccCCCCccEEeccCC
Q 043235 163 LMSENYLQGNIPVQLNNLK-SLEFIDLSENSLIS-----LSN--LSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDN 234 (515)
Q Consensus 163 ~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~-----l~~--l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n 234 (515)
++++|.+.+.+|..+..++ +|++|++++|++.. +.. ++.|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 8888888877777777776 78888888776631 112 556777777777777777777777777777777777
Q ss_pred ccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCC
Q 043235 235 KLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANN 314 (515)
Q Consensus 235 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 314 (515)
++++..|..+..+++|+.|++++|++++.+|..+..+++|++|++++|++++.+|..+.+++.|+.+....+......
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-- 506 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI-- 506 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC--
Confidence 777677777777777777777777777667777777777777777777777667776666666665544322111000
Q ss_pred CCCCccccCCcccccCccccccccccccceeeeccCcccc---ccccccccCCEEEcCCCcCccc---------------
Q 043235 315 VDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF---FIGSNLNYMAGLDLSGNEFSGE--------------- 376 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~--------------- 376 (515)
+.. +.....+..-.+..+.... .....+++|++|++++|++++.
T Consensus 507 ---p~~---------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 507 ---PKW---------------IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp ---CGG---------------GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred ---ChH---------------HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 000 0000001111111111100 0012245555555555555544
Q ss_pred -------------------------------------------------------cccchhccccCCeeccCCccccccC
Q 043235 377 -------------------------------------------------------IPWKIGQLQNIRALNLSNNLLSGAI 401 (515)
Q Consensus 377 -------------------------------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~ 401 (515)
+|..+..+++|++|+|++|++++.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 4444556788999999999999999
Q ss_pred hhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCC
Q 043235 402 PESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSAL 469 (515)
Q Consensus 402 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~ 469 (515)
|..|+.+++|+.|+|++|++++.+|..+.++++|+.|||++|+++|.+|. ...+..++.+++.+|+..
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 99999999999999999999999999999999999999999999999998 567888999999998653
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-50 Score=423.20 Aligned_cols=468 Identities=20% Similarity=0.207 Sum_probs=316.8
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.+.+++|++++|.+++..|..+.. +++|++|+|++|.+.+..|.+|.++++|++|++++|.++ .++...+
T Consensus 24 l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 101 (606)
T 3t6q_A 24 LNEIPGTLPNSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETAL 101 (606)
T ss_dssp CSSCCTTSCTTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTT
T ss_pred cccCcCCCCCcCcEEEccCCccCcCChhHhcc-CccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhh
Confidence 45667666778999999999998555555555 789999999999999888899999999999999999998 4544456
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc-
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS- 160 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~- 160 (515)
.++++|++|++++|.+++..+..+.++++|++|++++|++.+.....+..+++|++|++++|.+++..+..++.+++|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence 8899999999999999877677888999999999999998875545555688899999999988877777788888888
Q ss_pred -EEEccCccccccccccccCC---------------------------------------------------CCCcEEeC
Q 043235 161 -VLLMSENYLQGNIPVQLNNL---------------------------------------------------KSLEFIDL 188 (515)
Q Consensus 161 -~L~l~~n~l~~~~~~~l~~l---------------------------------------------------~~L~~L~L 188 (515)
+|++++|.+.+..|..+... .+|+.|++
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 77888887776554433211 03445555
Q ss_pred CCCCCCCc-----CCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCC
Q 043235 189 SENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGR 263 (515)
Q Consensus 189 ~~n~l~~l-----~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 263 (515)
++|.+..+ ..+++|++|++++|.++. +|..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+.
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 55555332 234556666666666553 344555555666666666665555555555555566666665555533
Q ss_pred CC-ccccCCCCCCEEECCCCcCcCCC--CccccCCcccccccCCCCCcccccC-CCCCCcc-----ccCCcccccCcccc
Q 043235 264 IP-NQLCQLRKLSIMDLSRNRLNGPI--PSCLGNVPFWREATDDDSSEFFYAN-NVDSPVA-----YYNSSLELQLPVEL 334 (515)
Q Consensus 264 ~~-~~~~~l~~L~~L~L~~n~i~~~~--p~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~ 334 (515)
++ ..+..+++|++|++++|.+.+.. +..+..++.|+.+....+....... ....... .......... ...
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~ 419 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-AQS 419 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT-TCC
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc-cch
Confidence 32 23555555555555555555433 4445555555444333221111000 0000000 0000000000 000
Q ss_pred ccccccccceeeeccCccccc---cccccccCCEEEcCCCcCccc---cccchhccccCCeeccCCccccccChhhhcCc
Q 043235 335 HFRQDQQVGAKFVTKNRYEFF---IGSNLNYMAGLDLSGNEFSGE---IPWKIGQLQNIRALNLSNNLLSGAIPESFSNL 408 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 408 (515)
.+.....+..-....+..... ....+++|++|++++|++++. .+..+..+++|++|++++|++++..|..|..+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 011111222222222222111 123488999999999999863 23568899999999999999998889999999
Q ss_pred cCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCcc
Q 043235 409 KMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMI 474 (515)
Q Consensus 409 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~l 474 (515)
++|++|+|++|++++..|..+..++.| .|++++|++++.+|. ...+.+++.+.+.|||+.|.|+.
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999999999 999999999988887 46788999999999999998874
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-49 Score=413.85 Aligned_cols=448 Identities=18% Similarity=0.115 Sum_probs=310.9
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.+++++|++++|.+++..+..+.. +++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+
T Consensus 23 l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~ 100 (606)
T 3vq2_A 23 LSKVPDDIPSSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSF 100 (606)
T ss_dssp CSSCCTTSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSS
T ss_pred cccCCCCCCCCcCEEECCCCCcCEeChhhccC-CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhc
Confidence 45677767788999999999998444445544 789999999999999888888999999999999999998 5644556
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCC-cCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG-KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS 160 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 160 (515)
.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+.+|+
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 889999999999999987777789999999999999999885 4588899999999999999988876666555544333
Q ss_pred ----EEEccCccccccccccc-----------------------------------------------------------
Q 043235 161 ----VLLMSENYLQGNIPVQL----------------------------------------------------------- 177 (515)
Q Consensus 161 ----~L~l~~n~l~~~~~~~l----------------------------------------------------------- 177 (515)
+|++++|.+.+..+..+
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 55555555553333222
Q ss_pred ---------------------cCCCCCcEEeCCCCCCCCc---CCCCcccEEEcccCceeeeccccccCCCCccEEeccC
Q 043235 178 ---------------------NNLKSLEFIDLSENSLISL---SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233 (515)
Q Consensus 178 ---------------------~~l~~L~~L~L~~n~l~~l---~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~ 233 (515)
..+++|+.|++++|.+..+ ..+++|++|++++|.+. .+| .+ .+++|++|++++
T Consensus 261 l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~ 337 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTM 337 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEES
T ss_pred ccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccc-cC-CCCccceeeccC
Confidence 2233444444444444322 24445666666666663 233 23 555566666665
Q ss_pred CccCCcCchhhhcCCCcCEEEccCccCCCC--CCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccc
Q 043235 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGR--IPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFY 311 (515)
Q Consensus 234 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~ 311 (515)
|+..+.. .+..+++|++|++++|++++. .+..+..+++|++|++++|.+.+ +|..+..++.|+.+....+.....
T Consensus 338 n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 338 NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence 5433222 344566666666666666644 25556666666666666666653 445555555555544332211110
Q ss_pred cCCCCCCccccCCcccccCccccccccccccceeeeccCcccc---ccccccccCCEEEcCCCcCcc-ccccchhccccC
Q 043235 312 ANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF---FIGSNLNYMAGLDLSGNEFSG-EIPWKIGQLQNI 387 (515)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 387 (515)
... . .+.....+..-....+.... .....+++|++|++++|.+++ .+|..+..+++|
T Consensus 415 ~~~----~---------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 415 TEF----S---------------AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475 (606)
T ss_dssp TTT----T---------------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cCh----h---------------hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence 000 0 00000001111111111111 011347899999999999997 478889999999
Q ss_pred CeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccC-CCCcccccCC
Q 043235 388 RALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFA-TFDDCSYKGN 466 (515)
Q Consensus 388 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~-~l~~~~~~gn 466 (515)
++|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|++|++++|+++...+....+. +++.+.+.||
T Consensus 476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSC
T ss_pred CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCC
Confidence 999999999999999999999999999999999999889999999999999999999995444445554 5999999999
Q ss_pred CCCCCCccCC
Q 043235 467 SALCGSMIKR 476 (515)
Q Consensus 467 ~~~c~~~l~~ 476 (515)
|+.|+|++..
T Consensus 556 ~~~c~c~~~~ 565 (606)
T 3vq2_A 556 SVACICEHQK 565 (606)
T ss_dssp CCCCSSTTHH
T ss_pred CcccCCccHH
Confidence 9999998753
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-48 Score=411.74 Aligned_cols=468 Identities=19% Similarity=0.203 Sum_probs=289.6
Q ss_pred CCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHh
Q 043235 3 PRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVS 82 (515)
Q Consensus 3 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~ 82 (515)
..+|..-.+++++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|...|.
T Consensus 17 ~~ip~~~~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~ 94 (680)
T 1ziw_A 17 TQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFA 94 (680)
T ss_dssp SSCCSCSCTTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred cccccccCCCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhc
Confidence 4455544566777777777776 344332333667777777777777666666777777777777777766 56665556
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhcc--CCCCcc
Q 043235 83 SCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG--NFSVLS 160 (515)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~ 160 (515)
++++|++|++++|.+++..+..|+++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 667777777777766655555666666666666666666665555566666666666666655544333222 223333
Q ss_pred EEEccCcccccc---------------------------------------------------ccccccCCC--CCcEEe
Q 043235 161 VLLMSENYLQGN---------------------------------------------------IPVQLNNLK--SLEFID 187 (515)
Q Consensus 161 ~L~l~~n~l~~~---------------------------------------------------~~~~l~~l~--~L~~L~ 187 (515)
+|++++|.+.+. .+..+..++ +|+.|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 333333333322 222232222 255555
Q ss_pred CCCCCCCC-----cCCCCcccEEEcccCceeeeccc---------------------------------cccCCCCccEE
Q 043235 188 LSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPI---------------------------------ALLRSSTLLTL 229 (515)
Q Consensus 188 L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~---------------------------------~~~~~~~L~~L 229 (515)
+++|++.. +..+++|++|++++|.+++..+. .+..+++|++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 55555532 22445555555555555544332 33445566666
Q ss_pred eccCCccCCcCchhhhcCCCcCEEEc----------------------------cCccCCCCCCccccCCCCCCEEECCC
Q 043235 230 DLRDNKLFGRIPHQINERSNLHVLLL----------------------------RGNYLQGRIPNQLCQLRKLSIMDLSR 281 (515)
Q Consensus 230 ~Ls~n~i~~~~~~~~~~l~~L~~L~L----------------------------~~n~i~~~~~~~~~~l~~L~~L~L~~ 281 (515)
++++|++.+..+..|..+++|++|++ ++|++++..+.++..+++|++|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 66667776666665665555555554 44556656677788889999999999
Q ss_pred CcCcCCCC-ccccCCcccccccCCCCCcccccCC-------CCCCccccCCccc-ccCccccccccccccceeeeccCcc
Q 043235 282 NRLNGPIP-SCLGNVPFWREATDDDSSEFFYANN-------VDSPVAYYNSSLE-LQLPVELHFRQDQQVGAKFVTKNRY 352 (515)
Q Consensus 282 n~i~~~~p-~~~~~l~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (515)
|.+.+.+| ..+.+++.++.+....+........ ............. ...+ ..+.....+..-.+..+..
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p--~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP--SPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS--CTTTTCTTCCEEECCSSCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC--cccccCCCCCEEECCCCCC
Confidence 99877555 6777777777765544322111100 0000000000000 0000 0111222222223333332
Q ss_pred cccc---ccccccCCEEEcCCCcCccccc--------cchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcc
Q 043235 353 EFFI---GSNLNYMAGLDLSGNEFSGEIP--------WKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKL 421 (515)
Q Consensus 353 ~~~~---~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 421 (515)
.... ...+++|++|++++|++++..+ ..+.++++|++|+|++|+++.+.+..|.++++|++|+|++|++
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCC
Confidence 2221 2457889999999999986422 2378899999999999999966667899999999999999999
Q ss_pred cccCCccccCCCCCCEEecccCcccccCCCC-c-ccCCCCcccccCCCCCCCCcc
Q 043235 422 SGQIPPQLTELNFLSNFNVSYNNLSGPIPDK-E-QFATFDDCSYKGNSALCGSMI 474 (515)
Q Consensus 422 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~-~~~~l~~~~~~gn~~~c~~~l 474 (515)
++..+..|..+++|+.|++++|++++..|.. . .+.+++.+.+.||||.|+|++
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9777778899999999999999999887763 3 688999999999999999985
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-48 Score=421.73 Aligned_cols=467 Identities=20% Similarity=0.193 Sum_probs=353.2
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCccccc-CCccccCCCCCCEEECcCCcCcccCchHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGN-IPYSVGEMKELTILDLSRNNFTGKLPRPI 80 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~l~~~~ 80 (515)
+..+|. ..+++++||+++|.+++..|..+.. +++|++|+|++|...+. .|.+|.++++|++|+|++|.++ .++...
T Consensus 16 L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~ 92 (844)
T 3j0a_A 16 LTQVPQ-VLNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDA 92 (844)
T ss_dssp SSCCCS-SCTTCCEEEEESCCCCEECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTS
T ss_pred CCCCCC-CCCCcCEEECCCCcCCccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhH
Confidence 456777 7789999999999998655666655 89999999999955444 4888999999999999999998 554455
Q ss_pred HhCCCCCCEEEccCccccccCCcc--ccCCCCCCEEEcccCCCCCcCC-hhhhCCCCCcEEEcccCcCCCCcChhccCC-
Q 043235 81 VSSCLSLDWLDLSNNNFYGQLFPN--YMNLTDLGSLYLDNNHFSGKMT-DGLLSSTLLRVLNVSNNMLSGDIPHWIGNF- 156 (515)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l- 156 (515)
|.++++|++|++++|.+++..+.. +.++++|++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 688999999999999998755554 8999999999999999987654 578999999999999999998888888877
Q ss_pred -CCccEEEccCccccccccccccCCCC------CcEEeCCCCCCCCc---------------------------------
Q 043235 157 -SVLSVLLMSENYLQGNIPVQLNNLKS------LEFIDLSENSLISL--------------------------------- 196 (515)
Q Consensus 157 -~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~l--------------------------------- 196 (515)
++|+.|++++|.+.+..+..+..+.+ |+.|++++|.+...
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 78999999999988877776666655 89999998865210
Q ss_pred --------C--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCc
Q 043235 197 --------S--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPN 266 (515)
Q Consensus 197 --------~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 266 (515)
. ..+.|++|++++|.+.+..+..+..+++|++|++++|++.+..+..|..+++|++|+|++|++++..+.
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 0 125789999999999988888899999999999999999888888899999999999999999888888
Q ss_pred cccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccC--CCCCCccccCCcccc--c----Ccccccc--
Q 043235 267 QLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYAN--NVDSPVAYYNSSLEL--Q----LPVELHF-- 336 (515)
Q Consensus 267 ~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~----~~~~~~~-- 336 (515)
.|..+++|++|++++|.+.+..+..+..++.|+.+....+....... .........+..... . ....+..
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCc
Confidence 89999999999999999988777788888888775544322111100 000000000000000 0 0000000
Q ss_pred ----------ccccccceeeeccCccccc----cccccccCCEEEcCCCcCc-----cccccchhccccCCeeccCCccc
Q 043235 337 ----------RQDQQVGAKFVTKNRYEFF----IGSNLNYMAGLDLSGNEFS-----GEIPWKIGQLQNIRALNLSNNLL 397 (515)
Q Consensus 337 ----------~~~~~~~~~~~~~~~~~~~----~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l 397 (515)
.....+..-.+..+..... ....+++|+.|+|++|.++ +..+..|..+++|++|+|++|++
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence 0111122222222222211 1123567777788877775 33345678889999999999999
Q ss_pred cccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCCCCCCCccC
Q 043235 398 SGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIK 475 (515)
Q Consensus 398 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~c~~~l~ 475 (515)
++..|..|..+++|++|+|++|++++..+..+. ++|+.|++++|++++..|.. +..+..+++.|||+.|+|++.
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred cccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 988888899999999999999999977776666 88999999999999988853 668999999999999988753
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-48 Score=405.20 Aligned_cols=391 Identities=17% Similarity=0.231 Sum_probs=286.7
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcc------------------------------------------
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNF------------------------------------------ 48 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i------------------------------------------ 48 (515)
.+++.|+|+++.+.|.+|..++. +++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~-L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGG-CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHHhc-CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 47999999999999999999987 89999999999854
Q ss_pred ------------------------------------cccCCccccCCCCCCEEECcCCcCccc-----------------
Q 043235 49 ------------------------------------EGNIPYSVGEMKELTILDLSRNNFTGK----------------- 75 (515)
Q Consensus 49 ------------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------- 75 (515)
++ +|..++++++|++|+|++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 33 566677777777777777777643
Q ss_pred CchHHHh--CCCCCCEEEccCccccccCCccccCCCCCCEEEcccCC-CCC-cCChhhhCC------CCCcEEEcccCcC
Q 043235 76 LPRPIVS--SCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH-FSG-KMTDGLLSS------TLLRVLNVSNNML 145 (515)
Q Consensus 76 l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~l 145 (515)
+|..+ . ++++|++|++++|.+.+..|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.+
T Consensus 239 ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred Cchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 66554 4 57777777777777766667777777777777777776 665 566666554 6777777777777
Q ss_pred CCCcCh--hccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC----CCCc-ccEEEcccCceeeeccc
Q 043235 146 SGDIPH--WIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS----NLSF-VKHIYLQNNAIKGLIPI 218 (515)
Q Consensus 146 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~----~l~~-L~~L~L~~n~i~~~~~~ 218 (515)
+ .+|. .++.+++|++|++++|.+.+.+| .+..+++|++|++++|++..++ .++. |++|++++|.++. +|.
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~ 394 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPN 394 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-CCS
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-cch
Confidence 7 5666 67777777777777777776666 6666777777777777664332 4556 7777777777763 455
Q ss_pred cccCCC--CccEEeccCCccCCcCchhhh-------cCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCC
Q 043235 219 ALLRSS--TLLTLDLRDNKLFGRIPHQIN-------ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP 289 (515)
Q Consensus 219 ~~~~~~--~L~~L~Ls~n~i~~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p 289 (515)
.+..+. +|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 555443 677777777777766666666 5667777777777777444444555677777777777776 333
Q ss_pred ccccC-CcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEc
Q 043235 290 SCLGN-VPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDL 368 (515)
Q Consensus 290 ~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 368 (515)
..... .. .....+++|++|+|
T Consensus 474 ~~~~~~~~----------------------------------------------------------~~~~~l~~L~~L~L 495 (636)
T 4eco_A 474 KNSLKDEN----------------------------------------------------------ENFKNTYLLTSIDL 495 (636)
T ss_dssp SSSSEETT----------------------------------------------------------EECTTGGGCCEEEC
T ss_pred HHHhcccc----------------------------------------------------------ccccccCCccEEEC
Confidence 22110 00 00012558999999
Q ss_pred CCCcCccccccchh--ccccCCeeccCCccccccChhhhcCccCCCeeeC------CCCcccccCCccccCCCCCCEEec
Q 043235 369 SGNEFSGEIPWKIG--QLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL------SRNKLSGQIPPQLTELNFLSNFNV 440 (515)
Q Consensus 369 s~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~l~~l~~L~~L~L 440 (515)
++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|++
T Consensus 496 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 496 RFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp CSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred cCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 999999 7777776 89999999999999996 8889999999999999 567788899999999999999999
Q ss_pred ccCcccccCCCCcccCCCCcccccCCCCCC
Q 043235 441 SYNNLSGPIPDKEQFATFDDCSYKGNSALC 470 (515)
Q Consensus 441 s~N~l~~~~p~~~~~~~l~~~~~~gn~~~c 470 (515)
++|++ +.+|... ..+++.+.+.+|+..|
T Consensus 574 s~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 574 GSNDI-RKVNEKI-TPNISVLDIKDNPNIS 601 (636)
T ss_dssp CSSCC-CBCCSCC-CTTCCEEECCSCTTCE
T ss_pred CCCcC-CccCHhH-hCcCCEEECcCCCCcc
Confidence 99999 6777743 3789999999999887
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-47 Score=395.87 Aligned_cols=426 Identities=19% Similarity=0.135 Sum_probs=326.1
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.+++++|++++|.+++..+..+.. +++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...|
T Consensus 19 l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 96 (570)
T 2z63_A 19 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAF 96 (570)
T ss_dssp CSSCCSSSCSSCCEEECCSCCCCEECTTTTTT-CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTT
T ss_pred ccccCCCccccccEEEccCCccCccChhHhhC-CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhh
Confidence 45677666778999999999998444444544 899999999999999888889999999999999999998 6776667
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCc-CChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc-
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL- 159 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L- 159 (515)
.++++|++|++++|+++...+..++++++|++|++++|.+.+. .|..+.++++|++|++++|.+++..+..++.+++|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 8999999999999999876666799999999999999999863 68899999999999999999987777777777777
Q ss_pred ---cEEEccCccccccccccccCCCCCcEEeCCCCCC-------------------------------------------
Q 043235 160 ---SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL------------------------------------------- 193 (515)
Q Consensus 160 ---~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l------------------------------------------- 193 (515)
+.+++++|.+.+..+..+... +|+.|++++|..
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred hhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence 788888887776555544433 445554444310
Q ss_pred --------------------CCcCCCCcccEEEcccCceeeecccccc--------------------CCCCccEEeccC
Q 043235 194 --------------------ISLSNLSFVKHIYLQNNAIKGLIPIALL--------------------RSSTLLTLDLRD 233 (515)
Q Consensus 194 --------------------~~l~~l~~L~~L~L~~n~i~~~~~~~~~--------------------~~~~L~~L~Ls~ 233 (515)
..+..++.|++|++++|.+++ +|..+. .+++|++|++++
T Consensus 256 ~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~ 334 (570)
T 2z63_A 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334 (570)
T ss_dssp GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEES
T ss_pred ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcC
Confidence 001123444555555554443 233333 344555555555
Q ss_pred CccCCcCchhhhcCCCcCEEEccCccCCCCC--CccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccc
Q 043235 234 NKLFGRIPHQINERSNLHVLLLRGNYLQGRI--PNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFY 311 (515)
Q Consensus 234 n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~ 311 (515)
|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+. +..++.|+.+....+.....
T Consensus 335 n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 554433332 56788999999999988554 67788899999999999998765444 77777666543332110000
Q ss_pred cCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeec
Q 043235 312 ANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALN 391 (515)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 391 (515)
. .......+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 412 ~----------------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 412 S----------------------------------------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp T----------------------------------------TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred c----------------------------------------chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 0 000113478999999999999988899999999999999
Q ss_pred cCCcccc-ccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCC
Q 043235 392 LSNNLLS-GAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSAL 469 (515)
Q Consensus 392 Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~ 469 (515)
+++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|. ...+.+++.+.+.+|++.
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 9999997 56889999999999999999999988899999999999999999999998776 567889999999999999
Q ss_pred CCCcc
Q 043235 470 CGSMI 474 (515)
Q Consensus 470 c~~~l 474 (515)
|.|+.
T Consensus 532 ~~~~~ 536 (570)
T 2z63_A 532 CSCPR 536 (570)
T ss_dssp CCTTT
T ss_pred CCCcc
Confidence 98875
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=392.84 Aligned_cols=441 Identities=18% Similarity=0.141 Sum_probs=333.9
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
.+..+++|++|++++|++++..|..+.. +++|++|+|++|.+++..|.+|+++++|++|++++|.++ .++...+..++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~ 129 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQK 129 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCT
T ss_pred HhccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCC
Confidence 4678999999999999998666666665 899999999999999888999999999999999999998 66545568899
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCc--EEEcccCcCCCCcChhccCC-------
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLR--VLNVSNNMLSGDIPHWIGNF------- 156 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~l------- 156 (515)
+|++|++++|.+++.....+..+++|++|++++|.+++..+..+..+++|+ +|++++|.+++..|..+...
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 999999999999876556666799999999999999988888899999999 88999998876655544321
Q ss_pred --------------------------------------------CCccEEEccCccccccccccccCCCCCcEEeCCCCC
Q 043235 157 --------------------------------------------SVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENS 192 (515)
Q Consensus 157 --------------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 192 (515)
.+++.|++++|.+.+..+..|..+++|++|++++|+
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 156777777787777767778888888888888888
Q ss_pred CCCcC----CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCc-hhhhcCCCcCEEEccCccCCCCC--C
Q 043235 193 LISLS----NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIP-HQINERSNLHVLLLRGNYLQGRI--P 265 (515)
Q Consensus 193 l~~l~----~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~--~ 265 (515)
+..++ .+++|++|++++|.+++..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|++++.. +
T Consensus 290 l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 76553 56778888888888887777777888888888888887765444 34777788888888888777554 5
Q ss_pred ccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCC--C---CCCccc--cCCcccccCcccccccc
Q 043235 266 NQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANN--V---DSPVAY--YNSSLELQLPVELHFRQ 338 (515)
Q Consensus 266 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~--~---~~~~~~--~~~~~~~~~~~~~~~~~ 338 (515)
..+..+++|++|++++|++.+..|..+..++.|+.+....+........ . ...... .........+ ..+..
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~ 447 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE--QLFDG 447 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT--TTTTT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH--HHHhC
Confidence 6677778888888888877777777777777776655443221111000 0 000000 0000000000 01111
Q ss_pred ccccceeeeccCcccc------ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCC
Q 043235 339 DQQVGAKFVTKNRYEF------FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIE 412 (515)
Q Consensus 339 ~~~~~~~~~~~~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 412 (515)
...+..-.+..+.... .....+++|++|++++|++++..|..|..+++|++|+|++|++++..|..|..++.|
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence 2222222233332221 123458999999999999998889999999999999999999999999999999999
Q ss_pred eeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC
Q 043235 413 SLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 413 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
+|++++|++++..|..+..+++|+.|++++|++.+..+.
T Consensus 527 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999988899999999999999999999987764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=390.58 Aligned_cols=418 Identities=18% Similarity=0.171 Sum_probs=326.0
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.++|++|++++|++++..|..+.. +++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+
T Consensus 17 l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 94 (549)
T 2z81_A 17 FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWF 94 (549)
T ss_dssp CSSCCSCCCTTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHH
T ss_pred cccccccCCCCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHh
Confidence 45677777789999999999999655666655 899999999999999888899999999999999999999 7777777
Q ss_pred hCCCCCCEEEccCcccccc-CCccccCCCCCCEEEcccCC-CCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc
Q 043235 82 SSCLSLDWLDLSNNNFYGQ-LFPNYMNLTDLGSLYLDNNH-FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL 159 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 159 (515)
.++++|++|++++|.+++. .+..++++++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 9999999999999999863 45789999999999999998 444445689999999999999999998889999999999
Q ss_pred cEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--------CCCcccEEEcccCceeeeccc-------------
Q 043235 160 SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--------NLSFVKHIYLQNNAIKGLIPI------------- 218 (515)
Q Consensus 160 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--------~l~~L~~L~L~~n~i~~~~~~------------- 218 (515)
++|++++|.+.......+..+++|++|++++|++..+. .++.|++|++++|.+++..+.
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 99999999887443333456889999999998886531 244555555555544321110
Q ss_pred --------------------------------------------------cccCCCCccEEeccCCccCCcCchhh-hcC
Q 043235 219 --------------------------------------------------ALLRSSTLLTLDLRDNKLFGRIPHQI-NER 247 (515)
Q Consensus 219 --------------------------------------------------~~~~~~~L~~L~Ls~n~i~~~~~~~~-~~l 247 (515)
.+....+|+.|++++|++. .+|..+ ..+
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l 333 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHL 333 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHC
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcC
Confidence 0112356888999999987 556555 578
Q ss_pred CCcCEEEccCccCCCCCC---ccccCCCCCCEEECCCCcCcCCCC--ccccCCcccccccCCCCCcccccCCCCCCcccc
Q 043235 248 SNLHVLLLRGNYLQGRIP---NQLCQLRKLSIMDLSRNRLNGPIP--SCLGNVPFWREATDDDSSEFFYANNVDSPVAYY 322 (515)
Q Consensus 248 ~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~n~i~~~~p--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 322 (515)
++|++|++++|++++..| ..+..+++|++|++++|++++..+ ..+..++.|+.+....+....
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------ 401 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP------------ 401 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC------------
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc------------
Confidence 999999999999987653 346788999999999999975432 345566655554332211000
Q ss_pred CCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccCh
Q 043235 323 NSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIP 402 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 402 (515)
+.. ....+++|++|++++|+++ .++..+ .++|++|++++|++++..
T Consensus 402 -------------------lp~-----------~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~- 447 (549)
T 2z81_A 402 -------------------MPD-----------SCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS- 447 (549)
T ss_dssp -------------------CCS-----------CCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC-
T ss_pred -------------------CCh-----------hhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc-
Confidence 000 0123678999999999998 444433 268999999999998643
Q ss_pred hhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCc
Q 043235 403 ESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 403 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
..+++|++|+|++|+++ .+|. ...+++|++|++++|++++.+|. ...+..++.+++.||++.|+|+
T Consensus 448 ---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 ---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 57899999999999999 6665 46799999999999999998887 5688999999999999999887
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-46 Score=393.64 Aligned_cols=374 Identities=20% Similarity=0.257 Sum_probs=317.1
Q ss_pred CchhHHhcccCCcEEECcCCccccc-----------------CCcccc--CCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 27 LPENLGIIFQKLIYLDMSKNNFEGN-----------------IPYSVG--EMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 27 ~p~~~~~~~~~L~~L~L~~n~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
+|+.+.. +++|++|+|++|.+++. +|..+. ++++|++|++++|.+.+.+|..+ .++++|
T Consensus 198 ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L 275 (636)
T 4eco_A 198 VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEM 275 (636)
T ss_dssp ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSC
T ss_pred CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCC
Confidence 7887776 79999999999999975 899999 99999999999999998899765 789999
Q ss_pred CEEEccCcc-ccc-cCCccccCC------CCCCEEEcccCCCCCcCCh--hhhCCCCCcEEEcccCcCCCCcChhccCCC
Q 043235 88 DWLDLSNNN-FYG-QLFPNYMNL------TDLGSLYLDNNHFSGKMTD--GLLSSTLLRVLNVSNNMLSGDIPHWIGNFS 157 (515)
Q Consensus 88 ~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 157 (515)
++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+..+++|++|++++|.+++.+| .+..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999998 887 788888776 99999999999999 7787 89999999999999999998888 899999
Q ss_pred CccEEEccCccccccccccccCCCC-CcEEeCCCCCCCCcCC------CCcccEEEcccCceeeecccccc-------CC
Q 043235 158 VLSVLLMSENYLQGNIPVQLNNLKS-LEFIDLSENSLISLSN------LSFVKHIYLQNNAIKGLIPIALL-------RS 223 (515)
Q Consensus 158 ~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~l~~------l~~L~~L~L~~n~i~~~~~~~~~-------~~ 223 (515)
+|++|++++|++. .+|..+..+++ |++|++++|++..++. +++|++|++++|.+++..|..+. .+
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 9999999999999 78888999999 9999999999977652 34799999999999998888888 78
Q ss_pred CCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCC-------CCCEEECCCCcCcCCCCccccCCc
Q 043235 224 STLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR-------KLSIMDLSRNRLNGPIPSCLGNVP 296 (515)
Q Consensus 224 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-------~L~~L~L~~n~i~~~~p~~~~~l~ 296 (515)
++|++|++++|++++..+..+..+++|++|+|++|+++...+..+.... +|++|++++|+++ .+|..+..
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-- 509 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-- 509 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST--
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh--
Confidence 8999999999999965555667799999999999999944444444333 9999999999998 45544320
Q ss_pred ccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccc
Q 043235 297 FWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGE 376 (515)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 376 (515)
..+++|++|+|++|++++
T Consensus 510 -------------------------------------------------------------~~l~~L~~L~Ls~N~l~~- 527 (636)
T 4eco_A 510 -------------------------------------------------------------TTLPYLVGIDLSYNSFSK- 527 (636)
T ss_dssp -------------------------------------------------------------TTCTTCCEEECCSSCCSS-
T ss_pred -------------------------------------------------------------ccCCCcCEEECCCCCCCC-
Confidence 126789999999999996
Q ss_pred cccchhccccCCeecc------CCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC
Q 043235 377 IPWKIGQLQNIRALNL------SNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 377 ~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
+|..+..+++|++|+| ++|++.+.+|..+..+++|++|+|++|+++ .+|..+. ++|+.|++++|++...-+
T Consensus 528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 8889999999999999 567888899999999999999999999995 7787766 799999999999876443
Q ss_pred CCc---ccCCCCcccccCCCCCCCCc
Q 043235 451 DKE---QFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 451 ~~~---~~~~l~~~~~~gn~~~c~~~ 473 (515)
... .......+.+......|+|+
T Consensus 605 ~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 605 SYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp TTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred HhcchhhhcccceeecCCccccCCCc
Confidence 311 12333344455555555554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-46 Score=383.53 Aligned_cols=419 Identities=20% Similarity=0.191 Sum_probs=321.6
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
|..+|..-.++|++|++++|.+++..|..+.. +++|++|++++|++++..|.+|.++++|++|++++|+++ .+|..
T Consensus 12 l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 87 (520)
T 2z7x_B 12 LIHVPKDLSQKTTILNISQNYISELWTSDILS-LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-- 87 (520)
T ss_dssp CSSCCCSCCTTCSEEECCSSCCCCCCHHHHTT-CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--
T ss_pred cccccccccccccEEECCCCcccccChhhccc-cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--
Confidence 44566655689999999999998444455554 789999999999999888889999999999999999998 78875
Q ss_pred hCCCCCCEEEccCccccc-cCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCC--cEEEcccCcC--CCCcChhccC-
Q 043235 82 SSCLSLDWLDLSNNNFYG-QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLL--RVLNVSNNML--SGDIPHWIGN- 155 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~- 155 (515)
.+++|++|++++|.+++ ..|..|+++++|++|++++|++++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccc
Confidence 68999999999999986 356889999999999999999875 456677777 9999999988 6666666655
Q ss_pred -------------------------CCCccEEEccCcc-------ccccccccccCCCCCcEEeCCCCCCCCcC------
Q 043235 156 -------------------------FSVLSVLLMSENY-------LQGNIPVQLNNLKSLEFIDLSENSLISLS------ 197 (515)
Q Consensus 156 -------------------------l~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~l~------ 197 (515)
+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+....
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 242 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQ 242 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHH
Confidence 4455555555554 443333 4556666666666666553210
Q ss_pred --CCCcccEEEcccCceeeeccccc-----cCCCCccEEeccCCccCCcCc-hhhhcC---CCcCEEEccCccCCCCCCc
Q 043235 198 --NLSFVKHIYLQNNAIKGLIPIAL-----LRSSTLLTLDLRDNKLFGRIP-HQINER---SNLHVLLLRGNYLQGRIPN 266 (515)
Q Consensus 198 --~l~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~Ls~n~i~~~~~-~~~~~l---~~L~~L~L~~n~i~~~~~~ 266 (515)
..+.|++|++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+....
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-- 318 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-- 318 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--
T ss_pred HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--
Confidence 23578999999999987778777 8888999999999988 344 455444 67999999999887432
Q ss_pred cccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceee
Q 043235 267 QLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKF 346 (515)
Q Consensus 267 ~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (515)
.+..+++|++|++++|++++..|..+..++.|+.+....+..... .
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-------------------------------~--- 364 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-------------------------------S--- 364 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-------------------------------H---
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-------------------------------c---
Confidence 236789999999999999988888888888777644332110000 0
Q ss_pred eccCccccccccccccCCEEEcCCCcCcccccc-chhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccC
Q 043235 347 VTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW-KIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425 (515)
Q Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 425 (515)
........+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+
T Consensus 365 -----~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~i 436 (520)
T 2z7x_B 365 -----KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SI 436 (520)
T ss_dssp -----HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CC
T ss_pred -----cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-cc
Confidence 0000113478999999999999974665 488899999999999999877777664 79999999999999 78
Q ss_pred CccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCccC
Q 043235 426 PPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMIK 475 (515)
Q Consensus 426 ~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~l~ 475 (515)
|..+..+++|++|++++|++++..+. ...+..++.+.+.||++.|.|++.
T Consensus 437 p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCch
Confidence 88888999999999999999954443 567888999999999999998764
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-45 Score=384.44 Aligned_cols=418 Identities=17% Similarity=0.113 Sum_probs=292.3
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
.+..+++|++|++++|.+++..|..+.. +++|++|+|++|.+++..|.+|+++++|++|++++|.++ .++...+.+++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 128 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLI 128 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCC
Confidence 4678999999999999998544555554 899999999999999888999999999999999999998 66655568899
Q ss_pred CCCEEEccCccccc-cCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCc----EEEcccCcCCCCcChh--------
Q 043235 86 SLDWLDLSNNNFYG-QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLR----VLNVSNNMLSGDIPHW-------- 152 (515)
Q Consensus 86 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~-------- 152 (515)
+|++|++++|.+++ ..|..++++++|++|++++|++++..+..+..+++|+ +|++++|.+++..+..
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~ 208 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence 99999999999976 4588899999999999999999877666555444332 4555555544222221
Q ss_pred ------------------------------------------------------------------------ccCCCCcc
Q 043235 153 ------------------------------------------------------------------------IGNFSVLS 160 (515)
Q Consensus 153 ------------------------------------------------------------------------~~~l~~L~ 160 (515)
+..+++|+
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence 23344555
Q ss_pred EEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCC
Q 043235 161 VLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFG 238 (515)
Q Consensus 161 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~ 238 (515)
.|++++|.+. .+| .+..+++|+.|++++|.+..++ .+++|++|++++|...+.. .+..+++|++|++++|++++
T Consensus 289 ~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 289 AMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred EEEecCccch-hhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 5555555554 334 5667777888888887775444 5566666666666443322 45566666666666666654
Q ss_pred c--CchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCC-ccccCCcccccccCCCCCcccccCCC
Q 043235 239 R--IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP-SCLGNVPFWREATDDDSSEFFYANNV 315 (515)
Q Consensus 239 ~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~l~~~~~~~~~~~~~~~~~ 315 (515)
. .+..+..+++|++|++++|.+++ .|..+..+++|++|++++|++.+..| ..+..++.|+.+....+........
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 442 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG- 442 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-
T ss_pred CcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-
Confidence 4 25566666666666666666653 34556666666666666666665555 4555555555544332221110000
Q ss_pred CCCccccCCcccccCccccccccccccceeeeccCcccc----ccccccccCCEEEcCCCcCccccccchhccccCCeec
Q 043235 316 DSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF----FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALN 391 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 391 (515)
. +.....+..-....+.... .....+++|++|++++|++++..|..+..+++|++|+
T Consensus 443 ----~---------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 443 ----I---------------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp ----T---------------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ----h---------------hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 0 0000001111111111110 1123479999999999999988899999999999999
Q ss_pred cCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCC-CCCEEecccCcccccCCC
Q 043235 392 LSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELN-FLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 392 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~ 451 (515)
|++|++++..|..|..+++|++|+|++|+++ .+|..+..++ +|++|++++|++.+..+.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999888999999999999999999999 6777799997 599999999999987775
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=392.65 Aligned_cols=392 Identities=18% Similarity=0.212 Sum_probs=280.5
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEEC-cCCccccc--------------------------------------
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDM-SKNNFEGN-------------------------------------- 51 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L-~~n~i~~~-------------------------------------- 51 (515)
.+++.|+|+++++.|.+|+.++. +++|++|+| ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~-L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGG-CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhc-cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57999999999999999999987 899999999 77765443
Q ss_pred --------------------------------------CCccccCCCCCCEEECcCCcCcc-----------------cC
Q 043235 52 --------------------------------------IPYSVGEMKELTILDLSRNNFTG-----------------KL 76 (515)
Q Consensus 52 --------------------------------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~l 76 (515)
+|..|+++++|++|+|++|.+++ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 56677778888888888888875 27
Q ss_pred chHH-HhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCC-CCC-cCChhhhCCC-------CCcEEEcccCcCC
Q 043235 77 PRPI-VSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH-FSG-KMTDGLLSST-------LLRVLNVSNNMLS 146 (515)
Q Consensus 77 ~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~l~~n~l~ 146 (515)
|..+ |.++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..++ +|++|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 7665 3367888888888887777777778888888888888887 765 5666555444 7888888888887
Q ss_pred CCcCh--hccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC----CCCc-ccEEEcccCceeeecccc
Q 043235 147 GDIPH--WIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS----NLSF-VKHIYLQNNAIKGLIPIA 219 (515)
Q Consensus 147 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~----~l~~-L~~L~L~~n~i~~~~~~~ 219 (515)
.+|. .++++++|+.|++++|.+. .+| .+..+++|+.|++++|++..++ .++. |++|++++|.++. +|..
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~ 637 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNI 637 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CCSC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-Cchh
Confidence 6676 7778888888888888877 566 6777788888888888775444 4566 7888888888773 4566
Q ss_pred ccCCCC--ccEEeccCCccCCcCchh---hh--cCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccc
Q 043235 220 LLRSST--LLTLDLRDNKLFGRIPHQ---IN--ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCL 292 (515)
Q Consensus 220 ~~~~~~--L~~L~Ls~n~i~~~~~~~---~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~ 292 (515)
+..+.. |+.|++++|++.+.+|.. +. .+++|+.|+|++|+++...+..+..+++|+.|++++|+++ .+|..+
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 655543 888888888877655422 12 2347788888888887433333447778888888888776 444332
Q ss_pred cCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCc
Q 043235 293 GNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNE 372 (515)
Q Consensus 293 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 372 (515)
..... .....+++|++|+|++|+
T Consensus 717 ~~~~~---------------------------------------------------------~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 717 LKPKD---------------------------------------------------------GNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SSCTT---------------------------------------------------------SCCTTGGGCCEEECCSSC
T ss_pred hcccc---------------------------------------------------------ccccccCCccEEECCCCC
Confidence 21100 000124577778888887
Q ss_pred Cccccccchh--ccccCCeeccCCccccccChhhhcCccCCCeeeCCC------CcccccCCccccCCCCCCEEecccCc
Q 043235 373 FSGEIPWKIG--QLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSR------NKLSGQIPPQLTELNFLSNFNVSYNN 444 (515)
Q Consensus 373 l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~l~~l~~L~~L~Ls~N~ 444 (515)
++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|+
T Consensus 740 L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 740 LT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred Cc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 77 6666665 77788888888888775 577777778888887765 66777777777778888888888888
Q ss_pred ccccCCCCcccCCCCcccccCCCCC
Q 043235 445 LSGPIPDKEQFATFDDCSYKGNSAL 469 (515)
Q Consensus 445 l~~~~p~~~~~~~l~~~~~~gn~~~ 469 (515)
+ +.+|.. ...+++.+++.+|+..
T Consensus 818 L-~~Ip~~-l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 818 I-RKVDEK-LTPQLYILDIADNPNI 840 (876)
T ss_dssp C-CBCCSC-CCSSSCEEECCSCTTC
T ss_pred C-CccCHh-hcCCCCEEECCCCCCC
Confidence 7 666664 2357777777777754
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=370.86 Aligned_cols=370 Identities=19% Similarity=0.206 Sum_probs=312.8
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-+.++.+++.++ .+|. + .++|++|+|++|.+++..|..|.++++|++|++++|.+.+.++...|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 357899999998 8887 3 5799999999999998889999999999999999999976787777899999999999
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChh--hhCCCCCcEEEcccCcCCCCcChh-ccCCCCccEEEccCccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDG--LLSSTLLRVLNVSNNMLSGDIPHW-IGNFSVLSVLLMSENYL 169 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l 169 (515)
++|.+++..+..|.++++|++|++++|++++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999998755544 889999999999999999887776 89999999999999999
Q ss_pred cccccccccCC--CCCcEEeCCCCCCCCcC-------------CCCcccEEEcccCceeeeccccccCC---CCccEEec
Q 043235 170 QGNIPVQLNNL--KSLEFIDLSENSLISLS-------------NLSFVKHIYLQNNAIKGLIPIALLRS---STLLTLDL 231 (515)
Q Consensus 170 ~~~~~~~l~~l--~~L~~L~L~~n~l~~l~-------------~l~~L~~L~L~~n~i~~~~~~~~~~~---~~L~~L~L 231 (515)
.+..+..+..+ .+|+.|++++|.+..+. .+++|++|++++|.+++..+..+... .+|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 98888877766 78999999999987654 34679999999999988777666543 78999999
Q ss_pred cCCccCCc----------Cchhhhc--CCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccc
Q 043235 232 RDNKLFGR----------IPHQINE--RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299 (515)
Q Consensus 232 s~n~i~~~----------~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~ 299 (515)
++|.+.+. .+..+.. .++|+.|++++|++++..+..+..+++|++|++++|.+++..|..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 321 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----- 321 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----
Confidence 98865432 1122222 358889999999988888888888899999999999887655555433
Q ss_pred cccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcccccc
Q 043235 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW 379 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 379 (515)
+++|++|+|++|.+++..+.
T Consensus 322 ------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 322 ------------------------------------------------------------LTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp ------------------------------------------------------------CTTCCEEECCSSCCCEECGG
T ss_pred ------------------------------------------------------------cccCCEEECCCCccCCcChh
Confidence 56788899999998877788
Q ss_pred chhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCC
Q 043235 380 KIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDK 452 (515)
Q Consensus 380 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 452 (515)
.|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.+|..
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 8888899999999999998888888888999999999999998777777888899999999999999888863
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=380.65 Aligned_cols=448 Identities=19% Similarity=0.158 Sum_probs=301.6
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-+.+|+++++++ .+|..+ .+++++|++++|.+++..+.+|.++++|++|++++|.++ .++...+.++++|++|++
T Consensus 6 ~~~~~cs~~~L~-~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 6 HEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNL 80 (680)
T ss_dssp SSEEECCSSCCS-SCCSCS---CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEEC
T ss_pred CCeeECCCCCcc-cccccc---CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEEC
Confidence 368999999998 899866 479999999999999888888999999999999999999 566666789999999999
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
++|.++...+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..++.+++|++|++++|.+++.
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 99999977666899999999999999999988888999999999999999999988888999999999999999999977
Q ss_pred cccccc--CCCCCcEEeCCCCCCCCcCC--------------------------------CCcccEEEcccCceeeeccc
Q 043235 173 IPVQLN--NLKSLEFIDLSENSLISLSN--------------------------------LSFVKHIYLQNNAIKGLIPI 218 (515)
Q Consensus 173 ~~~~l~--~l~~L~~L~L~~n~l~~l~~--------------------------------l~~L~~L~L~~n~i~~~~~~ 218 (515)
.+..+. .+++|+.|++++|++..+.. .+.|++|++++|.+++..+.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 776554 56889999999998754321 14456666666666666666
Q ss_pred cccCCCC--ccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccC--------------------------
Q 043235 219 ALLRSST--LLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ-------------------------- 270 (515)
Q Consensus 219 ~~~~~~~--L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-------------------------- 270 (515)
.+..++. |++|++++|++++..+..|..+++|++|++++|++++..+..+..
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 6655543 666666666666666666666666666666666666555544444
Q ss_pred -------CCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCc--ccccCC---------CCCCccccCCcccccCcc
Q 043235 271 -------LRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSE--FFYANN---------VDSPVAYYNSSLELQLPV 332 (515)
Q Consensus 271 -------l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~ 332 (515)
+++|++|++++|.+.+..+..+.+++.|+.+....+.. ...... ........ .......+
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~-n~l~~~~~- 398 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK-NKISKIES- 398 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTT-SCCCEECT-
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCC-CCCCeECh-
Confidence 45555555555555555555555555555443322110 000000 00000000 00000000
Q ss_pred ccccccccccceeeeccCcccc----ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCcccc--ccChhhhc
Q 043235 333 ELHFRQDQQVGAKFVTKNRYEF----FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLS--GAIPESFS 406 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~ 406 (515)
..+.....+..-.+..+.... .....+++|++|++++|++.+..+..|..+++|++|++++|.+. +..|..|.
T Consensus 399 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 399 -DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp -TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred -hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 001111111111222222110 11123556666666666666555556666666666666666654 34666777
Q ss_pred CccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC---------CCcccCCCCcccccCCCC
Q 043235 407 NLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP---------DKEQFATFDDCSYKGNSA 468 (515)
Q Consensus 407 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p---------~~~~~~~l~~~~~~gn~~ 468 (515)
.+++|++|++++|++++..+..|.++++|++|++++|++++..+ ....+..++.+.+.+|..
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 77777888888887776666677777788888888887775421 134556677777777654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=380.36 Aligned_cols=400 Identities=18% Similarity=0.162 Sum_probs=324.9
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
.+..+++|++|++++|+++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+..++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccc
Confidence 4678999999999999998 454443444899999999999999888899999999999999999998 77765568899
Q ss_pred CCCEEEccCccccc-cCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCC----cEEEcccCcCCCCcC----------
Q 043235 86 SLDWLDLSNNNFYG-QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLL----RVLNVSNNMLSGDIP---------- 150 (515)
Q Consensus 86 ~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~---------- 150 (515)
+|++|++++|.+++ ..|..|.++++|++|++++|++++..+..+..+++| +++++++|.+++..+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 99999999999986 358889999999999999999987777777777777 777877776654433
Q ss_pred -----------------------------------------------------------------------hhccCCCCc
Q 043235 151 -----------------------------------------------------------------------HWIGNFSVL 159 (515)
Q Consensus 151 -----------------------------------------------------------------------~~~~~l~~L 159 (515)
..+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 333445667
Q ss_pred cEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 160 SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 160 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
++|++++|.+. .+|..+..+ +|+.|++++|.+..++ .++.|++|++++|.+.+..+. ..+++|++|++++|+++
T Consensus 285 ~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 285 SSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp SEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCB
T ss_pred cEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccC
Confidence 77777777776 456666666 7788888888776655 567788888888887766544 67899999999999998
Q ss_pred CcC--chhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCC-ccccCCcccccccCCCCCcccccCC
Q 043235 238 GRI--PHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP-SCLGNVPFWREATDDDSSEFFYANN 314 (515)
Q Consensus 238 ~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~l~~~~~~~~~~~~~~~~ 314 (515)
+.. +..+..+++|++|++++|++.+..+. +..+++|++|++++|.+.+..+ ..+..++.|+.+....+......
T Consensus 361 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 437 (570)
T 2z63_A 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-- 437 (570)
T ss_dssp EEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC--
T ss_pred ccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc--
Confidence 654 77889999999999999999865444 8999999999999999987766 46777777766443322110000
Q ss_pred CCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCc-cccccchhccccCCeeccC
Q 043235 315 VDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFS-GEIPWKIGQLQNIRALNLS 393 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls 393 (515)
......+++|++|++++|.++ +.+|..+..+++|++|+++
T Consensus 438 ---------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 438 ---------------------------------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp ---------------------------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred ---------------------------------------hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 001134789999999999998 5788899999999999999
Q ss_pred CccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCc
Q 043235 394 NNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKE 453 (515)
Q Consensus 394 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 453 (515)
+|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|...
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 999998889999999999999999999998888889999999999999999999998743
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=376.10 Aligned_cols=447 Identities=19% Similarity=0.133 Sum_probs=309.1
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
|.++|..-.+++++|||++|+|+ .+|...+..+++|++|+|++|.|+++.+.+|.++++|++|+|++|+++ .+|...|
T Consensus 43 l~~vP~~lp~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f 120 (635)
T 4g8a_A 43 FYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAF 120 (635)
T ss_dssp CSSCCSSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGG
T ss_pred cCccCCCCCcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHh
Confidence 45677666678999999999998 666554445899999999999999888888999999999999999998 7888888
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCc-CChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc-
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL- 159 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L- 159 (515)
.++++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+.++
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 9999999999999999887777899999999999999998753 56778889999999999999987767666544332
Q ss_pred ---cEEEccCccccccccccc------------------------cCCCCCc----------------------------
Q 043235 160 ---SVLLMSENYLQGNIPVQL------------------------NNLKSLE---------------------------- 184 (515)
Q Consensus 160 ---~~L~l~~n~l~~~~~~~l------------------------~~l~~L~---------------------------- 184 (515)
..++++.|.+....+..+ ..+..++
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence 345666665543222211 1111111
Q ss_pred -----------------------------EEeCCCCCCC---CcCCCCcccEEEcccCceeeeccccccCCCCccEEecc
Q 043235 185 -----------------------------FIDLSENSLI---SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232 (515)
Q Consensus 185 -----------------------------~L~L~~n~l~---~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls 232 (515)
.+++.++.+. .+.....++.|++.+|.+....+. .+..|+.+++.
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~ 357 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFT 357 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEE
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc---cchhhhhcccc
Confidence 1111111111 111233466677777666554332 34567777777
Q ss_pred CCccCCcCchhhhcCCCcCEEEccCccCCC--CCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCccc
Q 043235 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQG--RIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFF 310 (515)
Q Consensus 233 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~ 310 (515)
+|.+... .....+++|+.|++++|.+.. ..+..+..+.+|+++++..|.+.. .+..+..++.++...........
T Consensus 358 ~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 358 SNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp SCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEES
T ss_pred cccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccc
Confidence 7766432 233456777777777776642 234455566677777777776643 33344445544443322111110
Q ss_pred ccCCCCCCccccCCcccccCccccccccccccceeeeccCccc---cccccccccCCEEEcCCCcCc-cccccchhcccc
Q 043235 311 YANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYE---FFIGSNLNYMAGLDLSGNEFS-GEIPWKIGQLQN 386 (515)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 386 (515)
..... .+.............+... ......++.++.|+|++|.+. +..|..|..+++
T Consensus 435 ~~~~~-------------------~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~ 495 (635)
T 4g8a_A 435 MSEFS-------------------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 495 (635)
T ss_dssp TTSSC-------------------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccc-------------------ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence 00000 0000000111111111111 011234789999999999754 457888999999
Q ss_pred CCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCC-ccc-CCCCccccc
Q 043235 387 IRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDK-EQF-ATFDDCSYK 464 (515)
Q Consensus 387 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~-~~l~~~~~~ 464 (515)
|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..|.. ..+ .+++.+.+.
T Consensus 496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 999999999999999999999999999999999999888999999999999999999999998873 334 689999999
Q ss_pred CCCCCCCCccC
Q 043235 465 GNSALCGSMIK 475 (515)
Q Consensus 465 gn~~~c~~~l~ 475 (515)
||||.|+|.+.
T Consensus 576 ~Np~~C~C~~~ 586 (635)
T 4g8a_A 576 QNDFACTCEHQ 586 (635)
T ss_dssp TCCBCCSGGGH
T ss_pred CCCCcccCCcH
Confidence 99999999754
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=385.76 Aligned_cols=372 Identities=17% Similarity=0.216 Sum_probs=308.6
Q ss_pred CchhHHhcccCCcEEECcCCcccc-----------------cCCcccc--CCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 27 LPENLGIIFQKLIYLDMSKNNFEG-----------------NIPYSVG--EMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 27 ~p~~~~~~~~~L~~L~L~~n~i~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
+|..+.. +++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..+ .++++|
T Consensus 440 IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPEL 517 (876)
T ss_dssp ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSC
T ss_pred hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCC
Confidence 7887776 7999999999999997 3888887 99999999999999888899665 789999
Q ss_pred CEEEccCcc-ccc-cCCccccCCC-------CCCEEEcccCCCCCcCCh--hhhCCCCCcEEEcccCcCCCCcChhccCC
Q 043235 88 DWLDLSNNN-FYG-QLFPNYMNLT-------DLGSLYLDNNHFSGKMTD--GLLSSTLLRVLNVSNNMLSGDIPHWIGNF 156 (515)
Q Consensus 88 ~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 156 (515)
++|++++|+ +++ .+|..+++++ +|++|++++|+++ .+|. .+..+++|++|++++|.++ .+| .++.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 999999998 887 6777666554 9999999999999 7787 8999999999999999999 778 89999
Q ss_pred CCccEEEccCccccccccccccCCCC-CcEEeCCCCCCCCcCC----C--CcccEEEcccCceeeeccccc---c--CCC
Q 043235 157 SVLSVLLMSENYLQGNIPVQLNNLKS-LEFIDLSENSLISLSN----L--SFVKHIYLQNNAIKGLIPIAL---L--RSS 224 (515)
Q Consensus 157 ~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~l~~----l--~~L~~L~L~~n~i~~~~~~~~---~--~~~ 224 (515)
++|+.|++++|.+. .+|..+..+++ |+.|++++|++..++. . +.|+.|++++|.+.+.+|... . .++
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 99999999999999 78888999999 9999999999976652 2 349999999999988655322 2 345
Q ss_pred CccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccC-C-------CCCCEEECCCCcCcCCCCccccCCc
Q 043235 225 TLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ-L-------RKLSIMDLSRNRLNGPIPSCLGNVP 296 (515)
Q Consensus 225 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l-------~~L~~L~L~~n~i~~~~p~~~~~l~ 296 (515)
+|+.|++++|+++...+..+..+++|+.|+|++|+++ .+|..+.. . ++|++|+|++|+++ .+|..+..
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~-- 749 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA-- 749 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh--
Confidence 8999999999998544444558999999999999999 45544333 2 39999999999997 55554320
Q ss_pred ccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccc
Q 043235 297 FWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGE 376 (515)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 376 (515)
..+++|+.|+|++|++++
T Consensus 750 -------------------------------------------------------------~~l~~L~~L~Ls~N~L~~- 767 (876)
T 4ecn_A 750 -------------------------------------------------------------TTLPYLSNMDVSYNCFSS- 767 (876)
T ss_dssp -------------------------------------------------------------TTCTTCCEEECCSSCCSS-
T ss_pred -------------------------------------------------------------ccCCCcCEEEeCCCCCCc-
Confidence 127889999999999996
Q ss_pred cccchhccccCCeeccCC------ccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC
Q 043235 377 IPWKIGQLQNIRALNLSN------NLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 377 ~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
+|..+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++...-+
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 788899999999999976 788889999999999999999999999 57888766 699999999999987655
Q ss_pred CC-cccCCCCcccccCCCCCC--CCc
Q 043235 451 DK-EQFATFDDCSYKGNSALC--GSM 473 (515)
Q Consensus 451 ~~-~~~~~l~~~~~~gn~~~c--~~~ 473 (515)
.. ..........+.+|+..+ +|+
T Consensus 845 ~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 845 TSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp GGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred HHccccccchheeecCCCccccCCCC
Confidence 42 122233444556665544 654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=384.41 Aligned_cols=450 Identities=19% Similarity=0.154 Sum_probs=349.8
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
+..|.++++++ .+|. + +++|++|+|++|.|++..+.+|.++++|++|+|++|...+.++...|.++++|++|+|+
T Consensus 7 ~~~dcs~~~L~-~vP~-l---p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ-V---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCCS-S---CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCCC-C---CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 57899999999 8897 3 68999999999999988899999999999999999966658877777999999999999
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChh--hhCCCCCcEEEcccCcCCCCcC-hhccCCCCccEEEccCcccc
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDG--LLSSTLLRVLNVSNNMLSGDIP-HWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 170 (515)
+|.+++..|..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..+ ..|+++++|++|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 99999988999999999999999999999766654 8999999999999999987655 57999999999999999999
Q ss_pred ccccccccCC--CCCcEEeCCCCCCCCcC-----CCC------cccEEEcccCceeeecccccc----------------
Q 043235 171 GNIPVQLNNL--KSLEFIDLSENSLISLS-----NLS------FVKHIYLQNNAIKGLIPIALL---------------- 221 (515)
Q Consensus 171 ~~~~~~l~~l--~~L~~L~L~~n~l~~l~-----~l~------~L~~L~L~~n~i~~~~~~~~~---------------- 221 (515)
+..+..+..+ ++|+.|++++|.+.... .++ .|+.|++++|.+++..+..+.
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 8888888877 89999999999885422 222 399999999977654433222
Q ss_pred --------------------C--CCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEEC
Q 043235 222 --------------------R--SSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDL 279 (515)
Q Consensus 222 --------------------~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 279 (515)
+ .++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 1 268999999999999888999999999999999999999888999999999999999
Q ss_pred CCCcCcCCCCccccCCcccccccCCCCCcccccCC-------CCCCccccCCcccccCc-----ccccccccccc-----
Q 043235 280 SRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANN-------VDSPVAYYNSSLELQLP-----VELHFRQDQQV----- 342 (515)
Q Consensus 280 ~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----- 342 (515)
++|.+++..|..+..++.|+.+....+........ ........+........ ..+..+....+
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~ 401 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL 401 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCT
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccc
Confidence 99999988899999999988876554322111110 00000000000000000 00001111100
Q ss_pred --ceeeeccCccccc----cccccccCCEEEcCCCcCcccccc-chhccccCCeeccCCcccc-----ccChhhhcCccC
Q 043235 343 --GAKFVTKNRYEFF----IGSNLNYMAGLDLSGNEFSGEIPW-KIGQLQNIRALNLSNNLLS-----GAIPESFSNLKM 410 (515)
Q Consensus 343 --~~~~~~~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~ 410 (515)
.......+..... ....+++|++|+|++|++++..+. .+..+++|++|+|++|.++ +..+..|.++++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence 0001111111111 112578899999999999855433 3566889999999999987 344567889999
Q ss_pred CCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCCCC
Q 043235 411 IESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSAL 469 (515)
Q Consensus 411 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~ 469 (515)
|++|+|++|++++..|..|..+++|+.|+|++|++++..|.... .+++.+++.+|...
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLL 539 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCC
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCC
Confidence 99999999999999999999999999999999999987665433 78888888887654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-43 Score=365.26 Aligned_cols=409 Identities=18% Similarity=0.196 Sum_probs=274.0
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
+...+++|+++|+++ .+|..+ +++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...|.++++|++
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCE
Confidence 444577888888877 677655 367788888888887666677788888888888888777 554455577778888
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCc-CChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc--cEEEccC
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL--SVLLMSE 166 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~ 166 (515)
|++++|+++. +|.. .+++|++|++++|++++. .|..|..+++|++|++++|.++.. .+..+++| ++|++++
T Consensus 105 L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 8888887774 3333 677788888888877753 346777778888888888777643 33444444 7777777
Q ss_pred ccc--cccccccccC--------------------------CCCCcEEeCCCCCC---------CCcCC-----------
Q 043235 167 NYL--QGNIPVQLNN--------------------------LKSLEFIDLSENSL---------ISLSN----------- 198 (515)
Q Consensus 167 n~l--~~~~~~~l~~--------------------------l~~L~~L~L~~n~l---------~~l~~----------- 198 (515)
|.+ .+..|..+.. +++|+.+++++|+. ..+..
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 777 5555544443 44566666666531 00111
Q ss_pred ----------------CCcccEEEcccCceeeeccccc-----cCCCCccEEeccCCccCCcCc-hhhhc---CCCcCEE
Q 043235 199 ----------------LSFVKHIYLQNNAIKGLIPIAL-----LRSSTLLTLDLRDNKLFGRIP-HQINE---RSNLHVL 253 (515)
Q Consensus 199 ----------------l~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~Ls~n~i~~~~~-~~~~~---l~~L~~L 253 (515)
.++|++|++++|.+++.+|..+ ..++.|+.++++.+.+ .+| .++.. ..+|+.|
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence 1256666666666665555444 4444444444444444 122 12211 2457777
Q ss_pred EccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccc
Q 043235 254 LLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVE 333 (515)
Q Consensus 254 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (515)
++++|.+.... ....+++|++|++++|++++..|..+..++.|+.+....+......
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------- 393 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--------------------- 393 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT---------------------
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc---------------------
Confidence 77777765322 1256778888888888888777777777776665433211100000
Q ss_pred cccccccccceeeeccCccccccccccccCCEEEcCCCcCcccccc-chhccccCCeeccCCccccccChhhhcCccCCC
Q 043235 334 LHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW-KIGQLQNIRALNLSNNLLSGAIPESFSNLKMIE 412 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 412 (515)
........+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+. ++|+
T Consensus 394 ------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~ 453 (562)
T 3a79_B 394 ------------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVK 453 (562)
T ss_dssp ------------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS
T ss_pred ------------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCC
Confidence 0000113478999999999999974554 588899999999999999877666554 7999
Q ss_pred eeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCccC
Q 043235 413 SLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMIK 475 (515)
Q Consensus 413 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~l~ 475 (515)
+|+|++|+++ .+|..+..+++|++|++++|++++..+. ...+..++.+.+.|||+.|+|++.
T Consensus 454 ~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 9999999999 6777777999999999999999954444 567888999999999999998653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=348.69 Aligned_cols=366 Identities=20% Similarity=0.244 Sum_probs=313.0
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccc-cCCccccCCCCCCEEEc
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYG-QLFPNYMNLTDLGSLYL 116 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L 116 (515)
-+.++.+++.++ .+|. + .++|++|+|++|.++ .++...+.++++|++|++++|.+.+ ..+..|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 457888899888 5665 3 378999999999999 5555556899999999999999874 44667999999999999
Q ss_pred ccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChh--ccCCCCccEEEccCcccccccccc-ccCCCCCcEEeCCCCCC
Q 043235 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHW--IGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFIDLSENSL 193 (515)
Q Consensus 117 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l 193 (515)
++|++++..|..|..+++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|++
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999998755544 899999999999999999887766 88999999999999998
Q ss_pred CCcC-----C--CCcccEEEcccCceeeecccc--------ccCCCCccEEeccCCccCCcCchhhhcC---CCcCEEEc
Q 043235 194 ISLS-----N--LSFVKHIYLQNNAIKGLIPIA--------LLRSSTLLTLDLRDNKLFGRIPHQINER---SNLHVLLL 255 (515)
Q Consensus 194 ~~l~-----~--l~~L~~L~L~~n~i~~~~~~~--------~~~~~~L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L 255 (515)
..+. . ...++.|++++|.+.+..+.. +..+++|++|++++|++++..+..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 6553 2 267899999999998875543 3356889999999999998888777654 89999999
Q ss_pred cCccCCCCC----------Ccccc--CCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccC
Q 043235 256 RGNYLQGRI----------PNQLC--QLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYN 323 (515)
Q Consensus 256 ~~n~i~~~~----------~~~~~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (515)
++|.+.+.. +..+. ..++|++|++++|.+.+..|..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------------- 297 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH----------------------------- 297 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-----------------------------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-----------------------------
Confidence 998665321 12222 2368999999999998766665543
Q ss_pred CcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChh
Q 043235 324 SSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPE 403 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 403 (515)
+++|++|+|++|++.+..+..|..+++|++|+|++|++++..+.
T Consensus 298 ------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 298 ------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp ------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred ------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 67899999999999988898999999999999999999988899
Q ss_pred hhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-CcccCCCCcccccCCCCCCCCc
Q 043235 404 SFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 404 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
.|..+++|++|+|++|++++..|..+..+++|++|++++|++++..+. ...+.+++.+.+.+|++.|.|+
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999999988899999999999999999999986665 4678899999999999999987
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-42 Score=357.48 Aligned_cols=371 Identities=20% Similarity=0.228 Sum_probs=278.0
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.+++++|++++|.+++..|..+.. +++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|..
T Consensus 43 L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 118 (562)
T 3a79_B 43 LTHVPKDLPPRTKALSLSQNSISELRMPDISF-LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-- 118 (562)
T ss_dssp CCSCCTTSCTTCCEEECCSSCCCCCCGGGTTT-CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--
T ss_pred CccCCCCCCCCcCEEECCCCCccccChhhhcc-CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--
Confidence 45677666789999999999999444455554 899999999999999888999999999999999999999 88875
Q ss_pred hCCCCCCEEEccCccccccC-CccccCCCCCCEEEcccCCCCCcCChhhhCCCCC--cEEEcccCcC--CCCcChhccCC
Q 043235 82 SSCLSLDWLDLSNNNFYGQL-FPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLL--RVLNVSNNML--SGDIPHWIGNF 156 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~l 156 (515)
.+++|++|++++|++++.. |..|+++++|++|++++|+++.. .+..+++| ++|++++|.+ ++..|..+..+
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccccccc
Confidence 7999999999999998743 57899999999999999999864 34445555 9999999998 66666655543
Q ss_pred C--------------------------CccEEE-----------------------------------------------
Q 043235 157 S--------------------------VLSVLL----------------------------------------------- 163 (515)
Q Consensus 157 ~--------------------------~L~~L~----------------------------------------------- 163 (515)
. +|+.++
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 2 334444
Q ss_pred --------ccCccccccccccc-----cCCCCCcEEeCCCCCCCCcC--------CCCcccEEEcccCceeeeccccccC
Q 043235 164 --------MSENYLQGNIPVQL-----NNLKSLEFIDLSENSLISLS--------NLSFVKHIYLQNNAIKGLIPIALLR 222 (515)
Q Consensus 164 --------l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~l~--------~l~~L~~L~L~~n~i~~~~~~~~~~ 222 (515)
+++|.+.+.+|..+ ..++.|+.++++.+.+ .++ ....|++|++++|.+.... ....
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~ 351 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPS 351 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSS
T ss_pred cccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccC
Confidence 44444443344333 3333333333333333 111 1134677777777665432 1256
Q ss_pred CCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCC--CccccCCCCCCEEECCCCcCcCCCCccccCCccccc
Q 043235 223 SSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRI--PNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWRE 300 (515)
Q Consensus 223 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~ 300 (515)
+++|++|++++|++++..|..+..+++|+.|++++|++++.. |..+..+++|++|++++|++++.+|....
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------- 424 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC------- 424 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-------
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-------
Confidence 677888888888887777777777888888888888777532 35577778888888888877754443210
Q ss_pred ccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccc
Q 043235 301 ATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWK 380 (515)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 380 (515)
..+++|++|++++|++++..|..
T Consensus 425 ---------------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 425 ---------------------------------------------------------AWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp ---------------------------------------------------------CCCTTCCEEECCSSCCCGGGGSS
T ss_pred ---------------------------------------------------------cCcccCCEEECCCCCCCcchhhh
Confidence 22678999999999998777665
Q ss_pred hhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCcc-ccCCCCCCEEecccCcccccCCC
Q 043235 381 IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQ-LTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 381 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
+. ++|++|+|++|+++ .+|..+..+++|++|+|++|+++. +|.. +..+++|+.|++++|++.+..|.
T Consensus 448 l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 54 79999999999999 677767799999999999999994 5554 99999999999999999987764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=358.45 Aligned_cols=392 Identities=19% Similarity=0.186 Sum_probs=298.9
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcc-cCchHHHhCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTG-KLPRPIVSSC 84 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~l~~~~~~~l 84 (515)
.+..+++|++|++++|++++..|..+.. +++|++|++++|.+++..+..|+++++|++|++++|.+++ ..|. .+..+
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l 122 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNL 122 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTC
T ss_pred hhhcCCcccEEECCCCCcCccChhhccc-cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhcc
Confidence 3578899999999999998555555655 7899999999999998777779999999999999999983 1233 45789
Q ss_pred CCCCEEEccCcc-ccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChh-ccCCCCccEE
Q 043235 85 LSLDWLDLSNNN-FYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHW-IGNFSVLSVL 162 (515)
Q Consensus 85 ~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L 162 (515)
++|++|++++|. +....+..+.++++|++|++++|++++..|..+..+++|++|++++|.+.. .|.+ +..+++|++|
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYL 201 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEE
Confidence 999999999998 444444678999999999999999998888888888888888887777763 3333 3456777777
Q ss_pred EccCccccccc--c-----------------------------ccccCCCCCcEEeCCCCCC------------------
Q 043235 163 LMSENYLQGNI--P-----------------------------VQLNNLKSLEFIDLSENSL------------------ 193 (515)
Q Consensus 163 ~l~~n~l~~~~--~-----------------------------~~l~~l~~L~~L~L~~n~l------------------ 193 (515)
++++|++.+.. + ..+..+++|+.+++++|.+
T Consensus 202 ~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (549)
T 2z81_A 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281 (549)
T ss_dssp EEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT
T ss_pred EccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhc
Confidence 77777766431 1 1112223333444333332
Q ss_pred ------------CCcC----------CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCch---hhhcCC
Q 043235 194 ------------ISLS----------NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPH---QINERS 248 (515)
Q Consensus 194 ------------~~l~----------~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~---~~~~l~ 248 (515)
+... ....|++|++++|.++.+....+..+++|++|++++|++++..|. .+..++
T Consensus 282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361 (549)
T ss_dssp TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred ccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence 2110 125688999999999865444446799999999999999876643 367889
Q ss_pred CcCEEEccCccCCCCCC--ccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcc
Q 043235 249 NLHVLLLRGNYLQGRIP--NQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSL 326 (515)
Q Consensus 249 ~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (515)
+|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..++.|+.+....+.
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~------------------- 421 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG------------------- 421 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC-------------------
T ss_pred cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC-------------------
Confidence 99999999999986532 45889999999999999998 677777777666654332211
Q ss_pred cccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhc
Q 043235 327 ELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFS 406 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 406 (515)
...+.+...++|++|++++|++++.. ..+++|++|+|++|+++ .+|. ..
T Consensus 422 -------------------------l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 422 -------------------------IRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp -------------------------CSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred -------------------------cccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cc
Confidence 11111122468999999999998643 57899999999999998 5665 46
Q ss_pred CccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC
Q 043235 407 NLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 407 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
.+++|++|+|++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 799999999999999998888999999999999999999998874
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=354.28 Aligned_cols=417 Identities=18% Similarity=0.180 Sum_probs=282.8
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
++||+++|+++ .+|..++ ++|++|++++|.+++..|.+|.++++|++|++++|+++ .++...|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecC
Confidence 68999999999 8998764 79999999999999887889999999999999999999 5655556899999999999
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCC-cCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc--cEEEccCccc-
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSG-KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL--SVLLMSENYL- 169 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l- 169 (515)
+|+++. +|.. .+++|++|++++|++++ ..|..+..+++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 78 ~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 999985 4444 89999999999999987 467899999999999999999985 457777788 9999999999
Q ss_pred -cccccccccCCC-CCcEEeCCCCCCCC------cCCCCcccEEEcccCc-------eeeeccccccCCCCccEEeccCC
Q 043235 170 -QGNIPVQLNNLK-SLEFIDLSENSLIS------LSNLSFVKHIYLQNNA-------IKGLIPIALLRSSTLLTLDLRDN 234 (515)
Q Consensus 170 -~~~~~~~l~~l~-~L~~L~L~~n~l~~------l~~l~~L~~L~L~~n~-------i~~~~~~~~~~~~~L~~L~Ls~n 234 (515)
.+..|..+..+. +...+++++|.+.. +..++.|+.+++++|. +.+.++ .+..+++|+.|++++|
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence 667777766654 23345666666532 2245666777776665 444443 5556666666666666
Q ss_pred ccCCcCchhhh---cCCCcCEEEccCccCCCCCCccc-----cCCCCCCEEECCCCcCcCCCC-ccccCC---ccccccc
Q 043235 235 KLFGRIPHQIN---ERSNLHVLLLRGNYLQGRIPNQL-----CQLRKLSIMDLSRNRLNGPIP-SCLGNV---PFWREAT 302 (515)
Q Consensus 235 ~i~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~p-~~~~~l---~~l~~~~ 302 (515)
.+.+..+..+. ..++|++|++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ ..++.+.
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 55432221111 13456666666666665555555 5555555666655555 233 111111 1111111
Q ss_pred CCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc---ccccccccCCEEEcCCCcCcc--cc
Q 043235 303 DDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF---FIGSNLNYMAGLDLSGNEFSG--EI 377 (515)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~--~~ 377 (515)
...+..... .+. .....+..-....+.... .....+++|++|++++|++++ .+
T Consensus 309 l~~n~l~~~-------~~~---------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 309 VSGTRMVHM-------LCP---------------SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp EESSCCCCC-------CCC---------------SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred cCCCccccc-------cch---------------hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 110000000 000 000000000000010000 011347788889999988886 45
Q ss_pred ccchhccccCCeeccCCccccccChh-hhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC-Cccc
Q 043235 378 PWKIGQLQNIRALNLSNNLLSGAIPE-SFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD-KEQF 455 (515)
Q Consensus 378 ~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~ 455 (515)
|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|. ...+
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l 443 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKL 443 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGC
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcC
Confidence 56788888899999999988874554 477888899999999988877776654 68899999999988 5555 5578
Q ss_pred CCCCcccccCCCCC
Q 043235 456 ATFDDCSYKGNSAL 469 (515)
Q Consensus 456 ~~l~~~~~~gn~~~ 469 (515)
..++.+.+.+|...
T Consensus 444 ~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 444 EALQELNVASNQLK 457 (520)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCC
Confidence 88888888888654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=329.79 Aligned_cols=345 Identities=24% Similarity=0.322 Sum_probs=279.8
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
..+++++.|+++++.+. .+|. +.. +++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~~-~~~-l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L 114 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SIDG-VEY-LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNL 114 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred hHhccccEEecCCCCCc-cCcc-hhh-hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCC
Confidence 34678899999999887 6775 443 7899999999999885443 888999999999999988 5665 6789999
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCc
Q 043235 88 DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167 (515)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (515)
++|++++|.+++.. .+.++++|++|++++|.+.+. ..+..+++|++|+++ |.+.... .+..+++|++|++++|
T Consensus 115 ~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 115 TGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSN 187 (466)
T ss_dssp CEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCC
Confidence 99999999887643 388899999999999988753 347888999999986 4555332 3888899999999999
Q ss_pred cccccccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhh
Q 043235 168 YLQGNIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244 (515)
Q Consensus 168 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 244 (515)
.+.+. ..+..+++|++|++++|.+..+. .+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +
T Consensus 188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 188 KVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred cCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 88754 34788899999999999886553 678899999999988875 357788899999999998876544 7
Q ss_pred hcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCC
Q 043235 245 NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNS 324 (515)
Q Consensus 245 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (515)
..+++|+.|++++|++++..+ +..+++|++|++++|++.+..+ +
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~-------------------------------- 305 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I-------------------------------- 305 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G--------------------------------
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h--------------------------------
Confidence 888899999999998885433 7788899999999998864322 1
Q ss_pred cccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhh
Q 043235 325 SLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPES 404 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 404 (515)
..+++|++|++++|++++..| +..+++|++|++++|++++. ..
T Consensus 306 ---------------------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 306 ---------------------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp ---------------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred ---------------------------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 237789999999999987655 78899999999999999865 46
Q ss_pred hcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCccccc
Q 043235 405 FSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGP 448 (515)
Q Consensus 405 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 448 (515)
+..+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 8899999999999999997766 88999999999999999874
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=335.82 Aligned_cols=317 Identities=21% Similarity=0.201 Sum_probs=233.3
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 117 (515)
-+.++.+++.++ .+|..+. +++++|+|++|.++ .++...|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 357888888887 5666553 57888999999888 5655556888889999999888888778888888889999998
Q ss_pred cCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC
Q 043235 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS 197 (515)
Q Consensus 118 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~ 197 (515)
+|+++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++..+.
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 88888766677888888889999888888777788888888888888888888777778888888888888888776543
Q ss_pred -----CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCC
Q 043235 198 -----NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR 272 (515)
Q Consensus 198 -----~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 272 (515)
.+++|+.|++++|.+.+..+..|..+++|++|++++|...+.++.......+|+.|++++|++++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 566777777777777777666777777777777777766655555555555777777777777754445666777
Q ss_pred CCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcc
Q 043235 273 KLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRY 352 (515)
Q Consensus 273 ~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (515)
+|++|++++|++++..+..+..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~---------------------------------------------------------- 270 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHE---------------------------------------------------------- 270 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTT----------------------------------------------------------
T ss_pred ccCeeECCCCcCCccChhhccc----------------------------------------------------------
Confidence 7777777777765433333221
Q ss_pred ccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccc
Q 043235 353 EFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSG 423 (515)
Q Consensus 353 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 423 (515)
+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++.+
T Consensus 271 -------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 271 -------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp -------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred -------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 4556667777777766666666666777777777777666666666666677777777776653
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=323.78 Aligned_cols=355 Identities=25% Similarity=0.312 Sum_probs=301.7
Q ss_pred cCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCcccc
Q 043235 19 SSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFY 98 (515)
Q Consensus 19 s~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~ 98 (515)
..+.+.+.++..- ++++++|+++++.+.. +| .+..+++|++|++++|.++ .++. +..+++|++|++++|.++
T Consensus 32 ~~~~~~~~i~~~~---l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~ 103 (466)
T 1o6v_A 32 GKTNVTDTVSQTD---LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIA 103 (466)
T ss_dssp TCSSTTSEECHHH---HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred cccccccccChhH---hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccc
Confidence 3344444444322 5789999999999984 55 4889999999999999998 6776 689999999999999998
Q ss_pred ccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccccccccc
Q 043235 99 GQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN 178 (515)
Q Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 178 (515)
+..+ +.++++|++|++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+.. .+.
T Consensus 104 ~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~ 174 (466)
T 1o6v_A 104 DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLA 174 (466)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGT
T ss_pred cChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhc
Confidence 6544 9999999999999999986533 89999999999999999853 3 48999999999997 4555332 388
Q ss_pred CCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEc
Q 043235 179 NLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLL 255 (515)
Q Consensus 179 ~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 255 (515)
.+++|+.|++++|.+..+. .+++|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|+.|++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred cCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence 9999999999999986654 77899999999999998765 77789999999999999754 46889999999999
Q ss_pred cCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccc
Q 043235 256 RGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELH 335 (515)
Q Consensus 256 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
++|.+++..+ +..+++|++|++++|.+++..+ +
T Consensus 251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~------------------------------------------- 283 (466)
T 1o6v_A 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--L------------------------------------------- 283 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G-------------------------------------------
T ss_pred CCCccccchh--hhcCCCCCEEECCCCccCcccc--c-------------------------------------------
Confidence 9999986544 8899999999999999875322 1
Q ss_pred cccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeee
Q 043235 336 FRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLD 415 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 415 (515)
..+++|++|++++|++.+..+ +..+++|++|++++|++++..| +..+++|++|+
T Consensus 284 ----------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 284 ----------------------AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp ----------------------TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred ----------------------cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 226789999999999996544 8899999999999999997766 78999999999
Q ss_pred CCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCCCCC
Q 043235 416 LSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALC 470 (515)
Q Consensus 416 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~c 470 (515)
+++|++++. ..+..+++|+.|++++|++++..| ...+..++.+.+.+|++..
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 999999965 578999999999999999999888 6778889999999998766
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=336.87 Aligned_cols=402 Identities=17% Similarity=0.141 Sum_probs=301.0
Q ss_pred CCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhC
Q 043235 4 RLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSS 83 (515)
Q Consensus 4 ~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~ 83 (515)
.-.+..+++|++|||++|+|+ .+|+..+..+++|++|+|++|++++..+.+|.++++|++|+|++|+++ .++...|++
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~ 146 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGH 146 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTT
T ss_pred HHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhc
Confidence 345788999999999999999 666665555899999999999999877788999999999999999999 788877899
Q ss_pred CCCCCEEEccCcccccc-CCccccCCCCCCEEEcccCCCCCcCChhhhCCCCC----cEEEcccCcCCCCcChhcc----
Q 043235 84 CLSLDWLDLSNNNFYGQ-LFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLL----RVLNVSNNMLSGDIPHWIG---- 154 (515)
Q Consensus 84 l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~---- 154 (515)
+++|++|++++|.++.. .+..+..+++|++|++++|++++..+..+..+.++ ..++++.|.++...+..+.
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 99999999999999754 46778999999999999999987777766544332 3455555554422111111
Q ss_pred --------------------C---------------------------------------------------------CC
Q 043235 155 --------------------N---------------------------------------------------------FS 157 (515)
Q Consensus 155 --------------------~---------------------------------------------------------l~ 157 (515)
. +.
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence 1 11
Q ss_pred CccEEEccCccccccccccccCCCCCcEEeCCCCCCC---------------------C---cCCCCcccEEEcccCcee
Q 043235 158 VLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI---------------------S---LSNLSFVKHIYLQNNAIK 213 (515)
Q Consensus 158 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---------------------~---l~~l~~L~~L~L~~n~i~ 213 (515)
+++.+.+.++.+... ..+.....++.|++.+|.+. . ...++.|+.+++++|.+.
T Consensus 307 ~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 384 (635)
T 4g8a_A 307 NVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 384 (635)
T ss_dssp TCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCB
T ss_pred ccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccc
Confidence 222222222222211 12333445556655555432 1 124677899999999875
Q ss_pred e--eccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCC-ccccCCCCCCEEECCCCcCcCCCCc
Q 043235 214 G--LIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIP-NQLCQLRKLSIMDLSRNRLNGPIPS 290 (515)
Q Consensus 214 ~--~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~p~ 290 (515)
. ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.+++..|......+ ..+..+++++.++++.|.+.+..+.
T Consensus 385 ~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~ 463 (635)
T 4g8a_A 385 FKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463 (635)
T ss_dssp EEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred cccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence 4 345566778899999999998864 45567788999999998887665443 5677889999999999999888787
Q ss_pred cccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCC
Q 043235 291 CLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSG 370 (515)
Q Consensus 291 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 370 (515)
.+..++.++.+....+..... ...-....+++|++|+|++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~----------------------------------------~~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQEN----------------------------------------FLPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGG----------------------------------------EECSCCTTCTTCCEEECTT
T ss_pred ccccchhhhhhhhhhcccccc----------------------------------------cCchhhhhccccCEEECCC
Confidence 777766665533221110000 0000113478999999999
Q ss_pred CcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCC-CCCCEEecccCcccccC
Q 043235 371 NEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTEL-NFLSNFNVSYNNLSGPI 449 (515)
Q Consensus 371 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~ 449 (515)
|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|||++|+|++..|..+..+ ++|++|+|++|+++...
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999998 68999999999998765
Q ss_pred C
Q 043235 450 P 450 (515)
Q Consensus 450 p 450 (515)
.
T Consensus 584 ~ 584 (635)
T 4g8a_A 584 E 584 (635)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=317.55 Aligned_cols=332 Identities=20% Similarity=0.202 Sum_probs=186.2
Q ss_pred CCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEE
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLN 139 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 139 (515)
+++++|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 44455555555444 44444444445555555555554444444444555555555555555444444444455555555
Q ss_pred cccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeecc
Q 043235 140 VSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLIP 217 (515)
Q Consensus 140 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~ 217 (515)
+++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++..+. .++.|++|++++|.+++.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~-- 201 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL-- 201 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE--
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc--
Confidence 5555554333333444555555555555554444444445555555555555544332 444555555555554432
Q ss_pred ccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcc
Q 043235 218 IALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPF 297 (515)
Q Consensus 218 ~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~ 297 (515)
...++|++|++++|.+... +.. ..++|+.|++++|++++. ..+..+++|++|++++|.+.+..|..+..
T Consensus 202 ---~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--- 270 (390)
T 3o6n_A 202 ---AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK--- 270 (390)
T ss_dssp ---ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT---
T ss_pred ---CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc---
Confidence 1223555555555555432 211 234566666666666532 35556666666666666665443433322
Q ss_pred cccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcccc
Q 043235 298 WREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEI 377 (515)
Q Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 377 (515)
+++|++|+|++|++++ +
T Consensus 271 --------------------------------------------------------------l~~L~~L~L~~n~l~~-~ 287 (390)
T 3o6n_A 271 --------------------------------------------------------------MQRLERLYISNNRLVA-L 287 (390)
T ss_dssp --------------------------------------------------------------CSSCCEEECCSSCCCE-E
T ss_pred --------------------------------------------------------------cccCCEEECCCCcCcc-c
Confidence 4556666666666663 4
Q ss_pred ccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCC
Q 043235 378 PWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFAT 457 (515)
Q Consensus 378 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 457 (515)
+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++.. + +..+++|+.|++++|++.+... ...+..
T Consensus 288 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~ 362 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRN 362 (390)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTT
T ss_pred CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHH
Confidence 445566778888888888887 5566677788888888888888744 3 6777888889999998876422 234566
Q ss_pred CCcccccCCCCCCCCc
Q 043235 458 FDDCSYKGNSALCGSM 473 (515)
Q Consensus 458 l~~~~~~gn~~~c~~~ 473 (515)
+....+.+++..|.++
T Consensus 363 ~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 363 VARPAVDDADQHCKID 378 (390)
T ss_dssp CCTTTBCCCCSCCCTT
T ss_pred HHhhcccccCceeccc
Confidence 6666778888888653
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=325.85 Aligned_cols=348 Identities=18% Similarity=0.161 Sum_probs=278.8
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-+.++.++++++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|+|++|.++ .++...|.++++|++|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence 357888888887 788765 468888999988888777888888888999999988888 554455678888999999
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
++|+++...+..|.++++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 88888876666788888899999998888877788888888899999988888877777888888899999988888876
Q ss_pred ccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcC
Q 043235 173 IPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER 247 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l 247 (515)
.+..+..+++|+.|++++|.+.. +..+++|++|++++|...+.++.......+|++|++++|++++..+..+..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 66778888889999998888854 3467888999999888766666666666789999999999986666788899
Q ss_pred CCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCccc
Q 043235 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLE 327 (515)
Q Consensus 248 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (515)
++|+.|+|++|++++..+..|..+++|++|++++|++++..|..+..
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------------------- 294 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG--------------------------------- 294 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT---------------------------------
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC---------------------------------
Confidence 99999999999999888888999999999999999998766655433
Q ss_pred ccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcC
Q 043235 328 LQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSN 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 407 (515)
+++|++|+|++|++++..+..|..+++|++|+|++|.+...-+ ...-
T Consensus 295 --------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~-~~~~ 341 (477)
T 2id5_A 295 --------------------------------LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR-LLWV 341 (477)
T ss_dssp --------------------------------CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG-GHHH
T ss_pred --------------------------------cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc-hHhH
Confidence 6788889999999997777778889999999999999874322 1112
Q ss_pred ccCCCeeeCCCCcccccCCccccC
Q 043235 408 LKMIESLDLSRNKLSGQIPPQLTE 431 (515)
Q Consensus 408 l~~L~~L~Ls~N~l~~~~~~~l~~ 431 (515)
......+.+.++......|..+.+
T Consensus 342 ~~~~~~~~~~~~~~~C~~p~~~~g 365 (477)
T 2id5_A 342 FRRRWRLNFNRQQPTCATPEFVQG 365 (477)
T ss_dssp HTTTTSSCCTTCCCBEEESGGGTT
T ss_pred HhhhhccccCccCceeCCchHHcC
Confidence 233445666777666666665554
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=320.82 Aligned_cols=346 Identities=15% Similarity=0.125 Sum_probs=262.8
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
...+++|++|++++|.++ .+| .+.. +++|++|++++|.+++. | ++.+++|++|++++|.++ .++ +..+++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~-~~~-~l~~-l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~---~~~l~~ 107 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSIT-DMT-GIEK-LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD---VTPLTK 107 (457)
T ss_dssp HHHHTTCCEEECCSSCCC-CCT-TGGG-CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---CTTCTT
T ss_pred hhHcCCCCEEEccCCCcc-cCh-hhcc-cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---cCCCCc
Confidence 345788999999999988 456 4554 78899999999998864 3 888899999999999988 565 577889
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|++|++++|++++. + ++.+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 99999999988763 2 78888999999999998864 2678888999999998554444 477888899999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhh
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 244 (515)
|++++ +| +..+++|+.|++++|++..+. .++.|++|++++|+++++ | +..+++|++|++++|++++..+..+
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCHHHC
Confidence 98886 34 778888999999999886554 778888999999988884 4 7788889999999998887654443
Q ss_pred hcCC-------CcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCC
Q 043235 245 NERS-------NLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDS 317 (515)
Q Consensus 245 ~~l~-------~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 317 (515)
..++ +|+.|++++|.+.+.+| +..+++|+.|++++|+..+.+|.....+..+
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L------------------- 312 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL------------------- 312 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC-------------------
T ss_pred CCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe-------------------
Confidence 3332 33444444444443333 3566778888888887665555322221111
Q ss_pred CccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccc
Q 043235 318 PVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLL 397 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 397 (515)
....+++|++|++++|++++. + +..+++|+.|++++|++
T Consensus 313 --------------------------------------~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 313 --------------------------------------DLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp --------------------------------------CCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCC
T ss_pred --------------------------------------chhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCC
Confidence 012367899999999999974 3 88899999999999999
Q ss_pred cccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCC
Q 043235 398 SGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 398 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
++ ++.|+.|++++|.+.+. ..+..|..+++++|+++|.+|.
T Consensus 352 ~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 352 QD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 85 35677889999999875 3556788899999999999997
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=326.99 Aligned_cols=332 Identities=20% Similarity=0.210 Sum_probs=210.0
Q ss_pred CCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEE
Q 043235 59 MKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVL 138 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 138 (515)
+.+++.|++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345555666655555 5555555555566666666665555555555556666666666666555555555555666666
Q ss_pred EcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeec
Q 043235 139 NVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLI 216 (515)
Q Consensus 139 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~ 216 (515)
++++|.++...+..|+.+++|++|++++|.+.+..|..|..+++|+.|++++|.+..+. .++.|+.|++++|.+++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l- 207 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL- 207 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE-
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc-
Confidence 66666655444444555566666666666665555555555666666666666554433 455566666666655543
Q ss_pred cccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCc
Q 043235 217 PIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVP 296 (515)
Q Consensus 217 ~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~ 296 (515)
....+|+.|++++|.+....+. + .++|+.|+|++|.+++ +..+..+++|++|++++|.+.+..|..+..
T Consensus 208 ----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-- 276 (597)
T 3oja_B 208 ----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK-- 276 (597)
T ss_dssp ----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT--
T ss_pred ----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC--
Confidence 2234566666666666533221 1 2466777777777664 255666777777777777776555544432
Q ss_pred ccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccc
Q 043235 297 FWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGE 376 (515)
Q Consensus 297 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 376 (515)
+++|++|+|++|.+++
T Consensus 277 ---------------------------------------------------------------l~~L~~L~Ls~N~l~~- 292 (597)
T 3oja_B 277 ---------------------------------------------------------------MQRLERLYISNNRLVA- 292 (597)
T ss_dssp ---------------------------------------------------------------CSSCCEEECTTSCCCE-
T ss_pred ---------------------------------------------------------------ccCCCEEECCCCCCCC-
Confidence 4566777777777774
Q ss_pred cccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccC
Q 043235 377 IPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFA 456 (515)
Q Consensus 377 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 456 (515)
+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|++++. + +..+++|+.|++++|++.+..+ ...+.
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~ 367 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFR 367 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTT
T ss_pred CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH-HHHHH
Confidence 4555667788888888888888 5677788888888888888888754 2 6677889999999999887632 23456
Q ss_pred CCCcccccCCCCCCCC
Q 043235 457 TFDDCSYKGNSALCGS 472 (515)
Q Consensus 457 ~l~~~~~~gn~~~c~~ 472 (515)
.+....+.+++..|+.
T Consensus 368 ~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 368 NVARPAVDDADQHCKI 383 (597)
T ss_dssp TCCTTTBCCCCCCCCT
T ss_pred HHhhhccccccccCCc
Confidence 6667778889988876
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=316.02 Aligned_cols=389 Identities=25% Similarity=0.300 Sum_probs=228.0
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCC-------------CEEECcCCcCccc
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKEL-------------TILDLSRNNFTGK 75 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~ 75 (515)
+.+.|++|++++|.+ +.+|+.++. +++|++|++++|.+.+..|..++++++| ++|++++|.++ .
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~-L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred ccccchhhhcccCch-hhCChhHhc-ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence 467899999999999 599999877 7999999999999998999999988764 99999999988 6
Q ss_pred CchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccC
Q 043235 76 LPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGN 155 (515)
Q Consensus 76 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 155 (515)
+|. ..++|++|++++|.+++ +|.. +++|++|++++|++++. +.. .++|++|++++|.+++ +| .++.
T Consensus 86 lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 86 LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 765 24789999999999886 4433 37888888888888743 221 2678888888888885 56 4888
Q ss_pred CCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCc---CCCCcccEEEcccCceeeeccccccCCCCccEEecc
Q 043235 156 FSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL---SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232 (515)
Q Consensus 156 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l---~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls 232 (515)
+++|++|++++|++++ +|.. ..+|++|++++|++..+ ..+++|++|++++|.++++ |.. .++|++|+++
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAG 223 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECC
T ss_pred CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECc
Confidence 8888888888888885 4443 35888888888887554 3677788888888888764 322 2478888888
Q ss_pred CCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCccccc
Q 043235 233 DNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYA 312 (515)
Q Consensus 233 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 312 (515)
+|++. .+| .+..+++|++|++++|++++ +|.. +++|++|++++|++++ +|..+. .++.+....+......
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~~---~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELPQ---SLTFLDVSENIFSGLS 293 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCCT---TCCEEECCSSCCSEES
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcccC---cCCEEECcCCccCccc
Confidence 88887 455 47788888888888888874 4432 3778888888888875 444332 2332222211100000
Q ss_pred CCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeecc
Q 043235 313 NNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNL 392 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 392 (515)
. .+ ..+..-....+....+. ...++|++|++++|++++ +|.. +++|++|++
T Consensus 294 ~----------------~~--------~~L~~L~l~~N~l~~i~-~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L 344 (454)
T 1jl5_A 294 E----------------LP--------PNLYYLNASSNEIRSLC-DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIA 344 (454)
T ss_dssp C----------------CC--------TTCCEEECCSSCCSEEC-CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred C----------------cC--------CcCCEEECcCCcCCccc-CCcCcCCEEECCCCcccc-cccc---CCcCCEEEC
Confidence 0 00 00000111111111111 113578888888888885 5543 578888888
Q ss_pred CCccccccChhhhcCccCCCeeeCCCCcccc--cCCccccCC-------------CCCCEEecccCcccc--cCCCCccc
Q 043235 393 SNNLLSGAIPESFSNLKMIESLDLSRNKLSG--QIPPQLTEL-------------NFLSNFNVSYNNLSG--PIPDKEQF 455 (515)
Q Consensus 393 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l-------------~~L~~L~Ls~N~l~~--~~p~~~~~ 455 (515)
++|+++ .+|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|
T Consensus 345 ~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP----- 415 (454)
T 1jl5_A 345 SFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP----- 415 (454)
T ss_dssp CSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------
T ss_pred CCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch-----
Confidence 888888 4554 46888888888888887 677777777 778888888888887 555
Q ss_pred CCCCcccccCCCCCC
Q 043235 456 ATFDDCSYKGNSALC 470 (515)
Q Consensus 456 ~~l~~~~~~gn~~~c 470 (515)
.++..+.+.+|...|
T Consensus 416 ~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 416 ESVEDLRMNSERVVD 430 (454)
T ss_dssp ---------------
T ss_pred hhHhheeCcCcccCC
Confidence 334555555554433
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-37 Score=303.54 Aligned_cols=311 Identities=19% Similarity=0.161 Sum_probs=253.3
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
++++++|++++|.++...+..|.++++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 567888888888887555555677888888888888887 5665556778888888888888877777777888888888
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
++++|+++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 8888888755555567788888888888888877777788888888888888888754 2556788889999999888
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 274 (515)
.+...+.|++|++++|.+...... ..++|++|++++|++++. ..+..+++|++|++++|++++..|..+..+++|
T Consensus 200 ~~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 200 TLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp EEECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred ccCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 888888899999999999876432 347899999999999754 578999999999999999998889999999999
Q ss_pred CEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc
Q 043235 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354 (515)
Q Consensus 275 ~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
++|++++|++++. |..+
T Consensus 275 ~~L~L~~n~l~~~-~~~~-------------------------------------------------------------- 291 (390)
T 3o6n_A 275 ERLYISNNRLVAL-NLYG-------------------------------------------------------------- 291 (390)
T ss_dssp CEEECCSSCCCEE-ECSS--------------------------------------------------------------
T ss_pred CEEECCCCcCccc-Cccc--------------------------------------------------------------
Confidence 9999999998642 2111
Q ss_pred ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCccccc
Q 043235 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424 (515)
Q Consensus 355 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 424 (515)
..+++|++|++++|++. .+|..+..+++|++|++++|+++.. + +..+++|+.|++++|++.+.
T Consensus 292 ---~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 292 ---QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ---SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ---CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 12678999999999999 6677789999999999999999854 3 77889999999999999864
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=304.16 Aligned_cols=343 Identities=20% Similarity=0.187 Sum_probs=254.8
Q ss_pred CCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccc
Q 043235 26 KLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY 105 (515)
Q Consensus 26 ~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 105 (515)
..+..+.. +++|++|++++|.+++. | .+..+++|++|++++|.++ .+| +..+++|++|++++|.+++. .+
T Consensus 33 ~~~~~~~~-l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~---~~ 102 (457)
T 3bz5_A 33 TDTISEEQ-LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL---DV 102 (457)
T ss_dssp TSEEEHHH-HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC---CC
T ss_pred ccccChhH-cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee---ec
Confidence 44445555 78999999999999864 5 6889999999999999998 565 57889999999999999864 28
Q ss_pred cCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcE
Q 043235 106 MNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185 (515)
Q Consensus 106 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 185 (515)
+++++|++|++++|++++. + +..+++|++|++++|.+++. + ++.+++|++|++++|...+.+ .+..+++|+.
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 8899999999999999864 3 78889999999999999864 3 788899999999999655444 4778889999
Q ss_pred EeCCCCCCCCcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCC
Q 043235 186 IDLSENSLISLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGR 263 (515)
Q Consensus 186 L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 263 (515)
|++++|++..++ .++.|++|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++.
T Consensus 175 L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 175 LDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp EECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred EECCCCccceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 999999887654 677888889988888876 37788888889998888886 44 77888888888888888865
Q ss_pred CCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccc
Q 043235 264 IPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVG 343 (515)
Q Consensus 264 ~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
. +..+++|+.|++++|.+....... ...
T Consensus 249 ~---~~~l~~L~~L~l~~n~L~~L~l~~---n~~---------------------------------------------- 276 (457)
T 3bz5_A 249 D---VSTLSKLTTLHCIQTDLLEIDLTH---NTQ---------------------------------------------- 276 (457)
T ss_dssp C---CTTCTTCCEEECTTCCCSCCCCTT---CTT----------------------------------------------
T ss_pred C---HHHCCCCCEEeccCCCCCEEECCC---Ccc----------------------------------------------
Confidence 3 355677888887777664211000 000
Q ss_pred eeeeccCccccccccccccCCEEEcCCCcCccccccc--------hhccccCCeeccCCccccccChhhhcCccCCCeee
Q 043235 344 AKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWK--------IGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLD 415 (515)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 415 (515)
...++...+++|+.|++++|...+.+|.. +.++++|++|++++|++++. + +..+++|+.|+
T Consensus 277 --------~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~ 345 (457)
T 3bz5_A 277 --------LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLS 345 (457)
T ss_dssp --------CCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred --------CCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEE
Confidence 00001123677888888888766555532 45567788888888888864 2 77788888888
Q ss_pred CCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccCCC
Q 043235 416 LSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNS 467 (515)
Q Consensus 416 Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~gn~ 467 (515)
+++|++++ ++.|..|++++|.++|. ..+..+..+.+..|.
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~ 385 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNS 385 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTB
T ss_pred CCCCCCCC--------ccccccccccCCcEEec----ceeeecCccccccCc
Confidence 88888874 24566667888888776 234455555555554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-36 Score=291.70 Aligned_cols=304 Identities=22% Similarity=0.335 Sum_probs=199.3
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+++|++|++++|.+.. .+ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. +.+.++++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4566666666666663 33 3666666666666666666 4554 45666666666666666542 346666666666
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
++++|.+.+..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~----- 185 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN----- 185 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT-----
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc-----
Confidence 666666653322 556666666666666444222 235556666666666665553322 4444555555544
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 274 (515)
+|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|
T Consensus 186 --------------~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L 245 (347)
T 4fmz_A 186 --------------YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL 245 (347)
T ss_dssp --------------TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred --------------CCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence 444444322 5667778888888887765433 6777888888888888874433 7778888
Q ss_pred CEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc
Q 043235 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354 (515)
Q Consensus 275 ~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
++|++++|.+++. ..+
T Consensus 246 ~~L~l~~n~l~~~--~~~-------------------------------------------------------------- 261 (347)
T 4fmz_A 246 TWLEIGTNQISDI--NAV-------------------------------------------------------------- 261 (347)
T ss_dssp CEEECCSSCCCCC--GGG--------------------------------------------------------------
T ss_pred CEEECCCCccCCC--hhH--------------------------------------------------------------
Confidence 8888888877532 111
Q ss_pred ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCC
Q 043235 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNF 434 (515)
Q Consensus 355 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 434 (515)
..+++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|++++|++++..| +..+++
T Consensus 262 ---~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 334 (347)
T 4fmz_A 262 ---KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334 (347)
T ss_dssp ---TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTT
T ss_pred ---hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhc
Confidence 1266788888888888753 357788888888888888888888888888888888888888886555 788888
Q ss_pred CCEEecccCccc
Q 043235 435 LSNFNVSYNNLS 446 (515)
Q Consensus 435 L~~L~Ls~N~l~ 446 (515)
|++|++++|+++
T Consensus 335 L~~L~l~~N~i~ 346 (347)
T 4fmz_A 335 MDSADFANQVIK 346 (347)
T ss_dssp CSEESSSCC---
T ss_pred cceeehhhhccc
Confidence 888888888875
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=289.84 Aligned_cols=306 Identities=24% Similarity=0.338 Sum_probs=246.2
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
..+++|++|+++++.+. .++. +.. +++|++|++++|.+++. +. +.++++|++|++++|.++ .++. +..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~-~~~-~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG-IEY-LTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT-GGG-CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred hhcccccEEEEeCCccc-cchh-hhh-cCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-CchH--HcCCCcC
Confidence 46889999999999998 6775 444 89999999999999954 43 999999999999999998 6764 6899999
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCc
Q 043235 88 DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167 (515)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (515)
++|++++|.+++..+ +..+++|++|++++|..... +..+..+++|++|++++|.+....+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999999986433 88999999999999976644 4458999999999999999986544 889999999999999
Q ss_pred cccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcC
Q 043235 168 YLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINER 247 (515)
Q Consensus 168 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l 247 (515)
.+.+..+ +..+++|+.+++++|.+.. ..+ +..+++|++|++++|++++..+ +..+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~-------------------~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l 242 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITD-------------------ITP--VANMTRLNSLKIGNNKITDLSP--LANL 242 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCC-------------------CGG--GGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred ccccccc--ccCCCccceeecccCCCCC-------------------Cch--hhcCCcCCEEEccCCccCCCcc--hhcC
Confidence 9985433 6677777777777665543 222 5566778888888888765433 7778
Q ss_pred CCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCccc
Q 043235 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLE 327 (515)
Q Consensus 248 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (515)
++|++|++++|.+++. ..+..+++|++|++++|.+++. + .+
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~----------------------------------- 283 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VL----------------------------------- 283 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GG-----------------------------------
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hh-----------------------------------
Confidence 8888888888888753 4677888899999988887642 1 11
Q ss_pred ccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcC
Q 043235 328 LQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSN 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 407 (515)
..+++|++|++++|.+++..+..+..+++|++|++++|++++..| +..
T Consensus 284 ------------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 284 ------------------------------NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp ------------------------------GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred ------------------------------cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 236788899999999988888889999999999999999986666 888
Q ss_pred ccCCCeeeCCCCccc
Q 043235 408 LKMIESLDLSRNKLS 422 (515)
Q Consensus 408 l~~L~~L~Ls~N~l~ 422 (515)
+++|++|++++|.|+
T Consensus 332 l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEESSSCC---
T ss_pred hhccceeehhhhccc
Confidence 999999999999886
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=311.20 Aligned_cols=311 Identities=19% Similarity=0.157 Sum_probs=258.4
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+.+++.+++++|.+....+..|.++++|++|+|++|.++ .++...|..+++|++|++++|.+++..+..|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 567888888888888666666788888888888888887 5555556788888888888888887777778888888888
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
++++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 88888888666666788888888888888888777778888888888888888888542 456788899999999988
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 274 (515)
.+...+.|+.|++++|.+....+.. .++|+.|++++|.+++ +.++..+++|+.|+|++|.+++..|..|..+++|
T Consensus 206 ~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 206 TLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp EEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 8888888999999999988765433 3689999999999976 4778999999999999999999889999999999
Q ss_pred CEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc
Q 043235 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354 (515)
Q Consensus 275 ~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
++|+|++|.+++. |..+
T Consensus 281 ~~L~Ls~N~l~~l-~~~~-------------------------------------------------------------- 297 (597)
T 3oja_B 281 ERLYISNNRLVAL-NLYG-------------------------------------------------------------- 297 (597)
T ss_dssp CEEECTTSCCCEE-ECSS--------------------------------------------------------------
T ss_pred CEEECCCCCCCCC-Cccc--------------------------------------------------------------
Confidence 9999999998742 2211
Q ss_pred ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCccccc
Q 043235 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQ 424 (515)
Q Consensus 355 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 424 (515)
..+++|+.|+|++|.++ .+|..+..+++|++|+|++|++++.. +..+++|+.|+|++|++.+.
T Consensus 298 ---~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 298 ---QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ---SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred ---ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 12678999999999999 67888899999999999999998553 67789999999999999864
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=288.78 Aligned_cols=259 Identities=35% Similarity=0.575 Sum_probs=210.3
Q ss_pred CCCcEEEcccCcCCC--CcChhccCCCCccEEEccC-ccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEccc
Q 043235 133 TLLRVLNVSNNMLSG--DIPHWIGNFSVLSVLLMSE-NYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQN 209 (515)
Q Consensus 133 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~ 209 (515)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++ |++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~-------------------L~Ls~ 110 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY-------------------LYITH 110 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSE-------------------EEEEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCE-------------------EECcC
Confidence 456666777766665 5666666677777777763 6666666666555554444 44444
Q ss_pred CceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCC-CCCEEECCCCcCcCCC
Q 043235 210 NAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR-KLSIMDLSRNRLNGPI 288 (515)
Q Consensus 210 n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~ 288 (515)
|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++..
T Consensus 111 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 555666677777788888888888888877888888888888888888888878888888887 8899999999887766
Q ss_pred CccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEc
Q 043235 289 PSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDL 368 (515)
Q Consensus 289 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 368 (515)
|..+.. +. |++|++
T Consensus 191 ~~~~~~-----------------------------------------------------------------l~-L~~L~L 204 (313)
T 1ogq_A 191 PPTFAN-----------------------------------------------------------------LN-LAFVDL 204 (313)
T ss_dssp CGGGGG-----------------------------------------------------------------CC-CSEEEC
T ss_pred ChHHhC-----------------------------------------------------------------Cc-ccEEEC
Confidence 665432 33 888999
Q ss_pred CCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCccccc
Q 043235 369 SGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGP 448 (515)
Q Consensus 369 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 448 (515)
++|.+++..|..+..+++|++|+|++|++++..|. +..+++|++|+|++|++++.+|..+..+++|++|++++|++++.
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 99999988888999999999999999999866665 88899999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCcccccCCCCCCCCccCCCC
Q 043235 449 IPDKEQFATFDDCSYKGNSALCGSMIKRKC 478 (515)
Q Consensus 449 ~p~~~~~~~l~~~~~~gn~~~c~~~l~~~~ 478 (515)
+|....+.+++.+.+.||+++||.|+. .|
T Consensus 284 ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 284 IPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 999988999999999999999998886 46
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=287.84 Aligned_cols=343 Identities=27% Similarity=0.331 Sum_probs=217.3
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLD 91 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 91 (515)
++++|++++|.++ .+|. .+++|++|++++|.+++ +|.. +++|++|++++|+++ .++. ..++|++|+
T Consensus 72 ~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~ 137 (454)
T 1jl5_A 72 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG 137 (454)
T ss_dssp TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred CCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEE
Confidence 3588888888887 5665 14688888888888885 5543 478888888888887 5553 126888888
Q ss_pred ccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 92 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
+++|.+++ +| .++++++|++|++++|++++ +|.. ..+|++|++++|.+++ +| .++.+++|++|++++|++++
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 88888875 44 58888888888888888875 4443 3578888888888885 45 57888888888888888875
Q ss_pred cccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERS 248 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~ 248 (515)
+|.. .++|++|++++|.+..++ .+++|++|++++|+++++ |. ..++|++|++++|++++ +|.. .+
T Consensus 210 -l~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 210 -LPDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred -CCCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cC
Confidence 3432 257888888888875543 677788888888888764 32 23678888888888875 3432 36
Q ss_pred CcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccc
Q 043235 249 NLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLEL 328 (515)
Q Consensus 249 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (515)
+|+.|++++|++++. +. ..++|++|++++|++++ ++.... .++.+...
T Consensus 278 ~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~~~~---~L~~L~Ls------------------------ 325 (454)
T 1jl5_A 278 SLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCDLPP---SLEELNVS------------------------ 325 (454)
T ss_dssp TCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECCCCT---TCCEEECC------------------------
T ss_pred cCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccCCcC---cCCEEECC------------------------
Confidence 788888888888752 21 12678888888888764 111111 12211111
Q ss_pred cCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccc--cChhhhc
Q 043235 329 QLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG--AIPESFS 406 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~ 406 (515)
.+....+. ..+++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+.
T Consensus 326 --------------------~N~l~~lp-~~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 326 --------------------NNKLIELP-ALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE 380 (454)
T ss_dssp --------------------SSCCSCCC-CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred --------------------CCcccccc-ccCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence 00000000 12578999999999999 5665 47899999999999998 6788888
Q ss_pred Cc-------------cCCCeeeCCCCcccc--cCCccccCCCCCCEEecccCcccccCCC
Q 043235 407 NL-------------KMIESLDLSRNKLSG--QIPPQLTELNFLSNFNVSYNNLSGPIPD 451 (515)
Q Consensus 407 ~l-------------~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 451 (515)
.+ ++|++|++++|++++ .+|. +++.|.+++|.+.+.+|.
T Consensus 381 ~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 381 DLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp EEECCC------------------------------------------------------
T ss_pred hhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCcccc
Confidence 88 889999999999996 4553 466778899998887664
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-38 Score=319.09 Aligned_cols=377 Identities=19% Similarity=0.151 Sum_probs=252.9
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccc----cCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEG----NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
+++|++||+++|++++.....++..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 45789999999999854445545558999999999999884 34677888999999999999998545556666676
Q ss_pred ----CCCEEEccCccccc----cCCccccCCCCCCEEEcccCCCCCcCChhhh-----CCCCCcEEEcccCcCCCCc---
Q 043235 86 ----SLDWLDLSNNNFYG----QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL-----SSTLLRVLNVSNNMLSGDI--- 149 (515)
Q Consensus 86 ----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~--- 149 (515)
+|++|++++|.++. ..+..+..+++|++|++++|.+....+..+. ..++|++|++++|.++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999984 4477888999999999999998754444333 2567999999999988643
Q ss_pred -ChhccCCCCccEEEccCcccccccccccc-----CCCCCcEEeCCCCCCCCc-----C----CCCcccEEEcccCceee
Q 043235 150 -PHWIGNFSVLSVLLMSENYLQGNIPVQLN-----NLKSLEFIDLSENSLISL-----S----NLSFVKHIYLQNNAIKG 214 (515)
Q Consensus 150 -~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~l-----~----~l~~L~~L~L~~n~i~~ 214 (515)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+... . .++.|++|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 55667788999999999998765444443 356888888888887652 1 45677777777777665
Q ss_pred ec-----cccccCCCCccEEeccCCccCCc----CchhhhcCCCcCEEEccCccCCCCCCccccC-----CCCCCEEECC
Q 043235 215 LI-----PIALLRSSTLLTLDLRDNKLFGR----IPHQINERSNLHVLLLRGNYLQGRIPNQLCQ-----LRKLSIMDLS 280 (515)
Q Consensus 215 ~~-----~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~ 280 (515)
.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 32 22223466777777777777643 4555666777777777777765433333322 2567777777
Q ss_pred CCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccccccccc
Q 043235 281 RNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNL 360 (515)
Q Consensus 281 ~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 360 (515)
+|.+++.....+.. ....+
T Consensus 322 ~n~l~~~~~~~l~~-------------------------------------------------------------~l~~~ 340 (461)
T 1z7x_W 322 SCSFTAACCSHFSS-------------------------------------------------------------VLAQN 340 (461)
T ss_dssp TSCCBGGGHHHHHH-------------------------------------------------------------HHHHC
T ss_pred CCCCchHHHHHHHH-------------------------------------------------------------HHhhC
Confidence 77665321110000 00124
Q ss_pred ccCCEEEcCCCcCccccccchhc-----cccCCeeccCCccccc----cChhhhcCccCCCeeeCCCCcccccCCccc--
Q 043235 361 NYMAGLDLSGNEFSGEIPWKIGQ-----LQNIRALNLSNNLLSG----AIPESFSNLKMIESLDLSRNKLSGQIPPQL-- 429 (515)
Q Consensus 361 ~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-- 429 (515)
++|++|++++|.+++..+..+.. .++|++|+|++|++++ .++..+..+++|++|++++|++++.....+
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH
Confidence 56777777777776554444432 4567777777777764 456666667777777777777664311111
Q ss_pred ---cCCCCCCEEecccCcccc
Q 043235 430 ---TELNFLSNFNVSYNNLSG 447 (515)
Q Consensus 430 ---~~l~~L~~L~Ls~N~l~~ 447 (515)
.....|+.|++.++.+..
T Consensus 421 ~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 421 SVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHTSTTCCCCEEECTTCCCCH
T ss_pred HhccCCcchhheeecccccCH
Confidence 112345666655555443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=278.33 Aligned_cols=247 Identities=23% Similarity=0.278 Sum_probs=173.0
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEc
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYL 116 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 116 (515)
++++++++++.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|++++..+..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777777777776 4555442 57777777777776 555444567777777777777777666677777777777777
Q ss_pred ccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc--cccccccCCCCCcEEeCCCCCCC
Q 043235 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG--NIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 117 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
++|+++. +|..+. ++|++|++++|.++...+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|++.
T Consensus 110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 7777763 343332 677778888777776666667777788888888877753 455666666 7777777777776
Q ss_pred CcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCC
Q 043235 195 SLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR 272 (515)
Q Consensus 195 ~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 272 (515)
.++ ..+.|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..++
T Consensus 186 ~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence 654 2356777777777777776677777777777777777777666667777777777777777777 5666677777
Q ss_pred CCCEEECCCCcCcCCCCccc
Q 043235 273 KLSIMDLSRNRLNGPIPSCL 292 (515)
Q Consensus 273 ~L~~L~L~~n~i~~~~p~~~ 292 (515)
+|++|++++|++++..+..+
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSS
T ss_pred cCCEEECCCCCCCccChhHc
Confidence 77777777777765444443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=272.52 Aligned_cols=248 Identities=19% Similarity=0.250 Sum_probs=159.6
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEc
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYL 116 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 116 (515)
++++++++++.++ .+|..+. +++++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4555555555554 3343332 35555555555555 444433455555555555555555544555555555555555
Q ss_pred ccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc--cccccccCCCCCcEEeCCCCCCC
Q 043235 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG--NIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 117 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
++|+++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 5555552 232222 456666666666665555556666666666666666642 44555666667777777777665
Q ss_pred CcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCC
Q 043235 195 SLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR 272 (515)
Q Consensus 195 ~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 272 (515)
.++ ..+.|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..++
T Consensus 185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 263 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263 (330)
T ss_dssp SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS
T ss_pred cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC
Confidence 554 2356778888888888877788888888888888888888777777888888888888888888 6677788888
Q ss_pred CCCEEECCCCcCcCCCCccc
Q 043235 273 KLSIMDLSRNRLNGPIPSCL 292 (515)
Q Consensus 273 ~L~~L~L~~n~i~~~~p~~~ 292 (515)
+|++|++++|++++..+..+
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSS
T ss_pred CcCEEECCCCcCCccChhhc
Confidence 88888888888876554444
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=274.68 Aligned_cols=291 Identities=22% Similarity=0.263 Sum_probs=212.9
Q ss_pred CCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEE
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLN 139 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 139 (515)
.+++.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|+
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 36899999999998 888765 46899999999999988788899999999999999999988888999999999999
Q ss_pred cccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeecccc
Q 043235 140 VSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIA 219 (515)
Q Consensus 140 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~ 219 (515)
+++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+... +..+..
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~ 168 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----------------GFEPGA 168 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----------------GSCTTS
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-----------------CCCccc
Confidence 9999998 4555444 7899999999999877667788888888888888876431 123344
Q ss_pred ccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccc
Q 043235 220 LLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299 (515)
Q Consensus 220 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~ 299 (515)
+..+ +|++|++++|++++ +|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+.
T Consensus 169 ~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~------ 238 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS------ 238 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG------
T ss_pred ccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh------
Confidence 4444 66667777776654 333332 5677777777777766666677777777777777777654443332
Q ss_pred cccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcccccc
Q 043235 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW 379 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 379 (515)
.+++|++|++++|+++ .+|.
T Consensus 239 -----------------------------------------------------------~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 239 -----------------------------------------------------------FLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp -----------------------------------------------------------GCTTCCEEECCSSCCC-BCCT
T ss_pred -----------------------------------------------------------CCCCCCEEECCCCcCe-ecCh
Confidence 2556777777777777 5666
Q ss_pred chhccccCCeeccCCccccccChhhhcC------ccCCCeeeCCCCccc--ccCCccccCCCCCCEEecccCc
Q 043235 380 KIGQLQNIRALNLSNNLLSGAIPESFSN------LKMIESLDLSRNKLS--GQIPPQLTELNFLSNFNVSYNN 444 (515)
Q Consensus 380 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L~~L~Ls~N~ 444 (515)
.+..+++|++|++++|++++..+..|.. ...|+.|++++|++. +..|..|..++.|+.+++++|+
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6777777777777777777666666654 356777888888776 5566777778888888887764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=272.54 Aligned_cols=292 Identities=22% Similarity=0.259 Sum_probs=208.1
Q ss_pred CCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEE
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLN 139 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 139 (515)
.++++++++++.++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|++++..|..+..+++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 47899999999998 888654 46899999999999887777899999999999999999988788899999999999
Q ss_pred cccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeecccc
Q 043235 140 VSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIA 219 (515)
Q Consensus 140 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~ 219 (515)
+++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+... +..+..
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~ 166 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-----------------GIENGA 166 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG-----------------GBCTTG
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc-----------------CcChhh
Confidence 9999988 4555443 6889999999988877777788888888888888776431 123445
Q ss_pred ccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccc
Q 043235 220 LLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299 (515)
Q Consensus 220 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~ 299 (515)
+..+++|++|++++|+++. +|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.
T Consensus 167 ~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------ 237 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA------ 237 (330)
T ss_dssp GGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG------
T ss_pred ccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc------
Confidence 5666666777777766653 333332 5677777777777666666677777777777777766543332221
Q ss_pred cccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCcccccc
Q 043235 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPW 379 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 379 (515)
.+++|++|+|++|+++ .+|.
T Consensus 238 -----------------------------------------------------------~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 238 -----------------------------------------------------------NTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp -----------------------------------------------------------GSTTCCEEECCSSCCS-SCCT
T ss_pred -----------------------------------------------------------CCCCCCEEECCCCcCc-cCCh
Confidence 1456666777777776 5666
Q ss_pred chhccccCCeeccCCccccccChhhhcC------ccCCCeeeCCCCcccc--cCCccccCCCCCCEEecccCc
Q 043235 380 KIGQLQNIRALNLSNNLLSGAIPESFSN------LKMIESLDLSRNKLSG--QIPPQLTELNFLSNFNVSYNN 444 (515)
Q Consensus 380 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~l~~l~~L~~L~Ls~N~ 444 (515)
.+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+.. ..|..|..+..++.+++++|+
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6677777777777777777665555543 3567777777777753 455677777777777777774
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=305.82 Aligned_cols=371 Identities=16% Similarity=0.123 Sum_probs=287.0
Q ss_pred ccCCcEEECcCCcccccCCcc-ccCCCCCCEEECcCCcCccc----CchHHHhCCCCCCEEEccCccccccCCccc-cCC
Q 043235 35 FQKLIYLDMSKNNFEGNIPYS-VGEMKELTILDLSRNNFTGK----LPRPIVSSCLSLDWLDLSNNNFYGQLFPNY-MNL 108 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l 108 (515)
+++|++|++++|.++...... +..+++|++|++++|.+++. ++ ..+..+++|++|++++|.+....+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 468999999999998544433 78899999999999998732 23 335778999999999999976444433 334
Q ss_pred C----CCCEEEcccCCCCC----cCChhhhCCCCCcEEEcccCcCCCCcChhcc-----CCCCccEEEccCccccccc--
Q 043235 109 T----DLGSLYLDNNHFSG----KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG-----NFSVLSVLLMSENYLQGNI-- 173 (515)
Q Consensus 109 ~----~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~-- 173 (515)
+ +|++|++++|+++. .++..+..+++|++|++++|.++...+..+. ..++|++|++++|++++..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 79999999999984 4477889999999999999998754444332 3568999999999998643
Q ss_pred --cccccCCCCCcEEeCCCCCCCCcC----------CCCcccEEEcccCceeee----ccccccCCCCccEEeccCCccC
Q 043235 174 --PVQLNNLKSLEFIDLSENSLISLS----------NLSFVKHIYLQNNAIKGL----IPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 174 --~~~l~~l~~L~~L~L~~n~l~~l~----------~l~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
+..+..+++|++|++++|.+.... ..+.|++|++++|.+++. ++..+..+++|++|++++|++.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 556677899999999999984321 356899999999999874 4667778899999999999987
Q ss_pred CcCc-----hhhhcCCCcCEEEccCccCCCC----CCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCc
Q 043235 238 GRIP-----HQINERSNLHVLLLRGNYLQGR----IPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSE 308 (515)
Q Consensus 238 ~~~~-----~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~ 308 (515)
+... ..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+...
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------------- 307 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET------------- 307 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH-------------
Confidence 5432 2233588999999999999864 56677789999999999998864322221110
Q ss_pred ccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccc----cccchhcc
Q 043235 309 FFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGE----IPWKIGQL 384 (515)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l 384 (515)
.....++|++|++++|.+++. ++..+..+
T Consensus 308 -----------------------------------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 308 -----------------------------------------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp -----------------------------------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred -----------------------------------------------hccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence 001136899999999999865 45667778
Q ss_pred ccCCeeccCCccccccChhhhcC-----ccCCCeeeCCCCcccc----cCCccccCCCCCCEEecccCccccc-------
Q 043235 385 QNIRALNLSNNLLSGAIPESFSN-----LKMIESLDLSRNKLSG----QIPPQLTELNFLSNFNVSYNNLSGP------- 448 (515)
Q Consensus 385 ~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~------- 448 (515)
++|++|++++|++++..+..+.. .++|++|+|++|++++ .+|..+..+++|++|++++|++++.
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH
Confidence 99999999999998766655543 6799999999999996 7788899999999999999999864
Q ss_pred -CCCCcccCCCCcccccCCCC
Q 043235 449 -IPDKEQFATFDDCSYKGNSA 468 (515)
Q Consensus 449 -~p~~~~~~~l~~~~~~gn~~ 468 (515)
+|. ...+++.+.+.++.+
T Consensus 421 ~l~~--~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 421 SVRQ--PGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHTS--TTCCCCEEECTTCCC
T ss_pred Hhcc--CCcchhheeeccccc
Confidence 221 233566666666554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=268.85 Aligned_cols=248 Identities=27% Similarity=0.453 Sum_probs=125.6
Q ss_pred CCCEEEcccCCCCC--cCChhhhCCCCCcEEEccc-CcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEE
Q 043235 110 DLGSLYLDNNHFSG--KMTDGLLSSTLLRVLNVSN-NMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFI 186 (515)
Q Consensus 110 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 186 (515)
++++|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444444 4444444455555555542 44444444445555555555555555544444444444444433
Q ss_pred eCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCC-CcCEEEccCccCCCCCC
Q 043235 187 DLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERS-NLHVLLLRGNYLQGRIP 265 (515)
Q Consensus 187 ~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~ 265 (515)
++++| .+++..|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++..|
T Consensus 131 ~Ls~N-------------------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 131 DFSYN-------------------ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp ECCSS-------------------EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred eCCCC-------------------ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 33333 22223333444444444444444444444444444444 44444444444444444
Q ss_pred ccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCcccccccccccccee
Q 043235 266 NQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAK 345 (515)
Q Consensus 266 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (515)
..+..++ |++|++++|.+++..|..+..
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~--------------------------------------------------- 219 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGDASVLFGS--------------------------------------------------- 219 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEECCGGGCCT---------------------------------------------------
T ss_pred hHHhCCc-ccEEECcCCcccCcCCHHHhc---------------------------------------------------
Confidence 4444443 555555555444333332221
Q ss_pred eeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccC
Q 043235 346 FVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQI 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 425 (515)
+++|++|+|++|.+++.++. +..+++|++|+|++|++++.+|..|..+++|++|+|++|++++.+
T Consensus 220 --------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 220 --------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp --------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred --------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 33445555555555533333 455566666666666666666666666666666666666666666
Q ss_pred CccccCCCCCCEEecccCc
Q 043235 426 PPQLTELNFLSNFNVSYNN 444 (515)
Q Consensus 426 ~~~l~~l~~L~~L~Ls~N~ 444 (515)
|.. ..+++|+.+++++|+
T Consensus 285 p~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSS
T ss_pred CCC-ccccccChHHhcCCC
Confidence 654 566666666777666
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=261.06 Aligned_cols=276 Identities=21% Similarity=0.189 Sum_probs=236.5
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
.|+.....+++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+.++++|+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCC
Confidence 4666778999999998 899876 468999999999999777778999999999999999998 66666668899999
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCC-hhhhCCCCCcEEEcccC-cCCCCcChhccCCCCccEEEccC
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMT-DGLLSSTLLRVLNVSNN-MLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
+|++++|++++..+..+.++++|++|++++|+++.... ..+..+++|++|++++| .+....+..+..+++|++|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999999987666668999999999999999986544 47889999999999999 47766678899999999999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCCcC-----CCCcccEEEcccCceeeecccccc---CCCCccEEeccCCccCC
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLISLS-----NLSFVKHIYLQNNAIKGLIPIALL---RSSTLLTLDLRDNKLFG 238 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~-----~l~~L~~L~L~~n~i~~~~~~~~~---~~~~L~~L~Ls~n~i~~ 238 (515)
|.+.+..|..+..+++|++|++++|++..++ .+++|++|++++|.+++..+..+. ....++.++++++.+.+
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 9999888999999999999999999997665 478999999999999886554433 45678999999998875
Q ss_pred ----cCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCC
Q 043235 239 ----RIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP 289 (515)
Q Consensus 239 ----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p 289 (515)
.+|.++..+++|+.|++++|+++...+..|..+++|++|++++|++.+..|
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 357788999999999999999995544556899999999999999987654
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=246.24 Aligned_cols=180 Identities=22% Similarity=0.236 Sum_probs=75.1
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCc--CChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEE
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK--MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLL 163 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 163 (515)
+|++|++++|+++...+..|.++++|++|++++|+++.. .+..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 344444444444332222334444444444444444311 1233334444444444444444 2333344444455555
Q ss_pred ccCcccccccc-ccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCC-cCc
Q 043235 164 MSENYLQGNIP-VQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFG-RIP 241 (515)
Q Consensus 164 l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~ 241 (515)
+++|++.+..+ ..+..+++|++|+++ +|.+.+..+..+..+++|++|++++|.+.+ ..|
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~-------------------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDIS-------------------HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECT-------------------TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred CCCCcccccccchhhhhccCCCEEECC-------------------CCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 55544443222 223333333333333 233333333344444444444444444433 234
Q ss_pred hhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCc
Q 043235 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285 (515)
Q Consensus 242 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 285 (515)
..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 44444444444444444444444444444444444444444443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=254.27 Aligned_cols=262 Identities=21% Similarity=0.225 Sum_probs=226.1
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.++|++|++++|+++ .++...+..+++|++|++++|.+++..+.+|.++++|++|++++|+++ .++...+
T Consensus 43 l~~iP~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 120 (353)
T 2z80_A 43 LNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWF 120 (353)
T ss_dssp CSSCCTTCCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHH
T ss_pred cccccccccccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHh
Confidence 45677777789999999999999 566543344899999999999999888889999999999999999999 8998878
Q ss_pred hCCCCCCEEEccCccccccCC-ccccCCCCCCEEEcccC-CCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc
Q 043235 82 SSCLSLDWLDLSNNNFYGQLF-PNYMNLTDLGSLYLDNN-HFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL 159 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 159 (515)
..+++|++|++++|+++.... ..+.++++|++|++++| .+....+..+..+++|++|++++|.+++..|..+..+++|
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 999999999999999986554 47899999999999999 5776777889999999999999999998889999999999
Q ss_pred cEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--------CCCcccEEEcccCceeee----ccccccCCCCcc
Q 043235 160 SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--------NLSFVKHIYLQNNAIKGL----IPIALLRSSTLL 227 (515)
Q Consensus 160 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--------~l~~L~~L~L~~n~i~~~----~~~~~~~~~~L~ 227 (515)
++|++++|.+.......+..+++|+.|++++|.+..+. ....++.++++++.+.+. +|..+..+++|+
T Consensus 201 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 99999999998555445567899999999999997643 356688899999888763 567788999999
Q ss_pred EEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCC
Q 043235 228 TLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIP 265 (515)
Q Consensus 228 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 265 (515)
+|++++|+++...+..|..+++|++|++++|++.+..+
T Consensus 281 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999999985544446899999999999999986543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=241.24 Aligned_cols=248 Identities=23% Similarity=0.297 Sum_probs=207.7
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccC---chHHHhCCCCCCEE
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKL---PRPIVSSCLSLDWL 90 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l---~~~~~~~l~~L~~L 90 (515)
+.++++++.++ .+|..+ .++|++|++++|.++...+..|.++++|++|++++|.++ .+ +..+ ..+++|++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~-~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSD-FGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHH-HSCSCCCEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCccccc-ccccccCEE
Confidence 68999999998 888865 468999999999999665666899999999999999987 44 4554 568999999
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCC-hhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMT-DGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (515)
++++|.++. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 84 ~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 84 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 999999974 56678899999999999999986554 5788889999999999999878888888899999999999988
Q ss_pred cc-cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCC
Q 043235 170 QG-NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERS 248 (515)
Q Consensus 170 ~~-~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~ 248 (515)
.+ ..|..+..+++|++|++++ |.+++..+..+..+++|++|++++|++++..+..+..++
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~-------------------n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQ-------------------CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTT-------------------SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred ccccchhHHhhCcCCCEEECCC-------------------CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 76 4666666666666555555 455666677888889999999999999887777888999
Q ss_pred CcCEEEccCccCCCCCCccccCCC-CCCEEECCCCcCcCC
Q 043235 249 NLHVLLLRGNYLQGRIPNQLCQLR-KLSIMDLSRNRLNGP 287 (515)
Q Consensus 249 ~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~~~ 287 (515)
+|+.|++++|++++..+..+..++ +|++|++++|++++.
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 999999999999988888888884 999999999999754
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=237.93 Aligned_cols=225 Identities=21% Similarity=0.240 Sum_probs=153.3
Q ss_pred cEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEccc
Q 043235 39 IYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118 (515)
Q Consensus 39 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 118 (515)
++++.+++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666666 344433 356667777777666 55555456666677777766666665566666666666666666
Q ss_pred CC-CCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC
Q 043235 119 NH-FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS 197 (515)
Q Consensus 119 n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~ 197 (515)
|+ +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------- 155 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-------------- 155 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------
Confidence 65 555555666666666666666666665555666666666666666666664444444444444
Q ss_pred CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEE
Q 043235 198 NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIM 277 (515)
Q Consensus 198 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 277 (515)
++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|++|
T Consensus 156 -----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 156 -----THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp -----CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred -----cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 444555555566666677888888888888888888778888888888888888888887666778888888999
Q ss_pred ECCCCcCcC
Q 043235 278 DLSRNRLNG 286 (515)
Q Consensus 278 ~L~~n~i~~ 286 (515)
++++|++..
T Consensus 231 ~l~~N~~~c 239 (285)
T 1ozn_A 231 RLNDNPWVC 239 (285)
T ss_dssp ECCSSCEEC
T ss_pred eccCCCccC
Confidence 998888864
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-29 Score=250.00 Aligned_cols=248 Identities=20% Similarity=0.197 Sum_probs=173.9
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
.+.++.+++.++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|+|++|.++ .++...|.++++|++|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 456666666666 666654 356677777777776666666666777777777777666 555555566666666666
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccC-cCCCCcChhccCCCCccEEEccCccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNN-MLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
++|+++...+..|..+++|++|++++|++....+..|..+++|++|++++| .+....+..|.++++|++|++++|.++.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 666666555555666666666666666666555555666666666666653 2332222345555555555555555442
Q ss_pred cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLH 251 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 251 (515)
+| .+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+
T Consensus 200 -~~--------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 200 -IP--------------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp -CC--------------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred -cc--------------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 11 123456677788888888888888999999999999999999988889999999999
Q ss_pred EEEccCccCCCCCCccccCCCCCCEEECCCCcCcC
Q 043235 252 VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 252 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 286 (515)
.|+|++|++++..+..|..+++|+.|++++|++..
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 99999999998888888999999999999999864
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-29 Score=250.23 Aligned_cols=246 Identities=18% Similarity=0.198 Sum_probs=164.0
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
.+.++.++..++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|+|++|.++ .++...|.++++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence 345566666665 555543 245666666666666555556666666666666666665 444444455566666666
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
++|+++...+..|.++++|++|++++|+++...+..|..+++|++|++++| +.+...
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~-----------------------~~l~~i 187 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL-----------------------KKLEYI 187 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC-----------------------TTCCEE
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC-----------------------CCcccc
Confidence 666655544444555555555555555555444445555555555555552 222222
Q ss_pred ccccccCCCCCcEEeCCCCCCCCc---CCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCC
Q 043235 173 IPVQLNNLKSLEFIDLSENSLISL---SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSN 249 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~~l---~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~ 249 (515)
.+..|..+++|+.|++++|++..+ ..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 222344445555555555544333 35567788888888888888999999999999999999999888999999999
Q ss_pred cCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcC
Q 043235 250 LHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 250 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 286 (515)
|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 9999999999998888888999999999999999864
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-31 Score=255.24 Aligned_cols=263 Identities=19% Similarity=0.177 Sum_probs=192.3
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+ +..+++|++|++++|++.
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 344444432333333444556666666666655555556666666666666666654433 566666666666666666
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccc-cCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQL-CQLRK 273 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~ 273 (515)
.+...+.|++|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++
T Consensus 94 ~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 94 ELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp EEEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred cccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 6665677777777778777765443 5679999999999988777788888999999999999987766666 47899
Q ss_pred CCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccc
Q 043235 274 LSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYE 353 (515)
Q Consensus 274 L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (515)
|++|++++|.+++. +..
T Consensus 171 L~~L~L~~N~l~~~-~~~-------------------------------------------------------------- 187 (317)
T 3o53_A 171 LEHLNLQYNFIYDV-KGQ-------------------------------------------------------------- 187 (317)
T ss_dssp CCEEECTTSCCCEE-ECC--------------------------------------------------------------
T ss_pred CCEEECCCCcCccc-ccc--------------------------------------------------------------
Confidence 99999999988632 110
Q ss_pred cccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCccc-ccCCccccCC
Q 043235 354 FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS-GQIPPQLTEL 432 (515)
Q Consensus 354 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l 432 (515)
..+++|++|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..+
T Consensus 188 ----~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 188 ----VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp ----CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred ----cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 116789999999999995 4555889999999999999998 56778999999999999999998 7788889999
Q ss_pred CCCCEEeccc-CcccccCCC
Q 043235 433 NFLSNFNVSY-NNLSGPIPD 451 (515)
Q Consensus 433 ~~L~~L~Ls~-N~l~~~~p~ 451 (515)
+.|+.+++++ +.+++..|.
T Consensus 262 ~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHHHHHHHSSSSC
T ss_pred ccceEEECCCchhccCCchh
Confidence 9999999994 456665554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=239.85 Aligned_cols=256 Identities=19% Similarity=0.146 Sum_probs=207.5
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-++++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CeEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeC
Confidence 378999999998 888765 579999999999999888888999999999999999998 565555688999999999
Q ss_pred cCcc-ccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 93 SNNN-FYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 93 ~~n~-i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
++|. ++...+..+..+++|++|++++|++++..+..+..+++|++|++++|.++...+..+..+++|++|++++|++++
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 9997 887778889999999999999999998888899999999999999999998777789999999999999999997
Q ss_pred cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLH 251 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 251 (515)
..+..+..+++|+.|++++| .+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQN-------------------RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSS-------------------CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred cCHHHhcCccccCEEECCCC-------------------cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 66666777766666666555 45556677788888899999999998877777788888999
Q ss_pred EEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCcccc
Q 043235 252 VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLG 293 (515)
Q Consensus 252 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~ 293 (515)
.|++++|++....+.. .....++.+..+.+.+....|..+.
T Consensus 229 ~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 229 YLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp EEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred EEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 9999998887432211 0111233334555666555555443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=247.13 Aligned_cols=237 Identities=20% Similarity=0.178 Sum_probs=199.3
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
|..+|..-.++++.|++++|++++..+..+. .+++|++|+|++|.+++..+.+|.++++|++|+|++|+++ .++...|
T Consensus 55 l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 132 (440)
T 3zyj_A 55 LREVPDGISTNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAF 132 (440)
T ss_dssp CSSCCSCCCTTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTS
T ss_pred cCcCCCCCCCCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHh
Confidence 4667877789999999999999944445554 4899999999999999888899999999999999999999 8888778
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEccc-CCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN-NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS 160 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 160 (515)
..+++|++|++++|.++...+..|.++++|++|++++ +.+....+..|..+++|++|++++|.++ .+| .+..+++|+
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLD 210 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCC
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccC
Confidence 9999999999999999988888899999999999999 4565555668999999999999999998 445 488899999
Q ss_pred EEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcC
Q 043235 161 VLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRI 240 (515)
Q Consensus 161 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 240 (515)
+|++++|++++..+..|..+++|+.|++++|++ +++.+..|..+++|++|+|++|++++..
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-------------------QVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-------------------CEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCce-------------------eEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 999999999988888888887777777766654 4555666777777788888888777666
Q ss_pred chhhhcCCCcCEEEccCccCC
Q 043235 241 PHQINERSNLHVLLLRGNYLQ 261 (515)
Q Consensus 241 ~~~~~~l~~L~~L~L~~n~i~ 261 (515)
+..|..+++|+.|+|++|.+.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 667777777888888877765
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-31 Score=278.49 Aligned_cols=406 Identities=13% Similarity=0.051 Sum_probs=232.1
Q ss_pred CCCCccEEeCcCCcCC---CCCc-----------hhHHhcccCCcEEECcCCcccccCCccccC-CC-CCCEEECcCCc-
Q 043235 9 KYDKLRHLDISSNNFS---GKLP-----------ENLGIIFQKLIYLDMSKNNFEGNIPYSVGE-MK-ELTILDLSRNN- 71 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~---~~~p-----------~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~-l~-~L~~L~L~~n~- 71 (515)
.+++|++|+++++... +.+| ..+...+++|++|+|++|.+++..+..+.. ++ +|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 4666777777664321 1222 122223677777777777776555555544 23 37777777775
Q ss_pred CcccCchHHHhCCCCCCEEEccCccccccC----CccccCCCCCCEEEcccCCCCCc----CChhhhCCCCCcEEEcccC
Q 043235 72 FTGKLPRPIVSSCLSLDWLDLSNNNFYGQL----FPNYMNLTDLGSLYLDNNHFSGK----MTDGLLSSTLLRVLNVSNN 143 (515)
Q Consensus 72 l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n 143 (515)
++...-..+...+++|++|++++|.+++.. +..+..+++|++|++++|.+++. .+..+..+++|++|++++|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 221111222346777777777777765432 22345567777777777777522 2333456677777777777
Q ss_pred cCCCCcChhccCCCCccEEEccCcccc---ccccccccCCCCCcEEeCCCCCCCCcC----CCCcccEEEcccCceeeec
Q 043235 144 MLSGDIPHWIGNFSVLSVLLMSENYLQ---GNIPVQLNNLKSLEFIDLSENSLISLS----NLSFVKHIYLQNNAIKGLI 216 (515)
Q Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~l~----~l~~L~~L~L~~n~i~~~~ 216 (515)
.+.+ ++..+..+++|++|+++..... ...+..+..+++|+.++++++....++ .+++|++|++++|.+++..
T Consensus 231 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 231 EILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp BGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred cHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence 7763 5566777777777777653222 122344556667777777665433322 4556777777777655432
Q ss_pred c-ccccCCCCccEEeccCCccCC-cCchhhhcCCCcCEEEccC-----------ccCCCCC-CccccCCCCCCEEECCCC
Q 043235 217 P-IALLRSSTLLTLDLRDNKLFG-RIPHQINERSNLHVLLLRG-----------NYLQGRI-PNQLCQLRKLSIMDLSRN 282 (515)
Q Consensus 217 ~-~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~-----------n~i~~~~-~~~~~~l~~L~~L~L~~n 282 (515)
. ..+..+++|++|+++ +.+.+ ..+.....+++|++|++++ |.+++.. ......+++|++|+++.|
T Consensus 310 ~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 2 234566777777776 33322 2233335566777777772 4444321 122334667777777666
Q ss_pred cCcCCCCccccC-CcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccc
Q 043235 283 RLNGPIPSCLGN-VPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN 361 (515)
Q Consensus 283 ~i~~~~p~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (515)
.+++..+..+.. ++.|+.+...... ..+ ....... . ... ......++
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~---~~n------------------------~l~~~p~---~-~~~-~~~~~~~~ 436 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLD---REE------------------------RITDLPL---D-NGV-RSLLIGCK 436 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECS---CCS------------------------CCSSCCC---H-HHH-HHHHHHCT
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecC---CCc------------------------cccCchH---H-HHH-HHHHHhCC
Confidence 665544333322 3333221110000 000 0000000 0 000 00013378
Q ss_pred cCCEEEcCCCc--Cccccccchh-ccccCCeeccCCcccccc-ChhhhcCccCCCeeeCCCCccccc-CCccccCCCCCC
Q 043235 362 YMAGLDLSGNE--FSGEIPWKIG-QLQNIRALNLSNNLLSGA-IPESFSNLKMIESLDLSRNKLSGQ-IPPQLTELNFLS 436 (515)
Q Consensus 362 ~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~ 436 (515)
+|++|++++|. +++..+..+. .+++|++|++++|++++. .+..+..+++|++|+|++|.+++. ++.....+++|+
T Consensus 437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 (592)
T ss_dssp TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence 89999997654 6655555554 378899999999998753 455567889999999999998754 344456789999
Q ss_pred EEecccCccccc
Q 043235 437 NFNVSYNNLSGP 448 (515)
Q Consensus 437 ~L~Ls~N~l~~~ 448 (515)
+|++++|++++.
T Consensus 517 ~L~ls~n~it~~ 528 (592)
T 3ogk_B 517 YLWVQGYRASMT 528 (592)
T ss_dssp EEEEESCBCCTT
T ss_pred eeECcCCcCCHH
Confidence 999999998764
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=248.03 Aligned_cols=237 Identities=19% Similarity=0.140 Sum_probs=198.7
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|..-.+++++|++++|++++..+..+.. +++|++|+|++|.+++..+.+|.++++|++|+|++|.++ .++...|
T Consensus 66 l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 143 (452)
T 3zyi_A 66 LSEVPQGIPSNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAF 143 (452)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTS
T ss_pred cCccCCCCCCCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhh
Confidence 45677777789999999999999555665555 899999999999999888899999999999999999999 8888888
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEccc-CCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN-NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS 160 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 160 (515)
..+++|++|++++|.++...+..|.++++|++|++++ +.+....+..|..+++|++|++++|.+++. | .+..+++|+
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 221 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLE 221 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCC
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccccccc
Confidence 9999999999999999988778899999999999999 556655566788999999999999999854 4 478899999
Q ss_pred EEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcC
Q 043235 161 VLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRI 240 (515)
Q Consensus 161 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 240 (515)
+|++++|.+.+..|..|..+++|+.|++++|++ ++..+..|..+++|++|+|++|++++..
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-------------------SLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCC-------------------CEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcC-------------------ceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 999999999988888888887777777766654 4555666777777777777777777666
Q ss_pred chhhhcCCCcCEEEccCccCC
Q 043235 241 PHQINERSNLHVLLLRGNYLQ 261 (515)
Q Consensus 241 ~~~~~~l~~L~~L~L~~n~i~ 261 (515)
+..+..+++|+.|+|++|.+.
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCEE
T ss_pred hHHhccccCCCEEEccCCCcC
Confidence 666777777888888777765
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=236.17 Aligned_cols=233 Identities=20% Similarity=0.227 Sum_probs=126.9
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
.+++.|++++|.++ .+|..++. +++|++|+|++|.++ .+|..+.++++|++|++++|.++ .+|..+ ..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEE
Confidence 44455555555554 44444444 445555555555554 44444555555555555555554 444432 444555555
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++++|.+.+..|..+... .....+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 555544444444333220 00011223666666666666666 55666666666666666666666
Q ss_pred ccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCc
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNL 250 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 250 (515)
+ +|..+..+++|++|++++|.+ .+.+|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~-------------------~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTA-------------------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTT-------------------CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred c-CchhhccCCCCCEEECcCCcc-------------------hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 3 444566666555555555433 23344555566666666666666666666666666666
Q ss_pred CEEEccCccCCCCCCccccCCCCCCEEECCCCcC
Q 043235 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284 (515)
Q Consensus 251 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i 284 (515)
++|+|++|++.+.+|..+..+++|+.+++..+.+
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 6666666666666666666666666666665544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-30 Score=249.35 Aligned_cols=258 Identities=19% Similarity=0.191 Sum_probs=204.3
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
.+++..+++.+.+. ..+..++..+++|++|++++|.+++..|..|.++++|++|++++|.+++ ++. +..+++|++|
T Consensus 10 ~~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L 85 (317)
T 3o53_A 10 NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTL 85 (317)
T ss_dssp TEEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEE
T ss_pred CceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEE
Confidence 34677788888886 6666676667899999999999998778899999999999999999984 443 6889999999
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++++|.+++.. ..++|++|++++|++++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 99999987533 348999999999999865544 3678999999999999877778889999999999999999
Q ss_pred cccccccc-CCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhc
Q 043235 171 GNIPVQLN-NLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246 (515)
Q Consensus 171 ~~~~~~l~-~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 246 (515)
+..+..+. .+++|++|++++|.+..+. .+++|++|++++|+++++.+ .+..+++|++|++++|+++ .+|..+..
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhc
Confidence 87776664 6889999999999886544 46677777777777776544 3667777777777777776 34566677
Q ss_pred CCCcCEEEccCccCC-CCCCccccCCCCCCEEECCCC
Q 043235 247 RSNLHVLLLRGNYLQ-GRIPNQLCQLRKLSIMDLSRN 282 (515)
Q Consensus 247 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n 282 (515)
+++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 777777777777776 556666677777777777633
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=248.86 Aligned_cols=115 Identities=23% Similarity=0.223 Sum_probs=67.6
Q ss_pred cCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEE
Q 043235 36 QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLY 115 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 115 (515)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++. +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 35777777777777 5555554 67777777777776 6664 35667777777777653 222 456666666
Q ss_pred cccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 116 LDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 116 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
+++|++++. |. .+++|++|++++|+++. +|.. +++|++|++++|.++
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA 154 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence 666666532 22 34555666666665553 2321 244555555555444
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-31 Score=277.66 Aligned_cols=409 Identities=15% Similarity=0.094 Sum_probs=283.9
Q ss_pred EEeCcCCcCCCCCchhHHhcccCCcEEECcCCccc---ccCCcccc------------CCCCCCEEECcCCcCcccCchH
Q 043235 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFE---GNIPYSVG------------EMKELTILDLSRNNFTGKLPRP 79 (515)
Q Consensus 15 ~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~---~~~~~~~~------------~l~~L~~L~L~~n~l~~~l~~~ 79 (515)
.+.+.++ .. ..|..+...+++|++|+++++... +..|..++ .+++|++|+|++|.+++..+..
T Consensus 54 ~l~~~~~-~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~ 131 (592)
T 3ogk_B 54 HVTMALC-YT-ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131 (592)
T ss_dssp EEEESCG-GG-SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred EEEEeec-cc-cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHH
Confidence 4444433 33 456666666899999999886431 23333333 7899999999999888554544
Q ss_pred HHhCCCC-CCEEEccCcc-cccc-CCccccCCCCCCEEEcccCCCCCcC----ChhhhCCCCCcEEEcccCcCCC----C
Q 043235 80 IVSSCLS-LDWLDLSNNN-FYGQ-LFPNYMNLTDLGSLYLDNNHFSGKM----TDGLLSSTLLRVLNVSNNMLSG----D 148 (515)
Q Consensus 80 ~~~~l~~-L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~----~ 148 (515)
+...+++ |++|++++|. ++.. .+....++++|++|++++|.+++.. +..+..+++|++|++++|.+++ .
T Consensus 132 l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 4333445 9999999987 2211 1122347899999999999987553 3345678999999999999973 3
Q ss_pred cChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCC--------CCcCCCCcccEEEcccCceeeeccccc
Q 043235 149 IPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL--------ISLSNLSFVKHIYLQNNAIKGLIPIAL 220 (515)
Q Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l--------~~l~~l~~L~~L~L~~n~i~~~~~~~~ 220 (515)
++..+..+++|++|++++|.+.+ ++..+..+++|+.|+++.... ..+..+++|+.++++++... ..+..+
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~ 289 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILF 289 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGG
T ss_pred HHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHH
Confidence 34456778999999999999985 667889999999999985322 34457788999999886433 356677
Q ss_pred cCCCCccEEeccCCccCCcCc-hhhhcCCCcCEEEccCccCCC-CCCccccCCCCCCEEECCC-----------CcCcCC
Q 043235 221 LRSSTLLTLDLRDNKLFGRIP-HQINERSNLHVLLLRGNYLQG-RIPNQLCQLRKLSIMDLSR-----------NRLNGP 287 (515)
Q Consensus 221 ~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~-----------n~i~~~ 287 (515)
..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+ .++..+..+++|++|++++ |.+++.
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 889999999999999765443 346789999999999 44443 3344456789999999994 455432
Q ss_pred CC-ccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEE
Q 043235 288 IP-SCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGL 366 (515)
Q Consensus 288 ~p-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 366 (515)
.. .....++.|+.+... ... +... .....+..+++|+.|
T Consensus 369 ~~~~l~~~~~~L~~L~l~-------------------------------~~~--------l~~~-~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVY-------------------------------VSD--------ITNE-SLESIGTYLKNLCDF 408 (592)
T ss_dssp HHHHHHHHCTTCSEEEEE-------------------------------ESC--------CCHH-HHHHHHHHCCSCCEE
T ss_pred HHHHHHhhCccCeEEEee-------------------------------cCC--------ccHH-HHHHHHhhCCCCcEE
Confidence 11 111223333321100 000 0000 000111237889999
Q ss_pred EcC----CCcCccc-----cccchhccccCCeeccCCcc--ccccChhhhc-CccCCCeeeCCCCcccc-cCCccccCCC
Q 043235 367 DLS----GNEFSGE-----IPWKIGQLQNIRALNLSNNL--LSGAIPESFS-NLKMIESLDLSRNKLSG-QIPPQLTELN 433 (515)
Q Consensus 367 ~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~~~~l~~l~ 433 (515)
+++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|++|+|++|++++ .++..+..++
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence 996 6778753 33446779999999998654 6655555554 48999999999999986 3455678899
Q ss_pred CCCEEecccCcccccC-CC-CcccCCCCcccccCCCC
Q 043235 434 FLSNFNVSYNNLSGPI-PD-KEQFATFDDCSYKGNSA 468 (515)
Q Consensus 434 ~L~~L~Ls~N~l~~~~-p~-~~~~~~l~~~~~~gn~~ 468 (515)
+|++|++++|++++.. +. ...+.+++.+.+.+|..
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 9999999999987653 33 34678899999999873
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=246.14 Aligned_cols=268 Identities=26% Similarity=0.316 Sum_probs=194.5
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
.+++.|++++|.++ .+|..++ ++|++|++++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence 36899999999999 8998764 79999999999999 4555 5799999999999998 7886 68999999
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++++|.+++. +. .+++|++|++++|+++. +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.++
T Consensus 107 ~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 107 SIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp EECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred ECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC
Confidence 9999999864 33 67899999999999985 4443 4889999999999985 443 3567999999999988
Q ss_pred ccccccccCCCCCcEEeCCCCCCCCcC-CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCC
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLISLS-NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSN 249 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~ 249 (515)
+ +| ..+++|+.|++++|.+..++ .+ ++|+.|++++|.++. +|. .+++
T Consensus 175 ~-l~---~~~~~L~~L~Ls~N~l~~l~~~~------------------------~~L~~L~L~~N~l~~-l~~---~~~~ 222 (622)
T 3g06_A 175 S-LP---MLPSGLQELSVSDNQLASLPTLP------------------------SELYKLWAYNNRLTS-LPA---LPSG 222 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCSCCCCCC------------------------TTCCEEECCSSCCSS-CCC---CCTT
T ss_pred C-Cc---ccCCCCcEEECCCCCCCCCCCcc------------------------chhhEEECcCCcccc-cCC---CCCC
Confidence 5 44 34577777777777766543 23 345555555555542 222 1255
Q ss_pred cCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCccccc
Q 043235 250 LHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQ 329 (515)
Q Consensus 250 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (515)
|+.|++++|++++ +| ..+++|++|++++|.++. +|.
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~--------------------------------------- 258 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM--------------------------------------- 258 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---------------------------------------
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---------------------------------------
Confidence 6666666666663 33 334666777777776652 221
Q ss_pred CccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCcc
Q 043235 330 LPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLK 409 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 409 (515)
.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus 259 -----------------------------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 259 -----------------------------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp -----------------------------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred -----------------------------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 0455666777777777 5566677777777777777777766666666554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=233.72 Aligned_cols=220 Identities=19% Similarity=0.244 Sum_probs=161.4
Q ss_pred CCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEE
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLN 139 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 139 (515)
+++++|++++|.++ .+|..+ ..+++|++|++++|.++ .+|..+.++++|++|++++|+++ .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 55666666666666 566554 33666666666666665 45556666666666666666666 4566666666666666
Q ss_pred cccCcCCCCcChhcc---------CCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccC
Q 043235 140 VSNNMLSGDIPHWIG---------NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNN 210 (515)
Q Consensus 140 l~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n 210 (515)
+++|.+.+.+|..+. .+++|++|++++|.++ .+|..+..+++|++ |++++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~-------------------L~L~~N 216 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS-------------------LKIRNS 216 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE-------------------EEEESS
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE-------------------EEccCC
Confidence 666665555555443 3666666666666666 45555555555555 455555
Q ss_pred ceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCc
Q 043235 211 AIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPS 290 (515)
Q Consensus 211 ~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~ 290 (515)
.++++ |..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.
T Consensus 217 ~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 217 PLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 55553 45688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccccCC
Q 043235 291 CLGNVPFWREATDD 304 (515)
Q Consensus 291 ~~~~l~~l~~~~~~ 304 (515)
.+.+++.++.+...
T Consensus 296 ~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 296 LIAQLPANCIILVP 309 (328)
T ss_dssp GGGGSCTTCEEECC
T ss_pred HHhhccCceEEeCC
Confidence 99999988775443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-29 Score=238.87 Aligned_cols=242 Identities=21% Similarity=0.207 Sum_probs=194.3
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCc-ccCchHHH------hCCCCCCEEEccCccccccCCccc--
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT-GKLPRPIV------SSCLSLDWLDLSNNNFYGQLFPNY-- 105 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~l~~~~~------~~l~~L~~L~L~~n~i~~~~~~~~-- 105 (515)
.++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ..+++|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45688888888888 466655544 888888888884 34565442 158889999999998887777765
Q ss_pred cCCCCCCEEEcccCCCCCcCChhhhCC-----CCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc--ccccc-
Q 043235 106 MNLTDLGSLYLDNNHFSGKMTDGLLSS-----TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN--IPVQL- 177 (515)
Q Consensus 106 ~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l- 177 (515)
..+++|++|++++|++++. |..+..+ ++|++|++++|++++..+..++.+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 7888999999999998866 7777766 8899999999999887778888999999999999987654 23334
Q ss_pred -cCCCCCcEEeCCCCCCCCcC--------CCCcccEEEcccCceeeecc-ccccCCCCccEEeccCCccCCcCchhhhcC
Q 043235 178 -NNLKSLEFIDLSENSLISLS--------NLSFVKHIYLQNNAIKGLIP-IALLRSSTLLTLDLRDNKLFGRIPHQINER 247 (515)
Q Consensus 178 -~~l~~L~~L~L~~n~l~~l~--------~l~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l 247 (515)
..+++|++|++++|++..+. .+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 78889999999999987432 55889999999999988764 45667899999999999998 6676665
Q ss_pred CCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcC
Q 043235 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 248 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 286 (515)
++|++|+|++|++++. |. +..+++|++|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999966 55 8899999999999999875
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-28 Score=251.49 Aligned_cols=234 Identities=21% Similarity=0.176 Sum_probs=175.8
Q ss_pred CCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCcee
Q 043235 134 LLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIK 213 (515)
Q Consensus 134 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~ 213 (515)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+..++..+.|++|++++|.++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~ 112 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS 112 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence 67777777777776666777777777777777777775544 7777777777777777776666677888888888887
Q ss_pred eeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCcccc-CCCCCCEEECCCCcCcCCCCccc
Q 043235 214 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLC-QLRKLSIMDLSRNRLNGPIPSCL 292 (515)
Q Consensus 214 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~p~~~ 292 (515)
+..+. .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|++|++++|.+++..+.
T Consensus 113 ~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-- 187 (487)
T 3oja_A 113 RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-- 187 (487)
T ss_dssp CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--
T ss_pred CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--
Confidence 76554 346788888888888887777888888888888888888877777765 688888888888887643111
Q ss_pred cCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCc
Q 043235 293 GNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNE 372 (515)
Q Consensus 293 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 372 (515)
..+++|++|+|++|.
T Consensus 188 -----------------------------------------------------------------~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 188 -----------------------------------------------------------------VVFAKLKTLDLSSNK 202 (487)
T ss_dssp -----------------------------------------------------------------CCCTTCCEEECCSSC
T ss_pred -----------------------------------------------------------------ccCCCCCEEECCCCC
Confidence 115678888888888
Q ss_pred CccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCccc-ccCCccccCCCCCCEEecc
Q 043235 373 FSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS-GQIPPQLTELNFLSNFNVS 441 (515)
Q Consensus 373 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L~~L~Ls 441 (515)
+++.. ..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 203 l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 203 LAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 88544 447778888888888888874 5666777888888888888887 5566667777777777665
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-29 Score=238.88 Aligned_cols=243 Identities=22% Similarity=0.212 Sum_probs=205.1
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCccc-ccCCcccc-------CCCCCCEEECcCCcCcccCchHH
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFE-GNIPYSVG-------EMKELTILDLSRNNFTGKLPRPI 80 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~l~~~~ 80 (515)
..++|+.|++++|.+ .+|..+.. .|++|++++|.++ ...|..+. ++++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 356789999999999 78988875 3999999999994 45666555 79999999999999997888776
Q ss_pred H-hCCCCCCEEEccCccccccCCccccCC-----CCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCC--cChh
Q 043235 81 V-SSCLSLDWLDLSNNNFYGQLFPNYMNL-----TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGD--IPHW 152 (515)
Q Consensus 81 ~-~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~ 152 (515)
+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 4 7899999999999999876 7777777 9999999999999988889999999999999999998654 2334
Q ss_pred c--cCCCCccEEEccCccccc---cccccccCCCCCcEEeCCCCCCCCcC------CCCcccEEEcccCceeeecccccc
Q 043235 153 I--GNFSVLSVLLMSENYLQG---NIPVQLNNLKSLEFIDLSENSLISLS------NLSFVKHIYLQNNAIKGLIPIALL 221 (515)
Q Consensus 153 ~--~~l~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~l~------~l~~L~~L~L~~n~i~~~~~~~~~ 221 (515)
+ ..+++|++|++++|++++ .....+..+++|++|++++|++.... .+++|++|++++|.++.+ |..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc
Confidence 4 889999999999999983 22244568899999999999996532 468899999999999954 55555
Q ss_pred CCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCC
Q 043235 222 RSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQG 262 (515)
Q Consensus 222 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 262 (515)
++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7999999999999876 55 8899999999999999985
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-28 Score=244.71 Aligned_cols=242 Identities=21% Similarity=0.214 Sum_probs=177.1
Q ss_pred CCchhHHhc---ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCC
Q 043235 26 KLPENLGII---FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLF 102 (515)
Q Consensus 26 ~~p~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~ 102 (515)
.+|..+... +++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~- 96 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL- 96 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-
Confidence 456666543 2389999999999998888899999999999999999985444 688999999999999987543
Q ss_pred ccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccccccccc-CCC
Q 043235 103 PNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLN-NLK 181 (515)
Q Consensus 103 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~ 181 (515)
..++|++|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .++
T Consensus 97 ----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 97 ----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (487)
T ss_dssp ----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred ----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence 238999999999999876554 457899999999999988888899999999999999999988887775 688
Q ss_pred CCcEEeCCCCCCCCcC---CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCc
Q 043235 182 SLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGN 258 (515)
Q Consensus 182 ~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 258 (515)
+|+.|++++|.+..+. .++.|++|++++|.++++++ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTC
T ss_pred cccEEecCCCccccccccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCC
Confidence 8888888888875443 35556666666666665433 25555566666666666553 3444555555666666655
Q ss_pred cCC-CCCCccccCCCCCCEEECC
Q 043235 259 YLQ-GRIPNQLCQLRKLSIMDLS 280 (515)
Q Consensus 259 ~i~-~~~~~~~~~l~~L~~L~L~ 280 (515)
.+. +..|.++..++.|+.++++
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEecc
Confidence 555 3344444555555544443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=218.44 Aligned_cols=166 Identities=25% Similarity=0.262 Sum_probs=126.7
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
..++.++.+++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus 10 ~~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 10 ITYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TEEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred ceEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECC
Confidence 45777788887 788765 457899999999998777778888999999999999888 6666666788888888888
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCC-cChhccCCCCccEEEccCcccccc
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGD-IPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
+|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 8888877777788888888888888888766666677778888888888877653 466777777777777777777655
Q ss_pred ccccccCCCCCc
Q 043235 173 IPVQLNNLKSLE 184 (515)
Q Consensus 173 ~~~~l~~l~~L~ 184 (515)
.+..+..+++|+
T Consensus 165 ~~~~~~~l~~L~ 176 (276)
T 2z62_A 165 YCTDLRVLHQMP 176 (276)
T ss_dssp CGGGGHHHHTCT
T ss_pred CHHHhhhhhhcc
Confidence 555554444333
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-29 Score=266.07 Aligned_cols=405 Identities=15% Similarity=0.083 Sum_probs=236.5
Q ss_pred CCCCccEEeCcCCcCCC---CCc-----------hhHHhcccCCcEEECcCCcccccCCcccc-CCCCCCEEECcCC-cC
Q 043235 9 KYDKLRHLDISSNNFSG---KLP-----------ENLGIIFQKLIYLDMSKNNFEGNIPYSVG-EMKELTILDLSRN-NF 72 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~---~~p-----------~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n-~l 72 (515)
++++|++|+++++.... ..| ..+...+++|++|+|++|.+++..+..+. .+++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 46778888888875221 111 12233467888888888888766666664 6788888888888 45
Q ss_pred cccCchHHHhCCCCCCEEEccCccccccCCcccc----CCCCCCEEEcccCC--CCCc-CChhhhCCCCCcEEEcccC-c
Q 043235 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM----NLTDLGSLYLDNNH--FSGK-MTDGLLSSTLLRVLNVSNN-M 144 (515)
Q Consensus 73 ~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~--i~~~-~~~~~~~l~~L~~L~l~~n-~ 144 (515)
+......++..+++|++|++++|.+++..+..+. .+++|++|++++|. +... ....+..+++|++|++++| .
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 4222334445788888888888887654443333 56688888888886 2211 1112244688888888887 3
Q ss_pred CCCCcChhccCCCCccEEEccCc-------cccccccccccCCCCCcEE-eCCCCCCCCcC----CCCcccEEEcccCce
Q 043235 145 LSGDIPHWIGNFSVLSVLLMSEN-------YLQGNIPVQLNNLKSLEFI-DLSENSLISLS----NLSFVKHIYLQNNAI 212 (515)
Q Consensus 145 l~~~~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~l~~l~~L~~L-~L~~n~l~~l~----~l~~L~~L~L~~n~i 212 (515)
+. .++..+..+++|++|+++.+ .+.+ ++..+.++++|+.+ .+.+.....+. .+++|++|++++|.+
T Consensus 224 ~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 224 LE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp HH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred HH-HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 33 36666777888888885544 2332 23355666666666 34333322222 356677777777765
Q ss_pred eeecc-ccccCCCCccEEeccCCccCCcC-chhhhcCCCcCEEEccC---------ccCCCCCCcccc-CCCCCCEEECC
Q 043235 213 KGLIP-IALLRSSTLLTLDLRDNKLFGRI-PHQINERSNLHVLLLRG---------NYLQGRIPNQLC-QLRKLSIMDLS 280 (515)
Q Consensus 213 ~~~~~-~~~~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~---------n~i~~~~~~~~~-~l~~L~~L~L~ 280 (515)
++... ..+..+++|++|++++| +.... +.....+++|++|++.+ +.+++.....+. .+++|++|+++
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence 54322 22446677777777766 33221 22223466777776632 334322222222 36677777666
Q ss_pred CCcCcCCCCcccc-CCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccc
Q 043235 281 RNRLNGPIPSCLG-NVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSN 359 (515)
Q Consensus 281 ~n~i~~~~p~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (515)
.|.+++..+..+. .++.|+.+........ ... ....... .... ......
T Consensus 381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~-~~~------------------------~l~~~~~----~~~~-~~l~~~ 430 (594)
T 2p1m_B 381 CRQMTNAALITIARNRPNMTRFRLCIIEPK-APD------------------------YLTLEPL----DIGF-GAIVEH 430 (594)
T ss_dssp ESCCCHHHHHHHHHHCTTCCEEEEEESSTT-CCC------------------------TTTCCCT----HHHH-HHHHHH
T ss_pred cCCcCHHHHHHHHhhCCCcceeEeecccCC-Ccc------------------------cccCCch----hhHH-HHHHhh
Confidence 6666543322221 1222222111000000 000 0000000 0000 000134
Q ss_pred cccCCEEEcCCCcCccccccchhc-cccCCeeccCCccccccChhhh-cCccCCCeeeCCCCcccccCCc-cccCCCCCC
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQ-LQNIRALNLSNNLLSGAIPESF-SNLKMIESLDLSRNKLSGQIPP-QLTELNFLS 436 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~ 436 (515)
+++|++|+|++ .+++..+..+.. +++|++|+|++|.+++.....+ ..+++|++|+|++|++++.... ....+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 78899999987 676665555655 8899999999999876655555 6789999999999999754433 445689999
Q ss_pred EEecccCcccc
Q 043235 437 NFNVSYNNLSG 447 (515)
Q Consensus 437 ~L~Ls~N~l~~ 447 (515)
.|++++|+++.
T Consensus 510 ~L~l~~~~~~~ 520 (594)
T 2p1m_B 510 SLWMSSCSVSF 520 (594)
T ss_dssp EEEEESSCCBH
T ss_pred EEeeeCCCCCH
Confidence 99999998853
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-26 Score=213.33 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=41.5
Q ss_pred ccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCC
Q 043235 202 VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281 (515)
Q Consensus 202 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 281 (515)
+++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 44444444444444444444455555555555555444444444555555555555555544444455555555555555
Q ss_pred CcCc
Q 043235 282 NRLN 285 (515)
Q Consensus 282 n~i~ 285 (515)
|.+.
T Consensus 110 n~l~ 113 (276)
T 2z62_A 110 TNLA 113 (276)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 5444
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-28 Score=258.13 Aligned_cols=398 Identities=15% Similarity=0.096 Sum_probs=266.2
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCC-ccccc-CCccccCCCCCCEEECcCCcCcccCch---HHHhC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKN-NFEGN-IPYSVGEMKELTILDLSRNNFTGKLPR---PIVSS 83 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~l~~---~~~~~ 83 (515)
.+++|++|++++|.+++..+..+...+++|++|++++| .++.. .+..+.++++|++|++++|.+++..+. .+...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 47899999999999987777777644899999999999 55532 344455899999999999997743322 22246
Q ss_pred CCCCCEEEccCcc--cccc-CCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCc-------CCCCcChhc
Q 043235 84 CLSLDWLDLSNNN--FYGQ-LFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNM-------LSGDIPHWI 153 (515)
Q Consensus 84 l~~L~~L~L~~n~--i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~ 153 (515)
+++|++|++++|. +... ....+..+++|++|++++|......+..+..+++|++|+++.+. +. .++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH
Confidence 7899999999996 3211 11223457999999999983322367778889999999976553 33 234467
Q ss_pred cCCCCccEE-EccCccccccccccccCCCCCcEEeCCCCCCCC------cCCCCcccEEEcccCceeee-ccccccCCCC
Q 043235 154 GNFSVLSVL-LMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS------LSNLSFVKHIYLQNNAIKGL-IPIALLRSST 225 (515)
Q Consensus 154 ~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~------l~~l~~L~~L~L~~n~i~~~-~~~~~~~~~~ 225 (515)
.++++|+.+ .+.+... ..++..+..+++|+.|++++|.+.. +..+++|++|++++| +.+. .+.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 888889888 4444332 2344545567899999999998743 237788999999988 4432 2223335788
Q ss_pred ccEEeccC---------CccCCcCchhhh-cCCCcCEEEccCccCCCCCCcccc-CCCCCCEEECC--C----CcCcCCC
Q 043235 226 LLTLDLRD---------NKLFGRIPHQIN-ERSNLHVLLLRGNYLQGRIPNQLC-QLRKLSIMDLS--R----NRLNGPI 288 (515)
Q Consensus 226 L~~L~Ls~---------n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~--~----n~i~~~~ 288 (515)
|++|++++ +.+++.....+. .+++|+.|.++.|.+++.....+. .+++|+.|+++ + +.+++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 99998843 455543333333 478999998888888765555554 57899999998 3 4444221
Q ss_pred Cc-----cccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccC
Q 043235 289 PS-----CLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYM 363 (515)
Q Consensus 289 p~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 363 (515)
.. .+..++.|+.+.... . ... ......+..+++|
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~--------------------------------~--------l~~-~~~~~l~~~~~~L 458 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG--------------------------------L--------LTD-KVFEYIGTYAKKM 458 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS--------------------------------S--------CCH-HHHHHHHHHCTTC
T ss_pred hhhHHHHHHhhCCCccEEeecC--------------------------------c--------ccH-HHHHHHHHhchhc
Confidence 11 122233333221100 0 000 0000011237889
Q ss_pred CEEEcCCCcCccccccch-hccccCCeeccCCccccccChh-hhcCccCCCeeeCCCCcccccCCccc-cCCCCCCEEec
Q 043235 364 AGLDLSGNEFSGEIPWKI-GQLQNIRALNLSNNLLSGAIPE-SFSNLKMIESLDLSRNKLSGQIPPQL-TELNFLSNFNV 440 (515)
Q Consensus 364 ~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~L 440 (515)
++|+|++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEE
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 999999999987665555 6789999999999999755443 44568999999999999965444444 55778877777
Q ss_pred ccCcccccCC
Q 043235 441 SYNNLSGPIP 450 (515)
Q Consensus 441 s~N~l~~~~p 450 (515)
..+.-....|
T Consensus 539 ~~~~~~~~~~ 548 (594)
T 2p1m_B 539 DERGAPDSRP 548 (594)
T ss_dssp CSSSCGGGSC
T ss_pred cCCCcccccc
Confidence 7665544444
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=212.46 Aligned_cols=204 Identities=23% Similarity=0.197 Sum_probs=154.5
Q ss_pred cccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEE
Q 043235 176 QLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVL 253 (515)
Q Consensus 176 ~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 253 (515)
.+..++++++++++++.+..++ -.+.++.|++++|.+++..+..|..+++|++|++++|.+++..+ ...+++|++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred cccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 3567788889999988887776 24568888888888888877788888888888888888875433 2677788888
Q ss_pred EccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccc
Q 043235 254 LLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVE 333 (515)
Q Consensus 254 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (515)
++++|+++ .+|..+..+++|++|++++|++++..+..+..
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------------------------------------- 122 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------------------------------- 122 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT---------------------------------------
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC---------------------------------------
Confidence 88888887 56667777888888888888887554444432
Q ss_pred cccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCe
Q 043235 334 LHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIES 413 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 413 (515)
+++|++|+|++|++++..+..|..+++|++|+|++|+++...+..|..+++|++
T Consensus 123 --------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 123 --------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176 (290)
T ss_dssp --------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred --------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence 566777888888887666666777888888888888887666666777888888
Q ss_pred eeCCCCcccccCCccccCCCCCCEEecccCccccc
Q 043235 414 LDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGP 448 (515)
Q Consensus 414 L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 448 (515)
|+|++|+++ .+|..+..+.+|+.+++++|++...
T Consensus 177 L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp EECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred EECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 888888887 5666777777788888888877653
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=206.44 Aligned_cols=204 Identities=25% Similarity=0.263 Sum_probs=155.8
Q ss_pred CCcEEeCCCCCCCCcCC--CCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCcc
Q 043235 182 SLEFIDLSENSLISLSN--LSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNY 259 (515)
Q Consensus 182 ~L~~L~L~~n~l~~l~~--l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 259 (515)
..+.++++++.+..++. .+.+++|++++|.++++.+..|..+++|++|++++|+++...+..|..+++|++|++++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 34566666666655541 2457777777777777767778888888888888888886666667788888888888888
Q ss_pred CCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccc
Q 043235 260 LQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQD 339 (515)
Q Consensus 260 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
+++..+..|..+++|++|++++|.+++..+..+..
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------- 131 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------------------------------- 131 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT---------------------------------------------
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc---------------------------------------------
Confidence 88777777788888888888888887554444322
Q ss_pred cccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCC
Q 043235 340 QQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRN 419 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 419 (515)
+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 132 --------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 132 --------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp --------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 567888888888888666666788888888888888888777777888888888888888
Q ss_pred cccccCCccccCCCCCCEEecccCcccccCC
Q 043235 420 KLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 420 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
++++..+..+..+++|+.|++++|++....+
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 8886666678888888888888888876654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=204.69 Aligned_cols=203 Identities=22% Similarity=0.236 Sum_probs=168.8
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLD 91 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 91 (515)
..+.+++++++++ .+|..+ .+++++|++++|.+++..+.+|.++++|++|++++|.++ .++..+|..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 5789999999998 788765 468999999999999777778999999999999999998 88888888899999999
Q ss_pred ccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 92 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
+++|+++...+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999987777778889999999999999988877888889999999999999987666678888889999999988887
Q ss_pred cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFG 238 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~ 238 (515)
..+..|..+++|+.|++++|++ +++.+..+..+++|+.|++++|.+..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l-------------------~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQL-------------------KRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC-------------------SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eChhHhccCCCcCEEECCCCcC-------------------CcCCHHHhccccCCCEEEecCCCeeC
Confidence 6666676677666666666554 44445567778888888888888753
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=203.80 Aligned_cols=198 Identities=24% Similarity=0.219 Sum_probs=111.9
Q ss_pred ccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCC-----cCCCCcccEEEcccCceeeeccccccCCCCcc
Q 043235 153 IGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS-----LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLL 227 (515)
Q Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 227 (515)
+.+++++++++++++.++ .+|..+. ++++.|++++|.+.. +..++.|++|++++|.++++.+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 445556666666666665 3333332 456666666666633 23455666666666666654332 4556666
Q ss_pred EEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCC
Q 043235 228 TLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS 307 (515)
Q Consensus 228 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~ 307 (515)
+|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------- 146 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP------------- 146 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-------------
Confidence 6666666665 44555555666666666666666555555666666666666666665433322221
Q ss_pred cccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccC
Q 043235 308 EFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNI 387 (515)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 387 (515)
+++|+.|+|++|++++..+..|..+++|
T Consensus 147 ----------------------------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 147 ----------------------------------------------------TPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp ----------------------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred ----------------------------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 4455566666666664444445556666
Q ss_pred CeeccCCccccccChhhhcCccCCCeeeCCCCccc
Q 043235 388 RALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS 422 (515)
Q Consensus 388 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 422 (515)
++|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus 175 ~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66666666665 44555555556666666666654
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-25 Score=208.78 Aligned_cols=228 Identities=18% Similarity=0.186 Sum_probs=132.6
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEc
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYL 116 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 116 (515)
++..+++..+.+.+. .....+++|+.|++++|.++ .++. +..+++|++|++++|.+++ ...+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEEC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCC--chhhcCCCCCCEEEC
Confidence 344445555544422 23445566666666666655 4443 3456666666666666654 235566666666666
Q ss_pred ccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCc
Q 043235 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL 196 (515)
Q Consensus 117 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l 196 (515)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-- 170 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-- 170 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC--
Confidence 666666555555666666666666666666555555666666666666666666555555556666555555555432
Q ss_pred CCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCE
Q 043235 197 SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSI 276 (515)
Q Consensus 197 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 276 (515)
+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+ .+++|+.
T Consensus 171 -----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~ 226 (272)
T 3rfs_A 171 -----------------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRY 226 (272)
T ss_dssp -----------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHH
T ss_pred -----------------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHH
Confidence 2333344555666666666666665555555666666666666665542 3445666
Q ss_pred EECCCCcCcCCCCccccCCcc
Q 043235 277 MDLSRNRLNGPIPSCLGNVPF 297 (515)
Q Consensus 277 L~L~~n~i~~~~p~~~~~l~~ 297 (515)
++++.|.++|.+|..++.++.
T Consensus 227 l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 227 LSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHhCCCcccCcccccCC
Confidence 666666666666666655543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=204.20 Aligned_cols=224 Identities=17% Similarity=0.185 Sum_probs=147.3
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
+.++..+++..+.+.+... ... +++|++|++++|.++. ...+..+++|++|++++|.++ .++ .+..+++|++
T Consensus 18 ~~~l~~l~l~~~~~~~~~~--~~~-l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~ 89 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVT--QNE-LNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTY 89 (272)
T ss_dssp HHHHHHHHHTCSCTTSEEC--HHH-HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCE
T ss_pred HHHHHHHHhcCcccccccc--ccc-ccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCE
Confidence 3344455555665553222 222 5677777777777662 234666777777777777776 443 2466777777
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (515)
|++++|.+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 77777777666555667777777777777777766666666777777777777777766566666777777777777777
Q ss_pred cccccccccCCCCCcEEeCCCCCCCCc-----CCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhh
Q 043235 170 QGNIPVQLNNLKSLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244 (515)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~L~~n~l~~l-----~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 244 (515)
++..+..+..+++|+.|++++|++..+ ..+++|++|++++|.+.+ .+++|+.++++.|.+++.+|.++
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTT
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcc
Confidence 766555566777777777777776443 245667777777776653 34578888888888888888777
Q ss_pred hcCC
Q 043235 245 NERS 248 (515)
Q Consensus 245 ~~l~ 248 (515)
+.+.
T Consensus 243 ~~~~ 246 (272)
T 3rfs_A 243 GSVA 246 (272)
T ss_dssp SCBC
T ss_pred cccC
Confidence 6544
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-25 Score=218.34 Aligned_cols=258 Identities=19% Similarity=0.168 Sum_probs=170.8
Q ss_pred EEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCC----ccccCCC-CCCEEECcCCcCcccCchHHHhCC-----
Q 043235 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIP----YSVGEMK-ELTILDLSRNNFTGKLPRPIVSSC----- 84 (515)
Q Consensus 15 ~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~l~~~~~~~l----- 84 (515)
.+++++|++++.+|+.+.. .++|++|+|++|.+++..+ .++.+++ +|++|+|++|.+++..+.. +..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSC
T ss_pred ccccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccC
Confidence 4678889998777765543 5669999999999987666 7788888 8999999999988433333 3333
Q ss_pred CCCCEEEccCccccccCCccc----cCC-CCCCEEEcccCCCCCcCChhhh----C-CCCCcEEEcccCcCCCCcC----
Q 043235 85 LSLDWLDLSNNNFYGQLFPNY----MNL-TDLGSLYLDNNHFSGKMTDGLL----S-STLLRVLNVSNNMLSGDIP---- 150 (515)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~----~~l-~~L~~L~L~~n~i~~~~~~~~~----~-l~~L~~L~l~~n~l~~~~~---- 150 (515)
++|++|++++|.+++..+..+ ..+ ++|++|++++|++++..+..+. . .++|++|++++|.++....
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 889999999998876655543 344 7888889988888766555443 3 3588888888888875333
Q ss_pred hhccCCC-CccEEEccCccccccccccc----cCC-CCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccC-C
Q 043235 151 HWIGNFS-VLSVLLMSENYLQGNIPVQL----NNL-KSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLR-S 223 (515)
Q Consensus 151 ~~~~~l~-~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~-~ 223 (515)
..+..++ +|++|++++|++++..+..+ ..+ ++|++|++++|.+.... . ..++..+.. .
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~--------------~-~~l~~~l~~~~ 224 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS--------------Y-AELAYIFSSIP 224 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC--------------H-HHHHHHHHHSC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH--------------H-HHHHHHHhcCC
Confidence 3334554 78888888888876555433 333 46666666666654311 0 012233333 3
Q ss_pred CCccEEeccCCccCCcCc----hhhhcCCCcCEEEccCccCCCCC-------CccccCCCCCCEEECCCCcCcCCCC
Q 043235 224 STLLTLDLRDNKLFGRIP----HQINERSNLHVLLLRGNYLQGRI-------PNQLCQLRKLSIMDLSRNRLNGPIP 289 (515)
Q Consensus 224 ~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~-------~~~~~~l~~L~~L~L~~n~i~~~~p 289 (515)
++|++|++++|.+++..+ ..+..+++|++|+|++|.+.+.. +..+..+++|+.||+++|++.+..+
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 467777777777765443 22345577777777777744332 2345567778888888888765544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-24 Score=196.35 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=159.3
Q ss_pred CCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCc-CcccCchHHHhCCCCCCEEEccC-cccccc
Q 043235 23 FSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN-FTGKLPRPIVSSCLSLDWLDLSN-NNFYGQ 100 (515)
Q Consensus 23 l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~~~~l~~L~~L~L~~-n~i~~~ 100 (515)
++ .+|. + .++|++|++++|++++..+.+|.++++|++|++++|. ++ .++...|.++++|++|++++ |.++..
T Consensus 23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 65 7777 3 4588899999999887777788889999999999986 77 77776678888999999988 888877
Q ss_pred CCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCc---EEEcccC-cCCCCcChhccCCCCcc-EEEccCccccccccc
Q 043235 101 LFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLR---VLNVSNN-MLSGDIPHWIGNFSVLS-VLLMSENYLQGNIPV 175 (515)
Q Consensus 101 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~ 175 (515)
.+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| .++...+..|..+++|+ +|++++|+++...+.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh
Confidence 77788888899999999998885 454 77778887 9999998 88866667788888899 999999988844444
Q ss_pred cccCCCCCcEEeCCCCC-CCCc-----CCC-CcccEEEcccCceeeeccccccCCCCccEEeccCCc
Q 043235 176 QLNNLKSLEFIDLSENS-LISL-----SNL-SFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK 235 (515)
Q Consensus 176 ~l~~l~~L~~L~L~~n~-l~~l-----~~l-~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~ 235 (515)
.+.. ++|+.|++++|+ +..+ ..+ +.|++|++++|+++++.+. .+++|+.|+++++.
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 4544 788999999985 7544 356 7889999999998876544 56788889888763
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=213.90 Aligned_cols=246 Identities=19% Similarity=0.137 Sum_probs=166.0
Q ss_pred EEECcCCcccccCCccccCCCCCCEEECcCCcCcccCch----HHHhCCC-CCCEEEccCccccccCCccccCC-----C
Q 043235 40 YLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPR----PIVSSCL-SLDWLDLSNNNFYGQLFPNYMNL-----T 109 (515)
Q Consensus 40 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~ 109 (515)
++++++|.+++.+|..+...++|++|+|++|.++ ..+. ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4678888888777777777777888888888887 5554 4556777 78888888888876666666554 7
Q ss_pred CCCEEEcccCCCCCcCChhh----hCC-CCCcEEEcccCcCCCCcChhc----cC-CCCccEEEccCcccccccc----c
Q 043235 110 DLGSLYLDNNHFSGKMTDGL----LSS-TLLRVLNVSNNMLSGDIPHWI----GN-FSVLSVLLMSENYLQGNIP----V 175 (515)
Q Consensus 110 ~L~~L~L~~n~i~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~----~ 175 (515)
+|++|++++|++++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+..+ .
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 78888888888776555533 333 677777777777765544433 22 2467777777776664322 2
Q ss_pred cccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccc----cccCC-CCccEEeccCCccCCc----Cchhhhc
Q 043235 176 QLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPI----ALLRS-STLLTLDLRDNKLFGR----IPHQINE 246 (515)
Q Consensus 176 ~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~----~~~~~-~~L~~L~Ls~n~i~~~----~~~~~~~ 246 (515)
.+...+ +.|++|++++|.+++..+. .+..+ ++|++|+|++|.+.+. ++..+..
T Consensus 161 ~l~~~~------------------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 161 ILAAIP------------------ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp HHHTSC------------------TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred HHhcCC------------------ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 223332 1455555555555554443 34455 5999999999999863 3445555
Q ss_pred -CCCcCEEEccCccCCCCCC----ccccCCCCCCEEECCCCcCcCCCC-------ccccCCcccccccCC
Q 043235 247 -RSNLHVLLLRGNYLQGRIP----NQLCQLRKLSIMDLSRNRLNGPIP-------SCLGNVPFWREATDD 304 (515)
Q Consensus 247 -l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~p-------~~~~~l~~l~~~~~~ 304 (515)
.++|++|+|++|++++..+ ..+..+++|++|++++|.+.+..+ ..+..++.++.+...
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 4699999999999997554 345678999999999999654433 345566666665544
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-25 Score=220.97 Aligned_cols=254 Identities=21% Similarity=0.243 Sum_probs=158.6
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCC----ccccCCCCCCEEECcCCc---CcccCchHH------
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIP----YSVGEMKELTILDLSRNN---FTGKLPRPI------ 80 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~---l~~~l~~~~------ 80 (515)
+...++...+. .++..+.. +++|++|+|++|.++...+ ..+..+++|++|+|++|. +++.+|..+
T Consensus 12 ~~~~l~~~~~~-~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 12 KLDAITTEDEK-SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp EESSCCSHHHH-TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccCCCCHHHHH-HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 33333333343 56666665 6789999999988876533 447788889999888864 444455544
Q ss_pred HhCCCCCCEEEccCccccc----cCCccccCCCCCCEEEcccCCCCCcCChhhh----CC---------CCCcEEEcccC
Q 043235 81 VSSCLSLDWLDLSNNNFYG----QLFPNYMNLTDLGSLYLDNNHFSGKMTDGLL----SS---------TLLRVLNVSNN 143 (515)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~l~~n 143 (515)
+..+++|++|++++|.++. .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3567778888888887765 3455666777777777777777533333332 22 56666666666
Q ss_pred cCC-CCcC---hhccCCCCccEEEccCccccc-----cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCcee-
Q 043235 144 MLS-GDIP---HWIGNFSVLSVLLMSENYLQG-----NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIK- 213 (515)
Q Consensus 144 ~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~- 213 (515)
.++ ...+ ..+..+++|++|++++|++.. ..+..+..+++|+ +|+|++|.++
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~-------------------~L~Ls~n~l~~ 230 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK-------------------VLDLQDNTFTH 230 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC-------------------EEECCSSCCHH
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc-------------------EEECcCCCCCc
Confidence 665 2222 234455566666666665552 1222344444554 4555555553
Q ss_pred ---eeccccccCCCCccEEeccCCccCCc----Cchhhhc--CCCcCEEEccCccCCC----CCCccc-cCCCCCCEEEC
Q 043235 214 ---GLIPIALLRSSTLLTLDLRDNKLFGR----IPHQINE--RSNLHVLLLRGNYLQG----RIPNQL-CQLRKLSIMDL 279 (515)
Q Consensus 214 ---~~~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~--l~~L~~L~L~~n~i~~----~~~~~~-~~l~~L~~L~L 279 (515)
..++..+..+++|++|+|++|.+++. ++..+.. +++|++|+|++|.+++ .++..+ ..+++|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 33455667777788888888877654 3455533 7788888888888875 355555 55788888888
Q ss_pred CCCcCcCCC
Q 043235 280 SRNRLNGPI 288 (515)
Q Consensus 280 ~~n~i~~~~ 288 (515)
++|++++..
T Consensus 311 ~~N~l~~~~ 319 (386)
T 2ca6_A 311 NGNRFSEED 319 (386)
T ss_dssp TTSBSCTTS
T ss_pred cCCcCCcch
Confidence 888887554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=194.53 Aligned_cols=211 Identities=20% Similarity=0.213 Sum_probs=146.6
Q ss_pred ccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCC
Q 043235 202 VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281 (515)
Q Consensus 202 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 281 (515)
.++++++++.++.+ |..+. +.++.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34455555555543 22222 4677777777777777777777777888888888888777777777788888888888
Q ss_pred CcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccc
Q 043235 282 NRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN 361 (515)
Q Consensus 282 n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (515)
|++++..+..+.. ++
T Consensus 93 n~l~~~~~~~~~~-----------------------------------------------------------------l~ 107 (251)
T 3m19_A 93 NQLASLPLGVFDH-----------------------------------------------------------------LT 107 (251)
T ss_dssp SCCCCCCTTTTTT-----------------------------------------------------------------CT
T ss_pred CcccccChhHhcc-----------------------------------------------------------------cC
Confidence 8876544443322 56
Q ss_pred cCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecc
Q 043235 362 YMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVS 441 (515)
Q Consensus 362 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 441 (515)
+|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 77788888888886666667888899999999999987777788889999999999999987777788889999999999
Q ss_pred cCcccccCCCCcccC------CCCcccccCCCCCCCCccCCCCCCC
Q 043235 442 YNNLSGPIPDKEQFA------TFDDCSYKGNSALCGSMIKRKCSSA 481 (515)
Q Consensus 442 ~N~l~~~~p~~~~~~------~l~~~~~~gn~~~c~~~l~~~~~~~ 481 (515)
+|++.+.......+. ........|+. .|+.+-...|..+
T Consensus 188 ~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 188 GNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp SCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 999987744421111 11112233443 5666777778766
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-25 Score=218.39 Aligned_cols=240 Identities=21% Similarity=0.210 Sum_probs=177.2
Q ss_pred CCCCccEEeCcCCcCCCCCchhHH---hcccCCcEEECcCCcc---cccCCccc-------cCCCCCCEEECcCCcCcc-
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLG---IIFQKLIYLDMSKNNF---EGNIPYSV-------GEMKELTILDLSRNNFTG- 74 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~---~~~~~L~~L~L~~n~i---~~~~~~~~-------~~l~~L~~L~L~~n~l~~- 74 (515)
.+++|++|++++|.+++..+..+. ..+++|++|+|++|.+ ++.+|..+ ..+++|++|+|++|.+++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 478899999999999865444432 2378999999999644 44455444 789999999999999984
Q ss_pred ---cCchHHHhCCCCCCEEEccCccccccCCcccc----CC---------CCCCEEEcccCCCCC-cCC---hhhhCCCC
Q 043235 75 ---KLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM----NL---------TDLGSLYLDNNHFSG-KMT---DGLLSSTL 134 (515)
Q Consensus 75 ---~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l---------~~L~~L~L~~n~i~~-~~~---~~~~~l~~ 134 (515)
.++..+ ..+++|++|++++|.++...+..+. .+ ++|++|++++|+++. ..+ ..+..+++
T Consensus 110 ~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 110 AQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp THHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 255444 7799999999999999754444443 34 899999999999973 333 46778899
Q ss_pred CcEEEcccCcCCC-----CcChhccCCCCccEEEccCcccc----ccccccccCCCCCcEEeCCCCCCCCcCCCCcccEE
Q 043235 135 LRVLNVSNNMLSG-----DIPHWIGNFSVLSVLLMSENYLQ----GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHI 205 (515)
Q Consensus 135 L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L 205 (515)
|++|++++|.++. ..+..+..+++|++|++++|.++ ..+|..+..+++|+.|++++|.+.....
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~------- 261 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA------- 261 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH-------
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH-------
Confidence 9999999999973 23447889999999999999996 5677778888888888888887643210
Q ss_pred EcccCceeeecccccc--CCCCccEEeccCCccCC----cCchhh-hcCCCcCEEEccCccCCCCC
Q 043235 206 YLQNNAIKGLIPIALL--RSSTLLTLDLRDNKLFG----RIPHQI-NERSNLHVLLLRGNYLQGRI 264 (515)
Q Consensus 206 ~L~~n~i~~~~~~~~~--~~~~L~~L~Ls~n~i~~----~~~~~~-~~l~~L~~L~L~~n~i~~~~ 264 (515)
..++..+. .+++|++|+|++|.+++ .+|..+ ..+++|++|++++|++++..
T Consensus 262 --------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 --------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp --------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred --------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 00233442 36677777777777765 355555 45677777777777777554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=191.40 Aligned_cols=180 Identities=21% Similarity=0.245 Sum_probs=160.4
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEE
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWL 90 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L 90 (515)
...++++++++.++ .+|..+ .+++++|++++|.+++..+.+|.++++|++|+|++|.++ .++...+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEE
Confidence 45789999999998 888776 468999999999999888889999999999999999998 6777777889999999
Q ss_pred EccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 91 DLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 91 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++++|+++...+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++.
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99999999887788899999999999999999877777889999999999999999777778999999999999999999
Q ss_pred ccccccccCCCCCcEEeCCCCCCCC
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLIS 195 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~~ 195 (515)
+..+..+..+++|+.|++++|++..
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 8777788888999999988888743
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-23 Score=189.29 Aligned_cols=205 Identities=17% Similarity=0.177 Sum_probs=147.8
Q ss_pred ccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCcc-ccccCCccccCCCCCCEEEccc-CCCCCcC
Q 043235 48 FEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNN-FYGQLFPNYMNLTDLGSLYLDN-NHFSGKM 125 (515)
Q Consensus 48 i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~ 125 (515)
++ .+|. +. ++|++|++++|+++ .++...|..+++|++|++++|+ ++...+..|.++++|++|++++ |+++...
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cc-ccCC-CC--CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 55 4555 33 47889999999888 7777667888899999999886 8777667888888999999988 8888777
Q ss_pred ChhhhCCCCCcEEEcccCcCCCCcChhccCCCCcc---EEEccCc-cccccccccccCCCCCc-EEeCCCCCCCCcCCCC
Q 043235 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS---VLLMSEN-YLQGNIPVQLNNLKSLE-FIDLSENSLISLSNLS 200 (515)
Q Consensus 126 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~l~~l~ 200 (515)
+..|..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ .|++++|++..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~----- 170 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS----- 170 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-----
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-----
Confidence 7788888888999998888885 555 77777777 8888888 88766666677777777 77776665543
Q ss_pred cccEEEcccCceeeeccccccCCCCccEEeccCCc-cCCcCchhhhcC-CCcCEEEccCccCCCCCCccccCCCCCCEEE
Q 043235 201 FVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK-LFGRIPHQINER-SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMD 278 (515)
Q Consensus 201 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 278 (515)
+.+..+.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+
T Consensus 171 --------------i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~ 232 (239)
T 2xwt_C 171 --------------VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELI 232 (239)
T ss_dssp --------------ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEE
T ss_pred --------------cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceee
Confidence 33333433 566667777763 665555566666 6777777777777643322 456677777
Q ss_pred CCCC
Q 043235 279 LSRN 282 (515)
Q Consensus 279 L~~n 282 (515)
++++
T Consensus 233 l~~~ 236 (239)
T 2xwt_C 233 ARNT 236 (239)
T ss_dssp CTTC
T ss_pred ccCc
Confidence 6665
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=198.15 Aligned_cols=223 Identities=19% Similarity=0.181 Sum_probs=182.7
Q ss_pred CCCCCEEECcCCcCcccCchHH--HhCCCCCCEEEccCccccccCCccc--cCCCCCCEEEcccCCCCCcCC----hhhh
Q 043235 59 MKELTILDLSRNNFTGKLPRPI--VSSCLSLDWLDLSNNNFYGQLFPNY--MNLTDLGSLYLDNNHFSGKMT----DGLL 130 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~ 130 (515)
...++.+.+.++.+....-..+ +..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3457888998887752111111 1235679999999999998888887 899999999999999986544 3456
Q ss_pred CCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc--c--cccccCCCCCcEEeCCCCCCCCcC--------C
Q 043235 131 SSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN--I--PVQLNNLKSLEFIDLSENSLISLS--------N 198 (515)
Q Consensus 131 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~L~~n~l~~l~--------~ 198 (515)
.+++|++|++++|.+.+..+..++.+++|++|++++|++.+. . +..+..+++|++|++++|++..+. .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 789999999999999988888999999999999999997642 2 233468899999999999997543 4
Q ss_pred CCcccEEEcccCceeeeccccccCC---CCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCC
Q 043235 199 LSFVKHIYLQNNAIKGLIPIALLRS---STLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLS 275 (515)
Q Consensus 199 l~~L~~L~L~~n~i~~~~~~~~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 275 (515)
++.|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 5899999999999999877777776 69999999999998 5566664 7999999999999964 33 67889999
Q ss_pred EEECCCCcCcC
Q 043235 276 IMDLSRNRLNG 286 (515)
Q Consensus 276 ~L~L~~n~i~~ 286 (515)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999864
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=199.02 Aligned_cols=212 Identities=19% Similarity=0.290 Sum_probs=137.8
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLD 91 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 91 (515)
++..+.+..+.+++.++. .. +++|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++|+
T Consensus 20 ~~~~~~l~~~~~~~~~~~--~~-l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~ 91 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTVTQ--AD-LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELE 91 (308)
T ss_dssp HHHHHHTTCSSTTSEECH--HH-HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEE
T ss_pred HHHHHHhCCCCcCceecH--HH-cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEE
Confidence 334445555555532322 22 5677777777777773 33 5777777777777777777 5555 56777777777
Q ss_pred ccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 92 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
+++|.+++. ..+..+++|++|++++|++++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 92 L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 92 LSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence 777777642 3567777777777777777643 2 36677777777777777764433 6666777777777777664
Q ss_pred cccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLH 251 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 251 (515)
..+ +..+++|+.|++++|++ ++..+ +..+++|++|++++|++++.. .+..+++|+
T Consensus 166 ~~~--l~~l~~L~~L~l~~n~l-------------------~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~ 220 (308)
T 1h6u_A 166 LTP--LANLSKLTTLKADDNKI-------------------SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLF 220 (308)
T ss_dssp CGG--GTTCTTCCEEECCSSCC-------------------CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCC
T ss_pred Chh--hcCCCCCCEEECCCCcc-------------------CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCC
Confidence 322 55555555555555554 43322 566677888888888776544 367777888
Q ss_pred EEEccCccCCC
Q 043235 252 VLLLRGNYLQG 262 (515)
Q Consensus 252 ~L~L~~n~i~~ 262 (515)
.|++++|++++
T Consensus 221 ~L~l~~N~i~~ 231 (308)
T 1h6u_A 221 IVTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEccCCeeec
Confidence 88888888763
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=199.89 Aligned_cols=224 Identities=18% Similarity=0.167 Sum_probs=137.5
Q ss_pred CccEEeCcCCcCCCC----CchhHHhcccCCcEEECcCCcccccCCccc--cCCCCCCEEECcCCcCcccCc---hHHHh
Q 043235 12 KLRHLDISSNNFSGK----LPENLGIIFQKLIYLDMSKNNFEGNIPYSV--GEMKELTILDLSRNNFTGKLP---RPIVS 82 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~----~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~l~---~~~~~ 82 (515)
.++.+.+.++.++.. +...+ . +++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ...+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~-~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVL-A-YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHH-H-HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhc-c-cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 456666666665421 11111 1 3567777777777777777666 777777777777777764333 12223
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCc--C--ChhhhCCCCCcEEEcccCcCCCCcCh----hcc
Q 043235 83 SCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK--M--TDGLLSSTLLRVLNVSNNMLSGDIPH----WIG 154 (515)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~ 154 (515)
.+++|++|++++|++++..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.++ ..+. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 567777777777777766666777777777777777776431 1 122345667777777777775 2222 245
Q ss_pred CCCCccEEEccCccccccccccccCC---CCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEec
Q 043235 155 NFSVLSVLLMSENYLQGNIPVQLNNL---KSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDL 231 (515)
Q Consensus 155 ~l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L 231 (515)
.+++|++|++++|++.+..|..+..+ ++|++|++++| +++.+ |..+. ++|++|++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-------------------~l~~l-p~~~~--~~L~~L~L 279 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-------------------GLEQV-PKGLP--AKLRVLDL 279 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-------------------CCCSC-CSCCC--SCCSCEEC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-------------------CCCch-hhhhc--CCCCEEEC
Confidence 56677777777777766555555444 35555555554 44432 33332 57788888
Q ss_pred cCCccCCcCchhhhcCCCcCEEEccCccCCC
Q 043235 232 RDNKLFGRIPHQINERSNLHVLLLRGNYLQG 262 (515)
Q Consensus 232 s~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 262 (515)
++|++++. |. +..+++|+.|++++|++++
T Consensus 280 s~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 88887754 32 5667788888888887763
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-23 Score=199.90 Aligned_cols=243 Identities=18% Similarity=0.154 Sum_probs=175.5
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE-EEc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW-LDL 92 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~-L~L 92 (515)
++++.++++++ .+|..+ ++++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|..+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67899999998 889876 4689999999999997666789999999999999999865788888888888775 566
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEccc-CcCCCCcChhccCCC-CccEEEccCcccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSN-NMLSGDIPHWIGNFS-VLSVLLMSENYLQ 170 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~ 170 (515)
++|+++...+..|.++++|++|++++|++....+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67888877788888889999999999888866666666666777787765 456544444555554 4667777777776
Q ss_pred ccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCc
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNL 250 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 250 (515)
...+..+ ...+|+++++++ +|.++.+.+.+|..+++|++|++++|+|+...+.. +.+|
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~------------------~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L 225 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSD------------------NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENL 225 (350)
T ss_dssp EECTTSS-TTEEEEEEECTT------------------CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTC
T ss_pred CCChhhc-cccchhHHhhcc------------------CCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccc
Confidence 4333322 333444444432 34556666667888889999999999988554444 4456
Q ss_pred CEEEccCccCCCCCCccccCCCCCCEEECCCCc
Q 043235 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNR 283 (515)
Q Consensus 251 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 283 (515)
+.|.+.++.--..+| .+..+++|+.+++.++.
T Consensus 226 ~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 226 KKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred hHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 666655544333555 47788999999987653
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-24 Score=205.85 Aligned_cols=256 Identities=20% Similarity=0.228 Sum_probs=179.1
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcc--cCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCccc-CchHHHhCCCCC
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIF--QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGK-LPRPIVSSCLSL 87 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-l~~~~~~~l~~L 87 (515)
..++.++++++.+. +..+.. + +++++|++++|.+.+..+. +..+++|++|++++|.+++. ++ ..+..+++|
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH-HHHTTBCCC
T ss_pred hhheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH-HHHhhCCCC
Confidence 34788888888776 334433 4 7889999999888865554 56788899999998887743 44 345778888
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEcccC-CCCCc-CChhhhCCCCCcEEEcccC-cCCCC-cChhccCCC-CccEE
Q 043235 88 DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNN-HFSGK-MTDGLLSSTLLRVLNVSNN-MLSGD-IPHWIGNFS-VLSVL 162 (515)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L 162 (515)
++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 88888888887777777888888888888888 56642 4555677888888888888 77643 456677777 88888
Q ss_pred EccCcc--cc-ccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCc-cCC
Q 043235 163 LMSENY--LQ-GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK-LFG 238 (515)
Q Consensus 163 ~l~~n~--l~-~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~-i~~ 238 (515)
++++|. ++ +.++..+..+++|+.|++++|.. +++..+..+..+++|++|++++|. +..
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~------------------l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM------------------LKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT------------------CCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc------------------CCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 888873 43 33455555666666666666541 344445567777888888888884 333
Q ss_pred cCchhhhcCCCcCEEEccCccCCCCCCccccCC-CCCCEEECCCCcCcCCCCccccC
Q 043235 239 RIPHQINERSNLHVLLLRGNYLQGRIPNQLCQL-RKLSIMDLSRNRLNGPIPSCLGN 294 (515)
Q Consensus 239 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~i~~~~p~~~~~ 294 (515)
.....+..+++|+.|++++| ++.. .+..+ .+++.|++++|.+++..|..++.
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 33335777888999999888 4432 23322 23666668899998888876654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=193.82 Aligned_cols=194 Identities=24% Similarity=0.365 Sum_probs=157.8
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
.+.+++|++|++++|.++ .++ .+.. +++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~-l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQY-LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTT
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhc-cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh--hcCCCC
Confidence 345789999999999998 677 4544 7999999999999995444 999999999999999998 6663 688999
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|++|++++|++++. ..+..+++|++|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++
T Consensus 109 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 109 IKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp CCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence 99999999999864 348999999999999999986543 8899999999999999986443 89999999999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
|.+++..+ +..+++|+.|++++|++..+ . .+..+++|+.|++++|+++
T Consensus 183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~-------------------~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 183 NKISDISP--LASLPNLIEVHLKNNQISDV-------------------S--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECTTSCCCBC-------------------G--GGTTCTTCCEEEEEEEEEE
T ss_pred CccCcChh--hcCCCCCCEEEccCCccCcc-------------------c--cccCCCCCCEEEccCCeee
Confidence 99986543 67777777777777766433 2 2455566666666666664
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=203.60 Aligned_cols=201 Identities=19% Similarity=0.143 Sum_probs=116.8
Q ss_pred CCCCEEECcCCcCcccCchHHHhCC--CCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCc-CChhhhCCCCCc
Q 043235 60 KELTILDLSRNNFTGKLPRPIVSSC--LSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK-MTDGLLSSTLLR 136 (515)
Q Consensus 60 ~~L~~L~L~~n~l~~~l~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~ 136 (515)
..++.++++++.+. ...+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34678888877665 2223444 6777888887777655433 44567777777777766543 455566666677
Q ss_pred EEEcccCcCCCCcChhccCCCCccEEEccCc-ccccc-ccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceee
Q 043235 137 VLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN-YLQGN-IPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKG 214 (515)
Q Consensus 137 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~ 214 (515)
+|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++|. .+++
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~------------------~l~~ 183 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF------------------DFTE 183 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT------------------TCCH
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC------------------CcCh
Confidence 7777766666555556666666666666666 44432 33334445555555555440 2332
Q ss_pred e-ccccccCCC-CccEEeccCC--ccC-CcCchhhhcCCCcCEEEccCcc-CCCCCCccccCCCCCCEEECCCCc
Q 043235 215 L-IPIALLRSS-TLLTLDLRDN--KLF-GRIPHQINERSNLHVLLLRGNY-LQGRIPNQLCQLRKLSIMDLSRNR 283 (515)
Q Consensus 215 ~-~~~~~~~~~-~L~~L~Ls~n--~i~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~ 283 (515)
. .+..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|.
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 1 233445555 6666666666 333 2334455556666666666666 554455555666666666666664
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=189.84 Aligned_cols=204 Identities=15% Similarity=0.095 Sum_probs=162.0
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccC-CccccCCCCCCE-EECcCCcCcccCchH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNI-PYSVGEMKELTI-LDLSRNNFTGKLPRP 79 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~-L~L~~n~l~~~l~~~ 79 (515)
|.++|..-.+++++|+|++|+|+ .+|...+..+++|++|+|++|++.+.+ +.+|.+++++++ +.++.|+++ .++..
T Consensus 21 Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPE 98 (350)
T ss_dssp CCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTT
T ss_pred CCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCch
Confidence 56777766789999999999999 888776666899999999999986544 467899999875 666779998 78888
Q ss_pred HHhCCCCCCEEEccCccccccCCccccCCCCCCEEEccc-CCCCCcCChhhhCCC-CCcEEEcccCcCCCCcChhccCCC
Q 043235 80 IVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN-NHFSGKMTDGLLSST-LLRVLNVSNNMLSGDIPHWIGNFS 157 (515)
Q Consensus 80 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~ 157 (515)
.|..+++|++|++++|+++...+..+....++..|++.+ +++....+..|..+. .+++|++++|+++. ++.......
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~ 177 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGT 177 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhcccc
Confidence 889999999999999999877776777788889999966 577766666777664 68999999999984 555555667
Q ss_pred CccEEEccC-ccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcc
Q 043235 158 VLSVLLMSE-NYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQ 208 (515)
Q Consensus 158 ~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~ 208 (515)
+|+++++.+ |.++...+..|..+++|++|++++|+++.++ .+..|++|.+.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc
Confidence 899999985 6777555567888999999999988887664 24444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-21 Score=171.09 Aligned_cols=178 Identities=22% Similarity=0.232 Sum_probs=95.9
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|+++ .++...|..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 45666666666 566544 346677777777666555555666666666666666666 5555555556666666666
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccc
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNI 173 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (515)
+|++++..+..|.++++|++|++++|++++..+..+..+++ |++|++++|++++..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~------------------------L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ------------------------LKDLRLYQNQLKSVP 140 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT------------------------CCEEECCSSCCSCCC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc------------------------CCEEECCCCccceeC
Confidence 66665444444555555555555555555444434444444 444444444444333
Q ss_pred cccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccC
Q 043235 174 PVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLR 222 (515)
Q Consensus 174 ~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 222 (515)
+..+..+++|+.|++++|.+. ..++.|+.|++..|++++.+|..++.
T Consensus 141 ~~~~~~l~~L~~L~l~~N~~~--~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 141 DGVFDRLTSLQYIWLHDNPWD--CTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp TTTTTTCTTCCEEECCSCCBC--CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred HHHhccCCCccEEEecCCCee--cCCCCHHHHHHHHHhCCceeeccCcc
Confidence 333444555555555554332 12233444445555555555544443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-21 Score=171.35 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=151.5
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIV 81 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~ 81 (515)
+..+|....++|++|++++|+++ .++...+..+++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+
T Consensus 19 l~~~p~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 96 (208)
T 2o6s_A 19 RTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVF 96 (208)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccCCCCCCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHh
Confidence 45677777889999999999999 666665555899999999999999777777899999999999999999 7888777
Q ss_pred hCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccE
Q 043235 82 SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSV 161 (515)
Q Consensus 82 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 161 (515)
..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|+.
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~ 169 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRY 169 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHH
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHH
Confidence 899999999999999998777778999999999999999998777778999999999999997764 4568999
Q ss_pred EEccCccccccccccccCCCC
Q 043235 162 LLMSENYLQGNIPVQLNNLKS 182 (515)
Q Consensus 162 L~l~~n~l~~~~~~~l~~l~~ 182 (515)
|+++.|++++.+|..++.++.
T Consensus 170 L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 170 LSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHHhCCceeeccCccccC
Confidence 999999999999988776654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=184.48 Aligned_cols=175 Identities=25% Similarity=0.225 Sum_probs=141.1
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCcccc-CCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVG-EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
+.+++++++++ .+|..+ .+.+++|+|++|.|++..+..|. ++++|++|+|++|+++ .++...|..+++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 68899999998 788765 45789999999999987777787 8999999999999998 677666788999999999
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhc---cCCCCccEEEccCccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWI---GNFSVLSVLLMSENYL 169 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l 169 (515)
++|+++...+..|.++++|++|+|++|+++...+..|..+++|++|++++|.++...+..| ..+++|+.|++++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9999988777788889999999999999988778888888999999999998886544445 5678888888888888
Q ss_pred cccccccccCCCC--CcEEeCCCCCC
Q 043235 170 QGNIPVQLNNLKS--LEFIDLSENSL 193 (515)
Q Consensus 170 ~~~~~~~l~~l~~--L~~L~L~~n~l 193 (515)
+...+..+..++. ++.|++++|.+
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CccCHHHhhhccHhhcceEEecCCCc
Confidence 8655556666665 35666666655
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=176.45 Aligned_cols=192 Identities=20% Similarity=0.312 Sum_probs=128.4
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
+.++..+.+..+.+++..+. .. +++|++|++++|.++.. + .+..+++|++|++++|.++ .++. +..+++|++
T Consensus 23 l~~~~~~~l~~~~~~~~~~~--~~-l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~ 94 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAVTQ--NE-LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGW 94 (291)
T ss_dssp HHHHHHHHTTCSCTTSEECH--HH-HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred HHHHHHHHhcCCCcccccch--hh-cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCE
Confidence 33444455666666533222 22 56788888888877743 3 4777788888888888887 5555 567788888
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (515)
|++++|.+++ ...+..+++|++|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++
T Consensus 95 L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 95 LFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECCSSCCCC--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCC--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 8888887765 23477777888888888877743 4567777778888877777754 4577777777777777777
Q ss_pred cccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCC
Q 043235 170 QGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFG 238 (515)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~ 238 (515)
.+..+ +..+++|+.|++++|++. ++ + .+..+++|+.|++++|+++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~-------------------~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHIS-------------------DL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCC-------------------BC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCC-------------------CC-h-hhccCCCCCEEECcCCcccC
Confidence 75433 666666666666666553 32 1 35566677777777777654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-20 Score=166.64 Aligned_cols=152 Identities=19% Similarity=0.265 Sum_probs=104.4
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCC-ccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIP-YSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
+.+++++|.++ .+|..+ .+.+++|+|++|.+++..+ ..|.++++|++|+|++|.++ .++...|..+++|++|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEEC
Confidence 57777777777 677655 3456777777777775533 44677777777777777777 555555567777777777
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+.
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777776666666677777777777777777666666666677777777777776655666666666666666666655
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-20 Score=165.65 Aligned_cols=152 Identities=19% Similarity=0.226 Sum_probs=105.3
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
+.++++++.++ .+|..+ .++|++|++++|.|++..+..|..+++|++|+|++|+++ .++...|.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence 56778888777 677655 357788888888777666667777777777777777777 4544445677777777777
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccc
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (515)
+|+++...+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77777555555666777777777777777666666666667777777777666555555666666666666666554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=172.17 Aligned_cols=171 Identities=22% Similarity=0.330 Sum_probs=145.6
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
...+++|+.|++++|.++ .++. +.. +++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTT
T ss_pred hhhcCcccEEEccCCCcc-cChh-Hhc-CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCC
Confidence 345788999999999998 6664 444 7999999999999996544 999999999999999998 6665 688999
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence 99999999999863 6789999999999999999865 678999999999999999997655 89999999999999
Q ss_pred ccccccccccccCCCCCcEEeCCCCCC
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l 193 (515)
|.+++. + .+..+++|+.|++++|++
T Consensus 188 N~i~~l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 188 NHISDL-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp SCCCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred CcCCCC-h-hhccCCCCCEEECcCCcc
Confidence 999853 3 366777777666666654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=164.19 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=123.4
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-+.++++++.++ .+|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|...|..+++|++|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEEC
Confidence 467888888887 888765 478999999999998877888888999999999999887 788777788888888888
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
++|+++...+..|..+++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|.+..
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 888888766666788888888888888887 566777778888888888888876666667777777777777777663
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-20 Score=190.55 Aligned_cols=194 Identities=19% Similarity=0.308 Sum_probs=141.8
Q ss_pred CCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 6 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
|...+..+..+.++.+.+.+.++ ... +++|++|++++|.+.. ++ .+..+++|++|+|++|.++ .++. +..++
T Consensus 16 pd~~l~~l~~l~l~~~~i~~~~~--~~~-L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~ 87 (605)
T 1m9s_A 16 PDDAFAETIKDNLKKKSVTDAVT--QNE-LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLK 87 (605)
T ss_dssp CSHHHHHHHHHHTTCSCTTSEEC--HHH-HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG--GGGCT
T ss_pred CcHHHHHHHHHhccCCCcccccc--hhc-CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh--hccCC
Confidence 33445556666777777764333 222 6788888888888874 33 5788888888888888887 5655 57788
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEcc
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (515)
+|++|+|++|.+++ ++.+..+++|++|+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|+
T Consensus 88 ~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 88 NLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TCCEEECCSSCCCC--CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred CCCEEECcCCCCCC--ChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 88888888888875 34678888888888888888753 4577888888888888888754 567788888888888
Q ss_pred CccccccccccccCCCCCcEEeCCCCCCCCcC---CCCcccEEEcccCceeee
Q 043235 166 ENYLQGNIPVQLNNLKSLEFIDLSENSLISLS---NLSFVKHIYLQNNAIKGL 215 (515)
Q Consensus 166 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~---~l~~L~~L~L~~n~i~~~ 215 (515)
+|.+.+..| +..+++|+.|+|++|++..++ .+++|+.|+|++|.+.+.
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence 888886555 777888888888888775443 556666677776666654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=182.98 Aligned_cols=192 Identities=29% Similarity=0.402 Sum_probs=107.5
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEc
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYL 116 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 116 (515)
+|++|++++|.+++ +|..+ .++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 66677777776664 44444 256777777777766 666 235667777777776665 333 443 6677777
Q ss_pred ccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCc
Q 043235 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL 196 (515)
Q Consensus 117 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l 196 (515)
++|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|++..+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence 7776664 333 45666777777776664 343 45666677777776664 444 43 5666666666665544
Q ss_pred CCCC-cccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccC
Q 043235 197 SNLS-FVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQ 270 (515)
Q Consensus 197 ~~l~-~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 270 (515)
+.+. +| +.....|+.|++++|+|+ .+|..+..+++|+.|+|++|++++..|..+..
T Consensus 196 p~~~~~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PAVPVRN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCCC-------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhHHHhh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 3211 22 000111255555555555 34444555555555555555555554444443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=162.26 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=132.2
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 117 (515)
-+++++++|.++ .+|..+. ..+++|++++|.+++..+..+|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 468999999998 4676553 4578999999999844355667889999999999999998877789999999999999
Q ss_pred cCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 118 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
+|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999888888999999999999999999888888999999999999999999887888888888888888888764
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=161.72 Aligned_cols=152 Identities=21% Similarity=0.250 Sum_probs=125.1
Q ss_pred cEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEccc
Q 043235 39 IYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118 (515)
Q Consensus 39 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 118 (515)
+.++++++.++ .+|..+. ++|++|++++|.++ .++...|..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 67888888888 4666554 68889999999888 67766678888899999999988887788888888899999999
Q ss_pred CCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 119 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
|+++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8888766667788888888888888888877888888888888888888888777777888888888888877764
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=183.77 Aligned_cols=188 Identities=24% Similarity=0.312 Sum_probs=120.7
Q ss_pred CCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEc
Q 043235 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNV 140 (515)
Q Consensus 61 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 140 (515)
+|++|++++|.++ .+|..+ .++|++|++++|.++. +| ..+++|++|++++|++++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 6666666666666 466544 2556666666666652 33 334566666666666654 333 332 5556666
Q ss_pred ccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccc
Q 043235 141 SNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIAL 220 (515)
Q Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~ 220 (515)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.++++ |. +
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----------------------~l~~L~~L~Ls~N~L~~l-p~-l 178 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----------------------LPTSLEVLSVRNNQLTFL-PE-L 178 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----------------------CCTTCCEEECCSSCCSCC-CC-C
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----------------------cCCCcCEEECCCCCCCCc-ch-h
Confidence 6655553 333 34555555555555543 222 234566666666666663 33 4
Q ss_pred cCCCCccEEeccCCccCCcCchhhhcCCCc-------CEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCcccc
Q 043235 221 LRSSTLLTLDLRDNKLFGRIPHQINERSNL-------HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLG 293 (515)
Q Consensus 221 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~ 293 (515)
. ++|++|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|++++..|..+.
T Consensus 179 ~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp C--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred h--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 4 78999999999998 4555 544 67 99999999999 5787788899999999999999988887776
Q ss_pred CCc
Q 043235 294 NVP 296 (515)
Q Consensus 294 ~l~ 296 (515)
.+.
T Consensus 252 ~l~ 254 (571)
T 3cvr_A 252 QQT 254 (571)
T ss_dssp HHH
T ss_pred Hhh
Confidence 644
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=177.12 Aligned_cols=167 Identities=25% Similarity=0.235 Sum_probs=146.3
Q ss_pred CCCCCCCCCCCccEEeCcCCcCCCCCchhHHh-cccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHH
Q 043235 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGI-IFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPI 80 (515)
Q Consensus 2 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~-~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~ 80 (515)
|..+|..-.+.++.|++++|+++ .++...+. .+++|++|+|++|.|++..+.+|.++++|++|+|++|+++ .++...
T Consensus 30 l~~iP~~~~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 107 (361)
T 2xot_A 30 LPNVPQSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFL 107 (361)
T ss_dssp CSSCCSSCCTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTT
T ss_pred cCccCccCCCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHH
Confidence 56677777788999999999999 56555543 4899999999999999888889999999999999999998 788877
Q ss_pred HhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhh---hCCCCCcEEEcccCcCCCCcChhccCCC
Q 043235 81 VSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGL---LSSTLLRVLNVSNNMLSGDIPHWIGNFS 157 (515)
Q Consensus 81 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 157 (515)
|..+++|++|+|++|+|+...+..|.++++|++|+|++|+++...+..| ..+++|++|++++|.++...+..+..++
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 187 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence 8999999999999999998888999999999999999999997655555 5789999999999999977667888888
Q ss_pred C--ccEEEccCcccc
Q 043235 158 V--LSVLLMSENYLQ 170 (515)
Q Consensus 158 ~--L~~L~l~~n~l~ 170 (515)
. ++.|++++|.+.
T Consensus 188 ~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 188 AWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHTTEECCSSCEE
T ss_pred HhhcceEEecCCCcc
Confidence 7 489999999886
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=160.85 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=112.3
Q ss_pred ccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCC
Q 043235 226 LLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDD 305 (515)
Q Consensus 226 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~ 305 (515)
.+.++.+++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|++++|.+....+..+..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 455666666665 3444332 57777777777777666777777777777777777775433333222
Q ss_pred CCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccc
Q 043235 306 SSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQ 385 (515)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 385 (515)
+++|++|+|++|++++..+..|..++
T Consensus 87 ------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 87 ------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp ------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ------------------------------------------------------CCCcCEEECCCCcCCccChhHhCcch
Confidence 56677777777777766666677788
Q ss_pred cCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCC
Q 043235 386 NIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 386 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 450 (515)
+|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus 113 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 113 HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8888888888887 667778888888888888888886666778888888888888888887655
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=182.29 Aligned_cols=196 Identities=20% Similarity=0.255 Sum_probs=129.0
Q ss_pred CCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEc
Q 043235 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNV 140 (515)
Q Consensus 61 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 140 (515)
++..+.+..+.+...++ +..+++|+.|++++|.+... +.+..+++|+.|+|++|++.+..+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34455666666663333 24567788888888877643 357777888888888887775443 677777888888
Q ss_pred ccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccc
Q 043235 141 SNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIAL 220 (515)
Q Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~ 220 (515)
++|.+++ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|++ +++ ..+
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l-------------------~~l--~~l 149 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI-------------------TDI--TVL 149 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCC-------------------CCC--GGG
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCcc-------------------CCc--hhh
Confidence 8777764 23 567777777777777777642 3355566666666665554 433 345
Q ss_pred cCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccc
Q 043235 221 LRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCL 292 (515)
Q Consensus 221 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~ 292 (515)
..+++|+.|+|++|++.+..| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+.....+
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccccc
Confidence 666777777777777765544 66777777777777777743 356777777777777777765443333
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=155.55 Aligned_cols=150 Identities=14% Similarity=0.221 Sum_probs=87.9
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 456666666666666 334 4666666666666666555 3432 3556666666666666665555566666666666
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCc-CCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNM-LSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 193 (515)
++++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++. + .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 666666665555666666666666666665 44 233 455666666666666666532 2 455555555555555554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-19 Score=166.45 Aligned_cols=173 Identities=20% Similarity=0.252 Sum_probs=92.4
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
...+.+++.++++++.++ .++ .+.. +++|++|++++|.++. ++ .+..+++|++|++++|+++ .++. +..+++
T Consensus 15 d~~l~~l~~l~l~~~~i~-~~~-~~~~-l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~ 86 (263)
T 1xeu_A 15 DPGLANAVKQNLGKQSVT-DLV-SQKE-LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTK 86 (263)
T ss_dssp SHHHHHHHHHHHTCSCTT-SEE-CHHH-HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSS
T ss_pred CHHHHHHHHHHhcCCCcc-ccc-chhh-cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCC
Confidence 334455555666666665 444 2333 5566666666666652 33 4566666666666666665 4444 455666
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccC
Q 043235 87 LDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (515)
|++|++++|++++.. . +.. ++|++|++++|++++. ..+..+++|++|++++|++++. + .+..+++|++|++++
T Consensus 87 L~~L~L~~N~l~~l~-~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 87 LEELSVNRNRLKNLN-G-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHG 159 (263)
T ss_dssp CCEEECCSSCCSCCT-T-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTT
T ss_pred CCEEECCCCccCCcC-c-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCC
Confidence 666666666665421 1 222 5555555555555532 2355555555555555555532 2 344555555555555
Q ss_pred ccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeee
Q 043235 167 NYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGL 215 (515)
Q Consensus 167 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~ 215 (515)
|++++. ..+. .+++|+.|++++|.++..
T Consensus 160 N~i~~~--~~l~-------------------~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT--GGLT-------------------RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC--TTST-------------------TCCCCCEEEEEEEEEECC
T ss_pred CcCcch--HHhc-------------------cCCCCCEEeCCCCcccCC
Confidence 555432 2233 445566666666666654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-19 Score=156.82 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=132.8
Q ss_pred CCCCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCC
Q 043235 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSC 84 (515)
Q Consensus 5 ~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l 84 (515)
+..+.+++|++|++++|.++ .+| .+.. +++|++|++++|.++ .+..+..+++|++|++++|.+++..+.. +..+
T Consensus 38 i~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l 111 (197)
T 4ezg_A 38 ITEAQMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPN-LSGL 111 (197)
T ss_dssp CBHHHHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTC
T ss_pred CChhhcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChh-hcCC
Confidence 34456789999999999998 778 4555 799999999999877 3458999999999999999998545554 4789
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEEcccCC-CCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEE
Q 043235 85 LSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH-FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLL 163 (515)
Q Consensus 85 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 163 (515)
++|++|++++|.+++..+..+..+++|++|++++|+ ++. ++ .+..+++|++|++++|.+++. + .+..+++|++|+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLY 187 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEE
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEE
Confidence 999999999999998778889999999999999998 664 44 689999999999999999853 4 688999999999
Q ss_pred ccCccccc
Q 043235 164 MSENYLQG 171 (515)
Q Consensus 164 l~~n~l~~ 171 (515)
+++|++.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 99999863
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=161.38 Aligned_cols=167 Identities=22% Similarity=0.275 Sum_probs=124.2
Q ss_pred ccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCC
Q 043235 202 VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281 (515)
Q Consensus 202 L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 281 (515)
+..++++++.++++. .+..+++|++|++++|+++. ++ .+..+++|+.|++++|++++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 445555666665543 45667788888888888764 33 67778888888888888875443 77888888888888
Q ss_pred CcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccc
Q 043235 282 NRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN 361 (515)
Q Consensus 282 n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (515)
|++++. |.. . .+
T Consensus 95 N~l~~l-~~~------------------------------------------------------------------~-~~ 106 (263)
T 1xeu_A 95 NRLKNL-NGI------------------------------------------------------------------P-SA 106 (263)
T ss_dssp SCCSCC-TTC------------------------------------------------------------------C-CS
T ss_pred CccCCc-Ccc------------------------------------------------------------------c-cC
Confidence 887642 110 0 15
Q ss_pred cCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecc
Q 043235 362 YMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVS 441 (515)
Q Consensus 362 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls 441 (515)
+|++|++++|++++. + .+..+++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 107 CLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred cccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 678888888888853 3 578888899999999988854 3 688888999999999998865 678888899999999
Q ss_pred cCccccc
Q 043235 442 YNNLSGP 448 (515)
Q Consensus 442 ~N~l~~~ 448 (515)
+|++++.
T Consensus 181 ~N~~~~~ 187 (263)
T 1xeu_A 181 GQKCVNE 187 (263)
T ss_dssp EEEEECC
T ss_pred CCcccCC
Confidence 9988866
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-19 Score=169.27 Aligned_cols=215 Identities=9% Similarity=-0.003 Sum_probs=120.8
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCc----CCCCcChhccCCCCc
Q 043235 84 CLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNM----LSGDIPHWIGNFSVL 159 (515)
Q Consensus 84 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L 159 (515)
|++|+.+++.+ .++.+...+|.++++|+.+++++|.+..+.+.+|..+.++..+....+. ........|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56666666655 5555555556666666666666665555555555555555544443311 111122233333344
Q ss_pred c-EEEccCcccc-ccccccccCCCCCcEEeCCCCCC----CCcC-CCCcccEEEcccCceeeeccccccCCCCccEEecc
Q 043235 160 S-VLLMSENYLQ-GNIPVQLNNLKSLEFIDLSENSL----ISLS-NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLR 232 (515)
Q Consensus 160 ~-~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l----~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls 232 (515)
+ .+.+.....- ......-....+++.+.+.++-. ..+. .+++|+.+++++|+++.+.+.+|.+|.+|+++++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 3 2222211100 00000001122333444333211 0011 25677777777777777777778888888888887
Q ss_pred CCccCCcCchhhhcCCCcC-EEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccc
Q 043235 233 DNKLFGRIPHQINERSNLH-VLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREA 301 (515)
Q Consensus 233 ~n~i~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~ 301 (515)
+| ++.+...+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.++...+.+|.+++.|+.+
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 77 6666677777787887 788777 6666667777788888888887777776666777777776654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-21 Score=196.69 Aligned_cols=79 Identities=20% Similarity=0.211 Sum_probs=54.3
Q ss_pred cccCCEEEcCCCcCccccccchhccccCCeeccCCccccccC-hhhhcCccCCCeeeCCCCcccccCCc---cccCCCCC
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAI-PESFSNLKMIESLDLSRNKLSGQIPP---QLTELNFL 435 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L 435 (515)
+++|+.|+|++|++++ +| .+..+++|++|+|++|++++.. |..|..+++|+.|+|++|++++..|. .+..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 4566667777777764 45 6777777777777777777665 77777777888888888877755442 23346777
Q ss_pred CEEec
Q 043235 436 SNFNV 440 (515)
Q Consensus 436 ~~L~L 440 (515)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 77754
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-18 Score=150.68 Aligned_cols=91 Identities=24% Similarity=0.369 Sum_probs=53.4
Q ss_pred cccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEe
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFN 439 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 439 (515)
+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 34455555555555545555555556666666666666555555566666666666666666655566666666666666
Q ss_pred cccCcccccCC
Q 043235 440 VSYNNLSGPIP 450 (515)
Q Consensus 440 Ls~N~l~~~~p 450 (515)
+++|++++..+
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 66666655544
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-18 Score=163.76 Aligned_cols=289 Identities=12% Similarity=0.055 Sum_probs=161.8
Q ss_pred ccCCcEEECcCCcccccCCccccC-CCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccC------
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGE-MKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMN------ 107 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------ 107 (515)
+.+++.|.++++ +.......+.. +++|++|||++|++. ..... ...++.++.+.+..|.| ...+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~-~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGK-AGTYPNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEES-SSSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecCc-ccccccccccccccccc---CHHHhcccccccc
Confidence 356778877764 22122223333 677777777777765 11100 01122244455555533 2345666
Q ss_pred --CCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc----cccccccccCCC
Q 043235 108 --LTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL----QGNIPVQLNNLK 181 (515)
Q Consensus 108 --l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~l~~l~ 181 (515)
+++|+.+++.+ .++.+...+|..+++|+.+++.+|.+....+.+|..+.++..+....+.. ......+|..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77777777777 66666666777777777777777776655566666666565555544221 111122233344
Q ss_pred CCc-EEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhh-hcCCCcCEEEccCcc
Q 043235 182 SLE-FIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NERSNLHVLLLRGNY 259 (515)
Q Consensus 182 ~L~-~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~ 259 (515)
.|+ .+++....- +.......-....++..+.+.++-.. .....+ ..+++|+.++|++|+
T Consensus 177 ~L~~~i~~~~~~~------------------l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 177 PLETTIQVGAMGK------------------LEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp CCEEEEEECTTCC------------------HHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBC
T ss_pred ccceeEEecCCCc------------------HHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCC
Confidence 443 222221110 00000011112334555555554221 111122 236777777777777
Q ss_pred CCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccc
Q 043235 260 LQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQD 339 (515)
Q Consensus 260 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
++.+.+.+|..+++|+.+++.+| +....+.+|.+
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~--------------------------------------------- 271 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN--------------------------------------------- 271 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT---------------------------------------------
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehHHHhhC---------------------------------------------
Confidence 77666677777777777777776 54333333332
Q ss_pred cccceeeeccCccccccccccccCC-EEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeC
Q 043235 340 QQVGAKFVTKNRYEFFIGSNLNYMA-GLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDL 416 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 416 (515)
+.+|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus 272 --------------------~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 --------------------CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp --------------------CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred --------------------ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 45566 677776 566566677888888888888888888777788888888888763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.6e-20 Score=187.89 Aligned_cols=181 Identities=20% Similarity=0.203 Sum_probs=131.8
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCc-------------ccccCCccccCCCCCCEEE-CcCCcCc
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNN-------------FEGNIPYSVGEMKELTILD-LSRNNFT 73 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~l~ 73 (515)
..+++|+.|++++|+++ .+|..+.. +++|+.|++++|. +.+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45778889999999997 88999887 7899999987775 4556677788888888888 6666543
Q ss_pred ccCchHHH-----hC--CCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCC
Q 043235 74 GKLPRPIV-----SS--CLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 74 ~~l~~~~~-----~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
.++...+ .. ...|++|++++|.+++ +|. +..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 3332110 00 1257788888888775 344 777888888888888887 56777788888888888888887
Q ss_pred CCcChhccCCCCccEEEccCccccccc-cccccCCCCCcEEeCCCCCCCCc
Q 043235 147 GDIPHWIGNFSVLSVLLMSENYLQGNI-PVQLNNLKSLEFIDLSENSLISL 196 (515)
Q Consensus 147 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~l 196 (515)
+ +| .++.+++|+.|++++|++++.. |..+..+++|+.|++++|++..+
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5 45 6777888888888888887665 77777777777777777766443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=146.95 Aligned_cols=132 Identities=27% Similarity=0.358 Sum_probs=94.0
Q ss_pred cEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCc-cccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCC
Q 043235 227 LTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPN-QLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDD 305 (515)
Q Consensus 227 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~ 305 (515)
+++++++|+++ .+|..+.. ++++|++++|++++..+. .+..+++|++|++++|.+++..|..+..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 56677777664 44443332 677777777777755543 3677777777777777777655554433
Q ss_pred CCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccc
Q 043235 306 SSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQ 385 (515)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 385 (515)
+++|++|+|++|++++..+..|..++
T Consensus 77 ------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 77 ------------------------------------------------------ASHIQELQLGENKIKEISNKMFLGLH 102 (192)
T ss_dssp ------------------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred ------------------------------------------------------cccCCEEECCCCcCCccCHHHhcCCC
Confidence 45677777777777777777778888
Q ss_pred cCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCC
Q 043235 386 NIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIP 426 (515)
Q Consensus 386 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 426 (515)
+|++|+|++|++++..|..|..+++|++|+|++|.+.+..+
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88888888888887788888888888888888888875543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-16 Score=153.59 Aligned_cols=246 Identities=6% Similarity=0.001 Sum_probs=121.1
Q ss_pred cCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEE
Q 043235 36 QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLY 115 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 115 (515)
..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++ .++...|.++ +|+.+.+.. .++.+...+|.++.+|+.++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 34444444432 333334444443 4555554443 33 4444444442 355555443 33334444445555555555
Q ss_pred cccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC-
Q 043235 116 LDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI- 194 (515)
Q Consensus 116 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~- 194 (515)
+.+|+++.+...+|. ..+|+.+.+..+ ++.+...+|.++++|+.+.+..+ ++.....+|.. .+|+.+.+.+ .+.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccE
Confidence 554444433333333 344555554422 33333444444555555555443 23233333443 4455554422 221
Q ss_pred ----CcCCCCcccEEEcccCcee-----eeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCC
Q 043235 195 ----SLSNLSFVKHIYLQNNAIK-----GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIP 265 (515)
Q Consensus 195 ----~l~~l~~L~~L~L~~n~i~-----~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 265 (515)
.+..+++|+.+.+.+|.+. .+.+.+|.+|++|+.+++.+ .++.+...+|.++++|+.+.|..+ ++.+..
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 2224445555555544433 45556666777777777763 355555666666777777777544 554555
Q ss_pred ccccCCCCCCEEECCCCcCcCCCCccccCC
Q 043235 266 NQLCQLRKLSIMDLSRNRLNGPIPSCLGNV 295 (515)
Q Consensus 266 ~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l 295 (515)
.+|..+ +|+.+++++|.+....+..|.++
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 666666 67777777766655445555554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-17 Score=142.97 Aligned_cols=115 Identities=23% Similarity=0.337 Sum_probs=104.9
Q ss_pred cccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEe
Q 043235 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFN 439 (515)
Q Consensus 360 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 439 (515)
.++|++|++++|+++ .+|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 457899999999998 7778999999999999999999988889999999999999999999988888999999999999
Q ss_pred cccCcccccCCC-CcccCCCCcccccCCCCCCCCccC
Q 043235 440 VSYNNLSGPIPD-KEQFATFDDCSYKGNSALCGSMIK 475 (515)
Q Consensus 440 Ls~N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~l~ 475 (515)
|++|++++..+. ...+..++.+.+.+|||.|+|.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 999999977665 567889999999999999998754
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-16 Score=153.63 Aligned_cols=313 Identities=8% Similarity=0.023 Sum_probs=163.9
Q ss_pred ccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCCh
Q 043235 48 FEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTD 127 (515)
Q Consensus 48 i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 127 (515)
++.+...+|.++.+|+.+.+..+ ++ .+...+|.+|.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 44445556666666666666533 55 566666666666666666543 44444555666666666555433 3323444
Q ss_pred hhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC-----CcCCCCcc
Q 043235 128 GLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI-----SLSNLSFV 202 (515)
Q Consensus 128 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~l~~l~~L 202 (515)
+|..+..++...... .......+|.++.+|+.+.+.++... .....|..+.+|+.+++..+ +. .+..+..|
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 444443222222111 11122345555666666666544322 34445556666666665544 21 22244455
Q ss_pred cEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCC
Q 043235 203 KHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282 (515)
Q Consensus 203 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 282 (515)
+.+.+..+... . ...+..+..|+.+.+... ++.+....|..+..++.+.+..+... .....|..+..++.+....+
T Consensus 211 ~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 211 ENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred ceeecCCCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 55555444322 1 223334456666666543 23344455666677777777665443 55566666777776665544
Q ss_pred cCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccccccccccc
Q 043235 283 RLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNY 362 (515)
Q Consensus 283 ~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (515)
.+.. .++. .+.+
T Consensus 287 ~i~~---~~F~-----------------------------------------------------------------~~~~ 298 (394)
T 4fs7_A 287 IVPE---KTFY-----------------------------------------------------------------GCSS 298 (394)
T ss_dssp EECT---TTTT-----------------------------------------------------------------TCTT
T ss_pred eecc---cccc-----------------------------------------------------------------cccc
Confidence 3211 1111 1344
Q ss_pred CCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEeccc
Q 043235 363 MAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSY 442 (515)
Q Consensus 363 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 442 (515)
|+.+.+.++ ++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+++..+ ++.....+|.++++|+.+++..
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 555555443 33344455666666666666543 55455566666666666666655 5545556666666666666654
Q ss_pred C
Q 043235 443 N 443 (515)
Q Consensus 443 N 443 (515)
+
T Consensus 376 ~ 376 (394)
T 4fs7_A 376 R 376 (394)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-16 Score=152.35 Aligned_cols=261 Identities=9% Similarity=0.104 Sum_probs=190.6
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
+..++.+.+.+ .++ .++...|..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++ .++...|.+|.+|+.
T Consensus 112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 35566666654 355 5565555543 6888887766 665666777774 588888775 566 677777777888888
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (515)
+++++|+++......|. +.+|+.+.+..+ ++.+...+|..+++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 88887777766666666 577888888744 66566777777888888888764 44455556666 678888874 445
Q ss_pred cccccccccCCCCCcEEeCCCCCCC----------CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCc
Q 043235 170 QGNIPVQLNNLKSLEFIDLSENSLI----------SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGR 239 (515)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~L~~n~l~----------~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 239 (515)
+.....+|.++++|+.+++.+|.+. .+..+++|+.+.+. +.++.+...+|.+|.+|+.+++..+ ++.+
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 5556677788888888887776543 34467788888888 4588888889999999999999665 6667
Q ss_pred CchhhhcCCCcCEEEccCccCCCCCCccccCCC-CCCEEECCCCcCc
Q 043235 240 IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLR-KLSIMDLSRNRLN 285 (515)
Q Consensus 240 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~i~ 285 (515)
...+|.++ +|+.+++.+|.+.......|..++ +++.|.+..+.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 78889999 999999999998877778888874 7889998887654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.6e-17 Score=138.90 Aligned_cols=132 Identities=20% Similarity=0.166 Sum_probs=59.1
Q ss_pred CCCccEEeCcCCcCC-CCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 10 YDKLRHLDISSNNFS-GKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~-~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
.++|++|++++|.++ +.+|..+.. +++|++|++++|.+++. ..+..+++|++|++++|.+++.+|. .+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCC
Confidence 344555555555554 344443332 44555555555555432 4445555555555555555422322 223345555
Q ss_pred EEEccCccccccCC-ccccCCCCCCEEEcccCCCCCcCC---hhhhCCCCCcEEEcccCcC
Q 043235 89 WLDLSNNNFYGQLF-PNYMNLTDLGSLYLDNNHFSGKMT---DGLLSSTLLRVLNVSNNML 145 (515)
Q Consensus 89 ~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l 145 (515)
+|++++|.+++... ..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 55555555443211 334444444444444444443222 2344444444444444443
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-18 Score=180.96 Aligned_cols=191 Identities=20% Similarity=0.154 Sum_probs=96.1
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEE-----ECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCC
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYL-----DMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL 85 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L-----~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~ 85 (515)
++++.|++.+|.+. ..+..+.. ...|+.+ +++.|.+. ..+..+..+++|+.|+|++|.+. .+|..++ .++
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCC
T ss_pred CccceEEeeCCCCC-cchhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCC
Confidence 45777888888776 44443332 1122222 22233333 44667777888888888888887 7777765 577
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEcc
Q 043235 86 SLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMS 165 (515)
Q Consensus 86 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (515)
+|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|..+++|++|+|++|.++ .+|..|+.+++|++|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 8888888888877 56677777888888888888877 55777777788888888888776 556667777888888888
Q ss_pred CccccccccccccCCCC-CcEEeCCCCCCCCcCCCCcccEEEcccC
Q 043235 166 ENYLQGNIPVQLNNLKS-LEFIDLSENSLISLSNLSFVKHIYLQNN 210 (515)
Q Consensus 166 ~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~l~~l~~L~~L~L~~n 210 (515)
+|.+++.+|..+..+.. ...+++++|.+.. .....++.|+++.|
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~-~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEI-PLPHERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCC---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccC-cCccccceeEeecc
Confidence 88877766665543211 1224455554421 12233444444444
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=140.84 Aligned_cols=127 Identities=24% Similarity=0.257 Sum_probs=92.8
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
+++++++|.++ .+|..+ +++|++|++++|.++ .+|..|.++++|++|+|++|.++ .++...|.++++|++|+|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence 57788888877 777654 357788888888777 56677777788888888888777 6666666777777777777
Q ss_pred CccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCC
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
+|+++...+..|.++++|++|++++|+++...+..|..+++|++|++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77777666666777777777777777777655556666777777777777664
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.8e-17 Score=139.13 Aligned_cols=133 Identities=20% Similarity=0.135 Sum_probs=80.8
Q ss_pred ccCCcEEECcCCccc-ccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCE
Q 043235 35 FQKLIYLDMSKNNFE-GNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGS 113 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 113 (515)
+++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..+..+.++++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777777776 455666666777777777777766 34 22455666666666666666545555555666666
Q ss_pred EEcccCCCCCcC-ChhhhCCCCCcEEEcccCcCCCCcC---hhccCCCCccEEEccCcccc
Q 043235 114 LYLDNNHFSGKM-TDGLLSSTLLRVLNVSNNMLSGDIP---HWIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 114 L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 170 (515)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666665432 1455566666666666666654333 35555666666666666554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-17 Score=176.38 Aligned_cols=120 Identities=23% Similarity=0.216 Sum_probs=40.2
Q ss_pred CCccEEEccCccccccccccccCCCCCcEEeCCCCCCCC--------------cCCCCcccEEEcccCceeeeccccccC
Q 043235 157 SVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS--------------LSNLSFVKHIYLQNNAIKGLIPIALLR 222 (515)
Q Consensus 157 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--------------l~~l~~L~~L~L~~n~i~~~~~~~~~~ 222 (515)
+.++.|++.+|.+... +.. .++.++|+.|.+.. +..+..|+.|+|++|.+..+ +..+..
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI-SANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCC-CGGGGG
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCC-ChhhcC
Confidence 4567777877777642 322 23344444443322 12334445555555554432 223334
Q ss_pred CCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCc
Q 043235 223 SSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285 (515)
Q Consensus 223 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 285 (515)
+++|++|+|++|.|+ .+|..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|.|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC
Confidence 445555555555544 34444444555555555555554 33444444555555555555443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=136.48 Aligned_cols=133 Identities=20% Similarity=0.227 Sum_probs=108.3
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
.+.+++++++++ .+|..+ +++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 478889999888 778655 468999999999988777777888899999999999988 777777788888999999
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcC
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIP 150 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 150 (515)
++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9988887766677888888888888888886666667778888888888888876544
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-16 Score=134.41 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=45.8
Q ss_pred cCCcEEECcCCccc-ccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 36 QKLIYLDMSKNNFE-GNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 36 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34555555555554 344444444555555555555444 22 112344444444444444443333333334444444
Q ss_pred EcccCCCCCc-CChhhhCCCCCcEEEcccCcCC
Q 043235 115 YLDNNHFSGK-MTDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 115 ~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~ 146 (515)
++++|++++. .+..+..+++|++|++++|.++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 4444444321 1133333444444444444443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-16 Score=132.28 Aligned_cols=131 Identities=21% Similarity=0.260 Sum_probs=112.6
Q ss_pred CCCCCccEEeCcCCcCC-CCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 8 AKYDKLRHLDISSNNFS-GKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~-~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
...+++++|++++|.++ +.+|..+.. +++|++|++++|.+++. ..+..+++|++|++++|.+++.+|. .+..+++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~ 89 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPN 89 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTT
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCC
Confidence 45688999999999998 688876655 79999999999999965 7899999999999999999944554 4577999
Q ss_pred CCEEEccCcccccc-CCccccCCCCCCEEEcccCCCCCcCC---hhhhCCCCCcEEEccc
Q 043235 87 LDWLDLSNNNFYGQ-LFPNYMNLTDLGSLYLDNNHFSGKMT---DGLLSSTLLRVLNVSN 142 (515)
Q Consensus 87 L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~l~~ 142 (515)
|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999999864 34789999999999999999997665 5788899999998863
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=143.25 Aligned_cols=330 Identities=11% Similarity=0.071 Sum_probs=250.5
Q ss_pred CCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccc
Q 043235 26 KLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY 105 (515)
Q Consensus 26 ~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 105 (515)
.+....|..+.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++ .++...|.++.+|+.+.+..+ +......+|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence 466666766889999999854 77677889999999999999865 66 788888999999999888755 555666778
Q ss_pred cCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcE
Q 043235 106 MNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185 (515)
Q Consensus 106 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 185 (515)
.++..++...... +......+|..+.+|+.+.+.++. .......|.++.+|+.+.+..+ ++.....+|..+..|+.
T Consensus 137 ~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 137 KGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 7776544443333 333556789999999999998654 3356678999999999999877 55466678899999999
Q ss_pred EeCCCCCCC---CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCC
Q 043235 186 IDLSENSLI---SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQG 262 (515)
Q Consensus 186 L~L~~n~l~---~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 262 (515)
+.+..+... .......|+.+.+... ++.+...+|..+..++.+.+..+... +....|..+..++.+....+.+.
T Consensus 213 i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~- 289 (394)
T 4fs7_A 213 MEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP- 289 (394)
T ss_dssp CCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-
T ss_pred eecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-
Confidence 988776541 1224567888888653 45566778999999999999887553 66778899999999988876543
Q ss_pred CCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCcccccccccccc
Q 043235 263 RIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQV 342 (515)
Q Consensus 263 ~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
...|..+.+|+.+.+..+ ++.....+|.
T Consensus 290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~------------------------------------------------- 317 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFE------------------------------------------------- 317 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCEECTTTTT-------------------------------------------------
T ss_pred --cccccccccccccccccc-cceechhhhc-------------------------------------------------
Confidence 357888999999998765 3322222332
Q ss_pred ceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCccc
Q 043235 343 GAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS 422 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 422 (515)
.+.+|+.+++.++ ++.....+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+ +.
T Consensus 318 ----------------~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~ 378 (394)
T 4fs7_A 318 ----------------SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE 378 (394)
T ss_dssp ----------------TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG
T ss_pred ----------------CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE
Confidence 2567888888654 66566788999999999999887 77678889999999999999765 33
Q ss_pred ccCCccccCCCCCCEE
Q 043235 423 GQIPPQLTELNFLSNF 438 (515)
Q Consensus 423 ~~~~~~l~~l~~L~~L 438 (515)
.+...|.++++|+.+
T Consensus 379 -~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 379 -QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -GGGGGBCTTCEEEEE
T ss_pred -EhhheecCCCCCcEE
Confidence 345678888888765
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=130.46 Aligned_cols=130 Identities=20% Similarity=0.220 Sum_probs=76.3
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 117 (515)
.+.++++++.++ .+|..+ .++|++|++++|+++ .++...+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 456666666666 334332 246666666666666 5555555566666666666666665544455666666666666
Q ss_pred cCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 118 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
+|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 666665555555556666666666666654444445555666666666665553
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=132.04 Aligned_cols=133 Identities=19% Similarity=0.215 Sum_probs=88.4
Q ss_pred CCCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCC
Q 043235 7 NAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLS 86 (515)
Q Consensus 7 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~ 86 (515)
+..+.+|++|++++|+++ .+|. +....++|++|++++|.+++. ..+..+++|++|++++|.++ .+|..++..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 445677788888888777 5554 444344788888888877754 56777777888888888777 666666667777
Q ss_pred CCEEEccCccccccCCc--cccCCCCCCEEEcccCCCCCcCCh----hhhCCCCCcEEEcccCcCC
Q 043235 87 LDWLDLSNNNFYGQLFP--NYMNLTDLGSLYLDNNHFSGKMTD----GLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 87 L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~ 146 (515)
|++|++++|.++. .+. .+..+++|++|++++|.++. .+. .+..+++|++|++++|.+.
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777777753 333 56666677777777776653 333 2555666666666665543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-15 Score=129.59 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=68.7
Q ss_pred ccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCC
Q 043235 56 VGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLL 135 (515)
Q Consensus 56 ~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 135 (515)
+.++.+|++|++++|.++ .++. +....++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 444555555555555555 4432 222223555555555555543 445555556666666665554433444555566
Q ss_pred cEEEcccCcCCCCcCh--hccCCCCccEEEccCccccccccc----cccCCCCCcEEeCCCCCC
Q 043235 136 RVLNVSNNMLSGDIPH--WIGNFSVLSVLLMSENYLQGNIPV----QLNNLKSLEFIDLSENSL 193 (515)
Q Consensus 136 ~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l 193 (515)
++|++++|.++ .+|. .+..+++|+.|++++|.+.. .|. .+..+++|+.||+++|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666554 2333 45555566666666666552 233 245555555555555543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-17 Score=144.75 Aligned_cols=155 Identities=22% Similarity=0.289 Sum_probs=113.4
Q ss_pred cCCCCccEEeccCCccCCcCch------hhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccC
Q 043235 221 LRSSTLLTLDLRDNKLFGRIPH------QINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294 (515)
Q Consensus 221 ~~~~~L~~L~Ls~n~i~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~ 294 (515)
.....++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-- 89 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-- 89 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH--
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh--
Confidence 3344566666666666655554 78888888888888888885 55 7788888888888888876 233221
Q ss_pred CcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCc
Q 043235 295 VPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFS 374 (515)
Q Consensus 295 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 374 (515)
..+++|++|++++|+++
T Consensus 90 ---------------------------------------------------------------~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 90 ---------------------------------------------------------------AVADTLEELWISYNQIA 106 (198)
T ss_dssp ---------------------------------------------------------------HHHHHCSEEEEEEEECC
T ss_pred ---------------------------------------------------------------hcCCcCCEEECcCCcCC
Confidence 12577888888888888
Q ss_pred cccccchhccccCCeeccCCccccccCh-hhhcCccCCCeeeCCCCcccccCCcc----------ccCCCCCCEEecccC
Q 043235 375 GEIPWKIGQLQNIRALNLSNNLLSGAIP-ESFSNLKMIESLDLSRNKLSGQIPPQ----------LTELNFLSNFNVSYN 443 (515)
Q Consensus 375 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----------l~~l~~L~~L~Ls~N 443 (515)
+ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|.. +..+++|+.|| +|
T Consensus 107 ~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~ 182 (198)
T 1ds9_A 107 S-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GM 182 (198)
T ss_dssp C-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CG
T ss_pred c-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cc
Confidence 5 44 57888889999999998885433 47888888999999999887665542 77888888886 66
Q ss_pred cccc
Q 043235 444 NLSG 447 (515)
Q Consensus 444 ~l~~ 447 (515)
+++.
T Consensus 183 ~i~~ 186 (198)
T 1ds9_A 183 PVDV 186 (198)
T ss_dssp GGTT
T ss_pred ccCH
Confidence 6654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.3e-13 Score=130.64 Aligned_cols=321 Identities=9% Similarity=0.099 Sum_probs=149.0
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCc---CcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN---FTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
|+.+.+..+ ++.+...+|.++.+|+.+.+..|. ++ .+....|.++.+|+.+.+..+ ++.....+|.++.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 555555543 444555556666666666655442 44 455555555556655555433 333444455555666666
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
.+..+ +..+...+|..+..|+.+.+..+ ++.....+|.. ..|+.+.+..+-.. ....+|..+..++......+...
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecccccccc
Confidence 55433 22244445555555666555443 22222333332 34555555443322 33344555555555554443332
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 274 (515)
...... ...+.........+.....+..+.+... ++.+...+|..+..|+.+.+..+... ....+|..+++|
T Consensus 219 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L 290 (394)
T 4gt6_A 219 AIDNVL------YEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPAL 290 (394)
T ss_dssp BSSSCE------EEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTC
T ss_pred ccccee------ecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCccccccccc
Confidence 221100 0000000000001112223333333221 22233445555566666665544332 444555566666
Q ss_pred CEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc
Q 043235 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354 (515)
Q Consensus 275 ~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
+.+.+.. .++.....+|.
T Consensus 291 ~~i~l~~-~i~~I~~~aF~------------------------------------------------------------- 308 (394)
T 4gt6_A 291 QDIEFSS-RITELPESVFA------------------------------------------------------------- 308 (394)
T ss_dssp CEEECCT-TCCEECTTTTT-------------------------------------------------------------
T ss_pred ccccCCC-cccccCceeec-------------------------------------------------------------
Confidence 6665532 22211111221
Q ss_pred ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCC
Q 043235 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNF 434 (515)
Q Consensus 355 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 434 (515)
.+.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++.... ..+.....
T Consensus 309 ----~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~ 379 (394)
T 4gt6_A 309 ----GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSG 379 (394)
T ss_dssp ----TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCC
T ss_pred ----CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCC
Confidence 2445555666543 44344556777777777777544 555566677777777777777765442 34556666
Q ss_pred CCEEecccCc
Q 043235 435 LSNFNVSYNN 444 (515)
Q Consensus 435 L~~L~Ls~N~ 444 (515)
|+.+.+..|.
T Consensus 380 L~~i~i~~~~ 389 (394)
T 4gt6_A 380 LQNLPVAPGS 389 (394)
T ss_dssp C---------
T ss_pred CCEEEeCCCC
Confidence 7776665554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=123.18 Aligned_cols=107 Identities=23% Similarity=0.295 Sum_probs=87.1
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLD 91 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 91 (515)
..+.+++++|.++ .+|..+ .++|++|+|++|.|++..|..|.++++|++|+|++|+++ .+|...|..+++|++|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEE
Confidence 3578889988888 788765 468888999998888777888888888888888888888 77777777888888888
Q ss_pred ccCccccccCCccccCCCCCCEEEcccCCCCC
Q 043235 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG 123 (515)
Q Consensus 92 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 123 (515)
|++|++++..+..|..+++|++|++++|.+..
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 88888887666667888888888888887764
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=123.61 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=71.6
Q ss_pred CCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEeccc
Q 043235 363 MAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSY 442 (515)
Q Consensus 363 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~ 442 (515)
.+++++++|.++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456677777776 3454442 5677777777777766666677777777777777777755555666777777777777
Q ss_pred CcccccCCC-CcccCCCCcccccCCCCCCCCc
Q 043235 443 NNLSGPIPD-KEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 443 N~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
|++++..|. ...+..++.+.+.+|++.|.|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 777665554 4456666777777777777664
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=121.81 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=86.9
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
-+.+++++|+++ .+|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|..+|..+++|++|+|
T Consensus 14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEEC
Confidence 368899999887 788766 368899999999988877888888899999999999888 788777778888888888
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCC
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG 123 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~ 123 (515)
++|+++...+..|..+++|++|++++|.+..
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8888886665567788888888888888763
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-12 Score=126.96 Aligned_cols=332 Identities=9% Similarity=0.066 Sum_probs=226.0
Q ss_pred CCCCCCCC-CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCc---ccccCCccccCCCCCCEEECcCCcCcccCchH
Q 043235 4 RLPNAKYD-KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNN---FEGNIPYSVGEMKELTILDLSRNNFTGKLPRP 79 (515)
Q Consensus 4 ~~~~~~~~-~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~ 79 (515)
.-+|..++ .|+.+.+..+ ++ .+.+..|..+.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++ .++..
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~ 131 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSE 131 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTT
T ss_pred HhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhh
Confidence 44566775 5999999754 76 7777777778999999998764 66677789999999999988765 65 78888
Q ss_pred HHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc
Q 043235 80 IVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL 159 (515)
Q Consensus 80 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 159 (515)
.|..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++.+...+|.. ..|+.+.+..+-.. ....+|..+.++
T Consensus 132 aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcccc
Confidence 8899999999999754 44566778999999999999865 45455666654 67999998765433 556678888888
Q ss_pred cEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCc
Q 043235 160 SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGR 239 (515)
Q Consensus 160 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 239 (515)
+......+.........+........... .......+..+.+. +.++.+...+|.++..|+.+.+.++.. .+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I 279 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALI------RYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SI 279 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEE------ECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EE
T ss_pred ceecccccccccccceeeccccccccccc------ccccccccceEEcC-CcceEcccceeeecccccEEecccccc-ee
Confidence 88877665544211111111111111100 11122233444443 345666677899999999999987654 36
Q ss_pred CchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCc
Q 043235 240 IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPV 319 (515)
Q Consensus 240 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 319 (515)
...+|.++++|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.....+|.
T Consensus 280 ~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-------------------------- 331 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA-------------------------- 331 (394)
T ss_dssp CTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--------------------------
T ss_pred cCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh--------------------------
Confidence 67788899999999996 4566677788999999999998754 3322222332
Q ss_pred cccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccc
Q 043235 320 AYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG 399 (515)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 399 (515)
.+.+|+.+.+..+ ++.+...+|.++.+|+.+++.++...
T Consensus 332 ---------------------------------------~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~- 370 (394)
T 4gt6_A 332 ---------------------------------------GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ- 370 (394)
T ss_dssp ---------------------------------------TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-
T ss_pred ---------------------------------------CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-
Confidence 2667788888654 66566778999999999999988654
Q ss_pred cChhhhcCccCCCeeeCCCCccc
Q 043235 400 AIPESFSNLKMIESLDLSRNKLS 422 (515)
Q Consensus 400 ~~~~~~~~l~~L~~L~Ls~N~l~ 422 (515)
..++....+|+.+.+..+.+.
T Consensus 371 --~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 371 --WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp --HHTCBCCCCC-----------
T ss_pred --hhhhhccCCCCEEEeCCCCEE
Confidence 256778888999988877653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-16 Score=140.18 Aligned_cols=146 Identities=24% Similarity=0.287 Sum_probs=75.8
Q ss_pred cCCcEEECcCCcccccCCc------cccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCC
Q 043235 36 QKLIYLDMSKNNFEGNIPY------SVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLT 109 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 109 (515)
..++.++++.+.+.+..|. .+..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 3444444444444444443 4555555555555555555 344 2344555555555555554 2334444455
Q ss_pred CCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcC-hhccCCCCccEEEccCccccccccc----------ccc
Q 043235 110 DLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIP-HWIGNFSVLSVLLMSENYLQGNIPV----------QLN 178 (515)
Q Consensus 110 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~l~ 178 (515)
+|++|++++|++++. + .+..+++|++|++++|.++...+ ..+..+++|++|++++|.+.+..|. .+.
T Consensus 94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 555555555555532 2 35555556666666666553221 3455566666666666665544332 245
Q ss_pred CCCCCcEEe
Q 043235 179 NLKSLEFID 187 (515)
Q Consensus 179 ~l~~L~~L~ 187 (515)
.+++|+.||
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 556666555
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-14 Score=121.48 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=56.1
Q ss_pred CEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccC
Q 043235 364 AGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443 (515)
Q Consensus 364 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 443 (515)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555554 3443332 45555555555555555555555555555555555555444444555555555555555
Q ss_pred cccccCCC-CcccCCCCcccccCCCCCCCC
Q 043235 444 NLSGPIPD-KEQFATFDDCSYKGNSALCGS 472 (515)
Q Consensus 444 ~l~~~~p~-~~~~~~l~~~~~~gn~~~c~~ 472 (515)
++++..+. ...+..++.+.+.+|++.|.|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 55544443 334555555555555555544
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-14 Score=138.50 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=88.6
Q ss_pred ccCCcEEECcCCcccccCCcccc-----CCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccc----
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVG-----EMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNY---- 105 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---- 105 (515)
.++|++|+|++|.++......+. ..++|++|+|++|.++......+...+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35666666666666543332222 225666666666666532223333344566666666666654333333
Q ss_pred -cCCCCCCEEEcccCCCCCc----CChhhhCCCCCcEEEcccCcCCCCc----ChhccCCCCccEEEccCcccccc----
Q 043235 106 -MNLTDLGSLYLDNNHFSGK----MTDGLLSSTLLRVLNVSNNMLSGDI----PHWIGNFSVLSVLLMSENYLQGN---- 172 (515)
Q Consensus 106 -~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~---- 172 (515)
...++|++|+|++|.++.. ++..+...++|++|++++|.++... +..+...++|++|++++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2345666777776666532 2233455666777777777665322 33455566677777777776643
Q ss_pred ccccccCCCCCcEEeCCCCCCC
Q 043235 173 IPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
+...+...++|++|+|++|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 2233445567777777777763
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-14 Score=140.15 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=116.7
Q ss_pred CCCCCEEECcCCcCcccCchHHHh-----CCCCCCEEEccCccccccCCccc-cCCCCCCEEEcccCCCCCcCChhh---
Q 043235 59 MKELTILDLSRNNFTGKLPRPIVS-----SCLSLDWLDLSNNNFYGQLFPNY-MNLTDLGSLYLDNNHFSGKMTDGL--- 129 (515)
Q Consensus 59 l~~L~~L~L~~n~l~~~l~~~~~~-----~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~--- 129 (515)
++.|++|+|++|.++ ......+. ...+|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 467899999999987 32222222 23689999999999875433333 346789999999999875444444
Q ss_pred --hCCCCCcEEEcccCcCCCC----cChhccCCCCccEEEccCccccccc----cccccCCCCCcEEeCCCCCCCCc---
Q 043235 130 --LSSTLLRVLNVSNNMLSGD----IPHWIGNFSVLSVLLMSENYLQGNI----PVQLNNLKSLEFIDLSENSLISL--- 196 (515)
Q Consensus 130 --~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~l--- 196 (515)
...++|++|++++|.++.. ++..+...++|++|++++|.+.+.. +..+...++|+.|+|++|.+...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2467899999999988642 3344577889999999999987532 45567778999999999998542
Q ss_pred ------CCCCcccEEEcccCceeeeccccc
Q 043235 197 ------SNLSFVKHIYLQNNAIKGLIPIAL 220 (515)
Q Consensus 197 ------~~l~~L~~L~L~~n~i~~~~~~~~ 220 (515)
...+.|++|+|++|.|++.....+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 245789999999999876544444
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=9.8e-13 Score=127.84 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=64.3
Q ss_pred EEcCCC-cCccccccchhccccCCeeccCC-ccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccC
Q 043235 366 LDLSGN-EFSGEIPWKIGQLQNIRALNLSN-NLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443 (515)
Q Consensus 366 L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 443 (515)
++++++ +++ .+|. +..+++|++|+|++ |+|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455665 565 3555 66666666666664 6666555566666666666666666666666666666666666666666
Q ss_pred cccccCCCCcccCCCCcccccCCCCCCCCc
Q 043235 444 NLSGPIPDKEQFATFDDCSYKGNSALCGSM 473 (515)
Q Consensus 444 ~l~~~~p~~~~~~~l~~~~~~gn~~~c~~~ 473 (515)
+|++..|.......++.+.+.+|++.|.|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred ccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 666554443322236666666666666654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.2e-10 Score=108.47 Aligned_cols=313 Identities=8% Similarity=-0.010 Sum_probs=181.6
Q ss_pred ccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 35 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
..+|+.+.+... ++.+...+|.++.+|+.+++..+ ++ .+...+|.++ +|+.+.+..+ ++.....+|... +|+.+
T Consensus 45 ~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred ccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence 456777777654 55566677888888888888644 65 6777777766 5777766543 444444555543 67777
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
.+..+- +.....+|... +++.+.+..+ ++......|..+..++...+..+.........+. ........ .
T Consensus 119 ~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~ 188 (379)
T 4h09_A 119 EFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKNKTIL------E 188 (379)
T ss_dssp ECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETTSSEE------E
T ss_pred cCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccccccee------c
Confidence 776542 22333444433 4555554433 3323344555666666665554332211100000 00000000 0
Q ss_pred CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC
Q 043235 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274 (515)
Q Consensus 195 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 274 (515)
.+.....+..+.+... ........+..+..|+.+.+..+ +..+....|..+..|+.+.+..+ ++.+...+|..+.+|
T Consensus 189 ~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 1112233334433332 22334556667777887777655 33355566777788888888765 555666777788888
Q ss_pred CEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccc
Q 043235 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEF 354 (515)
Q Consensus 275 ~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
+.+.+..+ +......+|
T Consensus 266 ~~i~l~~~-i~~i~~~aF-------------------------------------------------------------- 282 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLC-------------------------------------------------------------- 282 (379)
T ss_dssp CEEEECCC-CSEECTTTT--------------------------------------------------------------
T ss_pred cccccccc-ceecccccc--------------------------------------------------------------
Confidence 88877543 221111111
Q ss_pred ccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCC
Q 043235 355 FIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNF 434 (515)
Q Consensus 355 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 434 (515)
..+.+|+.+++.++.++.....+|.++.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+-..+|.++..
T Consensus 283 ---~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 283 ---SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp ---TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ---ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 22567777888777777666777888888888888754 66566778888888888888655 55555667776643
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.5e-10 Score=109.76 Aligned_cols=303 Identities=11% Similarity=0.042 Sum_probs=206.3
Q ss_pred cccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCC
Q 043235 55 SVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTL 134 (515)
Q Consensus 55 ~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 134 (515)
++....+|+.+.+... ++ .++..+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|.. .+
T Consensus 41 ~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred ccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 4566778999998754 66 788888999999999999754 666777788887 6888877654 55455556655 47
Q ss_pred CcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceee
Q 043235 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKG 214 (515)
Q Consensus 135 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~ 214 (515)
|+.+.+..+ +.......|... +++.+.+..+ ++......|..+..++.+.+..+........ ........
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~--- 184 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAEN----YVLYNKNK--- 184 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEET----TEEEETTS---
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccc----ceeccccc---
Confidence 999988765 332334445443 5666665543 3334456677777887777765543211100 00000111
Q ss_pred eccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccC
Q 043235 215 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294 (515)
Q Consensus 215 ~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~ 294 (515)
.....+..+..+..+.+..... ......+..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++.....++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~- 260 (379)
T 4h09_A 185 TILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ- 260 (379)
T ss_dssp SEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT-
T ss_pred ceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc-
Confidence 1123455666777777765543 355667788889999998765 44466778889999999998765 3322222222
Q ss_pred CcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCc
Q 043235 295 VPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFS 374 (515)
Q Consensus 295 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 374 (515)
.+.+|+.+.+..+ +.
T Consensus 261 ----------------------------------------------------------------~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 261 ----------------------------------------------------------------NCTALKTLNFYAK-VK 275 (379)
T ss_dssp ----------------------------------------------------------------TCTTCCEEEECCC-CS
T ss_pred ----------------------------------------------------------------eeehhcccccccc-ce
Confidence 2456777777544 55
Q ss_pred cccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccC
Q 043235 375 GEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443 (515)
Q Consensus 375 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 443 (515)
......|.++.+|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.+-..+|.++.+|+.+.+..+
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 456677999999999999999998788899999999999999865 66667788999999999987543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.8e-11 Score=115.85 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=56.0
Q ss_pred EEeCcCC-cCCCCCchhHHhcccCCcEEECcC-CcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 15 HLDISSN-NFSGKLPENLGIIFQKLIYLDMSK-NNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 15 ~L~ls~n-~l~~~~p~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
.++++++ +++ .+|. +.. +++|++|+|++ |.+++..+..|.++++|++|+|++|+++ .++...|..+++|++|+|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeC
Confidence 3456655 555 4555 433 45566666664 6666555555666666666666666665 344444455566666666
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCC
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFS 122 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 122 (515)
++|++++..+..|..++ |+.|++.+|.+.
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66655544433444333 555555555554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.2e-10 Score=108.18 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=98.1
Q ss_pred ccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCcccc--CCCCCCEEECCCC--cCcCCCCcccc
Q 043235 218 IALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLC--QLRKLSIMDLSRN--RLNGPIPSCLG 293 (515)
Q Consensus 218 ~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n--~i~~~~p~~~~ 293 (515)
..+..+++|+.|++++|.-. ..+. + .+++|++|+|..|.+.......+. .+++|++|+|+.+ ...+.. .+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~ 240 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMN 240 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHH
Confidence 44566778888888777311 1222 3 367888888888877643333343 6788888887532 111100 000
Q ss_pred CCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcC
Q 043235 294 NVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEF 373 (515)
Q Consensus 294 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 373 (515)
.+. ..+.+..+++|++|+|++|.+
T Consensus 241 ~l~--------------------------------------------------------~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 241 VFR--------------------------------------------------------PLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp GTG--------------------------------------------------------GGSCTTTCTTCCEEEEESCTT
T ss_pred HHH--------------------------------------------------------HHHhcCCCCCcCEEeCCCCCC
Confidence 000 000112367888899988888
Q ss_pred ccccccchh---ccccCCeeccCCccccccC----hhhhcCccCCCeeeCCCCcccccCCccccC-CCCCCEEecccCc
Q 043235 374 SGEIPWKIG---QLQNIRALNLSNNLLSGAI----PESFSNLKMIESLDLSRNKLSGQIPPQLTE-LNFLSNFNVSYNN 444 (515)
Q Consensus 374 ~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L~~L~Ls~N~ 444 (515)
.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.|+...-..+.. + ...+++++++
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 754433332 4778888888888887543 333456788888888888887544333433 2 3567777776
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-09 Score=105.51 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=46.9
Q ss_pred CCcccEEEcccCceeeecccccc---CCCCccEEeccCCccCCcC----chhhhcCCCcCEEEccCccCCCCCCccccC-
Q 043235 199 LSFVKHIYLQNNAIKGLIPIALL---RSSTLLTLDLRDNKLFGRI----PHQINERSNLHVLLLRGNYLQGRIPNQLCQ- 270 (515)
Q Consensus 199 l~~L~~L~L~~n~i~~~~~~~~~---~~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~- 270 (515)
+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.+++.....+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 56677777776666543222222 3567777777777776432 223344577777777777766443333332
Q ss_pred CCCCCEEECCCCc
Q 043235 271 LRKLSIMDLSRNR 283 (515)
Q Consensus 271 l~~L~~L~L~~n~ 283 (515)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456666665
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=9.2e-09 Score=89.71 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=23.3
Q ss_pred hhhhcCCCcCEEEccCc-cCCCC----CCccccCCCCCCEEECCCCcCc
Q 043235 242 HQINERSNLHVLLLRGN-YLQGR----IPNQLCQLRKLSIMDLSRNRLN 285 (515)
Q Consensus 242 ~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~i~ 285 (515)
..+...++|++|+|++| .+.+. +...+...++|++|+|++|.|.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34445566666666666 55532 1233444555666666666553
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-08 Score=86.22 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=58.6
Q ss_pred CccccCCCCCCEEECcCC-cCcccCc---hHHHhCCCCCCEEEccCccccccC----CccccCCCCCCEEEcccCCCCCc
Q 043235 53 PYSVGEMKELTILDLSRN-NFTGKLP---RPIVSSCLSLDWLDLSNNNFYGQL----FPNYMNLTDLGSLYLDNNHFSGK 124 (515)
Q Consensus 53 ~~~~~~l~~L~~L~L~~n-~l~~~l~---~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~ 124 (515)
...+...+.|++|+|++| .+...-. ...+...++|++|+|++|.|.... ...+...+.|++|+|++|.|...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344566777777777777 6652111 112244566777777777665322 22233445566666666665532
Q ss_pred ----CChhhhCCCCCcEEEc--ccCcCCCCc----ChhccCCCCccEEEccCccc
Q 043235 125 ----MTDGLLSSTLLRVLNV--SNNMLSGDI----PHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 125 ----~~~~~~~l~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l 169 (515)
+..++...+.|++|++ ++|.++... ...+...++|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2233444455555555 455554221 12223334455555554444
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-07 Score=85.66 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=38.0
Q ss_pred hccccCCeeccCCcccccc--ChhhhcCccCCCeeeCCCCcccccCCccccCCC--CCCEEecccCcccccCC
Q 043235 382 GQLQNIRALNLSNNLLSGA--IPESFSNLKMIESLDLSRNKLSGQIPPQLTELN--FLSNFNVSYNNLSGPIP 450 (515)
Q Consensus 382 ~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~Ls~N~l~~~~p 450 (515)
..+++|+.|+|++|+|++. ++..+..+++|+.|+|++|+|++. ..+..+. .|++|+|++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3455666666666666542 334555666666666666666643 2223333 66666666666666555
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.35 E-value=8.5e-07 Score=81.19 Aligned_cols=97 Identities=21% Similarity=0.209 Sum_probs=68.8
Q ss_pred EeCcCCcCCCCCchh---HHhcccCCcEEECcCCcccc--cCCccccCCCCCCEEECcCCcCcccCchHHHhCCC--CCC
Q 043235 16 LDISSNNFSGKLPEN---LGIIFQKLIYLDMSKNNFEG--NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCL--SLD 88 (515)
Q Consensus 16 L~ls~n~l~~~~p~~---~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~--~L~ 88 (515)
++++.|... .++.. +...+++|++|+|++|.|++ .++..+..+++|++|+|++|+++ .+.. +..+. +|+
T Consensus 148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~~--l~~l~~l~L~ 223 (267)
T 3rw6_A 148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERE--LDKIKGLKLE 223 (267)
T ss_dssp CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGGG--GGGGTTSCCS
T ss_pred ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cchh--hhhcccCCcc
Confidence 667777543 33332 22337899999999999986 34566778999999999999998 4421 23344 899
Q ss_pred EEEccCccccccCC-------ccccCCCCCCEEEc
Q 043235 89 WLDLSNNNFYGQLF-------PNYMNLTDLGSLYL 116 (515)
Q Consensus 89 ~L~L~~n~i~~~~~-------~~~~~l~~L~~L~L 116 (515)
+|+|++|.+.+..+ ..+..+++|+.||-
T Consensus 224 ~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 224 ELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp EEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred eEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 99999999876444 23677899988863
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-07 Score=80.57 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=71.2
Q ss_pred ccCCEEEcCCCcCccccccchhccccCCeeccCCcc-ccccChhhhcCc----cCCCeeeCCCCc-ccccCCccccCCCC
Q 043235 361 NYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNL-LSGAIPESFSNL----KMIESLDLSRNK-LSGQIPPQLTELNF 434 (515)
Q Consensus 361 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l~~ 434 (515)
..|++||+++|.+++.....+..+++|++|+|++|. |++..-..+..+ ++|++|+|++|. |++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 368999999999998777778899999999999995 776666667765 479999999985 88665567888999
Q ss_pred CCEEecccCc
Q 043235 435 LSNFNVSYNN 444 (515)
Q Consensus 435 L~~L~Ls~N~ 444 (515)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.23 E-value=5.5e-07 Score=76.41 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=46.1
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCc-CcccCchHHHhCC----CCCCEEEccCcc-ccccCCccccCCCC
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN-FTGKLPRPIVSSC----LSLDWLDLSNNN-FYGQLFPNYMNLTD 110 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~l~~~~~~~l----~~L~~L~L~~n~-i~~~~~~~~~~l~~ 110 (515)
+|++||+++|.|++..-..+.++++|++|+|++|. +++.--.. +..+ ++|++|++++|. |++.....+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 56777777766665555556666777777777663 44211111 2222 356666666653 55444444555566
Q ss_pred CCEEEcccCC
Q 043235 111 LGSLYLDNNH 120 (515)
Q Consensus 111 L~~L~L~~n~ 120 (515)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666553
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00016 Score=58.29 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=37.2
Q ss_pred CeeccCCcccc-ccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCccc
Q 043235 388 RALNLSNNLLS-GAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLS 446 (515)
Q Consensus 388 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 446 (515)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 23443322 35777888888887666666777777777766666554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00021 Score=61.72 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=32.1
Q ss_pred ccCCCCCCEEECcCC-cCccc----CchHHHhCCCCCCEEEccCccccccCCcc----ccCCCCCCEEEcccCCCC
Q 043235 56 VGEMKELTILDLSRN-NFTGK----LPRPIVSSCLSLDWLDLSNNNFYGQLFPN----YMNLTDLGSLYLDNNHFS 122 (515)
Q Consensus 56 ~~~l~~L~~L~L~~n-~l~~~----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~i~ 122 (515)
+.+-+.|++|+|++| .|... +-.. +..-+.|++|+|++|.|....... +..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344556666666664 55411 1111 234456666666666665322222 223445555555555554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00013 Score=63.13 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=49.1
Q ss_pred CcccEEEcccCceeee----ccccccCCCCccEEeccCCccCCcC----chhhhcCCCcCEEEccCc---cCCC----CC
Q 043235 200 SFVKHIYLQNNAIKGL----IPIALLRSSTLLTLDLRDNKLFGRI----PHQINERSNLHVLLLRGN---YLQG----RI 264 (515)
Q Consensus 200 ~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n---~i~~----~~ 264 (515)
+.|+.|+|++|.|.+. +..++...+.|++|+|++|.|.... ...+..-+.|++|+|++| .+.. .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 3444444445554432 2234445567777888877776432 234445567888888755 3332 12
Q ss_pred CccccCCCCCCEEECCCCcC
Q 043235 265 PNQLCQLRKLSIMDLSRNRL 284 (515)
Q Consensus 265 ~~~~~~l~~L~~L~L~~n~i 284 (515)
...+..-+.|+.|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 33455667888888887765
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00061 Score=54.90 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=31.3
Q ss_pred EEeCcCCcCC-CCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcC
Q 043235 15 HLDISSNNFS-GKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72 (515)
Q Consensus 15 ~L~ls~n~l~-~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 72 (515)
.++.+++.++ ..+|..+ .++|++|+|++|.|+...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666654 2455443 34566666666666655555555666666666666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 515 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-19 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 9e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-08 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 8e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-14 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-12 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-12 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 9e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-09 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.001 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.004 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-09 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 8e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.003 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 7e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 8e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.001 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 2e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-05 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 5e-05 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 7e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 8e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.003 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.003 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.001 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.001 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 0.002 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.002 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 86.2 bits (212), Expect = 7e-19
Identities = 70/409 (17%), Positives = 137/409 (33%), Gaps = 46/409 (11%)
Query: 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSN 94
+ + + K N + + ++ ++T L R + V +L ++ SN
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSN 75
Query: 95 NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
N NLT L + ++NN + L++ L + + +
Sbjct: 76 NQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKG 214
+ +S N + + L L+NL+ ++ + + +N +
Sbjct: 134 LNRLE----LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189
Query: 215 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274
+ +A L + +L +N++ P I +NL L L GN L+ L L L
Sbjct: 190 ISVLAKLTNLE--SLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNL 243
Query: 275 SIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVEL 334
+ +DL+ N+++ P + + ++ L
Sbjct: 244 TDLDLANNQISNLAPLS----------------------GLTKLTELKLGANQISNISPL 281
Query: 335 HFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSN 394
+ I SNL + L L N S P + L ++ L +N
Sbjct: 282 AGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 338
Query: 395 NLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443
N +S S +NL I L N++S P L L ++ ++
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 77.3 bits (189), Expect = 6e-16
Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 19/200 (9%)
Query: 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTG 74
L ++N S P I L L ++ N + ++ + LT LDL+ N +
Sbjct: 201 SLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 255
Query: 75 KLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTL 134
P +S L L L N LT L +L L+ N L +
Sbjct: 256 LAP---LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNLKN-- 308
Query: 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL- 193
L L + N +S P + + + L L + N + L NL ++ ++ N +
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364
Query: 194 --ISLSNLSFVKHIYLQNNA 211
L+NL+ + + L + A
Sbjct: 365 DLTPLANLTRITQLGLNDQA 384
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 71.2 bits (173), Expect = 5e-14
Identities = 39/186 (20%), Positives = 68/186 (36%), Gaps = 16/186 (8%)
Query: 6 PNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTIL 65
P L L ++ N L L LD++ N P + + +LT L
Sbjct: 214 PLGILTNLDELSLNGNQLKD--IGTLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTEL 268
Query: 66 DLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKM 125
L N + P +++ +L+ N + NL +L L L N+ S
Sbjct: 269 KLGANQISNISPLAGLTALTNLEL-----NENQLEDISPISNLKNLTYLTLYFNNISDIS 323
Query: 126 TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185
L+ L+ L +NN +S + N + ++ L N + P L NL +
Sbjct: 324 PVSSLTK--LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 377
Query: 186 IDLSEN 191
+ L++
Sbjct: 378 LGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 59.2 bits (142), Expect = 5e-10
Identities = 59/312 (18%), Positives = 103/312 (33%), Gaps = 44/312 (14%)
Query: 12 KLRHLDISSNNFSGKLP----ENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDL 67
L ++ S+N + P L I + +
Sbjct: 67 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126
Query: 68 SRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYM-------NLTDLGSLYLDNNH 120
N T + S+ +S + F N + NLT L L + +N
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186
Query: 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNL 180
S L++ L +NN +S P I + L L ++ N L+ L +L
Sbjct: 187 VSDISVLAKLTNL--ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASL 240
Query: 181 KSLEFIDLSEN---SLISLSNLSFVKHIYLQNNAIKGLIPIALLRSST------------ 225
+L +DL+ N +L LS L+ + + L N I + P+A L + T
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300
Query: 226 --------LLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIM 277
L L L N + P ++ + L L N + + L L ++ +
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWL 356
Query: 278 DLSRNRLNGPIP 289
N+++ P
Sbjct: 357 SAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 55.8 bits (133), Expect = 5e-09
Identities = 45/331 (13%), Positives = 95/331 (28%), Gaps = 60/331 (18%)
Query: 176 QLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK 235
L+ + +L+ L S+ + L+ + I NN + + P+ L + ++
Sbjct: 42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 101
Query: 236 LFGRIPHQINERSNLHVLLLRGNYLQGRIP----------NQLCQLRKLSIMDLSRNRLN 285
+ + N + + N + + LS + +
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161
Query: 286 GPIPS---CLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQV 342
G + L N+ + + + Q+ +
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221
Query: 343 GAKFVTKNRYEFFIG-SNLNYMAGLDLSGNEFSGEIP----------------------- 378
+ N+ + ++L + LDL+ N+ S P
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL 281
Query: 379 -------------------WKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRN 419
I L+N+ L L N +S P S+L ++ L + N
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 339
Query: 420 KLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
K+S L L ++ + +N +S P
Sbjct: 340 KVSD--VSSLANLTNINWLSAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 55.0 bits (131), Expect = 9e-09
Identities = 52/319 (16%), Positives = 105/319 (32%), Gaps = 44/319 (13%)
Query: 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN 70
D++ L + + L ++ S N P + + +L + ++ N
Sbjct: 44 DQVTTLQADRLGIKS--IDGVE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN 98
Query: 71 NFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD------------N 118
P +++ L + + +N +L S +
Sbjct: 99 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 158
Query: 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQL- 177
F ++TD + L + + + + + L L+ + N + P+ +
Sbjct: 159 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 218
Query: 178 NNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237
NL L + +L++L+ + + L NN I L P++ L L L L N++
Sbjct: 219 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK--LTELKLGANQIS 276
Query: 238 GRIP--------------------HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIM 277
P I+ NL L L N + P + L KL +
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 334
Query: 278 DLSRNRLNGPIPSCLGNVP 296
+ N+++ S L N+
Sbjct: 335 FFANNKVSD--VSSLANLT 351
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 49.6 bits (117), Expect = 5e-07
Identities = 47/284 (16%), Positives = 92/284 (32%), Gaps = 32/284 (11%)
Query: 187 DLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246
D N + + + L+ L + + L + TL + + +
Sbjct: 9 DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQ--VTTLQADRLGI--KSIDGVEY 64
Query: 247 RSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDS 306
+NL + N L P L L KL + ++ N++ P ++
Sbjct: 65 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122
Query: 307 SEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFF----------- 355
++ N+ + SS + L Q + +
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182
Query: 356 ---------IGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFS 406
+ + L + L + N+ S P I N+ L+L+ N L + +
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLA 238
Query: 407 NLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIP 450
+L + LDL+ N++S P L+ L L+ + N +S P
Sbjct: 239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 280
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.0 bits (175), Expect = 2e-14
Identities = 43/297 (14%), Positives = 87/297 (29%), Gaps = 33/297 (11%)
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN 191
+L++ NN ++ N L L++ N + P L LE + LS+N
Sbjct: 30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 192 SLISLSNLSFVKHIYLQ--NNAIKGLIPIAL--LRSSTLLTLDLRDNKLFGRIPHQINER 247
L L L+ N I + L ++ L K G
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS 307
L + + + L +L L N++ + L + + +S
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNS 206
Query: 308 EFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLD 367
N + + L+ + + + G + Y+ +
Sbjct: 207 ISAVDNGSLANTPH------LRELHLNNNKLVKVPGGLA------------DHKYIQVVY 248
Query: 368 LSGNEFSG------EIPWKIGQLQNIRALNLSNNLLS--GAIPESFSNLKMIESLDL 416
L N S P + + ++L +N + P +F + + ++ L
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.5 bits (171), Expect = 5e-14
Identities = 52/290 (17%), Positives = 101/290 (34%), Gaps = 18/290 (6%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
L ++P LD+ +N + + + L L + N P + + +
Sbjct: 22 LEKVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVK 80
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
L L LS+N LP + + L + +F N +N + L +
Sbjct: 81 LERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKS 138
Query: 122 SGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLK 181
SG L + +++ ++ IP G L+ L + N + L L
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLN 195
Query: 182 SLEFIDLSENSLISLSNLSFVKHIYL----QNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237
+L + LS NS+ ++ N S +L NN +P L + + L +N +
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 255
Query: 238 G------RIPHQINERSNLHVLLLRGNYLQGR--IPNQLCQLRKLSIMDL 279
P ++++ + L N +Q P+ + + + L
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.6 bits (148), Expect = 5e-11
Identities = 45/251 (17%), Positives = 83/251 (33%), Gaps = 30/251 (11%)
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120
L ++ S K+P+ + LDL NN ++ NL +L +L L NN
Sbjct: 11 HLRVVQCSDLGLE-KVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66
Query: 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQ---------- 170
S L L +S N L L V ++
Sbjct: 67 ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126
Query: 171 -------------GNIPVQLNNLKSLEFIDLSENSLISL--SNLSFVKHIYLQNNAIKGL 215
G +K L +I +++ ++ ++ + ++L N I +
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV 186
Query: 216 IPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLS 275
+L + L L L N + + +L L L N L ++P L + +
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 245
Query: 276 IMDLSRNRLNG 286
++ L N ++
Sbjct: 246 VVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.2 bits (147), Expect = 7e-11
Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 4/228 (1%)
Query: 223 SSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
LDL++NK+ NLH L+L N + P L KL + LS+N
Sbjct: 30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 283 RLNGPIPSCLGNVPFWREATDDDSS---EFFYANNVDSPVAYYNSSLELQLPVELHFRQD 339
+L + R ++ + F N V + L+ F+
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 340 QQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSG 399
+++ + + L L GN+ + + L N+ L LS N +S
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209
Query: 400 AIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSG 447
S +N + L L+ NKL ++P L + ++ + NN+S
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.5 bits (127), Expect = 2e-08
Identities = 34/236 (14%), Positives = 73/236 (30%), Gaps = 21/236 (8%)
Query: 248 SNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSS 307
+ +L L+ N + L+ L + L N+++ P +
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER------- 83
Query: 308 EFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLD 367
+ + L+ Q+ +V +TK R F G N + L
Sbjct: 84 -----------LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 132
Query: 368 LSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPP 427
+ + SG ++ + + +++ ++ +L L L NK++
Sbjct: 133 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAA 189
Query: 428 QLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIKRKCSSALT 483
L LN L+ +S+N++S + N+ L +
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 245
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 72.1 bits (175), Expect = 2e-14
Identities = 52/267 (19%), Positives = 85/267 (31%), Gaps = 10/267 (3%)
Query: 222 RSSTLLTLDLRDNKLFGR--IPHQINERSNLHVLLLRGNY-LQGRIPNQLCQLRKLSIMD 278
++ + LDL L IP + L+ L + G L G IP + +L +L +
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 279 LSRNRLNGPI------PSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPV 332
++ ++G I L + F A + + + + + +P
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 333 ELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNL 392
+ N +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 393 SNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDK 452
K + LDL N++ G +P LT+L FL + NVS+NNL G IP
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Query: 453 EQFATFDDCSYKGNSALCGSMIKRKCS 479
FD +Y N LCGS + C+
Sbjct: 288 GNLQRFDVSAYANNKCLCGSPLP-ACT 313
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 59.8 bits (143), Expect = 2e-10
Identities = 57/263 (21%), Positives = 89/263 (33%), Gaps = 31/263 (11%)
Query: 37 KLIYLDMSKNNFEGN--IPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSN 94
++ LD+S N IP S+ + L L + N P ++ L +L +++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 95 NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
N G + + L +L N SG + + S L + N +SG IP G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL--------------------- 193
+FS L + +L F+DLS N L
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 194 -------ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINE 246
+ + + L+NN I G +P L + L +L++ N L G IP Q
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGN 289
Query: 247 RSNLHVLLLRGNYLQGRIPNQLC 269
V N P C
Sbjct: 290 LQRFDVSAYANNKCLCGSPLPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 54.8 bits (130), Expect = 8e-09
Identities = 37/184 (20%), Positives = 56/184 (30%), Gaps = 4/184 (2%)
Query: 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSR 69
L LD S N SG LP ++ + + N G IP S G +L
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGI-TFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 70 NNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGL 129
N + + + N + +
Sbjct: 183 RNRLT--GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 130 LSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLS 189
S L L++ NN + G +P + L L +S N L G IP Q NL+ + +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYA 299
Query: 190 ENSL 193
N
Sbjct: 300 NNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT 73
LD+ +N G LP+ L + L L++S NN G IP G ++ + + N
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCL 304
Query: 74 GKLPRPIVS 82
P P +
Sbjct: 305 CGSPLPACT 313
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.8 bits (169), Expect = 6e-14
Identities = 48/277 (17%), Positives = 78/277 (28%), Gaps = 13/277 (4%)
Query: 15 HLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTG 74
+P I + + N S + LTIL L N
Sbjct: 15 TTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70
Query: 75 KLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTL 134
L N + L L +L+LD
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
Query: 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194
L+ L + +N L + L+ L + N + L SL+ + L +N +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 195 SLSNLSF-----VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSN 249
+ +F + +YL N + L AL L L L DN +
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAW 249
Query: 250 LHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNG 286
L + + +P +L + L+ N L G
Sbjct: 250 LQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.5 bits (163), Expect = 4e-13
Identities = 47/298 (15%), Positives = 89/298 (29%), Gaps = 51/298 (17%)
Query: 132 STLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSEN 191
+ + + N +S L++L + N L L LE +DLS+N
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 192 SLIS------LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQIN 245
+ + L + ++L ++ L P + L L L+DN L
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150
Query: 246 ERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDD 305
+ NL L L GN + L L + L +NR+ P ++
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT----- 205
Query: 306 SSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAG 365
+ N S + + L
Sbjct: 206 ---LYLFANNLSALPTEALAPLRALQY--------------------------------- 229
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSG 423
L L+ N + + ++ S++ + ++P+ + + L+ N L G
Sbjct: 230 LRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.2 bits (157), Expect = 3e-12
Identities = 50/266 (18%), Positives = 86/266 (32%), Gaps = 10/266 (3%)
Query: 2 LPRLPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKE 61
L +P + + + N S +P + L L + N + +
Sbjct: 23 LQAVPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 62 LTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHF 121
L LDLS N + L L L + L L LYL +N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 122 SGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLK 181
D L L + N +S L LL+ +N + P +L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 182 SLEFIDLSENSLISL-----SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
L + L N+L +L + L ++++ L +N L + L +++
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW-LQKFRGSSSEV 260
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQG 262
+P ++ + + L N LQG
Sbjct: 261 PCSLPQRL---AGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 2e-07
Identities = 39/198 (19%), Positives = 67/198 (33%), Gaps = 6/198 (3%)
Query: 109 TDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168
++L N S + L +L + +N+L+ ++L L +S+N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 169 LQGNI-PVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQN-----NAIKGLIPIALLR 222
++ P + L L + L L L F LQ NA++ L
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 223 SSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
L L L N++ +L LLL N + P+ L +L + L N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 283 RLNGPIPSCLGNVPFWRE 300
L+ L + +
Sbjct: 212 NLSALPTEALAPLRALQY 229
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 5e-07
Identities = 48/233 (20%), Positives = 83/233 (35%), Gaps = 10/233 (4%)
Query: 63 TILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFS 122
+ +P I ++ + L N ++ +L L+L +N +
Sbjct: 14 VTTSCPQQGLQ-AVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69
Query: 123 GKMTDGLLSSTLLRVLNVSNNMLSGDI-PHWIGNFSVLSVLLMSENYLQGNIPVQLNNLK 181
LL L++S+N + P L L + LQ P L
Sbjct: 70 RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129
Query: 182 SLEFIDLSENSLISLSNLSF-----VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKL 236
+L+++ L +N+L +L + +F + H++L N I + A +L L L N++
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 237 FGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP 289
PH + L L L N L L LR L + L+ N
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 44/270 (16%), Positives = 76/270 (28%), Gaps = 21/270 (7%)
Query: 186 IDLSENSLISL-SNL-SFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 243
+ L ++ + + + I+L N I + + L L L N L
Sbjct: 16 TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 244 INERSNLHVLLLRGNYLQGRI-PNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREAT 302
+ L L L N + P L +L + L R L P
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL----------- 124
Query: 303 DDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNY 362
F + N+ L + + L+
Sbjct: 125 ------FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 363 MAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLS 422
+ L L N + P L + L L N LS E+ + L+ ++ L L+ N
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
Query: 423 GQIPPQLTELNFLSNFNVSYNNLSGPIPDK 452
+L F S + + +P +
Sbjct: 239 CDCRA-RPLWAWLQKFRGSSSEVPCSLPQR 267
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 3e-05
Identities = 40/258 (15%), Positives = 74/258 (28%), Gaps = 11/258 (4%)
Query: 223 SSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRN 282
+ +T L +P I + + L GN + R L+I+ L N
Sbjct: 10 NEPKVTTSCPQQGL-QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN 66
Query: 283 RLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQD--- 339
L + + + D+++ + +L L
Sbjct: 67 VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126
Query: 340 --QQVGAKFVTKNRYEFFIGSNLNYMAG---LDLSGNEFSGEIPWKIGQLQNIRALNLSN 394
+ ++ N + + L L GN S L ++ L L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 395 NLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQ 454
N ++ P +F +L + +L L N LS L L L ++ N +
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246
Query: 455 FATFDDCSYKGNSALCGS 472
+A + C
Sbjct: 247 WAWLQKFRGSSSEVPCSL 264
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.0 bits (156), Expect = 7e-12
Identities = 50/446 (11%), Positives = 106/446 (23%), Gaps = 26/446 (5%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEG----NIPYSVGEMKELTILDLS 68
++ LDI S L + Q+ + + +I ++ L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 69 RNNFTGKLPRPIV----SSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK 124
N ++ + + L L N G + + +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123
Query: 125 MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLE 184
+ D L +L+ + + + + + L + ++N E
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183
Query: 185 FIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI 244
+ S ++ +L +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243
Query: 245 NERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDD 304
E + + + + R + + S GN A
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303
Query: 305 DSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMA 364
+ ++S S + + N G
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363
Query: 365 G---------LDLSGNEFSGE----IPWKIGQLQNIRALNLSNNLLSGAIPESFS----- 406
L L+ + S + + ++R L+LSNN L A
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 407 NLKMIESLDLSRNKLSGQIPPQLTEL 432
++E L L S ++ +L L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (128), Expect = 2e-08
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 366 LDLSGNEFSGE-IPWKIGQLQNIRALNLSNNLLSG----AIPESFSNLKMIESLDLSRNK 420
LD+ E S + LQ + + L + L+ I + + L+L N+
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 421 LSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDC 461
L + + + + +L
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 107
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (95), Expect = 2e-04
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 386 NIRALNLSNNLLSGA-IPESFSNLKMIESLDLSRNKLSGQ----IPPQLTELNFLSNFNV 440
+I++L++ LS A E L+ + + L L+ I L L+ N+
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 441 SYNNLSG 447
N L
Sbjct: 63 RSNELGD 69
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 9/101 (8%)
Query: 61 ELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNF----YGQLFPNYMNLTDLGSLYL 116
++ LD+ + ++ + L + + L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 117 DNNHFSGKMTDGLLS-----STLLRVLNVSNNMLSGDIPHW 152
+N +L S ++ L++ N L+G
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 5e-04
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 385 QNIRALNLSNNLLSG----AIPESFSNLKMIESLDLSRNKLSGQIPPQLTE-----LNFL 435
+R L L++ +S ++ + + LDLS N L QL E L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 436 SNFNVSYNNLSGPIPD 451
+ S + D
Sbjct: 429 EQLVLYDIYWSEEMED 444
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.001
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 196 LSNLSFVKHIYLQNNAIKGL----IPIALLRSSTLLTLDLRDNKLFGRIPHQI-----NE 246
S ++ ++L + + + LL + +L LDL +N L Q+
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 247 RSNLHVLLLRGNYLQGRIPNQLCQLRK 273
L L+L Y + ++L L K
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEK 451
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.003
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 104 NYMNLTDLGSLYLDNNHFSGK----MTDGLLSSTLLRVLNVSNNMLSGDIPHWIG----- 154
+ L L+L + S + LL++ LR L++SNN L +
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLK 181
+L L++ + Y + +L L+
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.003
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIF---QKLIYLDMSKNNFEGNIPYSVGE-----MKELT 63
LR L ++ + S +L L LD+S N + E L
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 64 ILDLSRNNFTGKLPR 78
L L ++ ++
Sbjct: 430 QLVLYDIYWSEEMED 444
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.0 bits (141), Expect = 2e-10
Identities = 40/202 (19%), Positives = 70/202 (34%), Gaps = 12/202 (5%)
Query: 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNF 72
++ N + LP + + + L +S+N ++ LT L+L R
Sbjct: 12 HLEVNCDKRNLT-ALPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 73 TGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSS 132
+ V L + ++N L L L L + N + L
Sbjct: 68 ----TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 133 TLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENS 192
L+ L + N L P + L L ++ N L LN L++L+ + L ENS
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 193 LISL----SNLSFVKHIYLQNN 210
L ++ + +L N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (134), Expect = 2e-09
Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 8/204 (3%)
Query: 222 RSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSR 281
+ ++ L ++ L +P + + +L L N L L +L+ ++L R
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 282 NRLNGPIPSC----LGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFR 337
L LG + + +N L L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 338 QDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLL 397
+ Q++ K + + + L L+ N + + L+N+ L L N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 398 SGAIPESFSNLKMIESLDLSRNKL 421
IP+ F ++ L N
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 9e-05
Identities = 50/231 (21%), Positives = 74/231 (32%), Gaps = 27/231 (11%)
Query: 55 SVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114
V ++ ++ + N T LP + L LS N Y M T L L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIP 174
LD + DG L L+ + + +
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL------------------ 102
Query: 175 VQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDN 234
+ + F L+ L +L L ++ +YL+ N +K L P L + L L L +N
Sbjct: 103 ----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 235 KLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285
L +N NL LLL+ N L IP L L N
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 27/220 (12%), Positives = 55/220 (25%), Gaps = 23/220 (10%)
Query: 178 NNLKSLEFIDLSENSLISL-SNLS-FVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNK 235
+ + S ++ + +L +L +L ++L N + L+ + L L+L +
Sbjct: 7 SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 236 LFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNV 295
L L L S L +P+
Sbjct: 67 LTKLQVDGTL--------------------PVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 296 PFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFF 355
+ T + N L + + +++
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 356 IGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNN 395
+ + L + L L N IP + L N
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 4e-04
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 358 SNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
S + ++ + +P + + + L+LS NLL + + L+L
Sbjct: 7 SKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 418 RNK 420
R +
Sbjct: 64 RAE 66
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 56.4 bits (134), Expect = 3e-09
Identities = 60/317 (18%), Positives = 94/317 (29%), Gaps = 15/317 (4%)
Query: 135 LRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLI 194
L ++N LS +P + L L+ S N L +P +LKSL + + +L
Sbjct: 40 AHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94
Query: 195 SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLL 254
L L + + + KL P + + L
Sbjct: 95 DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 255 LRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANN 314
+ I + + E + YA+N
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 315 VDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFS 374
L V ++ D + +T I S L+ + N S
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 375 GEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNF 434
EI ++ LN+SNN L +P L E L S N L+ ++P L
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLKQ 328
Query: 435 LSNFNVSYNNLSGPIPD 451
L +V YN L PD
Sbjct: 329 L---HVEYNPLRE-FPD 341
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.1 bits (97), Expect = 1e-04
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIP 174
N S ++ L LNVSNN L ++P L L+ S N+L +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVP 320
Query: 175 VQLNNLKSLEFIDLSENSLISLSNL-SFVKHIYLQN 209
NLK L + N L ++ V+ + + +
Sbjct: 321 ELPQNLKQL---HVEYNPLREFPDIPESVEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 4e-04
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 20 SNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRP 79
N S +L + L L++S N +P L L S N+
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLAE----- 318
Query: 80 IVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118
+ +L L + N FP+ + L +++
Sbjct: 319 VPELPQNLKQLHVEYNPLRE--FPDI--PESVEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.7 bits (88), Expect = 0.001
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 204 HIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGR 263
NA I +L L++ +NKL +P L L+ N+L
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALP---PRLERLIASFNHLA-E 318
Query: 264 IPNQLCQLRKLSIMDLSRNRLNG--PIPSCLGN 294
+P L++L + N L IP + +
Sbjct: 319 VPELPQNLKQL---HVEYNPLREFPDIPESVED 348
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.9 bits (86), Expect = 0.002
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
L L++S+N +LP +L L S N+ +P + L L + N
Sbjct: 285 SLEELNVSNNKLI-ELPALPP----RLERLIASFNHLA-EVP---ELPQNLKQLHVEYNP 335
Query: 72 FTGKLPRPIVSSCLSLDWLDLSN 94
S++ L +++
Sbjct: 336 LRE-----FPDIPESVEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.9 bits (86), Expect = 0.002
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 164 MSENYLQGNIPVQLNNLKSLEFIDLSENSLISL-SNLSFVKHIYLQNNAIKGLIPIALLR 222
N I + SLE +++S N LI L + ++ + N + + +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPEL---- 322
Query: 223 SSTLLTLDLRDNKLFGRIPHQINERSNLHV 252
L L + N L P +L +
Sbjct: 323 PQNLKQLHVEYNPL-REFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.1 bits (84), Expect = 0.004
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGD 148
N ++ L L + NN L L L S N L+ +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPR--LERLIASFNHLA-E 318
Query: 149 IPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEF 185
+P N L L + N L+ P +++ L
Sbjct: 319 VPELPQN---LKQLHVEYNPLRE-FPDIPESVEDLRM 351
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (133), Expect = 3e-09
Identities = 38/282 (13%), Positives = 81/282 (28%), Gaps = 17/282 (6%)
Query: 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT 73
+ LD++ N + L + Q +I ++ + + + + +DLS +
Sbjct: 3 QTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIE 59
Query: 74 GKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSST 133
I+S C L L L + ++L L L + L S+
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119
Query: 134 LLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL 193
R+ ++ + + +++ L G + S
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR------ 173
Query: 194 ISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD-NKLFGRIPHQINERSNLHV 252
+ V + +K + + L L L + ++ E L
Sbjct: 174 ----CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 229
Query: 253 LLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294
L + G G + L L ++ + +GN
Sbjct: 230 LQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIARPTIGN 268
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 8e-07
Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 9/187 (4%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+++H+D+S++ + KL L + I ++ + L L+LS +
Sbjct: 47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106
Query: 72 FTGKLPRPIVSSCLSL--------DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSG 123
+ + S S + + + S Y N S
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166
Query: 124 KMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE-NYLQGNIPVQLNNLKS 182
T L+ + + ML D + L L +S + ++L + +
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226
Query: 183 LEFIDLS 189
L+ + +
Sbjct: 227 LKTLQVF 233
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 7e-05
Identities = 37/268 (13%), Positives = 79/268 (29%), Gaps = 18/268 (6%)
Query: 186 IDLSENSLI--SLSNLSFVKHIYLQ-NNAIKGLIPIALLRSSTLLTLDLRDNKLFGR-IP 241
+DL+ +L L I + + + +DL ++ + +
Sbjct: 5 LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64
Query: 242 HQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREA 301
+++ S L L L G L I N L + L ++ + C G F +
Sbjct: 65 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN---------LSGCSGFSEFALQT 115
Query: 302 TDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN 361
S N V Q G + + +
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175
Query: 362 YMAGLDLSGNE-FSGEIPWKIGQLQNIRALNLSN-NLLSGAIPESFSNLKMIESLDLSRN 419
+ LDLS + + + QL ++ L+LS + + +++L +
Sbjct: 176 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235
Query: 420 KLSGQIPPQLTELNFLSNFNVSYNNLSG 447
G + L + ++ ++ +
Sbjct: 236 VPDGTLQ---LLKEALPHLQINCSHFTT 260
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 49.6 bits (117), Expect = 2e-07
Identities = 30/227 (13%), Positives = 63/227 (27%), Gaps = 11/227 (4%)
Query: 191 NSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNL 250
N + L+ I + + + A L + TL + + +NL
Sbjct: 10 NVIFPDPALANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGV--TTIEGVQYLNNL 65
Query: 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFF 310
L L+ N + P + + + + I +T
Sbjct: 66 IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL 125
Query: 311 YANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSG 370
+ + + + P+ + S L +
Sbjct: 126 AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL---KADD 182
Query: 371 NEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLS 417
N+ S P + L N+ ++L NN +S P +N + + L+
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 47.3 bits (111), Expect = 1e-06
Identities = 31/216 (14%), Positives = 66/216 (30%), Gaps = 24/216 (11%)
Query: 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSN 94
I + K+N + + ++ +T L T V +L L+L +
Sbjct: 18 LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKD 72
Query: 95 NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
N + L + + TL ++ +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 155 NFSVLSVLLMSENYL--------------QGNIPVQLNNLKSLEFIDLSEN---SLISLS 197
+ + + + L Q + L NL L + +N + L+
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192
Query: 198 NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233
+L + ++L+NN I + P+A + L + L +
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLANTSN--LFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 16/234 (6%)
Query: 208 QNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQ 267
Q AI + P L + + + + + + + + L G + I
Sbjct: 5 QPTAINVIFPDPALAN--AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IEG- 58
Query: 268 LCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLE 327
+ L L ++L N++ P E + + + S +S +
Sbjct: 59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118
Query: 328 LQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNI 387
+ L + QV + + + N LS + L +
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQ---YLSIGNAQVSDLTPLANLSKL 175
Query: 388 RALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIP----PQLTELNFLSN 437
L +N +S P ++L + + L N++S P L + L+N
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVT-LTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.003
Identities = 32/208 (15%), Positives = 58/208 (27%), Gaps = 19/208 (9%)
Query: 5 LPNAKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTI 64
+ A D + L + E + LI L++ N P
Sbjct: 35 VTQADLDGITTLSAFGTGVTT--IEGVQ-YLNNLIGLELKDNQITDLAPLKNLTKITELE 91
Query: 65 LDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGK 124
L + + L L +++ L + DL + +
Sbjct: 92 LSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT 151
Query: 125 MTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLE 184
+S + N S L+ L +N + P L +L +L
Sbjct: 152 NLQ-----------YLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLI 198
Query: 185 FIDLSEN---SLISLSNLSFVKHIYLQN 209
+ L N + L+N S + + L N
Sbjct: 199 EVHLKNNQISDVSPLANTSNLFIVTLTN 226
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 45.0 bits (105), Expect = 7e-06
Identities = 27/206 (13%), Positives = 70/206 (33%), Gaps = 11/206 (5%)
Query: 212 IKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQL 271
IK + + +L+ + + NE +++ ++ + ++ + L
Sbjct: 14 IKQIFSDDAFAE--TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYL 67
Query: 272 RKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLP 331
++ + L+ N+L L N+ D++ ++ D S +
Sbjct: 68 PNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125
Query: 332 VELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALN 391
Q+ + ++ N+ + + +I + L ++ L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 184
Query: 392 LSNNLLSGAIPESFSNLKMIESLDLS 417
LS N +S + + LK ++ L+L
Sbjct: 185 LSKNHISD--LRALAGLKNLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 44.6 bits (104), Expect = 8e-06
Identities = 30/195 (15%), Positives = 70/195 (35%), Gaps = 10/195 (5%)
Query: 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSN 94
F + I ++ K + + + E+ + + + ++ + ++ L L+
Sbjct: 23 FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNG 77
Query: 95 NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
N L +L +L + L + DI +
Sbjct: 78 NKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKG 214
+ S+ L + + +L L +L D + ++ L+ L+ ++++YL N I
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 192
Query: 215 LIPIALLRSSTLLTL 229
L +A L++ +L L
Sbjct: 193 LRALAGLKNLDVLEL 207
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 0.001
Identities = 27/206 (13%), Positives = 58/206 (28%), Gaps = 13/206 (6%)
Query: 191 NSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNL 250
+ S + L+ ++ + L S + + ++ + I N+
Sbjct: 15 KQIFSDDAFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIKSVQG--IQYLPNV 70
Query: 251 HVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFF 310
L L GN L L L + N ++ + +
Sbjct: 71 TKLFLNGNKLTDI-----KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125
Query: 311 YANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIG--SNLNYMAGLDL 368
N + + L ++ ++ I + L + L L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185
Query: 369 SGNEFSGEIPWKIGQLQNIRALNLSN 394
S N S ++ + L+N+ L L +
Sbjct: 186 SKNHIS-DLRA-LAGLKNLDVLELFS 209
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 30/230 (13%), Positives = 60/230 (26%), Gaps = 19/230 (8%)
Query: 225 TLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRL 284
+ +++K+ IP + N L L+ L +++S+N +
Sbjct: 9 SNRVFLCQESKV-TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65
Query: 285 NGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELH--------- 335
I + + + + + N ++ N L +
Sbjct: 66 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125
Query: 336 --FRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLS 393
+ + L L+ N Q
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185
Query: 394 NNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPP----QLTELNFLSNFN 439
NN L + F LD+SR ++ +P L +L S +N
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYN 234
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 4e-05
Identities = 25/248 (10%), Positives = 59/248 (23%), Gaps = 18/248 (7%)
Query: 182 SLEFIDLSENSLISL-SNLSF-VKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGR 239
S E+ + + S+L + ++ + A L +++ N +
Sbjct: 9 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68
Query: 240 IPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWR 299
I + + N L + + L +
Sbjct: 69 IEADVFSNLPKLH-----EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123
Query: 300 EATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSN 359
+ N + + V L ++ N + +
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183
Query: 360 LNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRN 419
+ +L + F G L++S + NLK + +
Sbjct: 184 SDNNNLEELPNDVFHG--------ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
Query: 420 KLSGQIPP 427
K ++P
Sbjct: 236 K---KLPT 240
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 5e-05
Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 1/141 (0%)
Query: 41 LDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQ 100
L +++ + + + + LT L + L + L L + +
Sbjct: 13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71
Query: 101 LFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLS 160
+ L L L N + +L ++ N + W+ +
Sbjct: 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEG 131
Query: 161 VLLMSENYLQGNIPVQLNNLK 181
+ + E LQ + L ++
Sbjct: 132 LGGVPEQKLQCHGQGPLAHMP 152
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 7e-04
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 2/112 (1%)
Query: 365 GLDLSGNEFSGEIPWKIGQLQNIRALNLS-NNLLSGAIPESFSNLKMIESLDLSRNKLSG 423
GL + + + + +N+ L + L L + +L + ++ L
Sbjct: 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 424 QIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMIK 475
P LS N+S+N L Q + + GN C ++
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.9 bits (95), Expect = 5e-05
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 136 RVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPV--QLNNLKSLEFIDLSENSL 193
RVL++++ L+ + + +++ L +S N L+ P L L+ L+ D + ++
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 194 ISLSNLSFVKHIYLQNNAIKGLIPIALLRS-STLLTLDLRDNKL 236
++NL ++ + L NN ++ I L S L+ L+L+ N L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.7 bits (92), Expect = 1e-04
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 6/111 (5%)
Query: 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDI 149
L L++ + + + L + L L +N L + L VL S+N L
Sbjct: 3 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD 59
Query: 150 PHWIGNFSVLSVLLMSENYLQGNIPVQ-LNNLKSLEFIDLSENSLISLSNL 199
LL+ N LQ + +Q L + L ++L NSL +
Sbjct: 60 GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 8e-04
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 24/104 (23%)
Query: 366 LDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIP---------------------ES 404
L L+ + + + + QL + L+LS+N L P +
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 405 FSNLKMIESLDLSRNKL-SGQIPPQLTELNFLSNFNVSYNNLSG 447
+NL ++ L L N+L L L N+ N+L
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.8 bits (82), Expect = 0.003
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 11/111 (9%)
Query: 64 ILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQL--FPNYMNLTDLGSLYLDNNHF 121
+L L+ + T + L + LDLS+N L L +
Sbjct: 2 VLHLAHKDLTVL---CHLEQLLLVTHLDLSHNRLRALPPALAALRCLE-----VLQASDN 53
Query: 122 SGKMTDGLLSSTLLRVLNVSNNML-SGDIPHWIGNFSVLSVLLMSENYLQG 171
+ + DG+ + L+ L + NN L + + L +L + N L
Sbjct: 54 ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.5 bits (81), Expect = 0.003
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNN 71
+ HLD+S N P + + ++ V + L L L N
Sbjct: 21 LVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 76
Query: 72 FTGKLPRPIVSSCLSLDWLDLSNNNF 97
+ SC L L+L N+
Sbjct: 77 LQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.001
Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 24/159 (15%)
Query: 107 NLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSE 166
D LD + L++ + VLN ++M + + N L L +S
Sbjct: 18 KRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSN 74
Query: 167 NYLQG--NIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSS 224
N L ++ + +L+ ++LS N L S L +K + L+
Sbjct: 75 NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE---------------- 118
Query: 225 TLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGR 263
L L N L Q S + + L G
Sbjct: 119 ---ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGH 154
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.001
Identities = 26/189 (13%), Positives = 63/189 (33%), Gaps = 10/189 (5%)
Query: 35 FQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSN 94
+ + + K N + + ++ ++T L R V +L ++ SN
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSN 71
Query: 95 NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIG 154
N + + + + + + L N ++ +
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131
Query: 155 NFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKG 214
+ S + + L G +Q N S + DL L+NL+ ++ + + +N +
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDL-----KPLANLTTLERLDISSNKVSD 186
Query: 215 LIPIALLRS 223
+ +A L +
Sbjct: 187 ISVLAKLTN 195
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 37.5 bits (85), Expect = 0.002
Identities = 24/181 (13%), Positives = 54/181 (29%), Gaps = 8/181 (4%)
Query: 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFT 73
+D + ++P + I L ++ N + + + N
Sbjct: 11 TTVDCTGRGLK-EIPRD---IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66
Query: 74 GKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSST 133
+ + L L N ++ L L +L L +N S M
Sbjct: 67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126
Query: 134 LLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL 193
L LN+++N + + L ++ + P + ++ ++ DL +
Sbjct: 127 SLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182
Query: 194 I 194
Sbjct: 183 K 183
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.9 bits (86), Expect = 0.002
Identities = 35/305 (11%), Positives = 82/305 (26%), Gaps = 19/305 (6%)
Query: 159 LSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSL---------ISLSNLSFVKHIYLQN 209
L + ++ + ++ L S++ I LS N++ ++++ ++ +
Sbjct: 10 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 210 NAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLC 269
+ LL L+ KL ++L P +
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP--LIDFLSKHTPLEHL 126
Query: 270 QLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQ 329
L + + ++ + N S + + +
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186
Query: 330 LPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIG-QLQNIR 388
L + Q+ L + D + N+R
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246
Query: 389 ALNLSNNLLSGAIPE------SFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSY 442
L L++ LLS S +++L L N++ L + ++ +
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306
Query: 443 NNLSG 447
L+G
Sbjct: 307 LELNG 311
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.98 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.97 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.96 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.95 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.94 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.93 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.91 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.88 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.87 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.86 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.81 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.81 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.8 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.8 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.78 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.78 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.77 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.77 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.76 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.7 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.61 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.61 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.6 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.59 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.58 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.57 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.56 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.49 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.43 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.41 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.39 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.52 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.43 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.86 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.82 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.24 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.22 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.98 E-value=4.9e-32 Score=258.57 Aligned_cols=258 Identities=34% Similarity=0.558 Sum_probs=210.6
Q ss_pred CCcEEEcccCcCCC--CcChhccCCCCccEEEccC-ccccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccC
Q 043235 134 LLRVLNVSNNMLSG--DIPHWIGNFSVLSVLLMSE-NYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNN 210 (515)
Q Consensus 134 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n 210 (515)
+++.|+++++.+.+ .+|..++++++|++|++++ |.+.+.+|.+++++++|++|++ ++|
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~L-------------------s~N 111 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI-------------------THT 111 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEE-------------------EEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhh-------------------ccc
Confidence 56777777777765 3566777777777777775 6677677766666655555444 444
Q ss_pred ceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC-CEEECCCCcCcCCCC
Q 043235 211 AIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL-SIMDLSRNRLNGPIP 289 (515)
Q Consensus 211 ~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-~~L~L~~n~i~~~~p 289 (515)
++.+..+..+..+..|+.+++++|.+.+.+|..+..+++++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|
T Consensus 112 ~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~ 191 (313)
T d1ogqa_ 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred cccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccc
Confidence 5566666777778888888888888888888888888889999999998888888888887776 889999998887666
Q ss_pred ccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcC
Q 043235 290 SCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLS 369 (515)
Q Consensus 290 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 369 (515)
..+.. .....++++
T Consensus 192 ~~~~~------------------------------------------------------------------l~~~~l~l~ 205 (313)
T d1ogqa_ 192 PTFAN------------------------------------------------------------------LNLAFVDLS 205 (313)
T ss_dssp GGGGG------------------------------------------------------------------CCCSEEECC
T ss_pred ccccc------------------------------------------------------------------ccccccccc
Confidence 55432 123468899
Q ss_pred CCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccC
Q 043235 370 GNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPI 449 (515)
Q Consensus 370 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 449 (515)
++...+.+|..+..+++++.+++++|.+.+.++ .+..+++|+.|+|++|++++.+|..+.++++|++|+|++|+++|.+
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i 284 (313)
T d1ogqa_ 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence 999998999999999999999999999986654 6889999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCcccccCCCCCCCCccCCCC
Q 043235 450 PDKEQFATFDDCSYKGNSALCGSMIKRKC 478 (515)
Q Consensus 450 p~~~~~~~l~~~~~~gn~~~c~~~l~~~~ 478 (515)
|+...+++++.+++.||+.+||.|++ .|
T Consensus 285 P~~~~L~~L~~l~l~~N~~l~g~plp-~c 312 (313)
T d1ogqa_ 285 PQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence 99888999999999999999999986 55
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.97 E-value=1.8e-29 Score=247.88 Aligned_cols=353 Identities=24% Similarity=0.254 Sum_probs=200.1
Q ss_pred EeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCc
Q 043235 16 LDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNN 95 (515)
Q Consensus 16 L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n 95 (515)
..++.+.+++.+... . +.+|++|+++++.|+. + +.+..+++|++|++++|+++ .++. ++++++|++|++++|
T Consensus 27 ~~l~~~~~~~~~~~~--~-l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n 98 (384)
T d2omza2 27 TVLGKTNVTDTVSQT--D-LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNN 98 (384)
T ss_dssp HHTTCSSTTSEECHH--H-HTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSS
T ss_pred HHhCCCCCCCccCHH--H-hCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCC-CCcc--ccCCccccccccccc
Confidence 356666776555432 2 5688899998888874 2 45778888999999999888 6764 578888999999988
Q ss_pred cccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccc
Q 043235 96 NFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPV 175 (515)
Q Consensus 96 ~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (515)
++.+. ..++++++|+.|+++++.+++..+ ......+.......|.+....+.................. ..
T Consensus 99 ~i~~i--~~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~ 169 (384)
T d2omza2 99 QIADI--TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-----LK 169 (384)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CG
T ss_pred ccccc--cccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccch-----hh
Confidence 88753 347888889999988888875433 3445667777777776654333222222222221111111 11
Q ss_pred cccCCCCCcEEeCCCCCCCC---cCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCE
Q 043235 176 QLNNLKSLEFIDLSENSLIS---LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHV 252 (515)
Q Consensus 176 ~l~~l~~L~~L~L~~n~l~~---l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 252 (515)
.+.............|.... ...++.++.+++++|.+++..+ +..+++|++|++++|+++.. ..+..+++|+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 245 (384)
T d2omza2 170 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTD 245 (384)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred hhccccccccccccccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccch
Confidence 22333333334444433322 1234455555555555554432 23344555555555555432 24455555555
Q ss_pred EEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCcc
Q 043235 253 LLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPV 332 (515)
Q Consensus 253 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (515)
|++++|++++.. .+..+++|++|++++|++.+..+ +..++.+.......
T Consensus 246 L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~--------------------------- 294 (384)
T d2omza2 246 LDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE--------------------------- 294 (384)
T ss_dssp EECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS---------------------------
T ss_pred hccccCccCCCC--cccccccCCEeeccCcccCCCCc--cccccccccccccc---------------------------
Confidence 555555555322 24455555555555555543211 11111110000000
Q ss_pred ccccccccccceeeeccCccc-cccccccccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCC
Q 043235 333 ELHFRQDQQVGAKFVTKNRYE-FFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMI 411 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 411 (515)
+... ......+++++.|++++|++++.. .+..+++|++|++++|++++ ++ .+.++++|
T Consensus 295 -----------------n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L 353 (384)
T d2omza2 295 -----------------NQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNI 353 (384)
T ss_dssp -----------------SCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTC
T ss_pred -----------------cccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCC
Confidence 0000 000022566777777777777543 26677777777777777763 33 47777777
Q ss_pred CeeeCCCCcccccCCccccCCCCCCEEecccC
Q 043235 412 ESLDLSRNKLSGQIPPQLTELNFLSNFNVSYN 443 (515)
Q Consensus 412 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N 443 (515)
++|++++|++++..| +.++++|+.|+|++|
T Consensus 354 ~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 777777777775443 677777777777776
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.97 E-value=1.7e-29 Score=248.04 Aligned_cols=357 Identities=21% Similarity=0.253 Sum_probs=270.0
Q ss_pred EECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCC
Q 043235 41 LDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNH 120 (515)
Q Consensus 41 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 120 (515)
..++.+.+++.+. ...+.+|++|+++++.|+ .++ + +..+++|++|++++|+|++.. .++++++|++|++++|+
T Consensus 27 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~-~l~-g-l~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~ 99 (384)
T d2omza2 27 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-G-VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQ 99 (384)
T ss_dssp HHTTCSSTTSEEC--HHHHTTCCEEECCSSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred HHhCCCCCCCccC--HHHhCCCCEEECCCCCCC-Ccc-c-cccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccc
Confidence 3566677765433 356789999999999998 675 3 478999999999999998643 49999999999999999
Q ss_pred CCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCCCC
Q 043235 121 FSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSNLS 200 (515)
Q Consensus 121 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~ 200 (515)
+.+.. .+..+++|+.|+++++.+++..+ ......+.......|.+....+.....................+....
T Consensus 100 i~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (384)
T d2omza2 100 IADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT 175 (384)
T ss_dssp CCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCT
T ss_pred ccccc--ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhcccc
Confidence 98543 48899999999999999985433 445667788888888776544444444444445555555555555666
Q ss_pred cccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECC
Q 043235 201 FVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLS 280 (515)
Q Consensus 201 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 280 (515)
.........|.... ...+..+++++.+++++|.+++..+ +...++|++|++++|++++. ..+..+++|+.++++
T Consensus 176 ~~~~~~~~~~~~~~--~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 249 (384)
T d2omza2 176 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 249 (384)
T ss_dssp TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred cccccccccccccc--ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccc
Confidence 66666666666543 4567788999999999999987654 56678999999999999853 468899999999999
Q ss_pred CCcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCcccccccccc
Q 043235 281 RNRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNL 360 (515)
Q Consensus 281 ~n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 360 (515)
+|.+++..+ +..++.++.+........ . ......+
T Consensus 250 ~n~l~~~~~--~~~~~~L~~L~l~~~~l~-----------------------------------------~--~~~~~~~ 284 (384)
T d2omza2 250 NNQISNLAP--LSGLTKLTELKLGANQIS-----------------------------------------N--ISPLAGL 284 (384)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCC-----------------------------------------C--CGGGTTC
T ss_pred cCccCCCCc--ccccccCCEeeccCcccC-----------------------------------------C--CCccccc
Confidence 999986443 555555544322110000 0 0011336
Q ss_pred ccCCEEEcCCCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEec
Q 043235 361 NYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNV 440 (515)
Q Consensus 361 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 440 (515)
+.++.+++++|.+.+. ..+..+++++.|++++|++++.. .+..+++|++|++++|++++ ++ .+.++++|++|++
T Consensus 285 ~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l 358 (384)
T d2omza2 285 TALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSA 358 (384)
T ss_dssp TTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEEC
T ss_pred cccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEEC
Confidence 7889999999999853 35888999999999999999654 38899999999999999984 44 6899999999999
Q ss_pred ccCcccccCCCCcccCCCCcccccCC
Q 043235 441 SYNNLSGPIPDKEQFATFDDCSYKGN 466 (515)
Q Consensus 441 s~N~l~~~~p~~~~~~~l~~~~~~gn 466 (515)
++|++++..| ...+..++.+.+.+|
T Consensus 359 ~~N~l~~l~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 359 GHNQISDLTP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp CSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred CCCcCCCChh-hccCCCCCEeeCCCC
Confidence 9999998765 566788888888776
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=8.2e-30 Score=243.01 Aligned_cols=246 Identities=29% Similarity=0.427 Sum_probs=156.0
Q ss_pred CCcEEECcCCcccc--cCCccccCCCCCCEEECcC-CcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCE
Q 043235 37 KLIYLDMSKNNFEG--NIPYSVGEMKELTILDLSR-NNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGS 113 (515)
Q Consensus 37 ~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 113 (515)
++++|+|+++.+++ .+|..++++++|++|+|++ |+++|.+|..+ .++++|++|++++|++.+..+..+..+.+|++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhcc
Confidence 45556666655554 2455566666666666654 45555555553 45666666666666665555555555666666
Q ss_pred EEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCc-cEEEccCccccccccccccCCCCCcEEeCCCCC
Q 043235 114 LYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVL-SVLLMSENYLQGNIPVQLNNLKSLEFIDLSENS 192 (515)
Q Consensus 114 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 192 (515)
+++++|.+.+..|..+..++.++++++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+..+ .++++.+.
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~ 208 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 6666666555555566666666666666666655555555555553 556666666665555555544333 45555544
Q ss_pred CC-----CcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCcc
Q 043235 193 LI-----SLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQ 267 (515)
Q Consensus 193 l~-----~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 267 (515)
.. .+..++.++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|.++..+++|++|+|++|++++.+|.
T Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~- 286 (313)
T d1ogqa_ 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ- 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-
Confidence 31 11244556666666677666544 567778888888888888888888888888888888888888877774
Q ss_pred ccCCCCCCEEECCCCc-CcC
Q 043235 268 LCQLRKLSIMDLSRNR-LNG 286 (515)
Q Consensus 268 ~~~l~~L~~L~L~~n~-i~~ 286 (515)
+..+++|+.+++++|+ +.|
T Consensus 287 ~~~L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 287 GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp STTGGGSCGGGTCSSSEEES
T ss_pred cccCCCCCHHHhCCCccccC
Confidence 5677888888888887 444
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=6.1e-27 Score=222.14 Aligned_cols=245 Identities=19% Similarity=0.244 Sum_probs=174.2
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLD 91 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 91 (515)
..+.+|.++++++ .+|..+ ++++++|+|++|+|+...+.+|.++++|++|++++|.+. .++...|.++++|++|+
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~ 85 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLY 85 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEec
Confidence 4577888888887 777765 457888888888887555567888888888888888887 66655567778888888
Q ss_pred ccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 92 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
+++|+++.. +.. ....++.|++.+|.+....+..+.....+..++...|.... ..
T Consensus 86 l~~n~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----------------------~~ 140 (305)
T d1xkua_ 86 LSKNQLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SG 140 (305)
T ss_dssp CCSSCCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GG
T ss_pred ccCCccCcC-ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccc----------------------cC
Confidence 888877643 222 23456666666666665555555555555555555543321 11
Q ss_pred cccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSN 249 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~ 249 (515)
..+..+..+++|+.+++++|.+..++ ..+++++|++++|.++...+..+..++.+++|++++|++.+..+.++.++++
T Consensus 141 ~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~ 220 (305)
T d1xkua_ 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220 (305)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred CCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccc
Confidence 12233444555555555555554443 3456777788888888888888888999999999999998888888889999
Q ss_pred cCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCC
Q 043235 250 LHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGP 287 (515)
Q Consensus 250 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 287 (515)
|++|+|++|+++ .+|.++..+++|++|++++|+|+..
T Consensus 221 L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i 257 (305)
T d1xkua_ 221 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257 (305)
T ss_dssp CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred ceeeeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence 999999999998 5577888899999999999988743
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2.9e-26 Score=217.36 Aligned_cols=244 Identities=22% Similarity=0.237 Sum_probs=151.7
Q ss_pred CCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC--CCCcccEEEcccCc
Q 043235 134 LLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS--NLSFVKHIYLQNNA 211 (515)
Q Consensus 134 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~--~l~~L~~L~L~~n~ 211 (515)
.+++|++++|+|+...+.+|.++++|++|++++|.+....|..|..+++|+.|++++|++..++ ....++.|.+.+|.
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~ 111 (305)
T d1xkua_ 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 111 (305)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSC
T ss_pred CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccc
Confidence 3444444444444333334444444444444444444444444444455555555554444433 22345566666666
Q ss_pred eeeeccccccCCCCccEEeccCCccC--CcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEECCCCcCcCCCC
Q 043235 212 IKGLIPIALLRSSTLLTLDLRDNKLF--GRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMDLSRNRLNGPIP 289 (515)
Q Consensus 212 i~~~~~~~~~~~~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~p 289 (515)
+.++.+..+.....+..++...|... ...+..+..+++|+.+++++|.+.. ++..+ +++|++|++++|.+.+..+
T Consensus 112 l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~ 188 (305)
T d1xkua_ 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDA 188 (305)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECT
T ss_pred hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCCh
Confidence 66665666666777777777776543 2334567777788888888887773 33332 4678888888877765444
Q ss_pred ccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcC
Q 043235 290 SCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLS 369 (515)
Q Consensus 290 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 369 (515)
..+.+ ++.+++|+++
T Consensus 189 ~~~~~-----------------------------------------------------------------~~~l~~L~~s 203 (305)
T d1xkua_ 189 ASLKG-----------------------------------------------------------------LNNLAKLGLS 203 (305)
T ss_dssp GGGTT-----------------------------------------------------------------CTTCCEEECC
T ss_pred hHhhc-----------------------------------------------------------------cccccccccc
Confidence 43322 4567778888
Q ss_pred CCcCccccccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCcc------ccCCCCCCEEecccC
Q 043235 370 GNEFSGEIPWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQ------LTELNFLSNFNVSYN 443 (515)
Q Consensus 370 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------l~~l~~L~~L~Ls~N 443 (515)
+|.+.+..+..+.++++|++|+|++|+|+ .+|.+|..+++|++|+|++|+|+...... +..+.+|+.|+|++|
T Consensus 204 ~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N 282 (305)
T d1xkua_ 204 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282 (305)
T ss_dssp SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred cccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCC
Confidence 88888777777788888888888888887 45677888888888888888887543322 345667888888888
Q ss_pred ccc
Q 043235 444 NLS 446 (515)
Q Consensus 444 ~l~ 446 (515)
++.
T Consensus 283 ~~~ 285 (305)
T d1xkua_ 283 PVQ 285 (305)
T ss_dssp SSC
T ss_pred cCc
Confidence 774
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.1e-26 Score=214.74 Aligned_cols=224 Identities=20% Similarity=0.165 Sum_probs=137.7
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
..++.++++++ .+|..+ ++++++|+|++|+|+...+.+|.++++|++|++++|++. .++...+..+..++.++..
T Consensus 14 ~~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~ 88 (284)
T d1ozna_ 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (284)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccc
Confidence 45678888887 788765 457888888888888666677888888888888888887 6666666777777777654
Q ss_pred -CccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 94 -NNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 94 -~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
.+.++...+..|.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..|..+++|++|++++|.+.+.
T Consensus 89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l 168 (284)
T d1ozna_ 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (284)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence 4555555566677777777777777776655555566666666666666666655455555555555555555555544
Q ss_pred ccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCE
Q 043235 173 IPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHV 252 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 252 (515)
.+.+|..+++|+.+++++| +++++.|..|..+++|++|++++|++.+..+..|..+++|++
T Consensus 169 ~~~~f~~l~~L~~l~l~~N-------------------~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~ 229 (284)
T d1ozna_ 169 PERAFRGLHSLDRLLLHQN-------------------RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (284)
T ss_dssp CTTTTTTCTTCCEEECCSS-------------------CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred chhhhccccccchhhhhhc-------------------cccccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence 4444444444333333332 233334444444445555555555554444444444444444
Q ss_pred EEccCccCC
Q 043235 253 LLLRGNYLQ 261 (515)
Q Consensus 253 L~L~~n~i~ 261 (515)
|++++|++.
T Consensus 230 L~l~~N~l~ 238 (284)
T d1ozna_ 230 LRLNDNPWV 238 (284)
T ss_dssp EECCSSCEE
T ss_pred EEecCCCCC
Confidence 444444443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.9e-25 Score=209.36 Aligned_cols=224 Identities=21% Similarity=0.230 Sum_probs=152.4
Q ss_pred EEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc-c
Q 043235 40 YLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD-N 118 (515)
Q Consensus 40 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~ 118 (515)
.++.+++.++ .+|..+. +.+++|+|++|+|+ .+|...|.++++|++|++++|.+....+..+..+..++.+... .
T Consensus 15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~ 90 (284)
T d1ozna_ 15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (284)
T ss_dssp EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence 3455555555 3444332 45666666666666 5665555666666666666666665555555666666665543 4
Q ss_pred CCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcCC
Q 043235 119 NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLSN 198 (515)
Q Consensus 119 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~ 198 (515)
+.++...+..|..+++|++|++++|.+....+..+....+|+.+++++|.+++..+..|..+
T Consensus 91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~------------------ 152 (284)
T d1ozna_ 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL------------------ 152 (284)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC------------------
T ss_pred cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccc------------------
Confidence 44554455556666666666666666654445555555566666666666654444444444
Q ss_pred CCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEEE
Q 043235 199 LSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIMD 278 (515)
Q Consensus 199 l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 278 (515)
++|++|++++|+++.+.+.+|.++++|+.+++++|++++..|..|..+++|++|++++|++.+..+..|..+++|++|+
T Consensus 153 -~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~ 231 (284)
T d1ozna_ 153 -GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (284)
T ss_dssp -TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred -cchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEE
Confidence 4455555566666777788889999999999999999988899999999999999999999988888899999999999
Q ss_pred CCCCcCcC
Q 043235 279 LSRNRLNG 286 (515)
Q Consensus 279 L~~n~i~~ 286 (515)
+++|++.+
T Consensus 232 l~~N~l~C 239 (284)
T d1ozna_ 232 LNDNPWVC 239 (284)
T ss_dssp CCSSCEEC
T ss_pred ecCCCCCC
Confidence 99998864
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.2e-24 Score=199.75 Aligned_cols=104 Identities=24% Similarity=0.225 Sum_probs=57.2
Q ss_pred CCCCCcEEeCCCCCCCCcC-CC-CcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEcc
Q 043235 179 NLKSLEFIDLSENSLISLS-NL-SFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLR 256 (515)
Q Consensus 179 ~l~~L~~L~L~~n~l~~l~-~l-~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 256 (515)
....+.+++.+++.+++++ .+ +.+++|+|++|+|+++.+.+|.++++|++|+|++|+|+.. + .+..+++|++|+|+
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls 85 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLS 85 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECC
T ss_pred ccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccccc
Confidence 3445556667666666654 23 3466666666666655555566666666666666665422 2 23445555555555
Q ss_pred CccCCCCCCccccCCCCCCEEECCCCcCc
Q 043235 257 GNYLQGRIPNQLCQLRKLSIMDLSRNRLN 285 (515)
Q Consensus 257 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 285 (515)
+|+++ ..+..+..+++|++|++++|.+.
T Consensus 86 ~N~l~-~~~~~~~~l~~L~~L~l~~~~~~ 113 (266)
T d1p9ag_ 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113 (266)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCC
T ss_pred ccccc-ccccccccccccccccccccccc
Confidence 55555 23444555555555555555544
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.6e-24 Score=195.37 Aligned_cols=201 Identities=25% Similarity=0.216 Sum_probs=167.6
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
....+.++|.++++++ .+|+.+ .+++++|+|++|.|++..+.+|.++++|++|+|++|+++ .++. +..+++|+
T Consensus 8 ~~~~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~ 80 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLG 80 (266)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCC
T ss_pred ccCCCeEEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--cccccccc
Confidence 4556778899999999 889876 468999999999999777788999999999999999998 7775 46789999
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcc
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (515)
+|++++|+++. .+..+.++++|++|++++|.+....+..+..+.++++|++++|.++...+..+..+++++.+++++|+
T Consensus 81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~ 159 (266)
T d1p9ag_ 81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (266)
T ss_dssp EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence 99999999974 46678889999999999999988888888889999999999999987777788888999999999999
Q ss_pred ccccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 169 LQGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 169 l~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
+++..+..|..+++|++|+|++|+++.+ |..+..+++|+.|+|++|.+.
T Consensus 160 l~~~~~~~~~~l~~L~~L~Ls~N~L~~l--------------------p~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 160 LTELPAGLLNGLENLDTLLLQENSLYTI--------------------PKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCC--------------------CTTTTTTCCCSEEECCSCCBC
T ss_pred ccccCccccccccccceeecccCCCccc--------------------ChhHCCCCCCCEEEecCCCCC
Confidence 9877777788788877777777766543 344555677888888887764
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.88 E-value=2.2e-20 Score=180.12 Aligned_cols=218 Identities=28% Similarity=0.302 Sum_probs=126.2
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEc
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYL 116 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 116 (515)
++++|||+++.++ .+|+. .++|++|++++|+|+ .+|.. +.+|+.|++++|+++.. +. + .+.|++|++
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGV 105 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCC-CS-C--CTTCCEEEC
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccchh-hh-h--ccccccccc
Confidence 5666666666666 34532 355666666666666 56532 34666666666666532 11 1 134666777
Q ss_pred ccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCc
Q 043235 117 DNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISL 196 (515)
Q Consensus 117 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l 196 (515)
++|.+.. +|. +..+++|++|+++++.+... +. ....+..+.+..+.... ...+..++.++.+++++|....+
T Consensus 106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~ 177 (353)
T d1jl5a_ 106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKL 177 (353)
T ss_dssp CSSCCSS-CCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSC
T ss_pred ccccccc-ccc-hhhhccceeecccccccccc-cc---ccccccchhhccccccc--cccccccccceeccccccccccc
Confidence 7666663 332 45566677777766666532 22 23445566665554432 23455667777777777776555
Q ss_pred CC-CCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCC
Q 043235 197 SN-LSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLS 275 (515)
Q Consensus 197 ~~-l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 275 (515)
.. ....+.+...++.+... ..+..++.|+.+++++|.... .+. ...++..+.+..+.+... + .....++
T Consensus 178 ~~~~~~~~~l~~~~~~~~~~--~~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~---~~~~~l~ 247 (353)
T d1jl5a_ 178 PDLPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-P---ELPQSLT 247 (353)
T ss_dssp CCCCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-C---CCCTTCC
T ss_pred cccccccccccccccccccc--ccccccccccccccccccccc-ccc---cccccccccccccccccc-c---ccccccc
Confidence 42 23345555555554432 235667888888888887653 232 345678888888877632 2 2245667
Q ss_pred EEECCCCcCc
Q 043235 276 IMDLSRNRLN 285 (515)
Q Consensus 276 ~L~L~~n~i~ 285 (515)
..++..+.+.
T Consensus 248 ~~~~~~~~~~ 257 (353)
T d1jl5a_ 248 FLDVSENIFS 257 (353)
T ss_dssp EEECCSSCCS
T ss_pred cccccccccc
Confidence 7777666553
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.87 E-value=6.5e-20 Score=176.72 Aligned_cols=196 Identities=30% Similarity=0.322 Sum_probs=96.8
Q ss_pred CccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEE
Q 043235 12 KLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLD 91 (515)
Q Consensus 12 ~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 91 (515)
++++||++++.++ .+|+. +++|++|++++|+|+ .+|.. ..+|+.|++++|.++ .++. -.+.|++|+
T Consensus 39 ~l~~LdLs~~~L~-~lp~~----~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~ 104 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG 104 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred CCCEEEeCCCCCC-CCCCC----CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hcccccccc
Confidence 4556666666665 55531 345666666666665 34443 235566666666655 4442 123466666
Q ss_pred ccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccc
Q 043235 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQG 171 (515)
Q Consensus 92 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (515)
+++|.+... | .++.+++|++|+++++.+... +. ....+..+.+..+... ....+..++.++.+.+++|....
T Consensus 105 L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~ 176 (353)
T d1jl5a_ 105 VSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK 176 (353)
T ss_dssp CCSSCCSSC-C-CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred ccccccccc-c-chhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence 666665532 2 245556666666666655422 21 1234455555544433 12334555556666666655542
Q ss_pred cccccccCCCCCcEEeCCCCCCCCc---CCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccC
Q 043235 172 NIPVQLNNLKSLEFIDLSENSLISL---SNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLF 237 (515)
Q Consensus 172 ~~~~~l~~l~~L~~L~L~~n~l~~l---~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~ 237 (515)
. +. .....+.+...++.+..+ ..++.++.+++++|..... + ....++..+.+.++.+.
T Consensus 177 ~-~~---~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~ 237 (353)
T d1jl5a_ 177 L-PD---LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLT 237 (353)
T ss_dssp C-CC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCS
T ss_pred c-cc---cccccccccccccccccccccccccccccccccccccccc-c---ccccccccccccccccc
Confidence 1 11 112234444444443322 2455566666666554432 1 12334555566655554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.5e-23 Score=206.57 Aligned_cols=378 Identities=18% Similarity=0.150 Sum_probs=242.5
Q ss_pred CCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccc----cCCccccCCCCCCEEECcCCcCcccCchHHHh----
Q 043235 11 DKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEG----NIPYSVGEMKELTILDLSRNNFTGKLPRPIVS---- 82 (515)
Q Consensus 11 ~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~---- 82 (515)
.+|++||+++|++++..-..+...++++++|+|++|.++. .++.++..+++|++|+|++|.|+..--..+..
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 3689999999999854334444557899999999999874 33456788999999999999986211112222
Q ss_pred CCCCCCEEEccCcccccc----CCccccCCCCCCEEEcccCCCCCcCChhhh-----CCCCCcEEEcccCcCCCCc----
Q 043235 83 SCLSLDWLDLSNNNFYGQ----LFPNYMNLTDLGSLYLDNNHFSGKMTDGLL-----SSTLLRVLNVSNNMLSGDI---- 149 (515)
Q Consensus 83 ~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~---- 149 (515)
...+|++|++++|.++.. ++..+..+++|++|++++|.+.......+. ..............+....
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 235799999999998753 234567889999999999988643222221 1223344444444332111
Q ss_pred ChhccCCCCccEEEccCcccccccc----ccc-cCCCCCcEEeCCCCCCCCc---------CCCCcccEEEcccCceeee
Q 043235 150 PHWIGNFSVLSVLLMSENYLQGNIP----VQL-NNLKSLEFIDLSENSLISL---------SNLSFVKHIYLQNNAIKGL 215 (515)
Q Consensus 150 ~~~~~~l~~L~~L~l~~n~l~~~~~----~~l-~~l~~L~~L~L~~n~l~~l---------~~l~~L~~L~L~~n~i~~~ 215 (515)
...+.....++.+.++++....... ..+ ........+++..+.+... ...+.++.+.+.+|.+...
T Consensus 162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~ 241 (460)
T d1z7xw1 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence 1123445678888888877653211 111 1234566788887776432 2456678888888876432
Q ss_pred -----ccccccCCCCccEEeccCCccCCc----CchhhhcCCCcCEEEccCccCCCCCCccc-----cCCCCCCEEECCC
Q 043235 216 -----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINERSNLHVLLLRGNYLQGRIPNQL-----CQLRKLSIMDLSR 281 (515)
Q Consensus 216 -----~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~ 281 (515)
..........++.+++++|.+... ....+...+.++.+++++|.+++.....+ .....|+.+++++
T Consensus 242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~ 321 (460)
T d1z7xw1 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 321 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 233444567888888888887533 22345567788888888888764222211 2345788888888
Q ss_pred CcCcCCCCccccCCcccccccCCCCCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccc
Q 043235 282 NRLNGPIPSCLGNVPFWREATDDDSSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLN 361 (515)
Q Consensus 282 n~i~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (515)
|.++......+..+ ....+
T Consensus 322 ~~l~~~~~~~l~~~-------------------------------------------------------------~~~~~ 340 (460)
T d1z7xw1 322 CSFTAACCSHFSSV-------------------------------------------------------------LAQNR 340 (460)
T ss_dssp SCCBGGGHHHHHHH-------------------------------------------------------------HHHCS
T ss_pred cchhhhhhhhcccc-------------------------------------------------------------ccccc
Confidence 87753211111100 01256
Q ss_pred cCCEEEcCCCcCcccccc----chh-ccccCCeeccCCcccccc----ChhhhcCccCCCeeeCCCCcccccCCc----c
Q 043235 362 YMAGLDLSGNEFSGEIPW----KIG-QLQNIRALNLSNNLLSGA----IPESFSNLKMIESLDLSRNKLSGQIPP----Q 428 (515)
Q Consensus 362 ~L~~L~Ls~n~l~~~~~~----~~~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~ 428 (515)
+|++|+|++|++.+.... .+. ..+.|++|+|++|+|++. +.+.+..+++|++|||++|+|+..... .
T Consensus 341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 420 (460)
T d1z7xw1 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420 (460)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHH
Confidence 789999999998754322 222 356799999999999743 445567779999999999998754322 2
Q ss_pred cc-CCCCCCEEecccCcccccC
Q 043235 429 LT-ELNFLSNFNVSYNNLSGPI 449 (515)
Q Consensus 429 l~-~l~~L~~L~Ls~N~l~~~~ 449 (515)
+. ....|+.|++.+|.+....
T Consensus 421 l~~~~~~L~~l~l~~~~~~~~~ 442 (460)
T d1z7xw1 421 VRQPGCLLEQLVLYDIYWSEEM 442 (460)
T ss_dssp HTSTTCCCCEEECTTCCCCHHH
T ss_pred HHhCCCccCEEECCCCCCCHHH
Confidence 22 3347999999999887543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.81 E-value=1.2e-19 Score=163.33 Aligned_cols=208 Identities=18% Similarity=0.241 Sum_probs=124.3
Q ss_pred CCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCE
Q 043235 10 YDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDW 89 (515)
Q Consensus 10 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~ 89 (515)
++++..++++.+++++.++ ... +.+|++|++.+|.|+. + ..+.++++|++|++++|.++ .++. +..+++|++
T Consensus 18 l~~~~~~~l~~~~~~d~~~--~~~-l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~ 89 (227)
T d1h6ua2 18 LANAIKIAAGKSNVTDTVT--QAD-LDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITE 89 (227)
T ss_dssp HHHHHHHHTTCSSTTSEEC--HHH-HHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCE
T ss_pred HHHHHHHHhCCCCcCCcCC--HHH-cCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceee-cccc--ccccccccc
Confidence 3344455666666664332 222 4577777777777763 3 34677777777777777776 4443 466777777
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccc
Q 043235 90 LDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYL 169 (515)
Q Consensus 90 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (515)
+++++|.++. ...+.++++|+.++++++...+. ..+...+.++.+.++++.+... ..+..+++|++|++++|.+
T Consensus 90 l~~~~n~~~~--i~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~ 163 (227)
T d1h6ua2 90 LELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQV 163 (227)
T ss_dssp EECCSCCCSC--CGGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCC
T ss_pred cccccccccc--ccccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhcccccccccccccccc
Confidence 7777776653 23466667777777776665432 3345556666666666665532 2245556666666666665
Q ss_pred cccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCC
Q 043235 170 QGNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSN 249 (515)
Q Consensus 170 ~~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~ 249 (515)
.+. ..+..+++|++|++++ |+++++. .+..+++|++|++++|++++.. .+..+++
T Consensus 164 ~~~--~~l~~l~~L~~L~Ls~-------------------n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~ 218 (227)
T d1h6ua2 164 SDL--TPLANLSKLTTLKADD-------------------NKISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSN 218 (227)
T ss_dssp CCC--GGGTTCTTCCEEECCS-------------------SCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTT
T ss_pred ccc--hhhcccccceecccCC-------------------CccCCCh--hhcCCCCCCEEECcCCcCCCCc--ccccCCC
Confidence 532 1244555555555555 4444432 2566677777777777776443 3677777
Q ss_pred cCEEEcc
Q 043235 250 LHVLLLR 256 (515)
Q Consensus 250 L~~L~L~ 256 (515)
|+.|+++
T Consensus 219 L~~L~ls 225 (227)
T d1h6ua2 219 LFIVTLT 225 (227)
T ss_dssp CCEEEEE
T ss_pred CCEEEee
Confidence 7777776
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=7e-20 Score=166.78 Aligned_cols=221 Identities=14% Similarity=0.105 Sum_probs=149.7
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
++++.++.+++ .+|+.+ ++++++|++++|+|+...+.+|.++++|++|++++|.+...++...|.+++.++++.+.
T Consensus 11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 67888888888 888766 35788999999988866666788889999999998887755666667788888888876
Q ss_pred C-ccccccCCccccCCCCCCEEEcccCCCCCcCCh-hhhCCCCCcEEEcccCcCCCCcChhccCCC-CccEEEccCcccc
Q 043235 94 N-NNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTD-GLLSSTLLRVLNVSNNMLSGDIPHWIGNFS-VLSVLLMSENYLQ 170 (515)
Q Consensus 94 ~-n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~ 170 (515)
. |.+....+..|.++++|+++++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.|++++|+++
T Consensus 87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~ 166 (242)
T d1xwdc1 87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 166 (242)
T ss_dssp CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 4 567666677788888888888888887643222 223344555555566666544445555543 5666666666666
Q ss_pred ccccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCc
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNL 250 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 250 (515)
...+..+ ...+++.+ +.+++|.++.+.+..|.++++|++|++++|+++...+..|.++++|
T Consensus 167 ~i~~~~~-~~~~l~~~------------------~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 227 (242)
T d1xwdc1 167 EIHNCAF-NGTQLDEL------------------NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 227 (242)
T ss_dssp EECTTTT-TTCCEEEE------------------ECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred ccccccc-cchhhhcc------------------ccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccc
Confidence 4333222 22222222 2345556666656677888888888888888886656667766666
Q ss_pred CEEEccC
Q 043235 251 HVLLLRG 257 (515)
Q Consensus 251 ~~L~L~~ 257 (515)
+.+++.+
T Consensus 228 ~~l~~~~ 234 (242)
T d1xwdc1 228 RARSTYN 234 (242)
T ss_dssp ESSSEES
T ss_pred ccCcCCC
Confidence 6665543
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8e-22 Score=197.32 Aligned_cols=372 Identities=16% Similarity=0.125 Sum_probs=242.0
Q ss_pred cCCcEEECcCCcccccC-CccccCCCCCCEEECcCCcCccc----CchHHHhCCCCCCEEEccCccccccCC----cccc
Q 043235 36 QKLIYLDMSKNNFEGNI-PYSVGEMKELTILDLSRNNFTGK----LPRPIVSSCLSLDWLDLSNNNFYGQLF----PNYM 106 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~----l~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~ 106 (515)
.+|++||+++|++++.. ...+..++++++|+|++|.++.. +. .++..+++|++|||++|.|+.... ..+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~-~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHH-HHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence 36899999999998532 33466789999999999988721 22 234778999999999999864222 2222
Q ss_pred -CCCCCCEEEcccCCCCCc----CChhhhCCCCCcEEEcccCcCCCCcChhc----c-CCCCccEEEccCcccccc----
Q 043235 107 -NLTDLGSLYLDNNHFSGK----MTDGLLSSTLLRVLNVSNNMLSGDIPHWI----G-NFSVLSVLLMSENYLQGN---- 172 (515)
Q Consensus 107 -~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~-~l~~L~~L~l~~n~l~~~---- 172 (515)
...+|++|++++|+++.. ++..+..+++|++|++++|.++......+ . ..................
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 160 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence 235799999999998754 24456778899999999998864322222 1 122334444444433311
Q ss_pred ccccccCCCCCcEEeCCCCCCCCc---------C-CCCcccEEEcccCceeee----ccccccCCCCccEEeccCCccCC
Q 043235 173 IPVQLNNLKSLEFIDLSENSLISL---------S-NLSFVKHIYLQNNAIKGL----IPIALLRSSTLLTLDLRDNKLFG 238 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~~l---------~-~l~~L~~L~L~~n~i~~~----~~~~~~~~~~L~~L~Ls~n~i~~ 238 (515)
....+.....++.++++++..... . .......+.+..+.+... ....+.....++.+++++|++..
T Consensus 161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~ 240 (460)
T d1z7xw1 161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240 (460)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence 112244567888889888876321 1 234566777777765432 11234456788899999887642
Q ss_pred c-----CchhhhcCCCcCEEEccCccCCCCC----CccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCCCCcc
Q 043235 239 R-----IPHQINERSNLHVLLLRGNYLQGRI----PNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDDSSEF 309 (515)
Q Consensus 239 ~-----~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~~~~~ 309 (515)
. ..........++.+++++|.+.... ...+...+.++.+++++|.+.+.....+..
T Consensus 241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~--------------- 305 (460)
T d1z7xw1 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE--------------- 305 (460)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH---------------
T ss_pred cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhc---------------
Confidence 2 2233344678999999998876432 233456788999999998875321111100
Q ss_pred cccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccc----hhccc
Q 043235 310 FYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWK----IGQLQ 385 (515)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~ 385 (515)
........|+.+++++|.++...... +...+
T Consensus 306 ---------------------------------------------~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~ 340 (460)
T d1z7xw1 306 ---------------------------------------------TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 340 (460)
T ss_dssp ---------------------------------------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred ---------------------------------------------cccccccccccccccccchhhhhhhhccccccccc
Confidence 00011457899999999988654333 34567
Q ss_pred cCCeeccCCcccccc----Chhhhc-CccCCCeeeCCCCccccc----CCccccCCCCCCEEecccCcccccCCC-----
Q 043235 386 NIRALNLSNNLLSGA----IPESFS-NLKMIESLDLSRNKLSGQ----IPPQLTELNFLSNFNVSYNNLSGPIPD----- 451 (515)
Q Consensus 386 ~L~~L~Ls~N~l~~~----~~~~~~-~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~----- 451 (515)
+|++|+|++|++++. +++.+. ..+.|++|+|++|+|+.. +...+..+++|++|+|++|+++.....
T Consensus 341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 420 (460)
T d1z7xw1 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420 (460)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHH
Confidence 899999999999754 233343 467899999999999843 455677789999999999999753221
Q ss_pred -CcccCCCCcccccCCCC
Q 043235 452 -KEQFATFDDCSYKGNSA 468 (515)
Q Consensus 452 -~~~~~~l~~~~~~gn~~ 468 (515)
......++.+.+.+|.+
T Consensus 421 l~~~~~~L~~l~l~~~~~ 438 (460)
T d1z7xw1 421 VRQPGCLLEQLVLYDIYW 438 (460)
T ss_dssp HTSTTCCCCEEECTTCCC
T ss_pred HHhCCCccCEEECCCCCC
Confidence 01223467777776654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.80 E-value=6.9e-19 Score=158.29 Aligned_cols=206 Identities=21% Similarity=0.251 Sum_probs=135.3
Q ss_pred CcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcc
Q 043235 38 LIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 38 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 117 (515)
+..++++.+++++. ..+..+.+|++|++.+|.++ .++. +..+++|++|++++|.+++. ..+..+++|++++++
T Consensus 21 ~~~~~l~~~~~~d~--~~~~~l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~--~~l~~l~~l~~l~~~ 93 (227)
T d1h6ua2 21 AIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDL--APLKNLTKITELELS 93 (227)
T ss_dssp HHHHHTTCSSTTSE--ECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCC--GGGTTCCSCCEEECC
T ss_pred HHHHHhCCCCcCCc--CCHHHcCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeecc--ccccccccccccccc
Confidence 34456666666643 24456677777777777776 5642 46677777777777777643 236667777777777
Q ss_pred cCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCCcC
Q 043235 118 NNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLISLS 197 (515)
Q Consensus 118 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~l~ 197 (515)
+|.++.. ..+..+++|++++++++...+. ..+...+.++.+.++.+.+... ..+..++
T Consensus 94 ~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~---------------- 151 (227)
T d1h6ua2 94 GNPLKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLT---------------- 151 (227)
T ss_dssp SCCCSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCT----------------
T ss_pred ccccccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhcccc----------------
Confidence 7766532 3456666677776666665432 2244455556666555555422 1233344
Q ss_pred CCCcccEEEcccCceeeeccccccCCCCccEEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCCCEE
Q 043235 198 NLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKLSIM 277 (515)
Q Consensus 198 ~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 277 (515)
.|++|++++|.+.+. ..+.++++|++|++++|++++. ..+..+++|++|+|++|++++.. .+..+++|++|
T Consensus 152 ---~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L 222 (227)
T d1h6ua2 152 ---NLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIV 222 (227)
T ss_dssp ---TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEE
T ss_pred ---ccccccccccccccc--hhhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEE
Confidence 445555555555543 2477889999999999999754 34889999999999999998543 38899999999
Q ss_pred ECCC
Q 043235 278 DLSR 281 (515)
Q Consensus 278 ~L~~ 281 (515)
++++
T Consensus 223 ~lsn 226 (227)
T d1h6ua2 223 TLTN 226 (227)
T ss_dssp EEEE
T ss_pred EeeC
Confidence 9864
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.78 E-value=1.7e-19 Score=157.70 Aligned_cols=172 Identities=17% Similarity=0.251 Sum_probs=141.2
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccc-cCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEE
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEG-NIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLD 91 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~ 91 (515)
.+++++++++++ .+|..+ ++++++|+|++|.|+. ..+..|.++++|++|+|++|.+. .++...|..+++|++|+
T Consensus 10 ~~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~ 84 (192)
T d1w8aa_ 10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEE
T ss_pred CCEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceee
Confidence 468999999999 899876 4789999999999975 45677899999999999999999 77777788999999999
Q ss_pred ccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcCh-hccCCCCccEEEccCcccc
Q 043235 92 LSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPH-WIGNFSVLSVLLMSENYLQ 170 (515)
Q Consensus 92 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~ 170 (515)
+++|+|+...+.+|.++++|++|+|++|+|+++.+++|..+++|++|++++|.+...... ++. ..++.+.+..+.+.
T Consensus 85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~ 162 (192)
T d1w8aa_ 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAAR 162 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCB
T ss_pred eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeE
Confidence 999999988888999999999999999999988899999999999999999998754322 221 23555666667666
Q ss_pred ccccccccCCCCCcEEeCCCCCCC
Q 043235 171 GNIPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 171 ~~~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
...|. .+..++.++++.|.+.
T Consensus 163 c~~p~---~l~~~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 163 CGAPS---KVRDVQIKDLPHSEFK 183 (192)
T ss_dssp BCSST---TTTTSBGGGSCTTTCC
T ss_pred eCCCh---hhcCCEeeecCHhhCc
Confidence 55554 3455666777777664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.9e-19 Score=160.08 Aligned_cols=219 Identities=14% Similarity=0.074 Sum_probs=119.9
Q ss_pred cEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCcccccc-CCccccCCCCCCEEEcc
Q 043235 39 IYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQ-LFPNYMNLTDLGSLYLD 117 (515)
Q Consensus 39 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~ 117 (515)
++++.++..++ .+|..+- +++++|++++|+++ .+|...|.++++|++|++++|.+... .+..|.++++++++.+.
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 45666666665 4444332 35666666666666 56665556666666666666665432 23345666666666554
Q ss_pred c-CCCCCcCChhhhCCCCCcEEEcccCcCCCCcCh-hccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCC
Q 043235 118 N-NHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPH-WIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS 195 (515)
Q Consensus 118 ~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 195 (515)
. |.+....+..|..+++|+++++++|.+....+. .+..+..+..+...++.+....+..+..+
T Consensus 87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~--------------- 151 (242)
T d1xwdc1 87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL--------------- 151 (242)
T ss_dssp CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTS---------------
T ss_pred ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccc---------------
Confidence 3 445545555556666666666666655432111 12223333333333333332222222221
Q ss_pred cCCCCcccEEEcccCceeeeccccccCCCCcc-EEeccCCccCCcCchhhhcCCCcCEEEccCccCCCCCCccccCCCCC
Q 043235 196 LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLL-TLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQGRIPNQLCQLRKL 274 (515)
Q Consensus 196 l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~-~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 274 (515)
...++.+++++|+++.+.+..+.. .+++ .+++++|+++...+..|.++++|++|++++|+++...+..|..+++|
T Consensus 152 ---~~~l~~L~l~~n~l~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 227 (242)
T d1xwdc1 152 ---SFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 227 (242)
T ss_dssp ---BSSCEEEECCSSCCCEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred ---cccceeeecccccccccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccc
Confidence 123555666666666655544443 3444 34567777775555567778888888888888875555556666555
Q ss_pred CEEECC
Q 043235 275 SIMDLS 280 (515)
Q Consensus 275 ~~L~L~ 280 (515)
+.+++.
T Consensus 228 ~~l~~~ 233 (242)
T d1xwdc1 228 RARSTY 233 (242)
T ss_dssp ESSSEE
T ss_pred ccCcCC
Confidence 555543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.77 E-value=5.4e-19 Score=154.39 Aligned_cols=178 Identities=22% Similarity=0.260 Sum_probs=113.9
Q ss_pred cEEeccCCccCCcCchhhhcCCCcCEEEccCccCCC-CCCccccCCCCCCEEECCCCcCcCCCCccccCCcccccccCCC
Q 043235 227 LTLDLRDNKLFGRIPHQINERSNLHVLLLRGNYLQG-RIPNQLCQLRKLSIMDLSRNRLNGPIPSCLGNVPFWREATDDD 305 (515)
Q Consensus 227 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~l~~~~~~~ 305 (515)
++++.++++++ .+|..+. +++++|+|++|+|++ ..+..|..+++|++|++++|.+....+..+..
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~----------- 76 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc-----------
Confidence 45666666666 3454432 467777777777764 33455667777777777777776544444332
Q ss_pred CCcccccCCCCCCccccCCcccccCccccccccccccceeeeccCccccccccccccCCEEEcCCCcCccccccchhccc
Q 043235 306 SSEFFYANNVDSPVAYYNSSLELQLPVELHFRQDQQVGAKFVTKNRYEFFIGSNLNYMAGLDLSGNEFSGEIPWKIGQLQ 385 (515)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 385 (515)
+++|++|+|++|+++...+..|.+++
T Consensus 77 ------------------------------------------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~ 102 (192)
T d1w8aa_ 77 ------------------------------------------------------ASHIQELQLGENKIKEISNKMFLGLH 102 (192)
T ss_dssp ------------------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred ------------------------------------------------------ccccceeeeccccccccCHHHHhCCC
Confidence 45667777777777766667777788
Q ss_pred cCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEecccCcccccCCCCcccCCCCcccccC
Q 043235 386 NIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFNVSYNNLSGPIPDKEQFATFDDCSYKG 465 (515)
Q Consensus 386 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~~~g 465 (515)
+|++|+|++|+|+++.+++|..+++|++|+|++|.+..... ...-...++.+.+..|.++...|. .+..+...++..
T Consensus 103 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~c~~p~--~l~~~~l~~L~~ 179 (192)
T d1w8aa_ 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPS--KVRDVQIKDLPH 179 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCBBCSST--TTTTSBGGGSCT
T ss_pred cccccccCCccccccCHHHhcCCcccccccccccccccccc-hHHHhhhhhhhcccCCCeEeCCCh--hhcCCEeeecCH
Confidence 88888888888877777778888888888888887764322 111123455666777777766664 234445556677
Q ss_pred CCCCCCCccC
Q 043235 466 NSALCGSMIK 475 (515)
Q Consensus 466 n~~~c~~~l~ 475 (515)
|...|.++-.
T Consensus 180 n~l~C~~~~~ 189 (192)
T d1w8aa_ 180 SEFKCSSENS 189 (192)
T ss_dssp TTCCCCCC--
T ss_pred hhCcCCCCCC
Confidence 7777755543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.77 E-value=1.4e-18 Score=154.06 Aligned_cols=164 Identities=23% Similarity=0.329 Sum_probs=80.8
Q ss_pred cCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEE
Q 043235 36 QKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLY 115 (515)
Q Consensus 36 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 115 (515)
.+|++|++++|.++.. + .+..+++|++|++++|+++ .++. +..+++|++|++++|+++.. +.+.++++|+.|+
T Consensus 46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~ 118 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118 (210)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCcccc-Cccc--cccCcccccccccccccccc--ccccccccccccc
Confidence 4555555555555522 1 2455555555555555555 3432 24455555555555555431 2345555555555
Q ss_pred cccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCC
Q 043235 116 LDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS 195 (515)
Q Consensus 116 L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 195 (515)
+++|.+.. ...+..++.++.+++++|.++. +..+..+++|+++++++|++.+. + .+..++
T Consensus 119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~-------------- 178 (210)
T d1h6ta2 119 LEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLT-------------- 178 (210)
T ss_dssp CTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCT--------------
T ss_pred cccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCC--------------
Confidence 55555432 2234445555555555555542 12344445555555555554422 1 134444
Q ss_pred cCCCCcccEEEcccCceeeeccccccCCCCccEEeccC
Q 043235 196 LSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRD 233 (515)
Q Consensus 196 l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~ 233 (515)
+|++|++++|+++++ + .+.++++|++|+|++
T Consensus 179 -----~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 179 -----KLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS 209 (210)
T ss_dssp -----TCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred -----CCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence 445555555555543 2 466667777777653
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.76 E-value=5.4e-18 Score=150.13 Aligned_cols=166 Identities=21% Similarity=0.314 Sum_probs=141.7
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLD 88 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~ 88 (515)
.+.+|++|++++|.++ .++. +.. +++|++|++++|++++. + .++.+++|++|++++|+++ .++. +..+++|+
T Consensus 44 ~L~~L~~L~l~~~~i~-~l~~-l~~-l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~ 115 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLSS--LKDLKKLK 115 (210)
T ss_dssp HHHTCCEEECTTSCCC-CCTT-GGG-CTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGGG--GTTCTTCC
T ss_pred HhcCccEEECcCCCCC-Cchh-Hhh-CCCCCEEeCCCccccCc-c-ccccCcccccccccccccc-cccc--cccccccc
Confidence 4678999999999998 5553 444 89999999999999954 3 4789999999999999998 7774 57899999
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcc
Q 043235 89 WLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENY 168 (515)
Q Consensus 89 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (515)
.|++++|.+.. ...+..+++++.+++++|.+++ +..+..+++|+++++++|++++. + .+.++++|++|++++|+
T Consensus 116 ~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~ 189 (210)
T d1h6ta2 116 SLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNH 189 (210)
T ss_dssp EEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred ccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCC
Confidence 99999999864 4578899999999999999974 34577899999999999999854 3 38899999999999999
Q ss_pred ccccccccccCCCCCcEEeCCC
Q 043235 169 LQGNIPVQLNNLKSLEFIDLSE 190 (515)
Q Consensus 169 l~~~~~~~l~~l~~L~~L~L~~ 190 (515)
++. ++ .+..+++|++|+|++
T Consensus 190 i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 190 ISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEE
T ss_pred CCC-Ch-hhcCCCCCCEEEccC
Confidence 985 44 589999999999864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=3.6e-18 Score=149.98 Aligned_cols=166 Identities=25% Similarity=0.292 Sum_probs=92.4
Q ss_pred ccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEc
Q 043235 13 LRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDL 92 (515)
Q Consensus 13 L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L 92 (515)
.....++.+.+++.++.. . ++++++|++++|.++. + +.+..+++|++|++++|+++ .++. +.++++|++|++
T Consensus 20 ~i~~~l~~~~~~~~~~~~--~-l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l 91 (199)
T d2omxa2 20 KMKTVLGKTNVTDTVSQT--D-LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILM 91 (199)
T ss_dssp HHHHHTTCSSTTSEECHH--H-HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEEC
T ss_pred HHHHHhCCCCCCCccCHH--H-hcCCCEEECCCCCCCC-c-cccccCCCcCcCcccccccc-Cccc--ccCCcccccccc
Confidence 334455555555333221 2 4566666666666663 2 23566666666666666666 4443 456666666666
Q ss_pred cCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCcccccc
Q 043235 93 SNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGN 172 (515)
Q Consensus 93 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (515)
++|.+... ..+.++++|+.|++++|.+... ..+..+++|+.|++++|++.. + ..+..+++++.|++.+|++++.
T Consensus 92 ~~n~~~~~--~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l 165 (199)
T d2omxa2 92 NNNQIADI--TPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL 165 (199)
T ss_dssp CSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC
T ss_pred cccccccc--cccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC
Confidence 66665432 2356666666666666665432 335556666666666666652 2 2355566666666666666532
Q ss_pred ccccccCCCCCcEEeCCCCCCC
Q 043235 173 IPVQLNNLKSLEFIDLSENSLI 194 (515)
Q Consensus 173 ~~~~l~~l~~L~~L~L~~n~l~ 194 (515)
. .+.++++|++|++++|+++
T Consensus 166 ~--~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 166 K--PLANLTTLERLDISSNKVS 185 (199)
T ss_dssp G--GGTTCTTCCEEECCSSCCC
T ss_pred c--cccCCCCCCEEECCCCCCC
Confidence 1 2455555555555555443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=1.9e-17 Score=145.33 Aligned_cols=163 Identities=23% Similarity=0.302 Sum_probs=138.7
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
..++++++|++++|.++ .++ .+.. +++|++|++++|++++.. .++++++|++|++++|.+. .++. +.++++|
T Consensus 37 ~~l~~l~~L~l~~~~i~-~l~-~l~~-l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L 108 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIK-SID-GVEY-LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DITP--LANLTNL 108 (199)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred HHhcCCCEEECCCCCCC-Ccc-cccc-CCCcCcCccccccccCcc--cccCCcccccccccccccc-cccc--ccccccc
Confidence 35789999999999998 665 3444 899999999999999543 3899999999999999998 7765 6889999
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCc
Q 043235 88 DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSEN 167 (515)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (515)
++|++++|.+.. ...+..+++|+.|++++|++.. ...+..+++|++|++.+|++++. + .++++++|++|++++|
T Consensus 109 ~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N 182 (199)
T d2omxa2 109 TGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSN 182 (199)
T ss_dssp SEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSS
T ss_pred cccccccccccc--ccccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCC-c-cccCCCCCCEEECCCC
Confidence 999999998864 3568899999999999999974 34688999999999999999864 3 4889999999999999
Q ss_pred cccccccccccCCCCCcEE
Q 043235 168 YLQGNIPVQLNNLKSLEFI 186 (515)
Q Consensus 168 ~l~~~~~~~l~~l~~L~~L 186 (515)
++++ ++ .++.+++|+.|
T Consensus 183 ~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 183 KVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp CCCC-CG-GGGGCTTCSEE
T ss_pred CCCC-Cc-cccCCCCCCcC
Confidence 9985 33 57888888875
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.4e-17 Score=153.17 Aligned_cols=256 Identities=18% Similarity=0.165 Sum_probs=163.6
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
+.+|++++.+.......+.. ..+..+.++...+.. .........+|++||+++|.++......++..+++|++|+++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~-~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~ 79 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECS-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred CEEECCCCCCCchHHHHHHh--ccceEeecccccccc-chhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence 47999999886444444443 357788888777663 333344567899999999988755556677899999999999
Q ss_pred CccccccCCccccCCCCCCEEEcccC-CCCCcC-ChhhhCCCCCcEEEcccCc-CCCC-cChhcc-CCCCccEEEccCcc
Q 043235 94 NNNFYGQLFPNYMNLTDLGSLYLDNN-HFSGKM-TDGLLSSTLLRVLNVSNNM-LSGD-IPHWIG-NFSVLSVLLMSENY 168 (515)
Q Consensus 94 ~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~-~l~~L~~L~l~~n~ 168 (515)
+|.+++..+..+..+++|++|+++++ .++... ......+++|++|++++|. ++.. ....+. ..++|+.|+++++.
T Consensus 80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (284)
T d2astb2 80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159 (284)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence 99988777778888999999999985 454221 1223467889999998863 3311 111222 23567777777642
Q ss_pred --cccc-ccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeeeccccccCCCCccEEeccCC-ccCCcCchhh
Q 043235 169 --LQGN-IPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGLIPIALLRSSTLLTLDLRDN-KLFGRIPHQI 244 (515)
Q Consensus 169 --l~~~-~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~ 244 (515)
++.. +......+++|++|++++|. .+++.....+..+++|++|++++| .+++.....+
T Consensus 160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~------------------~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L 221 (284)
T d2astb2 160 KNLQKSDLSTLVRRCPNLVHLDLSDSV------------------MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 221 (284)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCT------------------TCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred ccccccccccccccccccccccccccc------------------CCCchhhhhhcccCcCCEEECCCCCCCChHHHHHH
Confidence 2221 11222345555555555442 244444456667788888888884 5666666667
Q ss_pred hcCCCcCEEEccCccCCCCC-CccccCCCCCCEEECCCCcCcCCCCccccC
Q 043235 245 NERSNLHVLLLRGNYLQGRI-PNQLCQLRKLSIMDLSRNRLNGPIPSCLGN 294 (515)
Q Consensus 245 ~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~ 294 (515)
..+++|+.|+++++ +++.. ......+++|+ +..+++++..+..++.
T Consensus 222 ~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~ 268 (284)
T d2astb2 222 GEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN 268 (284)
T ss_dssp GGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred hcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence 77888888888877 33222 22223455554 4666666555554443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.5e-16 Score=146.10 Aligned_cols=183 Identities=18% Similarity=0.167 Sum_probs=94.6
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCC-cCcccCchHHHhCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRN-NFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~l~~~~~~~l~~L 87 (515)
...+|++||++++.+++.....++..+++|++|++++|.+++..+..+.++++|++|++++| .+++..-..++..+++|
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence 34466666666666653333344444666666666666666555556666666666666664 34321112233456666
Q ss_pred CEEEccCcc-ccccC-Ccccc-CCCCCCEEEcccCC--CCCc-CChhhhCCCCCcEEEcccCc-CCCCcChhccCCCCcc
Q 043235 88 DWLDLSNNN-FYGQL-FPNYM-NLTDLGSLYLDNNH--FSGK-MTDGLLSSTLLRVLNVSNNM-LSGDIPHWIGNFSVLS 160 (515)
Q Consensus 88 ~~L~L~~n~-i~~~~-~~~~~-~l~~L~~L~L~~n~--i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 160 (515)
++|++++|. ++... ...+. ..++|+.|+++++. ++.. +......+++|++|++++|. +++.....+..+++|+
T Consensus 124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~ 203 (284)
T d2astb2 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203 (284)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence 666666652 32111 11122 23556666666532 2211 11122345666666666543 4444445555666666
Q ss_pred EEEccCc-cccccccccccCCCCCcEEeCCCC
Q 043235 161 VLLMSEN-YLQGNIPVQLNNLKSLEFIDLSEN 191 (515)
Q Consensus 161 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n 191 (515)
+|++++| .+++.....++.+++|+.|+++++
T Consensus 204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 6666663 344444444555555555555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.5e-16 Score=130.42 Aligned_cols=127 Identities=18% Similarity=0.211 Sum_probs=76.1
Q ss_pred CCCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 8 AKYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 8 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
.++.++++|||++|+|+ .++.. +..+++|++|+|++|.|+. + +.|..+++|++|++++|+++ .++..++..+++|
T Consensus 15 ~n~~~lr~L~L~~n~I~-~i~~~-~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L 89 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIP-VIENL-GATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 89 (162)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCG-GGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred cCcCcCcEEECCCCCCC-ccCcc-ccccccCCEEECCCCCCCc-c-CCcccCcchhhhhccccccc-CCCcccccccccc
Confidence 44556777777777776 55543 2335677777777777763 2 24666777777777777776 5666555667777
Q ss_pred CEEEccCccccccC-CccccCCCCCCEEEcccCCCCCcC---ChhhhCCCCCcEEE
Q 043235 88 DWLDLSNNNFYGQL-FPNYMNLTDLGSLYLDNNHFSGKM---TDGLLSSTLLRVLN 139 (515)
Q Consensus 88 ~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~ 139 (515)
++|++++|+++... ...+..+++|++|++++|.++... +..+..+++|++||
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 77777777665322 134556666666666666654221 11344555555554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=3.6e-15 Score=119.12 Aligned_cols=102 Identities=23% Similarity=0.306 Sum_probs=59.6
Q ss_pred cEEeCcCCcCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEcc
Q 043235 14 RHLDISSNNFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLS 93 (515)
Q Consensus 14 ~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~ 93 (515)
|+|++++|+++ .++. +.. +++|++|++++|+|+ .+|..+..+++|++|++++|.++ .+|. +..+++|++|+++
T Consensus 1 R~L~Ls~n~l~-~l~~-l~~-l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~l~ 73 (124)
T d1dcea3 1 RVLHLAHKDLT-VLCH-LEQ-LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLC 73 (124)
T ss_dssp SEEECTTSCCS-SCCC-GGG-GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECC
T ss_pred CEEEcCCCCCC-CCcc-ccc-CCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeEECC
Confidence 45666666666 5543 333 566666666666666 34555666666666666666666 5543 3556666666666
Q ss_pred CccccccC-CccccCCCCCCEEEcccCCCC
Q 043235 94 NNNFYGQL-FPNYMNLTDLGSLYLDNNHFS 122 (515)
Q Consensus 94 ~n~i~~~~-~~~~~~l~~L~~L~L~~n~i~ 122 (515)
+|+|+... ...+..+++|++|++++|+++
T Consensus 74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 66665332 134555556666666665554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.3e-15 Score=128.02 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=59.2
Q ss_pred cCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCChhhhCCCCCc
Q 043235 57 GEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMTDGLLSSTLLR 136 (515)
Q Consensus 57 ~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 136 (515)
.+..++++|+|++|+|+ .++. ++..+++|++|++++|.|+.. +.+..+++|++|++++|+++...+..+..+++|+
T Consensus 15 ~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~ 90 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 90 (162)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence 34444555555555554 4432 224445555555555555432 2344455555555555555443333344455555
Q ss_pred EEEcccCcCCCCcC-hhccCCCCccEEEccCccccccc---cccccCCCCCcEEe
Q 043235 137 VLNVSNNMLSGDIP-HWIGNFSVLSVLLMSENYLQGNI---PVQLNNLKSLEFID 187 (515)
Q Consensus 137 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~ 187 (515)
+|++++|+++.... ..+..+++|++|++++|.++... +..+..+++|+.||
T Consensus 91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 55555555542211 23445555555555555554221 11244455555554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.58 E-value=8.5e-16 Score=147.03 Aligned_cols=241 Identities=21% Similarity=0.219 Sum_probs=134.7
Q ss_pred CCchhHHhcccCCcEEECcCCccccc----CCccccCCCCCCEEECcCCcCc---ccCch------HHHhCCCCCCEEEc
Q 043235 26 KLPENLGIIFQKLIYLDMSKNNFEGN----IPYSVGEMKELTILDLSRNNFT---GKLPR------PIVSSCLSLDWLDL 92 (515)
Q Consensus 26 ~~p~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~---~~l~~------~~~~~l~~L~~L~L 92 (515)
.+...+.. ...|++|+|++|.+... +...+...++|+.|+++++... ...+. ..+..+++|++|++
T Consensus 22 ~l~~~L~~-~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L 100 (344)
T d2ca6a1 22 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 100 (344)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhh-CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence 34444544 57788888888887542 2345667788888888877543 11111 12345677888888
Q ss_pred cCccccccCC----ccccCCCCCCEEEcccCCCCCcCChhh-------------hCCCCCcEEEcccCcCCCCc----Ch
Q 043235 93 SNNNFYGQLF----PNYMNLTDLGSLYLDNNHFSGKMTDGL-------------LSSTLLRVLNVSNNMLSGDI----PH 151 (515)
Q Consensus 93 ~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~-------------~~l~~L~~L~l~~n~l~~~~----~~ 151 (515)
++|.+..... ..+...++|++|++++|.+.......+ ...+.|+.+++++|.++... ..
T Consensus 101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~ 180 (344)
T d2ca6a1 101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180 (344)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred cccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc
Confidence 8777654322 233456677777777776542111111 23445566666665554221 11
Q ss_pred hccCCCCccEEEccCcccccc-----ccccccCCCCCcEEeCCCCCCCCcCCCCcccEEEcccCceeee----ccccccC
Q 043235 152 WIGNFSVLSVLLMSENYLQGN-----IPVQLNNLKSLEFIDLSENSLISLSNLSFVKHIYLQNNAIKGL----IPIALLR 222 (515)
Q Consensus 152 ~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~l~~l~~L~~L~L~~n~i~~~----~~~~~~~ 222 (515)
.+...+.+++|++++|.+... +...+..+ +.|+.|++++|.++.. +...+..
T Consensus 181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~-------------------~~L~~L~Ls~N~i~~~g~~~L~~~l~~ 241 (344)
T d2ca6a1 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-------------------QELKVLDLQDNTFTHLGSSALAIALKS 241 (344)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-------------------TTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred hhhhhhhhcccccccccccccccccchhhhhcch-------------------hhhcccccccccccccccccccccccc
Confidence 233345555555555554421 11223333 4455555555554332 2334566
Q ss_pred CCCccEEeccCCccCCcCchh----hhc--CCCcCEEEccCccCCCCC----Ccccc-CCCCCCEEECCCCcCcC
Q 043235 223 SSTLLTLDLRDNKLFGRIPHQ----INE--RSNLHVLLLRGNYLQGRI----PNQLC-QLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 223 ~~~L~~L~Ls~n~i~~~~~~~----~~~--l~~L~~L~L~~n~i~~~~----~~~~~-~l~~L~~L~L~~n~i~~ 286 (515)
+++|++|++++|.|.+..... +.. .+.|++|++++|+|+... ...+. ++++|++|++++|++..
T Consensus 242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 777888888888776442222 222 356888888888876422 22232 46788888888888853
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.57 E-value=6.8e-16 Score=147.70 Aligned_cols=223 Identities=21% Similarity=0.182 Sum_probs=122.6
Q ss_pred CccccCCCCCCEEECcCCcCcccCchHH---HhCCCCCCEEEccCcccccc----------CCccccCCCCCCEEEcccC
Q 043235 53 PYSVGEMKELTILDLSRNNFTGKLPRPI---VSSCLSLDWLDLSNNNFYGQ----------LFPNYMNLTDLGSLYLDNN 119 (515)
Q Consensus 53 ~~~~~~l~~L~~L~L~~n~l~~~l~~~~---~~~l~~L~~L~L~~n~i~~~----------~~~~~~~l~~L~~L~L~~n 119 (515)
..++.+...|+.|+|++|.+...-...+ +...++|+.++++++..... +...+..+++|++|++++|
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 3445566777777777776642211111 23456677777766543211 1112333455555555555
Q ss_pred CCCCcC----ChhhhCCCCCcEEEcccCcCCCCcChhccCCCCccEEEccCccccccccccccCCCCCcEEeCCCCCCCC
Q 043235 120 HFSGKM----TDGLLSSTLLRVLNVSNNMLSGDIPHWIGNFSVLSVLLMSENYLQGNIPVQLNNLKSLEFIDLSENSLIS 195 (515)
Q Consensus 120 ~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 195 (515)
.+.... ...+...++|++|++++|.+.......++. .+..+ .........+.|+.+++++|.+..
T Consensus 104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~ 172 (344)
T d2ca6a1 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLEN 172 (344)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCTG
T ss_pred ccccccccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeecccccccc
Confidence 554321 122233445555555555443110000000 00000 000011234556666666666532
Q ss_pred ---------cCCCCcccEEEcccCceeee-----ccccccCCCCccEEeccCCccCCc----CchhhhcCCCcCEEEccC
Q 043235 196 ---------LSNLSFVKHIYLQNNAIKGL-----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINERSNLHVLLLRG 257 (515)
Q Consensus 196 ---------l~~l~~L~~L~L~~n~i~~~-----~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~ 257 (515)
+...+.+++|++++|.++.. ....+..+++|+.|++++|.++.. +...+..+++|++|+|++
T Consensus 173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~ 252 (344)
T d2ca6a1 173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252 (344)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence 12345677777777776542 234567789999999999998643 345567889999999999
Q ss_pred ccCCCCCCcc----cc--CCCCCCEEECCCCcCcC
Q 043235 258 NYLQGRIPNQ----LC--QLRKLSIMDLSRNRLNG 286 (515)
Q Consensus 258 n~i~~~~~~~----~~--~l~~L~~L~L~~n~i~~ 286 (515)
|.|++..... +. ..+.|++|++++|.|+.
T Consensus 253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~ 287 (344)
T d2ca6a1 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 287 (344)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence 9998543222 32 24679999999999864
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=9e-15 Score=116.78 Aligned_cols=102 Identities=26% Similarity=0.345 Sum_probs=73.2
Q ss_pred cEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEEEccc
Q 043235 39 IYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSLYLDN 118 (515)
Q Consensus 39 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 118 (515)
|+|+|++|+++ ..+ .+.++++|++|++++|+++ .+|..+ ..+++|++|++++|.|+.. +.+..+++|++|++++
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~-~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALENV--DGVANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhh-hhhhccccccccccccccc--CccccccccCeEECCC
Confidence 57788888887 333 4777888888888888887 777654 6678888888888887643 3577777778888877
Q ss_pred CCCCCcC-ChhhhCCCCCcEEEcccCcCC
Q 043235 119 NHFSGKM-TDGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 119 n~i~~~~-~~~~~~l~~L~~L~l~~n~l~ 146 (515)
|+++... ...+..+++|++|++++|+++
T Consensus 75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 7776432 245667777777777777765
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=4.4e-14 Score=117.72 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=96.8
Q ss_pred ccCCEEEcCCCcCccccccchhccccCCeeccCCc-cccccChhhhcCccCCCeeeCCCCcccccCCccccCCCCCCEEe
Q 043235 361 NYMAGLDLSGNEFSGEIPWKIGQLQNIRALNLSNN-LLSGAIPESFSNLKMIESLDLSRNKLSGQIPPQLTELNFLSNFN 439 (515)
Q Consensus 361 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 439 (515)
...+.++.+++.+. ..|..+..+++|++|++++| .++.+.+.+|.++++|+.|+|++|+|+...+..|..+++|++|+
T Consensus 8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 34566888998888 66777888999999999876 58877888999999999999999999988889999999999999
Q ss_pred cccCcccccCCCCcccCCCCcccccCCCCCCCCcc
Q 043235 440 VSYNNLSGPIPDKEQFATFDDCSYKGNSALCGSMI 474 (515)
Q Consensus 440 Ls~N~l~~~~p~~~~~~~l~~~~~~gn~~~c~~~l 474 (515)
|++|+++...+.......+..+.+.|||+.|+|.+
T Consensus 87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~ 121 (156)
T d2ifga3 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121 (156)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred ccCCCCcccChhhhccccccccccCCCcccCCchH
Confidence 99999996656555556788999999999998865
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.43 E-value=3.6e-15 Score=129.88 Aligned_cols=129 Identities=26% Similarity=0.294 Sum_probs=79.3
Q ss_pred CCCccEEeCcCC--cCCCCCchhHHhcccCCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 10 YDKLRHLDISSN--NFSGKLPENLGIIFQKLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 10 ~~~L~~L~ls~n--~l~~~~p~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
....+.+++++. .+. .++..+.. +++|++|+|++|+|+. ++ .+.++++|++|++++|.++ .+|.. +..+++|
T Consensus 22 ~~~~~~~~l~~~~~~i~-~l~~sl~~-L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~-~~~~~~L 95 (198)
T d1m9la_ 22 ATEAEKVELHGMIPPIE-KMDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL-DAVADTL 95 (198)
T ss_dssp CTTCSCEECCBCCTTCC-CCHHHHHH-TTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSH-HHHHHHC
T ss_pred ccccceeeeecccCchh-hhhhHHhc-ccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccc-ccccccc
Confidence 344555666554 344 55566655 6777777777777773 33 4667777777777777776 56532 2334567
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEcccCCCCCcCC-hhhhCCCCCcEEEcccCcCC
Q 043235 88 DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFSGKMT-DGLLSSTLLRVLNVSNNMLS 146 (515)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~ 146 (515)
++|++++|+++.. +.+..+++|++|++++|+++.... ..+..+++|++|++++|++.
T Consensus 96 ~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 96 EELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp CEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred ccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence 7777777777642 345666667777777776653321 34566666666666666654
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.41 E-value=3.5e-15 Score=130.00 Aligned_cols=144 Identities=22% Similarity=0.247 Sum_probs=106.7
Q ss_pred CCcEEECcCC--cccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 043235 37 KLIYLDMSKN--NFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQLFPNYMNLTDLGSL 114 (515)
Q Consensus 37 ~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 114 (515)
..+.+++++. .+. ..+.++..+++|++|+|++|+|+ .++. +..+++|++|++++|.|+. ++..+..+++|++|
T Consensus 24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L 98 (198)
T d1m9la_ 24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIKK-IENLDAVADTLEEL 98 (198)
T ss_dssp TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCCC--HHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEE
T ss_pred ccceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Cccc--ccCCccccChhhccccccc-cccccccccccccc
Confidence 4566677654 243 45567888999999999999998 7764 5778999999999999874 34445556789999
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcC-hhccCCCCccEEEccCcccccccccc----------ccCCCCC
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIP-HWIGNFSVLSVLLMSENYLQGNIPVQ----------LNNLKSL 183 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----------l~~l~~L 183 (515)
++++|+++.. ..+..+++|++|++++|+++.... ..+..+++|+.|++++|.+....+.. +..+++|
T Consensus 99 ~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L 176 (198)
T d1m9la_ 99 WISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp ECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSC
T ss_pred cccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCc
Confidence 9999998743 457788889999999999874322 46788899999999999877543322 4456677
Q ss_pred cEEe
Q 043235 184 EFID 187 (515)
Q Consensus 184 ~~L~ 187 (515)
+.||
T Consensus 177 ~~LD 180 (198)
T d1m9la_ 177 KKLD 180 (198)
T ss_dssp CEES
T ss_pred CEeC
Confidence 7665
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5.2e-13 Score=111.10 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=69.0
Q ss_pred CCCCccEEeCcCCcCCCCCchhHHhcccCCcEEECcCC-cccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCC
Q 043235 9 KYDKLRHLDISSNNFSGKLPENLGIIFQKLIYLDMSKN-NFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSL 87 (515)
Q Consensus 9 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L 87 (515)
.+...+.++++++++. .+|..+.. +++|++|++++| .++...+.+|.++++|+.|++++|+|+ .++...|..+++|
T Consensus 6 ~c~~~~~l~c~~~~~~-~~p~~l~~-l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L 82 (156)
T d2ifga3 6 CPHGSSGLRCTRDGAL-DSLHHLPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL 82 (156)
T ss_dssp CCSSSSCEECCSSCCC-TTTTTSCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCC
T ss_pred CcCCCCeEEecCCCCc-cCcccccC-ccccCeeecCCCccccccCchhhccccccCcceeeccccC-Ccccccccccccc
Confidence 3444556777777766 56665544 566777777554 366555566777777777777777776 6666666667777
Q ss_pred CEEEccCccccccCCccccCCCCCCEEEcccCCCC
Q 043235 88 DWLDLSNNNFYGQLFPNYMNLTDLGSLYLDNNHFS 122 (515)
Q Consensus 88 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 122 (515)
++|+|++|+++...+..|..+ +|++|+|++|.+.
T Consensus 83 ~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~ 116 (156)
T d2ifga3 83 SRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116 (156)
T ss_dssp CEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred cceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence 777777777764444444333 5666666666664
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=4.6e-09 Score=87.34 Aligned_cols=121 Identities=21% Similarity=0.113 Sum_probs=72.0
Q ss_pred CCcEEECcCCcccccCCccccCCCCCCEEECcCCcCcccCchHHHhCCCCCCEEEccCccccccC--CccccCCCCCCEE
Q 043235 37 KLIYLDMSKNNFEGNIPYSVGEMKELTILDLSRNNFTGKLPRPIVSSCLSLDWLDLSNNNFYGQL--FPNYMNLTDLGSL 114 (515)
Q Consensus 37 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L 114 (515)
..+.|++++.... ..+..+..+..++...+... .+ ..++..+++|++|++++|+|+... +..+..+++|+.|
T Consensus 23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l-~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L 96 (162)
T d1koha1 23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TL-RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96 (162)
T ss_dssp SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HH-HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCC
T ss_pred hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hh-HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccc
Confidence 4556666654422 12444445555555554443 33 344566788888888888887532 2345667788888
Q ss_pred EcccCCCCCcCChhhhCCCCCcEEEcccCcCCCCcCh-------hccCCCCccEEE
Q 043235 115 YLDNNHFSGKMTDGLLSSTLLRVLNVSNNMLSGDIPH-------WIGNFSVLSVLL 163 (515)
Q Consensus 115 ~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~ 163 (515)
++++|.|+....-.+.....|+.|++++|++...... .+..+++|+.||
T Consensus 97 ~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 97 NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp CCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred ccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 8888887754443444555677788888877644332 244566666654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=5.7e-08 Score=80.50 Aligned_cols=81 Identities=23% Similarity=0.177 Sum_probs=52.3
Q ss_pred ccccCCEEEcCCCcCcccc--ccchhccccCCeeccCCccccccChhhhcCccCCCeeeCCCCcccccCC-------ccc
Q 043235 359 NLNYMAGLDLSGNEFSGEI--PWKIGQLQNIRALNLSNNLLSGAIPESFSNLKMIESLDLSRNKLSGQIP-------PQL 429 (515)
Q Consensus 359 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~l 429 (515)
.+++|++|+|++|+++... +..+..+++|+.|+|++|+|+...+-.+.....|+.|++++|++..... ..+
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~ 142 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR 142 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence 3677777888888777432 3445667777777887777775444344445567777777777764433 224
Q ss_pred cCCCCCCEEe
Q 043235 430 TELNFLSNFN 439 (515)
Q Consensus 430 ~~l~~L~~L~ 439 (515)
..+|+|+.||
T Consensus 143 ~~~P~L~~LD 152 (162)
T d1koha1 143 ERFPKLLRLD 152 (162)
T ss_dssp TTSTTCCEET
T ss_pred HHCCCCCEEC
Confidence 5667777665
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.86 E-value=9.1e-06 Score=67.11 Aligned_cols=86 Identities=12% Similarity=0.157 Sum_probs=40.7
Q ss_pred cCCcEEECcCC-ccccc----CCccccCCCCCCEEECcCCcCcccCc---hHHHhCCCCCCEEEccCccccccCC----c
Q 043235 36 QKLIYLDMSKN-NFEGN----IPYSVGEMKELTILDLSRNNFTGKLP---RPIVSSCLSLDWLDLSNNNFYGQLF----P 103 (515)
Q Consensus 36 ~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~l~---~~~~~~l~~L~~L~L~~n~i~~~~~----~ 103 (515)
++|++|+|+++ .++.. +..++...++|++|+|++|.+..... ...+...+.|++|++++|.++.... .
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~ 94 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 94 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence 45666666553 34321 22334455566666666665542110 1122344556666666665543221 2
Q ss_pred cccCCCCCCEEEcccCCC
Q 043235 104 NYMNLTDLGSLYLDNNHF 121 (515)
Q Consensus 104 ~~~~l~~L~~L~L~~n~i 121 (515)
++...+.|++|++++|.+
T Consensus 95 aL~~n~sL~~L~l~~n~~ 112 (167)
T d1pgva_ 95 STLVTQSIVEFKADNQRQ 112 (167)
T ss_dssp HTTTTCCCSEEECCCCSS
T ss_pred HHHhCCcCCEEECCCCcC
Confidence 233444555555555543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.82 E-value=7.1e-06 Score=67.80 Aligned_cols=87 Identities=10% Similarity=0.134 Sum_probs=38.9
Q ss_pred CCCCCCEEECcCC-cCcccCch---HHHhCCCCCCEEEccCccccccCC----ccccCCCCCCEEEcccCCCCCcC----
Q 043235 58 EMKELTILDLSRN-NFTGKLPR---PIVSSCLSLDWLDLSNNNFYGQLF----PNYMNLTDLGSLYLDNNHFSGKM---- 125 (515)
Q Consensus 58 ~l~~L~~L~L~~n-~l~~~l~~---~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~~~~---- 125 (515)
+.++|++|+|+++ .+....-. ..+...++|++|++++|.+..... ..+...+.|++|++++|.+....
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 3466666666653 34311111 112344556666666666542221 12233445555555555554211
Q ss_pred ChhhhCCCCCcEEEcccCc
Q 043235 126 TDGLLSSTLLRVLNVSNNM 144 (515)
Q Consensus 126 ~~~~~~l~~L~~L~l~~n~ 144 (515)
..++...+.|++|++++|.
T Consensus 93 ~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhCCcCCEEECCCCc
Confidence 1223333445555554443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.24 E-value=6.3e-05 Score=61.79 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=64.4
Q ss_pred ccCCcEEECcC-Cccccc----CCccccCCCCCCEEECcCCcCcccCch---HHHhCCCCCCEEEccCccccccC----C
Q 043235 35 FQKLIYLDMSK-NNFEGN----IPYSVGEMKELTILDLSRNNFTGKLPR---PIVSSCLSLDWLDLSNNNFYGQL----F 102 (515)
Q Consensus 35 ~~~L~~L~L~~-n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~l~~---~~~~~l~~L~~L~L~~n~i~~~~----~ 102 (515)
.+.|++|+|++ +.++.. +..++...++|++|++++|.++...-. ..+...++++.+++++|.+.... .
T Consensus 16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~ 95 (166)
T d1io0a_ 16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 95 (166)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence 46777777776 345421 223455677777777777776522111 12345667778887777765322 2
Q ss_pred ccccCCCCCCEEEcc--cCCCCC----cCChhhhCCCCCcEEEcccCc
Q 043235 103 PNYMNLTDLGSLYLD--NNHFSG----KMTDGLLSSTLLRVLNVSNNM 144 (515)
Q Consensus 103 ~~~~~l~~L~~L~L~--~n~i~~----~~~~~~~~l~~L~~L~l~~n~ 144 (515)
..+...++|+.++|+ +|.+.. .+...+...+.|++|++..+.
T Consensus 96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 445566777765554 455542 233445567788888887654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.22 E-value=6.2e-05 Score=61.83 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=28.3
Q ss_pred cCCCCCCEEECcC-CcCcccCch---HHHhCCCCCCEEEccCccccccCC----ccccCCCCCCEEEcccCCCC
Q 043235 57 GEMKELTILDLSR-NNFTGKLPR---PIVSSCLSLDWLDLSNNNFYGQLF----PNYMNLTDLGSLYLDNNHFS 122 (515)
Q Consensus 57 ~~l~~L~~L~L~~-n~l~~~l~~---~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~i~ 122 (515)
.+.++|++|++++ +.++...-. ..+...++|++|++++|.++.... ..+...+.++.+++++|.+.
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 3445666666665 234311111 112344555555555555542211 12233344455555444443
|