Citrus Sinensis ID: 043236

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MANANNSEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLVAVVIIIVIATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDGKIKLIKVLKKSVVLKMNCSIIYNISSQAVQQECRGQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEEEcccEEEEEEEEEEEEEEcccccccccccEEEEEEEEEEEEcccEEEEEEEcEEEEEEEccEEEEcccccccccccccEEEEEEEEEEccccccccccHHHHHcccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccEEcccccccccccEEEEEEEEEEEEEcccccEEEEcccEEEEEEccEEEEEEEcccccccccccEEEEEEEEEEcHHHcccccHHHHHHcccEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEEcccccHHHHcccc
Coil and Loop (DISEMBL)
manannseqvkplapaeyhlrsdyedqamsggkltLQHRRRCLQCFGCVTALLLVAVVIIIVIATVFhvknpsirmnSVTIQRLEflnnssvrssgdenvTLLADVsvknpnynsfkygntttsIYYGgvvvgeghipQAQAKARRTLRMNVTvdlnpekfltvpslksdilsrslnmssytridGKIKLIKVLKKSVVLKMNCSIIYNISSQAVQQECRGQ
Flexible Loop (DISEMBL)
manannseqvkplapAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLVAVVIIIVIATvfhvknpsirMNSVTIQRLEFlnnssvrssgdENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVdlnpekfltvpslksdilsrslnmssytridgkikLIKVLKKSVVLKMNCSIIynissqavqqecrgq
Low Complexity Region (SEG)
MANANNSEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCvtalllvavviiiviatvFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDGkiklikvlkksvvlkMNCSIIYNISSQAVQQECRGQ
Disordered region (IsUnstruct)
********************************KLTLQHRRRCLQCFGCVTALLLVAVVIIIVIATVFHVKNPSIRMNSVTIQRLEFLNN*********NVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDGKIKLIKVLKKSVVLKMNCSIIYNIS***********
Disordered Region (DISOPRED)
******************************************LQCFGCVTALLLVAVVIIIVIATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQA*ARRTLRMNVTVDLNPEKFLTVPSLK*DILSRSLNMSSYTRIDGKIKLIKVLKKSVVLKMNCSIIYNISS**********
Disordered Region (DISEMBL)
**********KPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLVAVVIIIVIATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDGKIKLIKVLKKSVVLKMNCSIIYNISSQ*********
Disordered Region (DISPRO)
***********************************LQHRRRCLQCFGCVTALLLVAVVIIIVIATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDGKIKLIKVLKKSVVLKMNCSIIYNISSQA********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MANANNSEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLVAVVIIIVIATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDGKIKLIKVLKKSVVLKMNCSIIYNISSQAVQQECRGQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
225454320	220	PREDICTED: uncharacterized protein LOC10	0.941	0.95	0.474	5e-53
224058429	219	predicted protein [Populus trichocarpa]	0.918	0.931	0.518	9e-53
224072044	219	predicted protein [Populus trichocarpa]	0.914	0.926	0.549	3e-51
255541728	218	conserved hypothetical protein [Ricinus	0.941	0.958	0.479	7e-51
255537615	222	conserved hypothetical protein [Ricinus	0.968	0.968	0.511	5e-50
350534998	226	plant cell wall protein SlTFR88 [Solanum	0.945	0.929	0.486	2e-45
359474305	214	PREDICTED: uncharacterized protein LOC10	0.914	0.948	0.488	5e-44
224064075	217	predicted protein [Populus trichocarpa]	0.878	0.898	0.463	2e-41
255639066	219	unknown [Glycine max]	0.945	0.958	0.455	3e-40
356560687	219	PREDICTED: uncharacterized protein LOC10	0.945	0.958	0.460	6e-40

>gi|225454320|ref|XP_002277286.1| PREDICTED: uncharacterized protein LOC100258567 [Vitis vinifera] gi|147832282|emb|CAN73280.1| hypothetical protein VITISV_040609 [Vitis vinifera] gi|297745338|emb|CBI40418.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/215 (47%), Positives = 159/215 (73%), Gaps = 6/215 (2%)

Query: 8   EQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLV-AVVIIIVIATV 66
           EQV+PLAPA + L S  ED  ++   L+   RRRC++C+GC+ A +L+ A V+II++ TV
Sbjct: 5   EQVRPLAPASHRLSS--EDDKVTN-HLSRLRRRRCIKCWGCIAATILIQAAVVIILVFTV 61

Query: 67  FHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIY 126
           F VK+P I++N  T+ +LE +N ++    G  N++L ADVSVKNPN+ SF+Y NTTT+++
Sbjct: 62  FRVKDPVIKLNGFTVDKLELINGTTTPGPG-VNMSLTADVSVKNPNFASFRYKNTTTTLF 120

Query: 127 YGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDG 186
           Y G V+GE   P  QAKARRT++MNVT+++  +  ++ PSL +DI S  L M++Y+R+ G
Sbjct: 121 YSGTVIGEARGPPGQAKARRTMKMNVTIEIILDSLMSNPSLLTDISSGILPMNTYSRVPG 180

Query: 187 KIKLIKVLKKSVVLKMNCSIIYNISSQAVQ-QECR 220
           ++K++K++KK VV+KMNCS+  NI+S+++Q Q+C+
Sbjct: 181 RVKMLKIIKKHVVVKMNCSVTVNITSRSIQEQKCK 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058429|ref|XP_002299505.1| predicted protein [Populus trichocarpa] gi|222846763|gb|EEE84310.1| predicted protein [Populus trichocarpa]

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 156/212 (73%), Gaps = 8/212 (3%)

Query: 7   SEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLVAVVIIIVIATV 66
           +EQ KPLAPA   +RS  E+   +   L+  HRR C++C GC+TA+LL+    ++V+   
Sbjct: 4   TEQAKPLAPAALRIRSVEEENMPT---LSKTHRRNCIKCCGCITAILLILATTVVVLVLT 60

Query: 67  -FHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSI 125
            F V +P I+MN V++QRLE L N ++R+  D NVTLLADVSVKNPN  +FK+ N TT++
Sbjct: 61  VFQVDDPVIKMNKVSVQRLE-LANGTLRT--DVNVTLLADVSVKNPNAAAFKFKNGTTTV 117

Query: 126 YYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILS-RSLNMSSYTRI 184
           Y GGV+VGE + P  +AKARRTL MNVTVDL P+K L+VPSL SD++S R L MSS T I
Sbjct: 118 YCGGVMVGEANTPPGKAKARRTLHMNVTVDLIPKKLLSVPSLMSDVVSVRKLTMSSNTVI 177

Query: 185 DGKIKLIKVLKKSVVLKMNCSIIYNISSQAVQ 216
            GK+++++++KK +V+++NC++ YN +SQA+Q
Sbjct: 178 GGKVRILQIIKKYLVVRVNCTMTYNFTSQAIQ 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072044|ref|XP_002303614.1| predicted protein [Populus trichocarpa] gi|222841046|gb|EEE78593.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/213 (54%), Positives = 155/213 (72%), Gaps = 10/213 (4%)

Query: 7   SEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRR-CLQCFGCVTALLL-VAVVIIIVIA 64
           +EQVKPLAPA + +RSD E++ M    + L+ RRR C++C GC+TA+LL VAV I++++ 
Sbjct: 4   TEQVKPLAPAAFQIRSD-EEETMP---VQLKTRRRNCIKCCGCITAMLLIVAVTIVVLVL 59

Query: 65  TVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTS 124
           TVFHVK+P I+MN V +QRLE L N ++R+  D NVTLLADVSVKNPN  SFK+   TT+
Sbjct: 60  TVFHVKDPVIKMNRVFVQRLE-LANGTLRT--DVNVTLLADVSVKNPNAASFKFEKGTTT 116

Query: 125 IYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRS-LNMSSYTR 183
           IYYGG VVGE + P   AKARRTL MNVTVDL P K L VP   SDI S   LNM+S T 
Sbjct: 117 IYYGGAVVGEANTPPGMAKARRTLHMNVTVDLIPAKLLAVPRSFSDIRSAGELNMTSSTI 176

Query: 184 IDGKIKLIKVLKKSVVLKMNCSIIYNISSQAVQ 216
           I GK++++   KK +V+ +NC++ YN++S+ + 
Sbjct: 177 ISGKVRILHTFKKYIVVGVNCTVTYNLASREIH 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541728|ref|XP_002511928.1| conserved hypothetical protein [Ricinus communis] gi|223549108|gb|EEF50597.1| conserved hypothetical protein [Ricinus communis]

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 155/217 (71%), Gaps = 8/217 (3%)

Query: 8   EQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLV-AVVIIIVIATV 66
           EQV+PLAP+     SD E+  +   K     RRRC++C GC+TA LLV A+VI+I+I TV
Sbjct: 5   EQVRPLAPSADRTSSDDEEATIHLKK---TRRRRCIKCCGCITASLLVPAIVIVILIFTV 61

Query: 67  FHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIY 126
           F VK+P+I++N+V I  +E +NN+  +     N++L+AD+SVKNPN  SFKY NTT+++Y
Sbjct: 62  FRVKDPTIKLNNVIITHMELINNTIPKPG--TNISLVADLSVKNPNIVSFKYDNTTSALY 119

Query: 127 YGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDG 186
           Y GV+VGE   P   +KARRT+R+N T+DL  +K ++ P+L +D  +  L + SYT++ G
Sbjct: 120 YHGVLVGEARGPPGHSKARRTMRLNATIDLVADKLISNPNLNTDAATGLLTVDSYTKLPG 179

Query: 187 KIKLIKVLKKSVVLKMNCSIIYNISSQAVQ-QECRGQ 222
           K+K++ ++KK V +KMNCS+  NISSQA+Q Q+C+ +
Sbjct: 180 KVKIL-IIKKHVTIKMNCSLTVNISSQAIQSQKCKNK 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537615|ref|XP_002509874.1| conserved hypothetical protein [Ricinus communis] gi|223549773|gb|EEF51261.1| conserved hypothetical protein [Ricinus communis]

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 112/219 (51%), Positives = 149/219 (68%), Gaps = 4/219 (1%)

Query: 4   ANNSEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRR-CLQCFGCVTA-LLLVAVVIII 61
           A+  +Q KPLAPA +  RSD E  A S        R R C++CFGC TA LL++AV I+I
Sbjct: 2   ADTDQQAKPLAPAAFQSRSDEEAAASSSITTQFNFRHRNCIKCFGCCTAFLLIIAVTILI 61

Query: 62  VIATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNT 121
           +  TVFHVKNP I+MN +T+ +LE   + S+R+    NVTL  D+SVKNPN   F++ N 
Sbjct: 62  LFFTVFHVKNPVIKMNEITLLQLELNKDGSLRNG--TNVTLELDISVKNPNVAPFRFNNF 119

Query: 122 TTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSY 181
           TT++ YGG  VGE   P   AKARRT+ MNVTVDL PEK L VP L  D+ S +L M+S 
Sbjct: 120 TTTVLYGGNNVGEARTPSGTAKARRTVHMNVTVDLIPEKILQVPGLLQDVSSGNLTMNSS 179

Query: 182 TRIDGKIKLIKVLKKSVVLKMNCSIIYNISSQAVQQECR 220
           T I GK+K++K++KK +V+++NCS+ YN SS+ +QQ CR
Sbjct: 180 TVIGGKVKILKIVKKYLVVEVNCSVTYNFSSKEIQQRCR 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534998|ref|NP_001233914.1| plant cell wall protein SlTFR88 [Solanum lycopersicum] gi|94549041|gb|ABF39005.1| plant cell wall protein SlTFR88 [Solanum lycopersicum]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/218 (48%), Positives = 149/218 (68%), Gaps = 8/218 (3%)

Query: 8   EQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCV-TALLLVAVVIIIVIATV 66
           +QV+PLAPA     S  +D      K    H+RRC +   CV T + LVA++III+I TV
Sbjct: 5   DQVRPLAPASDRPHSSDDDDTTLNIKKRF-HQRRCFKYCACVSTFVFLVAIIIIILIFTV 63

Query: 67  FHVKNPSIRMNSVTIQRLEFLNNSS----VRSSGDENVTLLADVSVKNPNYNSFKYGNTT 122
           F +K+P I MN VTI++L+ +N S     +   G  N+T+ ADVSVKNPNY+SFKY NTT
Sbjct: 64  FKIKDPIITMNGVTIEKLDLVNTSGTLLPIPKPG-SNMTIKADVSVKNPNYSSFKYSNTT 122

Query: 123 TSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYT 182
           T+I Y   V+GE   P  ++KAR+T+RMNVT+D+  +K ++ P L+ DI S  L M+SYT
Sbjct: 123 TTISYRDAVIGEARGPPGKSKARKTMRMNVTIDIMTDKIMSHPGLQDDISSGLLTMNSYT 182

Query: 183 RIDGKIKLIKVLKKSVVLKMNCSIIYNISSQAVQ-QEC 219
            + G++KL+ ++KK VV+KMNCSI  NI+SQ++Q Q+C
Sbjct: 183 SVGGRVKLLNMIKKYVVVKMNCSITVNITSQSIQDQKC 220

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474305|ref|XP_002272605.2| PREDICTED: uncharacterized protein LOC100246818 [Vitis vinifera]

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 105/215 (48%), Positives = 159/215 (73%), Gaps = 12/215 (5%)

Query: 8   EQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLVAVVIIIVIA-TV 66
           +Q KPLAPA Y+LRSD E++AMS  +L     R+ ++C GC+TAL+L+  VI++V+A T+
Sbjct: 5   DQSKPLAPAGYNLRSD-EEEAMSR-ELKKLPPRKYIKCCGCITALILIQAVILLVLAFTI 62

Query: 67  FHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIY 126
           F VK+P I+MN + I  LE  +++        N+TL+ADVSVKNPN  SF + N TTSI 
Sbjct: 63  FRVKDPVIKMNGMRIGPLELEDST--------NLTLVADVSVKNPNVASFIFSNATTSIT 114

Query: 127 YGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDG 186
           Y G V+G+   P  +AKARRTLRMNVTV++ PEK + + ++ + + SR++N+SSYTRI G
Sbjct: 115 YNGTVIGQARTPPGKAKARRTLRMNVTVEIIPEKIMAIMAVTTLLSSRAINISSYTRISG 174

Query: 187 KIKLIKVLKKSVVLKMNCSIIYNISSQAVQ-QECR 220
           ++K+IK++KK+VV+K+NC+++ N++S+ +Q Q C+
Sbjct: 175 RVKIIKIIKKNVVVKLNCTMMVNLTSREIQGQSCK 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064075|ref|XP_002301379.1| predicted protein [Populus trichocarpa] gi|222843105|gb|EEE80652.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 137/203 (67%), Gaps = 8/203 (3%)

Query: 8   EQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLVAVVIIIVIA-TV 66
           EQV+PLAPA     SD E       K   +  R+C++C   VTA+ ++ V  IIV+  TV
Sbjct: 5   EQVRPLAPAAERRCSDEE----GASKHHKKRSRKCVKCCVFVTAIFVILVTAIIVLRFTV 60

Query: 67  FHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIY 126
           F VK+P I MNS TI +LE  N ++ +     N+TL+ADVSVKNPN  SFKY NTTT++Y
Sbjct: 61  FRVKDPVITMNSFTITKLELSNGTTPKPG--VNITLIADVSVKNPNVASFKYSNTTTTLY 118

Query: 127 YGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDG 186
           Y   +VGE       A+ARRT+RMNVTVD+ P++ ++ P+L +D+ S  L+M++YTR+ G
Sbjct: 119 YDRQIVGEARNGPGHARARRTMRMNVTVDIIPDRIMSNPNLNADMSSGILSMTTYTRVPG 178

Query: 187 KIKLIKVLKKSVVLKMNCSIIYN 209
           ++K++ ++K+++V+KM CSI  N
Sbjct: 179 RMKIV-IVKRNIVVKMTCSITLN 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639066|gb|ACU19833.1| unknown [Glycine max]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/215 (45%), Positives = 149/215 (69%), Gaps = 5/215 (2%)

Query: 7   SEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLVAVVIIIVIATV 66
           +EQ +PLAP+     SD ++ A      T  H++   +C   + +LLL+A+VII++I TV
Sbjct: 4   TEQARPLAPSIERQSSDEDNTA--PHPQTQGHKKLIKRCACPLISLLLIAIVIIVLIFTV 61

Query: 67  FHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIY 126
           F VK+P I MNS+ I +L+ +N  S +     N++L+ADVSVKNPN  SF+Y NTTTS+Y
Sbjct: 62  FRVKDPVITMNSIKITKLQLVNTMSQQPGA--NMSLVADVSVKNPNVASFRYSNTTTSLY 119

Query: 127 YGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDG 186
           Y GV+VGE   P  +AKARRTLRMNVT+D+   + ++ P   +D+ S  L MSS++R+ G
Sbjct: 120 YHGVIVGEARGPPGRAKARRTLRMNVTIDVIAARVISSPDFVTDLGSGLLTMSSFSRVPG 179

Query: 187 KIKLIKVLKKSVVLKMNCSIIYNISSQAV-QQECR 220
           ++K++ ++K+ VV+KMNC+  +NIS+QA+ +Q C+
Sbjct: 180 QVKILNLIKRHVVVKMNCTTTFNISTQAIKEQSCK 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560687|ref|XP_003548621.1| PREDICTED: uncharacterized protein LOC100799820 [Glycine max]

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 149/215 (69%), Gaps = 5/215 (2%)

Query: 7   SEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLVAVVIIIVIATV 66
           +EQ +PLAP+     SD ED      + T  H++   +C   + +LLL+A+VII++I TV
Sbjct: 4   TEQARPLAPSIERQSSD-EDNTTPHPQ-TQGHKKLIKRCACPLISLLLIAIVIIVLIFTV 61

Query: 67  FHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIY 126
           F VK+P I MNS+ I +L+ +N  S +     N++L+ADVSVKNPN  SF+Y NTTTS+Y
Sbjct: 62  FRVKDPVITMNSIKITKLQLVNTMSQQPGA--NMSLVADVSVKNPNVASFRYSNTTTSLY 119

Query: 127 YGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDG 186
           Y GV+VGE   P  +AKARRTLRMNVT+D+   + ++ P   +D+ S  L MSS++R+ G
Sbjct: 120 YHGVIVGEARGPPGRAKARRTLRMNVTIDVITARVISSPDFVTDLGSGLLTMSSFSRVPG 179

Query: 187 KIKLIKVLKKSVVLKMNCSIIYNISSQAV-QQECR 220
           ++K++ ++K+ VV+KMNC+  +NIS+QA+ +Q C+
Sbjct: 180 QVKILNLIKRHVVVKMNCTTTFNISTQAIKEQSCK 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2062917	221	AT2G46150 "AT2G46150" [Arabido	0.941	0.945	0.381	3.8e-30
TAIR|locus:2080320	235	AT3G54200 "AT3G54200" [Arabido	0.963	0.910	0.246	4.7e-16
TAIR|locus:2128464	228	AT4G23610 "AT4G23610" [Arabido	0.801	0.780	0.281	2e-15
TAIR|locus:1006230721	214	AT1G64065 "AT1G64065" [Arabido	0.887	0.920	0.235	3.1e-08
TAIR|locus:2051774	209	AT2G44000 "AT2G44000" [Arabido	0.540	0.574	0.286	1.9e-06
TAIR|locus:504955821	189	AT3G05975 "AT3G05975" [Arabido	0.680	0.798	0.219	4e-06

TAIR|locus:2062917 AT2G46150 "AT2G46150" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 84/220 (38%), Positives = 120/220 (54%)

Query:     6 NSEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCXXXXXXXXXXXXXXXXX 65
             +SE V+PLAPA         D++ S  K T + R R ++C  C                 
Sbjct:     3 DSEHVRPLAPATI---LPVSDESASNIKNTHRSRNR-IKCSICVTATSLILTTIVLTLVF 58

Query:    66 X-FHVKNPSIRMNSVTIQRLEFLNNSS-VRSSGDENVTLLADVSVKNPNYNSFKYGNTTT 123
               F VK+P I+MN V +  L+ +  ++ V+  G  N++++ DVSVKNPN  SFKY NTTT
Sbjct:    59 TVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGT-NISMIVDVSVKNPNTASFKYSNTTT 117

Query:   124 SIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRS--LNMSSY 181
              IYY G +VGE H    +A+  RT RMNVTVD+  ++ L+ P L  +I SRS  +N+ SY
Sbjct:   118 DIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDPGLGREI-SRSGLVNVWSY 176

Query:   182 TRIDGXXXXXXXXXXXXXXXMNCSIIYNISSQAVQQ-ECR 220
             TR+ G               MNC++  NI+ QA+Q  +C+
Sbjct:   177 TRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDCK 216

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2080320 AT3G54200 "AT3G54200" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 55/223 (24%), Positives = 102/223 (45%)

Query:     5 NNSEQVKP----LAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCXXXXXXXXXXXX 60
             +  E+ KP    L P + +  S     A +G    L+ +R C  C  C            
Sbjct:    10 DKKEEEKPATAMLPPPKPNASSMETQSANTGTAKKLRRKRNCKICI-CFTILLILLIAIV 68

Query:    61 XX--XXXXFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKY 118
                     F  K P+  ++SVT+ RL+   N  +      N+TL  D+S+KNPN   F Y
Sbjct:    69 IVILAFTLFKPKRPTTTIDSVTVDRLQASVNPLLLKVL-LNLTLNVDLSLKNPNRIGFSY 127

Query:   119 GNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNM 178
              +++  + Y G V+GE  +P  +  AR+T+ +N+T+ L  ++ L+   L SD+++  + +
Sbjct:   128 DSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPL 187

Query:   179 SSYTRIDGXXXXXXXXXXXXXXXMNCSIIYNISSQAV-QQECR 220
             +++ ++ G                +C +  ++S + V  Q C+
Sbjct:   188 NTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCK 230

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2128464 AT4G23610 "AT4G23610" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 53/188 (28%), Positives = 90/188 (47%)

Query:     6 NSEQVKPLAPAEYHLRSDY---EDQAMSGGKLTLQHRRRCLQCFG-CXXXXXXXXXXXXX 61
             N +Q KPLAP     RSD    EDQ        +  + + + C G               
Sbjct:     9 NEDQAKPLAPLFLTTRSDQPDEEDQYHHDRTKYVHSQTKLILCCGFIASLTMLIAVTFIV 68

Query:    62 XXXXXFHVKNPSIRMNSVTI-QRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGN 120
                  FH+ +P++ ++S++  QR +F+N    + + ++N T+  ++S+ NPN   F   N
Sbjct:    69 LSLTVFHLHSPNLTVDSISFNQRFDFVNG---KVNTNQNTTVSVEISLHNPNPALFIVKN 125

Query:   121 TTTSIYYGG-VVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFL-TVPSLKSDILSRSLNM 178
                S Y+G  VVVGE         A+RT++MN+T ++   K L ++P L  D+  R +++
Sbjct:   126 VNVSFYHGELVVVGESIRRSETIPAKRTVKMNLTAEIVKTKLLASLPGLMEDLNGRGVDL 185

Query:   179 SSYTRIDG 186
              S   + G
Sbjct:   186 KSSVEVRG 193

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1006230721 AT1G64065 "AT1G64065" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 49/208 (23%), Positives = 91/208 (43%)

Query:    13 LAPAEYHLRSDYEDQAMSGGKLTLQHRRRCL-QCFGCXXXXXXXXXXXXXXXXXXF-HVK 70
             LAP E + RSD E+Q  SG ++  +       +C                     F  + 
Sbjct:     9 LAPTEIYGRSD-EEQ--SGPRIWRRKTEEPPGKCLVYSLTIIVIIFALCLILSSIFLRIS 65

Query:    71 NPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGV 130
              P I   S++ + L    NS+   +   N TL++D+S++N N+ +F++ ++T  + Y   
Sbjct:    66 KPEIETRSISTRDLRSGGNST---NPYFNATLVSDISIRNSNFGAFEFEDSTLRVVYADH 122

Query:   131 -VVGEGHIPQAQAKARRTLRMN-VTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDGXX 188
              VVGE  I   + +A +T+R+  V V++   + L    L  D+    L + S   + G  
Sbjct:   123 GVVGETKIEGRRVEAHKTVRITGVVVEIGSFRLLDTKDLDKDLRLGFLELRSVAEVRGRI 182

Query:   189 XXXXXXXXXXXXXMNCSIIYNISSQAVQ 216
                          M+C++  N++ + +Q
Sbjct:   183 KVLGRKRWKVSV-MSCTMRLNLTGRFIQ 209

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2051774 AT2G44000 "AT2G44000" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 35/122 (28%), Positives = 60/122 (49%)

Query:    67 FHVKNP-SIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSI 125
             F +  P +  + SV ++ L + NN+S  SS   N TL  ++ ++NPN   F++  +   I
Sbjct:    55 FFIAKPLTASLTSVEVRNLRYNNNTSSSSSLYFNATLAMEIRIENPNLGFFEFPTSRGEI 114

Query:   126 YYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPS-LKSDILSRSLNMSSYTRI 184
              Y G VVGE  I   +  +   LR  V+ ++        P  LK+DI  R + + +  ++
Sbjct:   115 LYNGDVVGEMRINGQRVASFGDLRTEVSAEVAYRGNQKSPVWLKNDIERRLIILETRAKL 174

Query:   185 DG 186
              G
Sbjct:   175 RG 176

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955821 AT3G05975 "AT3G05975" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 34/155 (21%), Positives = 67/155 (43%)

Query:    67 FHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIY 126
             F  K+P ++  S T+  +    N S+      N TL  ++ +KNPN   F+Y      +Y
Sbjct:    31 FKPKHPILQTVSSTVDGIS--TNISLPYEVQLNFTLTLEMLLKNPNVADFEYKTVENLVY 88

Query:   127 YGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLT-VPSLKSDILSRSLNMSSYTRID 185
             Y   +VG   +P +   A+ ++ +   + L  +KF+  +  +  D+L   + M +  ++ 
Sbjct:    89 YRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVANLGDIVQDVLHGKIVMETRAKMP 148

Query:   186 GXXXXXXXXXXXXXXXMNCSIIYNISSQAVQ-QEC 219
             G                +C+++    S  V+ Q C
Sbjct:   149 GKITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVC 183


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      222       189   0.00089  110 3  11 22  0.46    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  149 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  16.98u 0.08s 17.06t   Elapsed:  00:00:02
  Total cpu time:  16.98u 0.08s 17.06t   Elapsed:  00:00:03
  Start:  Mon May 20 20:19:41 2013   End:  Mon May 20 20:19:44 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026913001 SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (469 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
PLN03160	219	PLN03160, PLN03160, uncharacterized protein; Provi	1e-94
pfam03168	98	pfam03168, LEA_2, Late embryogenesis abundant prot	1e-11
smart00769	100	smart00769, WHy, Water Stress and Hypersensitive r	1e-06

>gnl|CDD|215609 PLN03160, PLN03160, uncharacterized protein; Provisional

 Score =  275 bits (705), Expect = 1e-94
 Identities = 123/216 (56%), Positives = 167/216 (77%), Gaps = 7/216 (3%)

Query: 7   SEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALLLV-AVVIIIVIAT 65
           +EQV+PLAPA + LRSD E++A +   L    RR C++C GC+TA LL+ A  I++++ T
Sbjct: 4   TEQVRPLAPAAFRLRSD-EEEATN--HLKKTRRRNCIKCCGCITATLLILATTILVLVFT 60

Query: 66  VFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSI 125
           VF VK+P I+MN VT+ +LE +NN+++R     N+TL+ADVSVKNPN  SFKY NTTT+I
Sbjct: 61  VFRVKDPVIKMNGVTVTKLELINNTTLRP--GTNITLIADVSVKNPNVASFKYSNTTTTI 118

Query: 126 YYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTRID 185
           YYGG VVGE   P  +AKARRT+RMNVTVD+ P+K L+VP L +DI S  LNM+SYTRI 
Sbjct: 119 YYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSVPGLLTDISSGLLNMNSYTRIG 178

Query: 186 GKIKLIKVLKKSVVLKMNCSIIYNISSQAVQ-QECR 220
           GK+K++K++KK VV+KMNC++  NI+SQA+Q Q+C+
Sbjct: 179 GKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCK 214

Length = 219

>gnl|CDD|217400 pfam03168, LEA_2, Late embryogenesis abundant protein

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 105 DVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQA-QAKARRTLRMNVTVDLNPEKFLT 163
            + V+NPN     Y   +  + Y G  +  G  PQ     A  T  + V V ++ +    
Sbjct: 1   TLRVRNPNSFPLPYDGLSYDLSYNGQELASGTSPQPGTVPAGGTTTLEVPVTVSLDDL-- 58

Query: 164 VPSLKSDILSRSLNMSSYTRIDGKIKLIKVLKKSVVLKMNCSI 206
              L  D+L+  L       + G++K+   +K S  + ++   
Sbjct: 59  -ARLLKDLLAVGLE--LPYTLRGRLKVGGPVKGSRTVPLSKEG 98

Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family. Length = 98

>gnl|CDD|214812 smart00769, WHy, Water Stress and Hypersensitive response

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 96  GDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQA---QAKARRTLRMNV 152
               + ++  V V+NPN         +  +Y  GV +G G IP +       R  L + V
Sbjct: 11  SGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPV 70

Query: 153 TVDLNPEKFLTVPSLKSDILSRSLNMSSYTRIDGKIKL 190
           TV+L    FL   +L   I +         R+DGK+ +
Sbjct: 71  TVNL----FLAE-ALIWHIAN---GEEIPYRLDGKLTV 100

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PLN03160	219	uncharacterized protein; Provisional	100.0
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.49
smart00769	100	WHy Water Stress and Hypersensitive response.	98.82
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	98.55
COG5608	161	LEA14-like dessication related protein [Defense me	97.77
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	96.53
PF06072	60	Herpes_US9: Alphaherpesvirus tegument protein US9;	85.67
PF11395	43	DUF2873: Protein of unknown function (DUF2873); In	81.6

>PLN03160 uncharacterized protein; Provisional

Probab=100.00  E-value=3.9e-57  Score=379.12  Aligned_cols=214  Identities=56%  Similarity=0.933  Sum_probs=197.7

Q ss_pred             CCCCCCCCcCCCCcCCCCChhhhhhccCCccccccccceeeehhhHHHHH-HHHHHHHHHhhheeecCCCEEEEEEEEEe
Q 043236            4 ANNSEQVKPLAPAEYHLRSDYEDQAMSGGKLTLQHRRRCLQCFGCVTALL-LVAVVIIIVIATVFHVKNPSIRMNSVTIQ   82 (222)
Q Consensus         4 ~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~r~~~~cc~~~~~~l-ll~~i~lil~~lv~rPk~P~~~v~~~~l~   82 (222)
                      |+|+||+|||||++++.|||||+  +..+ ++++++|+|++||+|+++++ +|++++++++|++||||+|+|+|++++++
T Consensus         1 ~~~~~~~~p~a~~~~~~~~d~~~--~~~~-~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~   77 (219)
T PLN03160          1 MAETEQVRPLAPAAFRLRSDEEE--ATNH-LKKTRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVT   77 (219)
T ss_pred             CCccccCCCCCCCcccccCchhh--cCcc-hhccccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEe
Confidence            99999999999999999999998  5444 45567888888999988877 88888999999999999999999999999


Q ss_pred             eEEeecCCCCCCcceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeCCeeeccCceEEEEEEEeecccccc
Q 043236           83 RLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQAQAKARRTLRMNVTVDLNPEKFL  162 (222)
Q Consensus        83 ~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp~f~q~~r~t~~~~~~l~~~~~~l~  162 (222)
                      +|+++++  +..+..+|++|.++|+++|||+++|+|+++++.++|+|+.+|++.+|+|+|++|+|+.+++++++.++++.
T Consensus        78 ~~~~~~~--~~~~~~~n~tl~~~v~v~NPN~~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~  155 (219)
T PLN03160         78 KLELINN--TTLRPGTNITLIADVSVKNPNVASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKIL  155 (219)
T ss_pred             eeeeccC--CCCceeEEEEEEEEEEEECCCceeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceec
Confidence            9999763  23578999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             CCcccccccccCeEEEEEEEEEEEEEEEEEEEEeeeEEEEEeEEEEEccccccc-cccccc
Q 043236          163 TVPSLKSDILSRSLNMSSYTRIDGKIKLIKVLKKSVVLKMNCSIIYNISSQAVQ-QECRGQ  222 (222)
Q Consensus       163 ~~~~l~~d~~~G~v~l~~~~~v~grv~v~~~~~~~~~~~v~C~i~v~~~~~~i~-~~C~~~  222 (222)
                      ++++|.+|+++|.++|+++++++|||+++++++++++++++|++.|+..+.+++ ++|+.+
T Consensus       156 ~~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~~  216 (219)
T PLN03160        156 SVPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKRH  216 (219)
T ss_pred             cchhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEeccc
Confidence            678999999999999999999999999999999999999999999999999999 999975

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.49  E-value=9.4e-14  Score=101.76  Aligned_cols=98  Identities=27%  Similarity=0.430  Sum_probs=74.2

Q ss_pred             EEEEECCCeeeEEEeCeEEEEEECCEEEE-eEEeCCeeeccCceEEEEEEEeeccccccCCcccccccccCeEEEEEEEE
Q 043236          105 DVSVKNPNYNSFKYGNTTTSIYYGGVVVG-EGHIPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSLNMSSYTR  183 (222)
Q Consensus       105 ~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg-~~~vp~f~q~~r~t~~~~~~l~~~~~~l~~~~~l~~d~~~G~v~l~~~~~  183 (222)
                      +|+++|||.++++|++.++.++|+|..+| ....++|+|++++++.+.+.+.+....+  ...+.++. .|..++++..+
T Consensus         1 ~l~v~NPN~~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l--~~~l~~~~-~~~~~~~v~~~   77 (101)
T PF03168_consen    1 TLSVRNPNSFGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL--PRLLKDLL-AGRVPFDVTYR   77 (101)
T ss_dssp             EEEEEESSSS-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH--HHHHHHHH-HTTSCEEEEEE
T ss_pred             CEEEECCCceeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH--HHHHHhhh-ccccceEEEEE
Confidence            46789999999999999999999999999 7789999999999999999887765544  24455555 66778888889


Q ss_pred             EEEEEEE-EEEEEeeeEEEEEeE
Q 043236          184 IDGKIKL-IKVLKKSVVLKMNCS  205 (222)
Q Consensus       184 v~grv~v-~~~~~~~~~~~v~C~  205 (222)
                      ++|++++ +..+..+..+.++|+
T Consensus        78 ~~g~~~v~~~~~~~~~~v~~~~~  100 (101)
T PF03168_consen   78 IRGTFKVLGTPIFGSVRVPVSCE  100 (101)
T ss_dssp             EEEEEE-EE-TTTSCEEEEEEEE
T ss_pred             EEEEEEEcccceeeeEEEeEEeE
Confidence            9999995 443334455555553

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>smart00769 WHy Water Stress and Hypersensitive response

Probab=98.82  E-value=4.2e-08  Score=72.50  Aligned_cols=85  Identities=20%  Similarity=0.307  Sum_probs=67.2

Q ss_pred             ceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeC-CeeeccCceEEEEEEEeeccccccCCcccccccccC
Q 043236           96 GDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIP-QAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSR  174 (222)
Q Consensus        96 ~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp-~f~q~~r~t~~~~~~l~~~~~~l~~~~~l~~d~~~G  174 (222)
                      ..++.++.+.+.++|||.+++.|++.+..++|+|..+|++..+ ++.+++++++.+.+++.+. ...  ...+..++..|
T Consensus        11 ~~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~~~--~~~~~~~l~~~   87 (100)
T smart00769       11 SGLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-LFL--AEALIWHIANG   87 (100)
T ss_pred             cceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-hhH--hHHHHHhhccC
Confidence            4677888899999999999999999999999999999999986 7999999999999988873 322  24555565544


Q ss_pred             -eEEEEEEEE
Q 043236          175 -SLNMSSYTR  183 (222)
Q Consensus       175 -~v~l~~~~~  183 (222)
                       .++++++++
T Consensus        88 ~~~~y~l~g~   97 (100)
T smart00769       88 EEIPYRLDGK   97 (100)
T ss_pred             CCccEEEEEE
Confidence             355544333

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=98.55  E-value=1.1e-06  Score=74.20  Aligned_cols=91  Identities=16%  Similarity=0.281  Sum_probs=65.4

Q ss_pred             HHHHhhheeecCCCEEEEEEEEEeeEEeecCCCCCCcceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeC
Q 043236           59 IIIVIATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIP  138 (222)
Q Consensus        59 ~lil~~lv~rPk~P~~~v~~~~l~~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp  138 (222)
                      .++++||+  ||.-.++-.++......++..     ...+.+++...+.+.|||+..+.-.+.++++.|....+|.+...
T Consensus        90 ~L~iFFLf--PRsV~v~~~gv~s~~V~f~~~-----~~~v~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~  162 (238)
T PF07092_consen   90 GLVIFFLF--PRSVTVSPVGVKSVTVSFNPD-----KSTVQLNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNS  162 (238)
T ss_pred             HheEEEEe--CcEEEEecCcEEEEEEEEeCC-----CCEEEEEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEec
Confidence            33444444  876655555544444444332     24567777888999999999999999999999999999999876


Q ss_pred             Ce-eeccCceEEEEEEEee
Q 043236          139 QA-QAKARRTLRMNVTVDL  156 (222)
Q Consensus       139 ~f-~q~~r~t~~~~~~l~~  156 (222)
                      .. .+++++...+.+++..
T Consensus       163 ~~~~I~Prs~~q~~~tV~t  181 (238)
T PF07092_consen  163 NITVIGPRSSKQVNYTVKT  181 (238)
T ss_pred             ceEEecccCCceEEEEeeE
Confidence            54 6788888777775543

The function of this family is unknown.

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=97.77  E-value=0.0028  Score=50.03  Aligned_cols=90  Identities=18%  Similarity=0.289  Sum_probs=67.9

Q ss_pred             EEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEe-CCeeeccCceEEEEEEEeeccccccCCcccccccccCeE-E
Q 043236          100 VTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHI-PQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSRSL-N  177 (222)
Q Consensus       100 ~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~v-p~f~q~~r~t~~~~~~l~~~~~~l~~~~~l~~d~~~G~v-~  177 (222)
                      ..+-+.+.++|||-+.+-.......++-+|..+|++.. .++..++++...+.+++.++..++-  ..+...+..|.= +
T Consensus        50 ~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~~~~k--e~w~~hi~ngErs~  127 (161)
T COG5608          50 TEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDNSKIK--EWWVTHIENGERST  127 (161)
T ss_pred             eEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEehHHHH--HHHHHHhhccCccc
Confidence            45566778899999999999999999999999999964 6699999999999998877655542  344446665543 4


Q ss_pred             EEEEEEEEEEEEEEEE
Q 043236          178 MSSYTRIDGKIKLIKV  193 (222)
Q Consensus       178 l~~~~~v~grv~v~~~  193 (222)
                      +..  ++.+.+++++.
T Consensus       128 Ir~--~i~~~v~vg~~  141 (161)
T COG5608         128 IRV--RIKGVVKVGGM  141 (161)
T ss_pred             EEE--EEEEEEEEccE
Confidence            444  66666676664

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=96.53  E-value=0.014  Score=52.68  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=27.6

Q ss_pred             EEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEE
Q 043236           99 NVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVG  133 (222)
Q Consensus        99 n~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg  133 (222)
                      .+-|++.|.+.|||.+.|..+++++.++-+-.-+|
T Consensus       347 ELmfdl~V~A~NPn~~~V~I~d~dldIFAKS~yvg  381 (387)
T PF12751_consen  347 ELMFDLTVEAFNPNWFTVTIDDMDLDIFAKSRYVG  381 (387)
T ss_pred             eEEEeeEEEEECCCeEEEEeccceeeeEecCCccC
Confidence            45556677779999999999999999986654444

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses

Probab=85.67  E-value=0.26  Score=32.67  Aligned_cols=17  Identities=35%  Similarity=0.532  Sum_probs=8.6

Q ss_pred             cccccceeeehhhHHHH
Q 043236           36 LQHRRRCLQCFGCVTAL   52 (222)
Q Consensus        36 ~~~~r~~~~cc~~~~~~   52 (222)
                      ++|+|+|..|.++++++
T Consensus        26 r~RrRrc~~~v~~v~~~   42 (60)
T PF06072_consen   26 RRRRRRCRLAVAIVFAV   42 (60)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33555555555555444

The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument

>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins

Probab=81.60  E-value=1.4  Score=26.47  Aligned_cols=24  Identities=13%  Similarity=0.602  Sum_probs=15.2

Q ss_pred             hHHHHH-HHHHHHHHHhhheeecCC
Q 043236           48 CVTALL-LVAVVIIIVIATVFHVKN   71 (222)
Q Consensus        48 ~~~~~l-ll~~i~lil~~lv~rPk~   71 (222)
                      |.++++ .+.++.++++|.++.-++
T Consensus        12 c~l~~llflv~imliif~f~le~qd   36 (43)
T PF11395_consen   12 CFLSFLLFLVIIMLIIFWFSLEIQD   36 (43)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            445555 666667778887765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
1xo8_A	151	AT1G01470; structural genomics, protein structure	5e-05
1yyc_A	174	LEA protein, putative late embryogenesis abundant	3e-04
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	6e-04

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1 Length = 151

 Score = 41.1 bits (96), Expect = 5e-05
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 66  VFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSI 125
           +  +  P   +  V ++ +             ++V  LA VSV NP  +S      + + 
Sbjct: 16  LTAIPKPEGSVTDVDLKDV-----------NRDSVEYLAKVSVTNPYSHSIPICEISFTF 64

Query: 126 YYGGVVVGEGHIPQA---QAKARRTLRMNVTVDLN 157
           +  G  +G+G IP     +AK    L + V V  +
Sbjct: 65  HSAGREIGKGKIPDPGSLKAKDMTALDIPVVVPYS 99

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} Length = 174

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 14/99 (14%)

Query: 62  VIATVFHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNT 121
               + ++  P   ++ V  + +             + V   A VSVKNP   S      
Sbjct: 35  FAEKLANIPTPEATVDDVDFKGVTR-----------DGVDYHAKVSVKNPYSQSIPICQI 83

Query: 122 TTSIYYGGVVVGEGHIPQA---QAKARRTLRMNVTVDLN 157
           +  +      +  G IP            L + V V  +
Sbjct: 84  SYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVKVAYS 122

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304} Length = 136

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 96  GDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQA---QAKARRTLRMNV 152
            D    ++A   V+N +           +I   GV V +G+       +  +  TL+ ++
Sbjct: 14  TDSQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSL 73

Query: 153 TVD 155
            ++
Sbjct: 74  RLN 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
1yyc_A	174	LEA protein, putative late embryogenesis abundant	98.63
1xo8_A	151	AT1G01470; structural genomics, protein structure	98.27
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	98.15

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=98.63  E-value=2e-07  Score=74.61  Aligned_cols=103  Identities=19%  Similarity=0.234  Sum_probs=79.3

Q ss_pred             cCCCEEEEEEEEEeeEEeecCCCCCCcceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeCC-eeeccCce
Q 043236           69 VKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQ-AQAKARRT  147 (222)
Q Consensus        69 Pk~P~~~v~~~~l~~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp~-f~q~~r~t  147 (222)
                      -+.|++++.++++.+++..           .+++.+.++|+|||.+.+.+...+..+.-+|..++++..+. +.++++++
T Consensus        42 ~~~PeV~v~~v~~~~~~l~-----------~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~  110 (174)
T 1yyc_A           42 IPTPEATVDDVDFKGVTRD-----------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGT  110 (174)
T ss_dssp             SCCCEEEEEEEEEEEECSS-----------SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEE
T ss_pred             CCCCEEEEEEeEEeccccc-----------eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCc
Confidence            3789999999999876432           25566778889999999999999999999999999998876 89999999


Q ss_pred             EEEEEEEeeccccccCCcccccccc-cCeEEEEEEEEEE
Q 043236          148 LRMNVTVDLNPEKFLTVPSLKSDIL-SRSLNMSSYTRID  185 (222)
Q Consensus       148 ~~~~~~l~~~~~~l~~~~~l~~d~~-~G~v~l~~~~~v~  185 (222)
                      +.+.+.+.+....+.   .+.+++. .+.++.++++++.
T Consensus       111 ~~v~Vpv~v~~~~l~---~~~~~l~~~~~i~Y~L~g~L~  146 (174)
T 1yyc_A          111 TVLDVPVKVAYSIAV---SLMKDMCTDWDIDYQLDIGLT  146 (174)
T ss_dssp             EEEEEEEEESHHHHH---HTCCCCCSSEEECEEEEEEEE
T ss_pred             EEEEEEEEEEHHHHH---HHHHhcCCCCccceEEEEEEE
Confidence            999999888654332   3334442 3466665544443

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=98.27  E-value=4e-07  Score=71.20  Aligned_cols=103  Identities=20%  Similarity=0.336  Sum_probs=77.3

Q ss_pred             cCCCEEEEEEEEEeeEEeecCCCCCCcceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeCC-eeeccCce
Q 043236           69 VKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQ-AQAKARRT  147 (222)
Q Consensus        69 Pk~P~~~v~~~~l~~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp~-f~q~~r~t  147 (222)
                      -+.|++++.++++.+++.           ..+++.+.++|+|||.+.+.+...+..++-+|..++++..+. +..+++++
T Consensus        19 ~~~P~v~v~~v~~~~~~~-----------~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~   87 (151)
T 1xo8_A           19 IPKPEGSVTDVDLKDVNR-----------DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDM   87 (151)
T ss_dssp             CCSCCCBCSEEEECCCTT-----------TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSE
T ss_pred             CCCCEEEEEEeEEeccCc-----------ceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCc
Confidence            367999998888865532           235667788889999999999999999999999999998755 89999999


Q ss_pred             EEEEEEEeeccccccCCccccccc-ccCeEEEEEEEEEE
Q 043236          148 LRMNVTVDLNPEKFLTVPSLKSDI-LSRSLNMSSYTRID  185 (222)
Q Consensus       148 ~~~~~~l~~~~~~l~~~~~l~~d~-~~G~v~l~~~~~v~  185 (222)
                      +.+.+.+.+....+   ..+.+++ ..+.++.++++++.
T Consensus        88 ~~v~vpv~v~~~~l---~~~~~~l~~~~~i~Y~l~g~l~  123 (151)
T 1xo8_A           88 TALDIPVVVPYSIL---FNLARDVGVDWDIDYELQIGLT  123 (151)
T ss_dssp             EEEEECCCEEHHHH---HHHHHHHHHHSEEEEEEEEEEE
T ss_pred             EEEEEEEEEEHHHH---HHHHHhcccCCcccEEEEEEEE
Confidence            99999887764333   2333444 34677766655543

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=98.15  E-value=5.5e-05  Score=58.00  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=66.3

Q ss_pred             EEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEE-eCCeeeccCceEEEEEEEeeccccccCCcccccccccC-eE
Q 043236           99 NVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGH-IPQAQAKARRTLRMNVTVDLNPEKFLTVPSLKSDILSR-SL  176 (222)
Q Consensus        99 n~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~-vp~f~q~~r~t~~~~~~l~~~~~~l~~~~~l~~d~~~G-~v  176 (222)
                      ...|.+.+.|.|||.+.+.++.....++..|..+|++. ...+..++.+++.+.+++.++..++.  ..+.+.+..| .-
T Consensus        17 ~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~--~~~~~hi~nge~s   94 (136)
T 3but_A           17 QTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLR--EWWVTHIANGEKT   94 (136)
T ss_dssp             EEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHT--THHHHHHHTTSEE
T ss_pred             EEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhH--HHHHHHhhcCCce
Confidence            34566677889999999999999999999999999986 67899999999888888887755553  3444444444 33


Q ss_pred             EEEEEEEEEEEEEEEE
Q 043236          177 NMSSYTRIDGKIKLIK  192 (222)
Q Consensus       177 ~l~~~~~v~grv~v~~  192 (222)
                      .+++  +++.++.+++
T Consensus        95 ~l~i--~~~~~l~v~g  108 (136)
T 3but_A           95 KIRV--AIKPTIEIGG  108 (136)
T ss_dssp             EEEE--EEEEEEECC-
T ss_pred             EEEE--EEEEEEEeCC
Confidence            3444  4455555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d1xo8a_	151	b.1.25.1 (A:) Putative dessication related protein	6e-06

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 151

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.5 bits (100), Expect = 6e-06
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 14/93 (15%)

Query: 68  HVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYY 127
            +  P   +  V            ++    ++V  LA VSV NP  +S      + + + 
Sbjct: 18  AIPKPEGSVTDV-----------DLKDVNRDSVEYLAKVSVTNPYSHSIPICEISFTFHS 66

Query: 128 GGVVVGEGHIPQA---QAKARRTLRMNVTVDLN 157
            G  +G+G IP     +AK    L + V V  +
Sbjct: 67  AGREIGKGKIPDPGSLKAKDMTALDIPVVVPYS 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	98.45

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.45  E-value=3.9e-08  Score=75.17  Aligned_cols=105  Identities=20%  Similarity=0.317  Sum_probs=77.4

Q ss_pred             eecCCCEEEEEEEEEeeEEeecCCCCCCcceEEEEEEEEEEEECCCeeeEEEeCeEEEEEECCEEEEeEEeCC-eeeccC
Q 043236           67 FHVKNPSIRMNSVTIQRLEFLNNSSVRSSGDENVTLLADVSVKNPNYNSFKYGNTTTSIYYGGVVVGEGHIPQ-AQAKAR  145 (222)
Q Consensus        67 ~rPk~P~~~v~~~~l~~f~~~~~~s~~~~~~ln~tl~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~vg~~~vp~-f~q~~r  145 (222)
                      -+-+.|++++.++++.+++..           .+++.+.++|+|||.+++..+..+..++.+|..++++..+. +..+++
T Consensus        17 ~~~~kPev~l~~v~i~~v~~~-----------~~~l~~~l~V~NPN~~~l~i~~l~y~l~~~g~~ia~G~~~~~~~ipa~   85 (151)
T d1xo8a_          17 TAIPKPEGSVTDVDLKDVNRD-----------SVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAK   85 (151)
T ss_dssp             CCCCSCCCBCSEEEECCCTTT-----------EECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSS
T ss_pred             cCCCCCeEEEEEEEeeecccc-----------eEEEEEEEEEECCCCCceeeeeEEEEEEECCEEEEeEecCCCcEEcCC
Confidence            356789999999988766432           35566778889999999999999999999999999997655 789999


Q ss_pred             ceEEEEEEEeeccccccCCccccccc-ccCeEEEEEEEEEE
Q 043236          146 RTLRMNVTVDLNPEKFLTVPSLKSDI-LSRSLNMSSYTRID  185 (222)
Q Consensus       146 ~t~~~~~~l~~~~~~l~~~~~l~~d~-~~G~v~l~~~~~v~  185 (222)
                      +++.+.+.+.+....+.   .+..|+ .++.++.++++.+.
T Consensus        86 ~~~~v~vpv~v~~~~l~---~~~~~i~~~~~i~Y~l~g~l~  123 (151)
T d1xo8a_          86 DMTALDIPVVVPYSILF---NLARDVGVDWDIDYELQIGLT  123 (151)
T ss_dssp             SEEEEEECCCEEHHHHH---HHHHHHHHHSEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEEHHHHH---HHHHhhccCCCccEEEEEEEE
Confidence            99999998877533332   334444 34556655444333