Citrus Sinensis ID: 043258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
Protein Sequence
MENRSHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLDHAFHPASKWISAMFLHRWKEQPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFERRRMVVWKWYREKVTPTVQDIIHDRCSDGRRFILNMDAMSCSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAWKWDA
Secondary Structure (PSIPRED)
cccccEEEEEEEEcccccEEEEEEEEccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccEEEEEccccccccccEEEEEEEEEcccHHHHHHHccEEEEEEccEEccccccHHHHHEEEcccccEEEEEEEEEEEccHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHcccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHccccccEEEEEcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEccccEEEEEcccEEEEcccEEEcccccHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHEEEEHHHHHHHHHHccccEEEEEcEEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccEEEEEEcccEEcccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
menrshivscecsdlscdWQVTAIrdvrgkgfvitqfspkhncprldhafhpASKWISAMFLhrwkeqpsisttEVRNEIEsmygikcpewkVFCAANRAKQilgldyddgYAMLHQFKEEMEridrdnivlvetethesreeERFKRVFVCCartsyafkVHCRGilavdgweinnpcnSVMLVAAgldgnngilpvaFCEVQVEDLDSWVYFLKNINSALRlengkglcilgdgdngvEYAVEEFLPRAVYRQCCHRIFNEMvrrfptapvqhlfwsacrttsatsQECHDWLKNSNWERWALFcmphwvkctcVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFERRRMVVWKWYREKVTPTVQDIIHDRCSDGRRFILNMdamscscglwqisgipcahacrgIKYMRRKIEDYVDSMMSVQNYMstyapgmmqlpqeyawkwda
Flexible Loop (DISEMBL)
menrshivscecsdlscDWQVTAIRDVRGKGFVITQFSPKHNCPRLDHAFHPASKWISAMFLHRWKEQPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEmeridrdnIVLVEtethesreeerfkrVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFERRRMVVWKwyrekvtptvqdiihdrCSDGRRFILNMDAMSCSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAWKWDA
Low Complexity Region (SEG)
MENRSHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLDHAFHPASKWISAMFLHRWKEQPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVetethesreeerFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFERRRMVVWKWYREKVTPTVQDIIHDRCSDGRRFILNMDAMSCSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAWKWDA
Disordered region (IsUnstruct)
******IVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLDHAFHPASKWISAMFLHRWKEQPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVET*********RFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFERRRMVVWKWYREKVTPTVQDIIHDRCSDGRRFILNMDAMSCSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAWKW**
Disordered Region (DISOPRED)
*ENRSHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLDHAFHPASKWISAMFLHRWKEQPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFERRRMVVWKWYREKVTPTVQDIIHDRCSDGRRFILNMDAMSCSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQ****K***
Disordered Region (DISEMBL)
**********ECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLDHAFHPASKWISAMFLHRWKEQPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVET*********RFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFERRRMVVWKWYREKVTPTVQDIIHDRCSDGRRFILNMDAMSCSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAWKWDA
Disordered Region (DISPRO)
***RSHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLDHAFHPASKWISAMFLHRWKEQPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFERRRMVVWKWYREKVTPTVQDIIHDRCSDGRRFILNMDAMSCSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAW****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENRSHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLDHAFHPASKWISAMFLHRWKEQPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFERRRMVVWKWYREKVTPTVQDIIHDRCSDGRRFILNMDAMSCSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAWKWDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
356565507	748	PREDICTED: uncharacterized protein LOC10	0.958	0.581	0.231	5e-35
225429092	583	PREDICTED: uncharacterized protein LOC10	0.949	0.739	0.232	6e-35
77556042	895	transposon protein, putative, Mutator su	0.933	0.473	0.243	1e-33
29788811	907	putative mutator-like transposase [Oryza	0.933	0.467	0.243	1e-33
356527977	582	PREDICTED: uncharacterized protein LOC10	0.955	0.745	0.24	2e-33
449520056	582	PREDICTED: uncharacterized LOC101204073	0.960	0.749	0.229	2e-33
356548025	748	PREDICTED: uncharacterized protein LOC10	0.958	0.581	0.227	2e-33
224105815	589	predicted protein [Populus trichocarpa]	0.958	0.738	0.232	5e-33
449459624	582	PREDICTED: uncharacterized protein LOC10	0.960	0.749	0.227	9e-33
356505949	758	PREDICTED: uncharacterized protein LOC10	0.962	0.576	0.225	4e-32

>gi|356565507|ref|XP_003550981.1| PREDICTED: uncharacterized protein LOC100809446 [Glycine max]

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/483 (23%), Positives = 207/483 (42%), Gaps = 48/483 (9%)

Query: 2   ENRSHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNC--PRLDHAFHPASKWISA 59
           +N SH V+ +C    C W+V A R    +   I +    H C    +   +     W+ +
Sbjct: 213 KNDSHRVTVKCKSQGCPWRVYASRLSTTQLICIKKMHCDHTCEGSAVKAGYRATRGWVGS 272

Query: 60  MFLHRWKEQPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFK 119
           +   + K+ P+    ++ ++I+  YGI+    + + A   A++ L   Y + Y  L  F 
Sbjct: 273 IIKEKLKDSPNYKPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYIEAYTQLPLFC 332

Query: 120 EEMERIDRDNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPC 179
           E+++  +  +       T  ++E+  F R+FV    ++  F++ CR ++ +D   +N+  
Sbjct: 333 EKIKETNPGSFA-----TFTTKEDSSFHRLFVAFHASTSGFQLGCRPLIFLDTTPLNSKY 387

Query: 180 NSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNG 239
              +L A  +DGN+GI PVAF  V  E  D+W +FL+ +   L     + +  + D  NG
Sbjct: 388 QGELLAATAVDGNDGIFPVAFAVVDTETEDNWRWFLQELK--LATSTSEKITFVADFQNG 445

Query: 240 VEYAVEEFLPRAVYRQCCHRI-----------FNEMVRRF--------PTAPVQHLFWSA 280
           ++ ++ +   +  +  C   +           F+   RRF          AP    F  +
Sbjct: 446 LKKSLSDVFEKCYHSYCLRHLAEKLNKDLKGQFSHEARRFMVNDFYAAAYAPKLETFERS 505

Query: 281 CRTTSATSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRR 340
                  S E +DW+  S  E WA     +  +   ++    ++  +      E+ IT+ 
Sbjct: 506 VENIKGISPEAYDWVIQSEPEHWA-NAFFNGARYNLLSSNFGQQFYSWVSEAHELPITQM 564

Query: 341 FTAIARSTAEIFERRRMVVWKWYREKVTPTVQDIIHDRC----------SDGRRF----- 385
             A+     E    RR+   +W   K+TP+ ++++              S G  F     
Sbjct: 565 IDALRGKMMETIYTRRVESNQWM-TKLTPSKEELLQKETLVAPSLQVLFSQGSTFEVRGE 623

Query: 386 ---ILNMDAMSCSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMM 442
              I+++D   CSC  WQ++G+PC HA    + + R   DY     +V+NY  TYA  + 
Sbjct: 624 SVDIVDIDNWDCSCKGWQLTGVPCCHAIAVFECVGRSPYDYCSRYFTVENYRLTYAESIH 683

Query: 443 QLP 445
            +P
Sbjct: 684 PVP 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429092|ref|XP_002269076.1| PREDICTED: uncharacterized protein LOC100253276 isoform 1 [Vitis vinifera] gi|359475510|ref|XP_003631693.1| PREDICTED: uncharacterized protein LOC100253276 isoform 2 [Vitis vinifera] gi|147838852|emb|CAN72363.1| hypothetical protein VITISV_011058 [Vitis vinifera]

 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 204/481 (42%), Gaps = 50/481 (10%)

Query: 10  CECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPR-LDHAFHPAS-KWISAMFLHRWKE 67
            +C+   C W++ A++      F I      H C +   +  H AS  WI +    R ++
Sbjct: 45  AKCATEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKNAQNGHHQASVDWIVSFIEERLRD 104

Query: 68  QPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDR 127
             +    ++ ++I   YGI  P  + + A  R    +    ++GY +L  + EE++R + 
Sbjct: 105 NINYKPKDILHDIHKQYGITIPYKQAWRAKERGLAAIYGSSEEGYCLLPAYCEEIKRANP 164

Query: 128 DNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAA 187
            ++  V T    S  + RF+R+FV    + Y F   C  I+ + G ++ +     +L A 
Sbjct: 165 GSVAEVFT----SGADNRFQRLFVSFYASIYGFLNGCLPIVGLGGIQLKSKYLGTLLSAT 220

Query: 188 GLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRL--ENGKGLCILGDGDNGVEYAVE 245
             D + G+ P+AF  V  E+ +SW++FL  +  AL +  EN   L  L DG  G++ AV+
Sbjct: 221 SFDADGGLFPLAFGVVDAENDESWMWFLSELRKALEMNTENVPQLTFLSDGQKGIQDAVK 280

Query: 246 EFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSA------------TSQECHD 293
              P + +  C   +   + + F  + + HL W A   T+              S E   
Sbjct: 281 RKFPTSSHAFCMRHLSESIGKEFKNSRLVHLLWKAAYATTTIAFKEKMAEIEEVSSEAAK 340

Query: 294 WLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYL----EMSITRRFTAIARSTA 349
           W++     RWAL       +   ++  I E     F+ ++    E+ I +    I     
Sbjct: 341 WIQQFPTSRWALVYF-EGTRYGHLSSNIEE-----FNKWILEARELPIIQVIEQIHSKLM 394

Query: 350 EIFERRRMVVWKWYREKVTPTV-------------------QDIIHDRCSDGRRFILNMD 390
             FE RR+    W+   + P+                     ++  +  S  R  I+N+ 
Sbjct: 395 AEFEERRLKSNSWF-SVLAPSADKRMMEAIGRASTYQVLRSDEVEFEVLSAERSDIVNIG 453

Query: 391 AMSCSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAW 450
              CSC  WQ+ GIPC+HA   +   R+ +  + +   +V +Y + Y+  +  +P +  W
Sbjct: 454 TQCCSCRDWQLYGIPCSHAVAALLSCRKDVYAFTEKCFTVASYRAAYSEEIRPIPCKIEW 513

Query: 451 K 451
           +
Sbjct: 514 R 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77556042|gb|ABA98838.1| transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group] gi|108708684|gb|ABF96479.1| transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 204/469 (43%), Gaps = 45/469 (9%)

Query: 10  CECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLDH--AFHPASKWISAMFLHRWKE 67
           C+  +  C W+  A    +  G  +    P HNC  ++   A    + W++   +   KE
Sbjct: 330 CKKKEQGCKWRFHASTSKKYYGCKVKVNRPAHNCCSINKTGAAMATNSWVAERVIDWLKE 389

Query: 68  QPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDR 127
            P++  + ++ ++E  Y       KVF    +A + +   ++D +A+L  F+EE+ +   
Sbjct: 390 TPTLGASALKVKLEKKYKFTIGYDKVFRGKEKALEKIFGKWEDSFALLPTFREELLKAQP 449

Query: 128 DNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAA 187
            +IV ++TE HE  ++  F+R+F+        F   CR  +A+D   +       +  A 
Sbjct: 450 GSIVDIDTEIHE--DQVCFRRLFIALKPCIDGFLQGCRPYIAMDSTHLTGKHRGQLAAAV 507

Query: 188 GLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEF 247
            +DGNN + PVAF  ++ E  +SW +F++N+ +A  + N  GL I  D   G+E AV + 
Sbjct: 508 AIDGNNWLFPVAFGVIEAETTESWTWFVQNLKNA--IGNPPGLAISTDAGKGLERAVSDV 565

Query: 248 LPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQECH-DWLKNSNWERWALF 306
            P A +R+C   ++    +++         W A +  ++     H + +   + E  A  
Sbjct: 566 YPTAEHRECMRHLWKNFKKQYHGPLFGENMWPAAKCYTSQQYNYHMNKIAEKSPEAIAYL 625

Query: 307 CMPH---WVKCTCVTLT----ITEKLRTSFDHYL----EMSITRRFTAIARSTAEIFERR 355
              H   W +     L+    I   L  SF++++    E+ I   F  + +   + F  R
Sbjct: 626 KTNHPFFWSRSKFSELSKVDYINNNLSESFNNWVMKIKELHIVDLFDTLRQMIIDKFHLR 685

Query: 356 RMVVWKWYREKVTPTV-------------QDIIHDRCSDGR------------RFILNMD 390
             +  K    ++ P++              +++   C D              R  +N+ 
Sbjct: 686 SQLASK-MEGRIIPSIIKTLNEQSKNLKDYNVVRSNCDDLAEVSVVSNKGVVWRHAVNLK 744

Query: 391 AMSCSCGLWQISGIPCAHACRGIKYMR-RKIEDYVDSMMSVQNYMSTYA 438
           A +CSC  WQ+SG PC HA   I  +R   +  YVD   SVQ    TYA
Sbjct: 745 AHTCSCRAWQVSGKPCNHALAFIGSLRFPDMNGYVDECYSVQRLRQTYA 793

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29788811|gb|AAP03357.1| putative mutator-like transposase [Oryza sativa Japonica Group]

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 204/469 (43%), Gaps = 45/469 (9%)

Query: 10  CECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLDH--AFHPASKWISAMFLHRWKE 67
           C+  +  C W+  A    +  G  +    P HNC  ++   A    + W++   +   KE
Sbjct: 342 CKKKEQGCKWRFHASTSKKYYGCKVKVNRPAHNCCSINKTGAAMATNSWVAERVIDWLKE 401

Query: 68  QPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDR 127
            P++  + ++ ++E  Y       KVF    +A + +   ++D +A+L  F+EE+ +   
Sbjct: 402 TPTLGASALKVKLEKKYKFTIGYDKVFRGKEKALEKIFGKWEDSFALLPTFREELLKAQP 461

Query: 128 DNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAA 187
            +IV ++TE HE  ++  F+R+F+        F   CR  +A+D   +       +  A 
Sbjct: 462 GSIVDIDTEIHE--DQVCFRRLFIALKPCIDGFLQGCRPYIAMDSTHLTGKHRGQLAAAV 519

Query: 188 GLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEF 247
            +DGNN + PVAF  ++ E  +SW +F++N+ +A  + N  GL I  D   G+E AV + 
Sbjct: 520 AIDGNNWLFPVAFGVIEAETTESWTWFVQNLKNA--IGNPPGLAISTDAGKGLERAVSDV 577

Query: 248 LPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQECH-DWLKNSNWERWALF 306
            P A +R+C   ++    +++         W A +  ++     H + +   + E  A  
Sbjct: 578 YPTAEHRECMRHLWKNFKKQYHGPLFGENMWPAAKCYTSQQYNYHMNKIAEKSPEAIAYL 637

Query: 307 CMPH---WVKCTCVTLT----ITEKLRTSFDHYL----EMSITRRFTAIARSTAEIFERR 355
              H   W +     L+    I   L  SF++++    E+ I   F  + +   + F  R
Sbjct: 638 KTNHPFFWSRSKFSELSKVDYINNNLSESFNNWVMKIKELHIVDLFDTLRQMIIDKFHLR 697

Query: 356 RMVVWKWYREKVTPTV-------------QDIIHDRCSDGR------------RFILNMD 390
             +  K    ++ P++              +++   C D              R  +N+ 
Sbjct: 698 SQLASK-MEGRIIPSIIKTLNEQSKNLKDYNVVRSNCDDLAEVSVVSNKGVVWRHAVNLK 756

Query: 391 AMSCSCGLWQISGIPCAHACRGIKYMR-RKIEDYVDSMMSVQNYMSTYA 438
           A +CSC  WQ+SG PC HA   I  +R   +  YVD   SVQ    TYA
Sbjct: 757 AHTCSCRAWQVSGKPCNHALAFIGSLRFPDMNGYVDECYSVQRLRQTYA 805

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527977|ref|XP_003532582.1| PREDICTED: uncharacterized protein LOC100775909 [Glycine max]

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 199/475 (41%), Gaps = 41/475 (8%)

Query: 10  CECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPR-LDHAFHPAS-KWISAMFLHRWKE 67
            +C+   C W++ A++      F I      H C R  ++  H AS  WI +    R ++
Sbjct: 45  AKCASDGCPWRIRAVKLPNAPTFTIRSIDGTHTCGRNANNGHHQASVDWIVSFIEERLRD 104

Query: 68  QPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDR 127
             +    ++ ++I   YGI  P  + + A  R    +    ++GY +L  + E++++ + 
Sbjct: 105 NINYKPKDILHDIHKQYGITIPYKQAWRAKERGLAAIYGSSEEGYYLLPSYCEQIKKTNP 164

Query: 128 DNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAA 187
            ++  V T       + RF+R FV    +   F   C  I+ + G ++ +   S +L A 
Sbjct: 165 GSVAEVFTGA-----DNRFQRFFVSFYASINGFVNGCLPIVGLGGIQLKSKYLSTLLSAT 219

Query: 188 GLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRL--ENGKGLCILGDGDNGVEYAVE 245
             D + G+ P+AF  V VE+ DSW +FL  ++  L +  E       L DG  G+  AV 
Sbjct: 220 SFDADGGLFPLAFGVVDVENDDSWTWFLSELHKVLEVNTECMPKFIFLSDGQKGITDAVR 279

Query: 246 EFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSA------------TSQECHD 293
              P + +  C   +   + + F  + + HL W A   T+              S E   
Sbjct: 280 RKFPSSSHALCMRHLTESIGKEFKNSRLVHLLWKASHATTTIAFKEKMGEIEEVSPEAAK 339

Query: 294 WLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFE 353
           WL+  +  +WAL       +   ++  I E  +   D   E+ I +    I       F+
Sbjct: 340 WLQQFHPSQWALVHFK-GTRFGHLSSNIEEFNKWILD-TRELPIIQVIERIHSKLKTEFD 397

Query: 354 RRRMVVWKW------YREKV-------TPTVQDIIHDRC-----SDGRRFILNMDAMSCS 395
            RR+    W        EK+         T Q +  D       S  R  I+N+ + SCS
Sbjct: 398 DRRLKSSSWCSVLAPSAEKLMTEAIDHASTYQVLRSDEVEFEVLSADRSDIVNIGSHSCS 457

Query: 396 CGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAW 450
           C  WQ++GIPC+HA   +   R+ +  +     +  +Y +TYA  +  +P +  W
Sbjct: 458 CRDWQLNGIPCSHATAALISCRKDVYAFTQKCFTAASYRNTYAEAIHHIPGKLEW 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520056|ref|XP_004167050.1| PREDICTED: uncharacterized LOC101204073 [Cucumis sativus]

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 202/475 (42%), Gaps = 39/475 (8%)

Query: 10  CECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPR-LDHAFHPAS-KWISAMFLHRWKE 67
            +C++  C W++ A++      F I      H C +   +  H AS  WI +    R + 
Sbjct: 45  AKCAEEGCPWRIRAVKLPNSPIFTIRSLQGTHTCGQNAQNGHHQASIDWIVSFIEERLRN 104

Query: 68  QPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDR 127
             +    ++ ++I   YGI  P  + + A  R    +    ++GY +L  + E++++ + 
Sbjct: 105 NINYKPKDILHDIHKQYGITIPYKQAWRAKERGLATIFGSSEEGYGLLPSYCEQIKKANP 164

Query: 128 DNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAA 187
            ++  V T    +  +  F+R+FV    + Y F   C  ++ + G E+ +     +L A 
Sbjct: 165 GSVAEVFT----TGSDNHFQRLFVSFYASIYGFLNGCFPVIGLGGIELKSKYLGTLLSAT 220

Query: 188 GLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLE--NGKGLCILGDGDNGVEYAVE 245
             D + G+ PVAF  V  E+ +SW++FL  +++AL++   N   L  L DG NG+  A+ 
Sbjct: 221 SYDADGGMFPVAFGVVDAENEESWLWFLSELHNALKMNAWNKFHLTFLSDGQNGILDALR 280

Query: 246 EFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSA--CRTTSATSQECHDWLKNS-NWER 302
              P + +  C   +   + + F  + +  L W A   +TT A  +   D  + S    +
Sbjct: 281 RKFPNSSHALCMRYLSENIGKEFKNSRLVSLVWKAAYAKTTIAFKERMSDIEEISPEAAK 340

Query: 303 WALFCMPHWVKCTCVTLTITEKLRTSFDHYL-------EMSITRRFTAIARSTAEIFERR 355
           W     PHW        T    L ++ + +        E+ I +    I       FE R
Sbjct: 341 WIQQFPPHWA-LVYFEGTRYGHLSSNLEEFTKWILDARELPIIQVIERIHSKLMAEFEER 399

Query: 356 RMVVWKWYREKVTPTVQ-------------------DIIHDRCSDGRRFILNMDAMSCSC 396
           R     W+   +TP+ +                   ++  +  S  R +I+N+    C C
Sbjct: 400 RARSTSWF-SFLTPSAEKRIVEAIKLASSYQVLQSDEVEFEVLSADRSYIVNIGKRCCLC 458

Query: 397 GLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAWK 451
             WQ+ GIPC+HA   I   R+ +  +++   +V  Y   Y   +  +P++  WK
Sbjct: 459 RDWQLYGIPCSHAVAAIASCRKDVHAFMEKCFTVSGYREAYEKSVHPIPRKLEWK 513

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548025|ref|XP_003542404.1| PREDICTED: uncharacterized protein LOC100776940 [Glycine max]

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/483 (22%), Positives = 206/483 (42%), Gaps = 48/483 (9%)

Query: 2   ENRSHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPR--LDHAFHPASKWISA 59
           +N SH V+ +C    C W+V A +    +   I +    H C    +   +     W+ +
Sbjct: 213 KNDSHRVTVKCKSQGCPWRVYASKLSTTQLICIKKMHCNHTCEGSVVKAGYRATRGWVGS 272

Query: 60  MFLHRWKEQPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFK 119
           +   + K+ P+    ++ ++I+  YGI+    + + A   A++ L   Y + Y  L  F 
Sbjct: 273 IIKEKLKDSPNYKPKDIADDIKREYGIQLNYSQAWRAKEIAREQLQGSYKEAYTQLPLFC 332

Query: 120 EEMERIDRDNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPC 179
           E+++  +  +       T  ++E+  F R+FV    +   F++ CR ++ +D   +N+  
Sbjct: 333 EKIKETNPGSFA-----TFTTKEDSSFHRLFVAFHASISGFQLGCRPLIFLDRTPLNSKY 387

Query: 180 NSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNG 239
              +L A  +DGN+GI PVAF  V  E  D+W +FL+ +   L     + +  + D  NG
Sbjct: 388 QGELLAAISVDGNDGIFPVAFAVVDTETEDNWHWFLQELK--LATSTSEQITFVADFQNG 445

Query: 240 VEYAVEEFLPRAVYRQCCHRI-----------FNEMVRRF--------PTAPVQHLFWSA 280
           ++ ++ +   +  +  C   +           F+   RRF          AP    F  +
Sbjct: 446 LKKSLSDVFEKCYHSYCLRHLAEKLNKDLKGQFSHEARRFMVNDFYAAAYAPKLETFERS 505

Query: 281 CRTTSATSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRR 340
                  S E +DW+  S  E WA     +  +   ++    ++  +      E+ IT+ 
Sbjct: 506 IENIKGISPEAYDWVIQSEPEHWA-NAFFNGARYNLLSSNFGQQFYSWVSEAHELPITQM 564

Query: 341 FTAIARSTAEIFERRRMVVWKWYREKVTPTVQDIIHDR----------CSDGRRF----- 385
             A+     E    R++   +W   K+TP+ ++++              S G  F     
Sbjct: 565 IDALRGKMMETIYTRQVESNQWMT-KLTPSKEELLQKERLVAHSLQVLFSQGSTFEVRGE 623

Query: 386 ---ILNMDAMSCSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMM 442
              I+++D   CSC  WQ++G+PC HA    + + R   DY     +V+NY  TYA  + 
Sbjct: 624 SVDIVDIDNWDCSCKGWQLTGVPCCHAIAVFECVGRSPYDYCSRYFTVENYRLTYAESIH 683

Query: 443 QLP 445
            +P
Sbjct: 684 PVP 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105815|ref|XP_002313941.1| predicted protein [Populus trichocarpa] gi|222850349|gb|EEE87896.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 197/477 (41%), Gaps = 42/477 (8%)

Query: 10  CECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPR-LDHAFHPAS-KWISAMFLHRWKE 67
            +C+   C W++ A++      F +      H C R   +  H AS  WI +    R + 
Sbjct: 45  AKCASEGCPWRIRAVKLPNVPTFTVRSLEGTHTCGRNAQNGHHQASVDWIVSFIEERLRN 104

Query: 68  QPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDR 127
             +    ++ ++I   YGI  P  + + A  R    +    ++GY +L  + E+++R + 
Sbjct: 105 NTNYKPKDILHDIHQQYGITIPYKQAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNP 164

Query: 128 DNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAA 187
            ++  V T    +  + RF R+F+    +   F   C  I+ + G ++ +     +L A 
Sbjct: 165 GSVAEVFT----TGADNRFHRLFISFFGSINGFLNGCLPIVGLGGIQLKSKYLGTLLSAT 220

Query: 188 GLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRL--ENGKGLCILGDGDNGVEYAVE 245
             D + G+ P+AF  V VE+ +SW++FL  +  AL +  EN   L  L DG  G+  AV 
Sbjct: 221 SFDADGGLFPLAFGVVDVENDESWMWFLSELQKALEMNTENMPRLTFLCDGQKGIVDAVR 280

Query: 246 EFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTT------------SATSQECHD 293
              P + +  C   +   + + F  + + HL W A   T            S  S     
Sbjct: 281 RKFPSSSHAFCLRHLSESIGKEFKNSRLVHLLWKAAYATTTIHFKEKMLEISEVSSAAAK 340

Query: 294 WLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFE 353
           WL+     RWAL       +   ++  I E  R   +   E+ I +    I       F+
Sbjct: 341 WLQQFPPSRWALVYF-EGTRYGHLSSNIDEFNRWILEAR-ELPIIQVIERIHSKLMAEFQ 398

Query: 354 RRRMVVWKWYREKVTPTVQ-------------------DIIHDRCSDGRRFILNMDAMSC 394
            R+M    W+   + P+ +                   ++  +  S  R  I+N+   SC
Sbjct: 399 DRQMKSNSWF-SVLAPSAEKRMIEAINHASAYQVLRSDEVEFEVLSADRSDIVNIGTHSC 457

Query: 395 SCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAWK 451
           SC  WQ+ GIPC+HA   +   R+ +  + +   +V  Y   YA  +  +P+   W+
Sbjct: 458 SCRGWQLYGIPCSHAVAALVSCRKDVYAFTEKCFTVAGYREAYAETIHPIPERIEWR 514

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459624|ref|XP_004147546.1| PREDICTED: uncharacterized protein LOC101204073 [Cucumis sativus]

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 201/475 (42%), Gaps = 39/475 (8%)

Query: 10  CECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPR-LDHAFHPAS-KWISAMFLHRWKE 67
            +C++  C W++ A++      F I      H C +   +  H AS  WI +    R + 
Sbjct: 45  AKCAEEGCPWRIRAVKLPNSPIFTIRSLQGTHTCGQNAQNGHHQASIDWIVSFIEERLRN 104

Query: 68  QPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDR 127
             +    ++ ++I   YGI  P  + + A  R    +    ++GY +L  + E++++ + 
Sbjct: 105 NINYKPKDILHDIHKQYGITIPYKQAWRAKERGLATIFGSSEEGYGLLPSYCEQIKKANP 164

Query: 128 DNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAA 187
            ++  V T    +  +  F+R+FV    + Y F   C  ++ + G E+ +     +L A 
Sbjct: 165 GSVAEVFT----TGSDNHFQRLFVSFYASIYGFLNGCFPVIGLGGIELKSKYLGTLLSAT 220

Query: 188 GLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLE--NGKGLCILGDGDNGVEYAVE 245
             D + G+ PVAF  V  E+ +SW++FL  +++AL++   N   L  L DG  G+  A+ 
Sbjct: 221 SYDADGGMFPVAFGVVDAENEESWLWFLSELHNALKMNAWNKFHLTFLSDGQKGILDALR 280

Query: 246 EFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSA--CRTTSATSQECHDWLKNS-NWER 302
              P + +  C   +   + + F  + +  L W A   +TT A  +   D  + S    +
Sbjct: 281 RKFPNSSHALCMRYLSENIGKEFKNSRLVSLVWKAAYAKTTIAFKERMSDIEEISPEAAK 340

Query: 303 WALFCMPHWVKCTCVTLTITEKLRTSFDHYL-------EMSITRRFTAIARSTAEIFERR 355
           W     PHW        T    L ++ + +        E+ I +    I       FE R
Sbjct: 341 WIQQFPPHWA-LVYFEGTRYGHLSSNLEEFTKWILDARELPIIQVIERIHSKLMAEFEER 399

Query: 356 RMVVWKWYREKVTPTVQ-------------------DIIHDRCSDGRRFILNMDAMSCSC 396
           R     W+   +TP+ +                   ++  +  S  R +I+N+    C C
Sbjct: 400 RARSTSWF-SFLTPSAEKRIVEAIKLASSYQVLQSDEVEFEVLSADRSYIVNIGKRCCLC 458

Query: 397 GLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAWK 451
             WQ+ GIPC+HA   I   R+ +  +++   +V  Y   Y   +  +P++  WK
Sbjct: 459 RDWQLYGIPCSHAVAAIASCRKDVHAFMEKCFTVSGYREAYEKSVHPIPRKLEWK 513

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505949|ref|XP_003521751.1| PREDICTED: uncharacterized protein LOC100795835 [Glycine max]

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/478 (22%), Positives = 199/478 (41%), Gaps = 41/478 (8%)

Query: 9   SCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLDHAFHPAS--KWISAMFLHRWK 66
           + +C    C W++ A +      F I      H C  + H  H  +  +W++     R K
Sbjct: 216 TAKCRSEGCPWRIHAAKLPGVPTFTIRTVHESHTCGGISHLGHQQASVQWVATSVEQRLK 275

Query: 67  EQPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERID 126
           E P     E+  EI  ++GI     + +    R    +   +++GY +L Q+ E+++R +
Sbjct: 276 ENPDCKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTN 335

Query: 127 RDNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVA 186
             +I  V    + +  +  F+R+F+    + Y F   CR +L +D   + +     +L+A
Sbjct: 336 PGSIASV----YANPTDNCFRRLFISFQASIYGFLNACRPLLELDRIYLKSKYLGTLLLA 391

Query: 187 AGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRL--ENGKGLCILGDGDNGVEYAV 244
            G DG+  + P+AF  V  E+ D+W++FL  +++ L +  EN   L IL D   G+   V
Sbjct: 392 TGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGV 451

Query: 245 EEFLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTS------------ATSQECH 292
           E   P A +  C   + +   + F    + +L W+A +  +              SQ+  
Sbjct: 452 EANFPTAFHGFCMRHLIDSFRKEFNNTMLVNLLWNAAQVLTILEFESKVLEIEEISQDAA 511

Query: 293 DWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIF 352
            W++      WA            +T  I E L T       + I +    I R     F
Sbjct: 512 YWIRRVPPHLWATAYF-EGQSFFHLTANIVESLNTWILDASGLPIIQMMECIRRQLMIWF 570

Query: 353 ERRRMVVWKWYREKVTPTVQDIIHD-----------RCSDGRRFILNMDAMS-------- 393
             RR    +W    + P+ +  + +           R +D    +++ +  +        
Sbjct: 571 NERRETSMQW-PSILVPSAERHVAEALDRARTHQVLRATDAEFEVISHEGTNTVDIRTRC 629

Query: 394 CSCGLWQISGIPCAHACRGIKYMRRKIEDYVDSMMSVQNYMSTYAPGMMQLPQEYAWK 451
           C C  WQ+ G+PCAHA   +  +R+ +  + +S  +V  Y  TY+  +  +P +  WK
Sbjct: 630 CQCRGWQLYGLPCAHAVAALLSIRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWK 687

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.645	0.373	0.223	1.3e-16
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.645	0.407	0.211	1.9e-14
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.627	0.38	0.230	2.1e-13

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 72/322 (22%), Positives = 129/322 (40%)

Query:     2 ENRSHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNC-PRLDHAFHPASKWISAM 60
             E    +   EC    C W + A R      F IT+ S  H+C P  +H     ++ I   
Sbjct:   211 ETEKDVYVVECERWHCKWSICASRREEDGLFEITECSGPHDCYP--EHLNDFDAECIPFQ 268

Query:    61 FLHRWKEQPSISTTEVRNEIESMYGIK-------CPEWKVFCAANRA-KQILGLDYDDGY 112
                  + QP++ST E+    E  +G         C E  V  A  +A K+  G D+D  +
Sbjct:   269 IERVVRVQPTLSTAELDKWWEKKFGFALDQVVEHCSEGLVEDAKVKAIKRFFG-DWDQSF 327

Query:   113 AMLHQFKEEMERIDRDNIVLVXXXXXXXXXX---XXFKRVFVCCARTSYAFKVHCRGILA 169
              ++ +    M  +   N +LV               F+ +F   +++   F+ HCR ++ 
Sbjct:   328 RLIPKL---MSVLHSSNGLLVDWQYDSLTHDPEHASFRGLFWAFSQSIQGFQ-HCRPLIV 383

Query:   170 VDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKG 229
             VD   +       +++A+  D  N   P+AF   +   +DSW +FL  I    ++   +G
Sbjct:   384 VDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKEVSVDSWRWFLTRIRE--KVTQRQG 441

Query:   230 LCILGDGDNGVEYAVEE-----FLPRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTT 284
             +C++   D  +   + E       P A +R C + + +++    P       F      +
Sbjct:   442 ICLISSPDPDILAVINEPGSQWKEPWAYHRFCLYHLCSKLCSVSPGFDYNMHFLVDEAGS 501

Query:   285 SATSQECHDWLKN---SNWERW 303
             S+  +E   ++K     N E W
Sbjct:   502 SSQKEEFDSYMKEIKERNPEAW 523

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 66/312 (21%), Positives = 128/312 (41%)

Query:     2 ENRSHIVSCECSDLSCDWQVTAIRDVRGKGFV-ITQFSPKHNCPRLDHAFHPASKWISAM 60
             E    + + EC    C W + A R +   G V IT+++  H C   ++     S++ +  
Sbjct:   216 ETEKEMYTFECVRWKCKWSLRAAR-MEEHGLVEITKYTGPHTCSH-EYPNDFESEFAADE 273

Query:    61 FLHRWKEQPSISTTEVRNEIESMYGIKCPEWKVFCAANRA-KQILGLDYDDGYAMLHQFK 119
                  + QP++S  E++   +   G +    K+        K++ G D D  + ++ +  
Sbjct:   274 IERVVRIQPTLSIAELKKWWKEKTGYELQTSKMRDGKLEVIKRVFG-DEDQSFRVMPKL- 331

Query:   120 EEMERIDRDNIVLVXXXXXXXXX--XXXFKRVFVCCARTSYAFKVHCRGILAVDGWEINN 177
               +      N +LV              F+ VF   +++   F+ HCR ++ VD   +N 
Sbjct:   332 --ISAFHSSNGLLVDWQYDLFPNPDFASFRGVFWSFSQSIEGFQ-HCRPLIVVDTKSLNG 388

Query:   178 PCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGD 237
                  +++A+G+D  N   P+AF   +    DSW +F   I    ++   K LC++    
Sbjct:   389 KYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIRE--KVTQRKDLCLISSPL 446

Query:   238 NGVEYAVEE--FL---PRAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATSQECH 292
               +   V E   L   P A ++ C + + ++ +  F    ++ L   A  T      + +
Sbjct:   447 RDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSY 506

Query:   293 -DWLKNSNWERW 303
              + +K  N E W
Sbjct:   507 MNDIKEKNPEAW 518

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 73/317 (23%), Positives = 127/317 (40%)

Query:    11 ECSDLSCDWQVTAIRDVRGKGFV-ITQFSPKHNC-PRLDHAFHPASKWISAMFLHRWKEQ 68
             EC    C W + A R ++  G V I +++  H C P +   F   S++ +       +  
Sbjct:   232 ECIRWKCKWSLGAAR-MKKHGLVEIIKYTGPHTCHPIVPEDFK--SEFETDEIERAVRYM 288

Query:    69 PSISTTEVRNEIESMYGIKCPEWKVFCAANRA-KQILGLDYDDGYAMLHQFKEEMERIDR 127
             P+ + +E++   +   G +     V  A  +A K++ G D+D  +     F + M  +  
Sbjct:   289 PTQTISELKKWWKKKIGYELETSDVRLAKEKAIKRVFG-DWDQSF---EDFPKLMSALCS 344

Query:   128 DNIVLVXXXXXXXXX--XXXFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLV 185
              N +LV              F  VF    ++   F+ HCR ++ VD   +N      +++
Sbjct:   345 SNGLLVDWKYDLFPNPNFASFCGVFWAFPQSIEGFQ-HCRPLIVVDTKNLNCEYQLKLMI 403

Query:   186 AAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVE 245
             A+G+D  N   P+AF   +    D W +FL  I    ++   KGLC++      +   V 
Sbjct:   404 ASGVDAANKYFPLAFAVTKEVSTDIWRWFLTGIRE--KVTQRKGLCLISSPHPDIIAVVN 461

Query:   246 EF-----LPRAVYRQCCHRIFNEMVRRFPT----APVQHL--------FWSACRTTSATS 288
             E       P A +R   +  +++  R FP+    A ++          F S        +
Sbjct:   462 ESGSQWQEPWAYHRFSLNHFYSQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKN 521

Query:   289 QECHDWLKNSNWERWAL 305
              E   WL      RWAL
Sbjct:   522 PEARKWLDQFPQNRWAL 538

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: OsJ_06504 transposon protein, putative, unclassified (1068 aa) (Oryza sativa Japonica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	454
pfam10551	88	pfam10551, MULE, MULE transposase domain	4e-08
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	3e-04

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 180 NSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNG 239
            +    A G+D +    P+AF  V  E  +SW +FL+ +  AL       L I+ DGD G
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGR--PPLTIISDGDKG 62

Query: 240 VEYAVEEFLPRAVYRQC 256
           ++ A++E  P A +R C
Sbjct: 63  LKKAIKEVFPNARHRLC 79

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 11/17 (64%), Positives = 14/17 (82%)

Query: 393 SCSCGLWQISGIPCAHA 409
           +CSC  +Q+SGIPC HA
Sbjct: 2   TCSCRKFQLSGIPCRHA 18

Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	454
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.89
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.88
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.68
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	99.1
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	98.21
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.21
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	97.52
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	97.26
PF13610	140	DDE_Tnp_IS240: DDE domain	96.88
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	96.08
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	95.87
PHA02517	277	putative transposase OrfB; Reviewed	95.78
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	95.74
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	95.49
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	93.36
COG3316	215	Transposase and inactivated derivatives [DNA repli	91.99
PRK09409	301	IS2 transposase TnpB; Reviewed	89.9
PF13565	77	HTH_32: Homeodomain-like domain	89.63
PRK14702	262	insertion element IS2 transposase InsD; Provisiona	89.44
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	88.08

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=3.9e-64  Score=531.39  Aligned_cols=398  Identities=14%  Similarity=0.224  Sum_probs=312.5

Q ss_pred             eccCCCccEEEEEEeCCCCeEEEEEecCCcccCCCCCCCc-cchHHHHHHHhhhhccCCCCCHHHHHHHHHHHhCCccCH
Q 043258           12 CSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLDHAFH-PASKWISAMFLHRWKEQPSISTTEVRNEIESMYGIKCPE   90 (454)
Q Consensus        12 C~~~gC~~~v~~~~~~~~~~~~v~~~~~~Hnc~~~~~~~~-~~s~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~~s~   90 (454)
                      |+.+||+++|++++. .++.|.|+.++.+|||++.+.... ..++.+-..+...+....++..      ++..     ..
T Consensus       156 ~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~~~~~~~~~~~v~~------~~~d-----~~  223 (846)
T PLN03097        156 CAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVG------LKND-----SK  223 (846)
T ss_pred             ccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCccccchhhhhhHHHHHhhhhccccccc------cchh-----hc
Confidence            566799999999875 447899999999999999974321 1111111111111111000000      0000     00


Q ss_pred             HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhCCCcEEEEEecccccccccceeEEEEeecchHHHHHhhcccEEEE
Q 043258           91 WKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAV  170 (454)
Q Consensus        91 ~~~~rak~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~vi~~  170 (454)
                      ....+.+.+.   +   ...+.+.|.+|++.++.+||+|+|++++     |++++++++||+++.++.+|. +|+|||.+
T Consensus       224 ~~~~~~r~~~---~---~~gD~~~ll~yf~~~q~~nP~Ffy~~ql-----De~~~l~niFWaD~~sr~~Y~-~FGDvV~f  291 (846)
T PLN03097        224 SSFDKGRNLG---L---EAGDTKILLDFFTQMQNMNSNFFYAVDL-----GEDQRLKNLFWVDAKSRHDYG-NFSDVVSF  291 (846)
T ss_pred             chhhHHHhhh---c---ccchHHHHHHHHHHHHhhCCCceEEEEE-----ccCCCeeeEEeccHHHHHHHH-hcCCEEEE
Confidence            0111111111   1   1235678999999999999999999998     889999999999999999997 59999999


Q ss_pred             eCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHHHHHhhhcCC
Q 043258          171 DGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLPR  250 (454)
Q Consensus       171 D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai~~vfP~  250 (454)
                      |+||++|+|++||++++|+|+|+++++||+||+.+|+.|+|.|+|++|+++|  ++..|.+||||++.+|.+||.+|||+
T Consensus       292 DTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM--~gk~P~tIiTDqd~am~~AI~~VfP~  369 (846)
T PLN03097        292 DTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAM--GGQAPKVIITDQDKAMKSVISEVFPN  369 (846)
T ss_pred             eceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHh--CCCCCceEEecCCHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999999999  58999999999999999999999999


Q ss_pred             ccccccHHHHHHhHHhhCC-----CchhHHHHHHHhhhhcc--------------CCHHHHHHhhhc--CcccceeeecC
Q 043258          251 AVYRQCCHRIFNEMVRRFP-----TAPVQHLFWSACRTTSA--------------TSQECHDWLKNS--NWERWALFCMP  309 (454)
Q Consensus       251 a~~~~C~~Hi~~n~~~~~~-----~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~--~~~~W~~~~~~  309 (454)
                      +.|++|.|||++|+.+++.     .+.+...|+++++.+..              ++...++||+.+  .|++|+++|++
T Consensus       370 t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k  449 (846)
T PLN03097        370 AHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMR  449 (846)
T ss_pred             ceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhc
Confidence            9999999999999999885     34889999999886543              677888999998  89999999999


Q ss_pred             CcceeccccCChhHHHhhhhhh--hccccHHHHHHHHHHHHHHHHHHHHHh-Hh---------------hhcccccChhH
Q 043258          310 HWVKCTCVTLTITEKLRTSFDH--YLEMSITRRFTAIARSTAEIFERRRMV-VW---------------KWYREKVTPTV  371 (454)
Q Consensus       310 ~~~~~~~~Ttn~~Es~n~~lk~--~r~~pi~~~~~~i~~~~~~~~~~r~~~-~~---------------~~~~~~~tp~~  371 (454)
                      +.|..|+.||+++||+|+.|++  .+..+|..|++++...+..+.++..+. ..               +.....+||.+
T Consensus       450 ~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~i  529 (846)
T PLN03097        450 DAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAV  529 (846)
T ss_pred             ccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHHH
Confidence            9989999999999999999999  467889999998877665544433211 10               11113788888


Q ss_pred             HHHhhh------cc-------------------CCCceEEEEcc----cceeecCCcccCCCCchhHHHHHHHhcC--Ch
Q 043258          372 QDIIHD------RC-------------------SDGRRFILNMD----AMSCSCGLWQISGIPCAHACRGIKYMRR--KI  420 (454)
Q Consensus       372 ~~i~~~------~~-------------------~~~~~~~V~l~----~~~CsC~~~~~~giPC~H~lav~~~~~~--~~  420 (454)
                      ++.++.      .|                   .....|.|..+    +.+|+|++||..||||+|||+||...++  .|
T Consensus       530 F~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP  609 (846)
T PLN03097        530 FKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIP  609 (846)
T ss_pred             HHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCc
Confidence            774432      12                   11234556443    5799999999999999999999999998  59


Q ss_pred             hhhhhhhccHHHHHh
Q 043258          421 EDYVDSMMSVQNYMS  435 (454)
Q Consensus       421 ~~~v~~~~t~~~~~~  435 (454)
                      +.||.++||+++-..
T Consensus       610 ~~YILkRWTKdAK~~  624 (846)
T PLN03097        610 SQYILKRWTKDAKSR  624 (846)
T ss_pred             hhhhhhhchhhhhhc
Confidence            999999999998754

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.89  E-value=8.5e-24  Score=211.24  Aligned_cols=236  Identities=16%  Similarity=0.209  Sum_probs=184.1

Q ss_pred             HHHHhhhhcc--CCCCCHHHHHHHHHHHhC-CccCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 043258           58 SAMFLHRWKE--QPSISTTEVRNEIESMYG-IKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVE  134 (454)
Q Consensus        58 ~~~~~~~~~~--~~~~~~~~i~~~l~~~~g-~~~s~~~~~rak~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~~~~~  134 (454)
                      .+.+.+.|..  -.+++.++|.+.++..+| ..+|.+++.|..+.+.+..           ..|    +...        
T Consensus       100 ~~~l~~~i~~ly~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~-----------~~w----~~R~--------  156 (381)
T PF00872_consen  100 EDSLEELIISLYLKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEV-----------EAW----RNRP--------  156 (381)
T ss_pred             hhhhhhhhhhhhccccccccccchhhhhhcccccCchhhhhhhhhhhhhH-----------HHH----hhhc--------
Confidence            4444444443  468999999999999999 8899999988766654422           111    1110        


Q ss_pred             ecccccccccceeEEEEeecchHHHHHhhc-ccEEEEeCeeecCCCCc-----ceEEEEEEeCCCCeEEEEEEEeecccc
Q 043258          135 TETHESREEERFKRVFVCCARTSYAFKVHC-RGILAVDGWEINNPCNS-----VMLVAAGLDGNNGILPVAFCEVQVEDL  208 (454)
Q Consensus       135 ~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~-~~vi~~D~t~~~~~y~~-----~l~~~~g~d~~~~~~~la~al~~~E~~  208 (454)
                             -                   ... .|+|++||+|.+.+.++     .+++++|+|.+|+..+||+.+.+.|+.
T Consensus       157 -------L-------------------~~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~  210 (381)
T PF00872_consen  157 -------L-------------------ESEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESA  210 (381)
T ss_pred             -------c-------------------ccccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCcc
Confidence                   0                   013 58899999999987544     589999999999999999999999999


Q ss_pred             hhHHHHHHHHHhhccccCCCcEEEEcCCcchHHHHHhhhcCCccccccHHHHHHhHHhhCCCc---hhHHHHHHHhhhhc
Q 043258          209 DSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPTA---PVQHLFWSACRTTS  285 (454)
Q Consensus       209 e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~~---~~~~~~~~~~~~~~  285 (454)
                      ++|.-||+.|++++   ...|..||+|+++||.+||.++||++.+|.|++|+++|+.++++.+   .+...++.+..+.+
T Consensus       211 ~~W~~~l~~L~~RG---l~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~  287 (381)
T PF00872_consen  211 ASWREFLQDLKERG---LKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPD  287 (381)
T ss_pred             CEeeecchhhhhcc---ccccceeeccccccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccc
Confidence            99999999999998   5679999999999999999999999999999999999999999755   56677776666554


Q ss_pred             c----------------CCHHHHHHhhhcCcccceeeecCCcceeccccCChhHHHhhhhhhh----ccccHHHHHHHHH
Q 043258          286 A----------------TSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDHY----LEMSITRRFTAIA  345 (454)
Q Consensus       286 ~----------------~~~~~~~~l~~~~~~~W~~~~~~~~~~~~~~Ttn~~Es~n~~lk~~----r~~pi~~~~~~i~  345 (454)
                      .                ..|.+.+++++...+.|+..-|+...+--+.|||.+||+|+.+|+.    +..|-.+.+..+.
T Consensus       288 ~e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irrr~~~~~~Fp~~~s~lr~~  367 (381)
T PF00872_consen  288 KEEAREALEEFAEKWEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRRRTKVVGIFPNEESALRLV  367 (381)
T ss_pred             cchhhhhhhhcccccccccchhhhhhhhccccccceeeecchhccccchhhhccccccchhhhccccccCCCHHHHHHHH
Confidence            3                5677777777766666666555655455678999999999999882    3466555444433

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.88  E-value=9.5e-23  Score=163.07  Aligned_cols=90  Identities=30%  Similarity=0.470  Sum_probs=85.7

Q ss_pred             CeeecCCCCcceEE---EEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHHHHHhhhc
Q 043258          172 GWEINNPCNSVMLV---AAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFL  248 (454)
Q Consensus       172 ~t~~~~~y~~~l~~---~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai~~vf  248 (454)
                      |||++|+| ++++.   ++|+|++|+.+|+||+++.+|+.++|.|||+.+++.++  .. |.+||||++.|+.+||+++|
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~--~~-p~~ii~D~~~~~~~Ai~~vf   76 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMP--QK-PKVIISDFDKALINAIKEVF   76 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccc--cC-ceeeeccccHHHHHHHHHHC
Confidence            79999999 98885   99999999999999999999999999999999999994  45 99999999999999999999


Q ss_pred             CCccccccHHHHHHhHH
Q 043258          249 PRAVYRQCCHRIFNEMV  265 (454)
Q Consensus       249 P~a~~~~C~~Hi~~n~~  265 (454)
                      |++.|++|.||+.+|++
T Consensus        77 P~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   77 PDARHQLCLFHILRNIK   93 (93)
T ss_pred             CCceEehhHHHHHHhhC
Confidence            99999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.68  E-value=1e-15  Score=150.17  Aligned_cols=223  Identities=15%  Similarity=0.180  Sum_probs=163.2

Q ss_pred             CCCCCHHHHHHHHHHHhCCccCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhCCCcEEEEEeccccccccccee
Q 043258           68 QPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVETETHESREEERFK  147 (454)
Q Consensus        68 ~~~~~~~~i~~~l~~~~g~~~s~~~~~rak~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~~~~~~~~~~~~~~~~f~  147 (454)
                      ..+++++++.+.++..++..++...+.+...++.+               .+.+++..-+                    
T Consensus        98 ~~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~e---------------~v~~~~~r~l--------------------  142 (379)
T COG3328          98 AKGVTTREIEALLEELYGHKVSPSVISVVTDRLDE---------------KVKAWQNRPL--------------------  142 (379)
T ss_pred             HcCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHHH---------------HHHHHHhccc--------------------
Confidence            56899999999999999988888877765554443               3333333211                    


Q ss_pred             EEEEeecchHHHHHhhcccEEEEeCeeecCC--CCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhcccc
Q 043258          148 RVFVCCARTSYAFKVHCRGILAVDGWEINNP--CNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLE  225 (454)
Q Consensus       148 ~~f~~~~~~~~~~~~~~~~vi~~D~t~~~~~--y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~  225 (454)
                                     +..+++++||+|++.+  -+..+++|+|++.+|+..++|+.+...|+ ..|.-||..|+..+   
T Consensus       143 ---------------~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rg---  203 (379)
T COG3328         143 ---------------GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRG---  203 (379)
T ss_pred             ---------------cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhcc---
Confidence                           1458899999999988  45579999999999999999999999999 99999999999997   


Q ss_pred             CCCcEEEEcCCcchHHHHHhhhcCCccccccHHHHHHhHHhhCCCch---hHHHHHHHhhhhcc----------------
Q 043258          226 NGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPTAP---VQHLFWSACRTTSA----------------  286 (454)
Q Consensus       226 ~~~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~~~---~~~~~~~~~~~~~~----------------  286 (454)
                      ......+++|+.+|+.+||.++||.+.+|+|..|+.+|+.++.+.++   ....+..+..+.+.                
T Consensus       204 l~~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~  283 (379)
T COG3328         204 LSDVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGK  283 (379)
T ss_pred             ccceeEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhh
Confidence            55666777899999999999999999999999999999999887662   22333332222221                


Q ss_pred             CCHHHHHHhhhcCcccceeeecCCcceeccccCChhHHHhhhhhh-h---ccccHHHHHHHH
Q 043258          287 TSQECHDWLKNSNWERWALFCMPHWVKCTCVTLTITEKLRTSFDH-Y---LEMSITRRFTAI  344 (454)
Q Consensus       287 ~~~~~~~~l~~~~~~~W~~~~~~~~~~~~~~Ttn~~Es~n~~lk~-~---r~~pi~~~~~~i  344 (454)
                      ..|....|+.+.-.+.|...-|+...+--+.|||..|++|+.++. .   ..+|-.+.+..+
T Consensus       284 ~yP~i~~~~~~~~~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~~~~~~~~fpn~~sv~k~  345 (379)
T COG3328         284 RYPAILKSWRNALEELLPFFAFPSEIRKIIYTTNAIESLNKLIRRRTKVVGIFPNEESVEKL  345 (379)
T ss_pred             hcchHHHHHHHHHHHhcccccCcHHHHhHhhcchHHHHHHHHHHHHHhhhccCCCHHHHHHH
Confidence            334444444444334443333333324457899999999998775 2   235655555443

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=99.10  E-value=4.4e-11  Score=71.94  Aligned_cols=27  Identities=41%  Similarity=0.785  Sum_probs=25.2

Q ss_pred             ceeecCCcccCCCCchhHHHHHHHhcC
Q 043258          392 MSCSCGLWQISGIPCAHACRGIKYMRR  418 (454)
Q Consensus       392 ~~CsC~~~~~~giPC~H~lav~~~~~~  418 (454)
                      .+|||++||..||||+|+|+|+...|+
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCC
Confidence            479999999999999999999998876

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=98.21  E-value=1.9e-06  Score=63.92  Aligned_cols=34  Identities=26%  Similarity=0.576  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEEeccCCCccEEEEEEeCCCCeEEE
Q 043258            1 MENRSHIVSCECSDLSCDWQVTAIRDVRGKGFVI   34 (454)
Q Consensus         1 ~ks~~~r~~~~C~~~gC~~~v~~~~~~~~~~~~v   34 (454)
                      .||+++|+.++|...||||+|+|++.++++.|+|
T Consensus        34 ~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen   34 KKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             eccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            4799999999999999999999999999999976

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.21  E-value=9.2e-07  Score=58.32  Aligned_cols=30  Identities=30%  Similarity=0.703  Sum_probs=26.4

Q ss_pred             EEcccceeecCCcccCCCCchhHHHHHHHh
Q 043258          387 LNMDAMSCSCGLWQISGIPCAHACRGIKYM  416 (454)
Q Consensus       387 V~l~~~~CsC~~~~~~giPC~H~lav~~~~  416 (454)
                      +++...+|||..|+..|.||+|++|++...
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~   39 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLAL   39 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhh
Confidence            345678999999999999999999998765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=97.52  E-value=0.00012  Score=57.65  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=29.7

Q ss_pred             cCCCccEEEEEEeCCCCeEEEEEecCCcccCCCC
Q 043258           14 DLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLD   47 (454)
Q Consensus        14 ~~gC~~~v~~~~~~~~~~~~v~~~~~~Hnc~~~~   47 (454)
                      .+||||+|.+.+.+ ++.|.|+.+..+|||++.+
T Consensus        59 ktgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P   91 (91)
T PF03101_consen   59 KTGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP   91 (91)
T ss_pred             ccCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence            36999999999887 7899999999999999864

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=97.26  E-value=0.00038  Score=55.64  Aligned_cols=31  Identities=19%  Similarity=0.423  Sum_probs=29.1

Q ss_pred             CCCccEEEEEEeCCCCeEEEEEecCCcccCC
Q 043258           15 LSCDWQVTAIRDVRGKGFVITQFSPKHNCPR   45 (454)
Q Consensus        15 ~gC~~~v~~~~~~~~~~~~v~~~~~~Hnc~~   45 (454)
                      .+|||+|+|......+.|.|..+++.|||++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            4899999999999999999999999999985

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=96.88  E-value=0.00053  Score=58.83  Aligned_cols=81  Identities=19%  Similarity=0.126  Sum_probs=68.9

Q ss_pred             ccEEEEeCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHHHHH
Q 043258          165 RGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAV  244 (454)
Q Consensus       165 ~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai  244 (454)
                      ++.+.+|-||.+.+-+ ..++..++|.+|+  +|.+-|-..-+...=..||..+.+..   ...|..|+||+.++...|+
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~---~~~p~~ivtDk~~aY~~A~   74 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRH---RGEPRVIVTDKLPAYPAAI   74 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceee---ccccceeecccCCccchhh
Confidence            3678999999876533 5667899999999  89999999999988889998888876   4789999999999999999


Q ss_pred             hhhcCCc
Q 043258          245 EEFLPRA  251 (454)
Q Consensus       245 ~~vfP~a  251 (454)
                      +++.|.-
T Consensus        75 ~~l~~~~   81 (140)
T PF13610_consen   75 KELNPEG   81 (140)
T ss_pred             hhccccc
Confidence            9998763

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=96.08  E-value=0.15  Score=52.72  Aligned_cols=78  Identities=18%  Similarity=0.287  Sum_probs=62.5

Q ss_pred             cccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHHHHHhhhcCCccccccHHHHHHhHHhhCCC-chhHHHHHHHhhh
Q 043258          205 VEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPT-APVQHLFWSACRT  283 (454)
Q Consensus       205 ~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~-~~~~~~~~~~~~~  283 (454)
                      ..+.+-|.-+.+.+.+...+....-+++.+|+.+.+.+++. .+|++.+.+..+|+.+.+.+.++. +++.+.++++.+.
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~al~~  313 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKALKK  313 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            55678899999999888864444468889999999998776 999999999999999999988753 3566656666554

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=95.87  E-value=0.026  Score=40.49  Aligned_cols=42  Identities=19%  Similarity=0.339  Sum_probs=33.3

Q ss_pred             CCCeEEEEEeccCCCccEEEEEEeCCCCeEEEEEecCCcccC
Q 043258            3 NRSHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCP   44 (454)
Q Consensus         3 s~~~r~~~~C~~~gC~~~v~~~~~~~~~~~~v~~~~~~Hnc~   44 (454)
                      |.-.|--++|+..+||++-.+.+..+++...++++.++|||+
T Consensus        18 ~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   18 SPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             TTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            344566799999999999999998877778888999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PHA02517 putative transposase OrfB; Reviewed

Probab=95.78  E-value=0.11  Score=49.94  Aligned_cols=151  Identities=16%  Similarity=0.079  Sum_probs=83.8

Q ss_pred             HHHHHHhhhhcc-CCCCCHHHHHHHHHHHhCCccCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhCCCcEEEEE
Q 043258           56 WISAMFLHRWKE-QPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVE  134 (454)
Q Consensus        56 ~i~~~~~~~~~~-~~~~~~~~i~~~l~~~~g~~~s~~~~~rak~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~~~~~  134 (454)
                      .+.+.+.+.... .+.+..+.|...|++. |+.+|.++++|..+..     |-...       ....-.....+.. .  
T Consensus        30 ~l~~~I~~i~~~~~~~~G~r~I~~~L~~~-g~~vs~~tV~Rim~~~-----gl~~~-------~~~k~~~~~~~~~-~--   93 (277)
T PHA02517         30 WLKSEILRVYDENHQVYGVRKVWRQLNRE-GIRVARCTVGRLMKEL-----GLAGV-------LRGKKVRTTISRK-A--   93 (277)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHhc-CcccCHHHHHHHHHHc-----CCceE-------ecCCCcCCCCCCC-C--
Confidence            455566666554 5788999999999765 9999999998764432     11000       0000000000000 0  


Q ss_pred             ecccccccccceeEEEEeecchHHHHHhhcccEEEEeCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHH
Q 043258          135 TETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYF  214 (454)
Q Consensus       135 ~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~  214 (454)
                           ....+.+.+-|-+         ..-..++..|.||..... +..++.+.+|...+ .++|+.+...++.+...-.
T Consensus        94 -----~~~~n~~~r~f~~---------~~pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr-~i~~~~~~~~~~~~~~~~~  157 (277)
T PHA02517         94 -----VAAPDRVNRQFVA---------TRPNQLWVADFTYVSTWQ-GWVYVAFIIDVFAR-RIVGWRVSSSMDTDFVLDA  157 (277)
T ss_pred             -----CCCCCcccCCCCC---------CCCCCeEEeceeEEEeCC-CCEEEEEecccCCC-eeeecccCCCCChHHHHHH
Confidence                 0001111111100         013468999999986543 56677777776554 4667888877888766555


Q ss_pred             HHHHHhhccccCCCcEEEEcCCcchH
Q 043258          215 LKNINSALRLENGKGLCILGDGDNGV  240 (454)
Q Consensus       215 l~~l~~~~~~~~~~~~~iitD~~~~l  240 (454)
                      |+......+  ...+.+|.||+....
T Consensus       158 l~~a~~~~~--~~~~~i~~sD~G~~y  181 (277)
T PHA02517        158 LEQALWARG--RPGGLIHHSDKGSQY  181 (277)
T ss_pred             HHHHHHhcC--CCcCcEeeccccccc
Confidence            555444431  223457789998864

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=95.74  E-value=0.023  Score=53.69  Aligned_cols=93  Identities=15%  Similarity=0.175  Sum_probs=69.5

Q ss_pred             EEEeCeeecCCCCcceEEEEEEeC--CCCeEEEEEEEeecccchhHHHHHHHH-HhhccccCCCcEEEEcCCcchHHHHH
Q 043258          168 LAVDGWEINNPCNSVMLVAAGLDG--NNGILPVAFCEVQVEDLDSWVYFLKNI-NSALRLENGKGLCILGDGDNGVEYAV  244 (454)
Q Consensus       168 i~~D~t~~~~~y~~~l~~~~g~d~--~~~~~~la~al~~~E~~e~~~w~l~~l-~~~~~~~~~~~~~iitD~~~~l~~Ai  244 (454)
                      |+||=+........  +..+.+|.  +++.+   ++++++-+.++..-||..+ -...   ......|++|..++..+|+
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~i---l~i~~~r~~~~l~~~~~~~~~~~~---~~~v~~V~~Dm~~~y~~~~   72 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGRI---LDILPGRDKETLKDFFRSLYPEEE---RKNVKVVSMDMSPPYRSAI   72 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCceE---EEEcCCccHHHHHHHHHHhCcccc---ccceEEEEcCCCccccccc
Confidence            45666665443332  45555555  44332   4588999999999888876 3332   4567899999999999999


Q ss_pred             hhhcCCccccccHHHHHHhHHhhC
Q 043258          245 EEFLPRAVYRQCCHRIFNEMVRRF  268 (454)
Q Consensus       245 ~~vfP~a~~~~C~~Hi~~n~~~~~  268 (454)
                      ++.||+|.+..--||+++++.+.+
T Consensus        73 ~~~~P~A~iv~DrFHvvk~~~~al   96 (249)
T PF01610_consen   73 REYFPNAQIVADRFHVVKLANRAL   96 (249)
T ss_pred             cccccccccccccchhhhhhhhcc
Confidence            999999999999999999987644

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=95.49  E-value=0.065  Score=51.31  Aligned_cols=134  Identities=12%  Similarity=0.119  Sum_probs=87.0

Q ss_pred             CCCCCHHHHHHHHHHHhCCccCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhCCCcEEEEEeccccccccccee
Q 043258           68 QPSISTTEVRNEIESMYGIKCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNIVLVETETHESREEERFK  147 (454)
Q Consensus        68 ~~~~~~~~i~~~l~~~~g~~~s~~~~~rak~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~~~~~~~~~~~~~~~~f~  147 (454)
                      ...++...+.+.+... |+++|..++.+.-.++.+..           ....+.+.+.-                     
T Consensus        18 ~~~lp~~r~~~~~~~~-G~~is~~ti~~~~~~~~~~l-----------~~~~~~l~~~~---------------------   64 (271)
T PF03050_consen   18 VYHLPLYRIQQMLEDL-GITISRGTIANWIKRVAEAL-----------KPLYEALKEEL---------------------   64 (271)
T ss_pred             cCCCCHHHHhhhhhcc-ceeeccchhHhHhhhhhhhh-----------hhhhhhhhhhc---------------------
Confidence            4456777788888777 99999999887766554322           12222222211                     


Q ss_pred             EEEEeecchHHHHHhhcccEEEEeCeeec----CCCC-cceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhc
Q 043258          148 RVFVCCARTSYAFKVHCRGILAVDGWEIN----NPCN-SVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSAL  222 (454)
Q Consensus       148 ~~f~~~~~~~~~~~~~~~~vi~~D~t~~~----~~y~-~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~  222 (454)
                                     --.+++.+|-|..+    ++.. +-+.++++-+      .+.|.+.++-+.+...-+|..     
T Consensus        65 ---------------~~~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR~~~~~~~~L~~-----  118 (271)
T PF03050_consen   65 ---------------RSSPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSRSSKVIKEFLGD-----  118 (271)
T ss_pred             ---------------cccceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccccccchhhhhcc-----
Confidence                           13578888888877    4433 3344444433      666777777777777666533     


Q ss_pred             cccCCCcEEEEcCCcchHHHHHhhhcCCccccccHHHHHHhHHhhCCC
Q 043258          223 RLENGKGLCILGDGDNGVEYAVEEFLPRAVYRQCCHRIFNEMVRRFPT  270 (454)
Q Consensus       223 ~~~~~~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~  270 (454)
                           -.-+++||+-.+-..     +..+.|+.|+.|+.|.+.+-...
T Consensus       119 -----~~GilvsD~y~~Y~~-----~~~~~hq~C~AH~~R~~~~~~~~  156 (271)
T PF03050_consen  119 -----FSGILVSDGYSAYNK-----LAGITHQLCWAHLRRDFQDAAES  156 (271)
T ss_pred             -----cceeeeccccccccc-----ccccccccccccccccccccccc
Confidence                 223789999987654     22788999999999998876653

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>smart00774 WRKY DNA binding domain

Probab=93.36  E-value=0.16  Score=36.11  Aligned_cols=40  Identities=13%  Similarity=0.142  Sum_probs=32.2

Q ss_pred             CCeEEEEEecc-CCCccEEEEEEeCCCCeEEEEEecCCccc
Q 043258            4 RSHIVSCECSD-LSCDWQVTAIRDVRGKGFVITQFSPKHNC   43 (454)
Q Consensus         4 ~~~r~~~~C~~-~gC~~~v~~~~~~~~~~~~v~~~~~~Hnc   43 (454)
                      ...|--.+|+. .|||++=.+.+..+++...++.+.++|||
T Consensus        19 ~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       19 PFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             cCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            34455689998 89999988888766666777899999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=91.99  E-value=2.3  Score=38.77  Aligned_cols=83  Identities=14%  Similarity=0.071  Sum_probs=60.6

Q ss_pred             ccEEEEeCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHHHHH
Q 043258          165 RGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAV  244 (454)
Q Consensus       165 ~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai  244 (454)
                      ++.+.+|-||.+.+-+. .+.-.+||.+|  .+|.+-|...-+...=.-||..+.+.-    +.|.+|+||+.+....|+
T Consensus        70 ~~~w~vDEt~ikv~gkw-~ylyrAid~~g--~~Ld~~L~~rRn~~aAk~Fl~kllk~~----g~p~v~vtDka~s~~~A~  142 (215)
T COG3316          70 GDSWRVDETYIKVNGKW-HYLYRAIDADG--LTLDVWLSKRRNALAAKAFLKKLLKKH----GEPRVFVTDKAPSYTAAL  142 (215)
T ss_pred             ccceeeeeeEEeeccEe-eehhhhhccCC--CeEEEEEEcccCcHHHHHHHHHHHHhc----CCCceEEecCccchHHHH
Confidence            46678999998765433 23334556664  466777777777777777887766664    478899999999999999


Q ss_pred             hhhcCCcccc
Q 043258          245 EEFLPRAVYR  254 (454)
Q Consensus       245 ~~vfP~a~~~  254 (454)
                      .++-+.+.|+
T Consensus       143 ~~l~~~~ehr  152 (215)
T COG3316         143 RKLGSEVEHR  152 (215)
T ss_pred             HhcCcchhee
Confidence            9998866655

>PRK09409 IS2 transposase TnpB; Reviewed

Probab=89.90  E-value=5.5  Score=38.76  Aligned_cols=147  Identities=11%  Similarity=0.021  Sum_probs=87.4

Q ss_pred             HHHHHHHhhhhccCCCCCHHHHHHHHHHHh---CC-ccCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhCCCcE
Q 043258           55 KWISAMFLHRWKEQPSISTTEVRNEIESMY---GI-KCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNI  130 (454)
Q Consensus        55 ~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~---g~-~~s~~~~~rak~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~  130 (454)
                      ..+.+.+.+.....+.+..+.|...|+++.   |+ .++.++++|..+.+     |-..           ...+..+.+.
T Consensus        50 ~~l~~~I~~i~~~~~~yG~Rri~~~L~~~g~~~g~~~v~~k~V~RlMr~~-----Gl~~-----------~~~~~~~~~~  113 (301)
T PRK09409         50 TDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQN-----ALLL-----------ERKPAVPPSK  113 (301)
T ss_pred             HHHHHHHHHHHHhCccCCHHHHHHHHHhhhcccCccccCHHHHHHHHHHc-----CCcc-----------cccCCCCCCC
Confidence            345555666655678899999999998752   66 58999988764432     1000           0000000000


Q ss_pred             EEEEecccccccccceeEEEEeecchHHHHHhhcccEEEEeCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeec-ccch
Q 043258          131 VLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQV-EDLD  209 (454)
Q Consensus       131 ~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~-E~~e  209 (454)
                               ......|    .         ...-..++..|-||....-++.++.++-+|...+ .++|+++... .+.+
T Consensus       114 ---------~~~~~~~----~---------~~~pN~~W~tDiT~~~~~~g~~~Yl~~ViD~~sR-~ivg~~~s~~~~~~~  170 (301)
T PRK09409        114 ---------RAHTGRV----A---------VKESNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSE  170 (301)
T ss_pred             ---------CCCCCCc----C---------CCCCCCEEEeeeEEEEeCCCCEEEEEEEeecccc-eEEEEEeccCCCCHH
Confidence                     0001111    0         0123468999999987655556888888888776 6889999875 5666


Q ss_pred             hHHHHHHH-HHhhccc-cCCCcEEEEcCCcchH
Q 043258          210 SWVYFLKN-INSALRL-ENGKGLCILGDGDNGV  240 (454)
Q Consensus       210 ~~~w~l~~-l~~~~~~-~~~~~~~iitD~~~~l  240 (454)
                      .-.-+|+. +....+. ....|.+|.||+....
T Consensus       171 ~v~~~l~~a~~~~~~~~~~~~~~iihSDrGsqy  203 (301)
T PRK09409        171 TVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCY  203 (301)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCcEEecCCCccc
Confidence            65566654 4443320 1235788999998753

>PF13565 HTH_32: Homeodomain-like domain

Probab=89.63  E-value=0.75  Score=34.52  Aligned_cols=40  Identities=18%  Similarity=0.302  Sum_probs=34.1

Q ss_pred             HHHHHhhhhccCCCCCHHHHHHHHHHHhCCcc--CHHHHHHH
Q 043258           57 ISAMFLHRWKEQPSISTTEVRNEIESMYGIKC--PEWKVFCA   96 (454)
Q Consensus        57 i~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~~--s~~~~~ra   96 (454)
                      +.+.+.+.+..+|.+++.+|.+.|.+++|+.+  |.+++||.
T Consensus        35 ~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~   76 (77)
T PF13565_consen   35 QRERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRI   76 (77)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHh
Confidence            44566677778899999999999999999876  99999874

>PRK14702 insertion element IS2 transposase InsD; Provisional

Probab=89.44  E-value=5.5  Score=37.89  Aligned_cols=147  Identities=12%  Similarity=0.045  Sum_probs=87.7

Q ss_pred             HHHHHHHhhhhccCCCCCHHHHHHHHHHH---hCC-ccCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhCCCcE
Q 043258           55 KWISAMFLHRWKEQPSISTTEVRNEIESM---YGI-KCPEWKVFCAANRAKQILGLDYDDGYAMLHQFKEEMERIDRDNI  130 (454)
Q Consensus        55 ~~i~~~~~~~~~~~~~~~~~~i~~~l~~~---~g~-~~s~~~~~rak~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~  130 (454)
                      ..+...+.+.....+.+..+.|...|++.   .|+ .++.++++|..+.+-  +.+.              .++..+-+.
T Consensus        11 ~~l~~~I~~~~~~~~~yG~rri~~~L~~~~~~~g~~~v~~krV~rlmr~~g--L~~~--------------~r~~~~~~~   74 (262)
T PRK14702         11 TDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNA--LLLE--------------RKPAVPPSK   74 (262)
T ss_pred             HHHHHHHHHHHHhCcccChHHHHHHHHhhhcccCccccCHHHHHHHHHHhC--Cccc--------------cCCCCCCCC
Confidence            45666666666667889999999999875   477 499999987644320  0000              000000000


Q ss_pred             EEEEecccccccccceeEEEEeecchHHHHHhhcccEEEEeCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeec-ccch
Q 043258          131 VLVETETHESREEERFKRVFVCCARTSYAFKVHCRGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQV-EDLD  209 (454)
Q Consensus       131 ~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~-E~~e  209 (454)
                               ......|    .         ...-..++..|-||.....++.++.++-+|...+ .++|+++... .+.+
T Consensus        75 ---------~~~~~~~----~---------~~~pn~~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~~~~~  131 (262)
T PRK14702         75 ---------RAHTGRV----A---------VKESNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSE  131 (262)
T ss_pred             ---------cCCCCcc----c---------cCCCCCEEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCcCCHH
Confidence                     0000001    0         0113468999999987654556888888887776 6788888874 5666


Q ss_pred             hHHHHHHH-HHhhccc-cCCCcEEEEcCCcchH
Q 043258          210 SWVYFLKN-INSALRL-ENGKGLCILGDGDNGV  240 (454)
Q Consensus       210 ~~~w~l~~-l~~~~~~-~~~~~~~iitD~~~~l  240 (454)
                      .-.-+|+. +....+. ....|..|.||+....
T Consensus       132 ~v~~~l~~A~~~~~~~~~~~~~~iihSD~Gsqy  164 (262)
T PRK14702        132 TVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCY  164 (262)
T ss_pred             HHHHHHHHHHHHHhcccCCCCCeEEEcCCCccc
Confidence            65556654 3333210 1335788999998754

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=88.08  E-value=2.4  Score=34.47  Aligned_cols=76  Identities=12%  Similarity=-0.037  Sum_probs=54.1

Q ss_pred             ccEEEEeCeeec-CCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHHHH
Q 043258          165 RGILAVDGWEIN-NPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYA  243 (454)
Q Consensus       165 ~~vi~~D~t~~~-~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~A  243 (454)
                      ...+.+|.+... ...++..++.+.+|..-.. .+++.+-..++.+....+|.......+  ...|.+|+||++....+.
T Consensus         6 ~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~p~~i~tD~g~~f~~~   82 (120)
T PF00665_consen    6 GERWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKRG--GRPPRVIRTDNGSEFTSH   82 (120)
T ss_dssp             TTEEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHHS---SE-SEEEEESCHHHHSH
T ss_pred             CCEEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeecccccccccccccccccccc--cccceecccccccccccc
Confidence            457889999766 3456688899999977665 446777777788888888876666652  333999999999987643

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	454
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 50/429 (11%), Positives = 111/429 (25%), Gaps = 123/429 (28%)

Query: 18  DWQVTAIRDV-RGKGFVITQFSPKHNCPRLDHAFHPASKWISAMFLHRWKEQPSIST--T 74
            + ++ I+   R    +   +  + +  RL +     +K      + R +    +     
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK----YNVSRLQPYLKLRQALL 145

Query: 75  EVRNE----IESMYGI----------------KCPEWKVF------CAANRAKQILGLDY 108
           E+R      I+ + G                    ++K+F      C  N  + +L +  
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC--NSPETVLEMLQ 203

Query: 109 DDGYAMLHQFKEEMERIDRDNIVLVETETHESR--EEERFKRVF-----VCCARTSYAFK 161
              Y +   +    +      + +   +    R  + + ++        V  A+   AF 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 162 VHCRGIL----------AVDGWEINNPC-----------NSVMLVAAGLDGNNGILPVAF 200
           + C+ IL           +      +                 L+   LD     LP   
Sbjct: 264 LSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 201 C-----------EVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEYAVEEFLP 249
                       E   + L +W  +       L                 +E ++    P
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL--------------TTIIESSLNVLEP 368

Query: 250 ---RAVYRQCCHRIFNEMVRRFPTAPVQHLFWSACRTTSATS--QECHDWLKNSNWERWA 304
              R ++ +    +F       PT  +  L W     +       + H   K S  E+  
Sbjct: 369 AEYRKMFDRLS--VFPPSA-HIPTI-LLSLIWFDVIKSDVMVVVNKLH---KYSLVEKQP 421

Query: 305 LFCMPHWVKCTCVTLTITEKLRTSFDHYLEMSITRRFTAIARSTAEIFERRRMVVWKWYR 364
                              K  T     + + +  +          I +   +    +  
Sbjct: 422 -------------------KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDS 461

Query: 365 EKVTPTVQD 373
           + + P   D
Sbjct: 462 DDLIPPYLD 470

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	454
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	96.07
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	95.97
3hot_A	345	Transposable element mariner, complete CDS; protei	91.1
3l3u_A	163	POL polyprotein; DNA integration, AIDS, integrase,	88.27
1cxq_A	162	Avian sarcoma virus integrase; mixed beta-sheet su	87.29
1c0m_A	238	Protein (integrase); HIV, X-RAY crystallography, p	84.62
2x78_A	200	Integrase; viral protein, DNA-directed DNA polyme	82.09

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=96.07  E-value=0.017  Score=42.19  Aligned_cols=43  Identities=19%  Similarity=0.247  Sum_probs=36.0

Q ss_pred             CeEEEEEeccCCCccEEEEEEeCCCCeEEEEEecCCcccCCCC
Q 043258            5 SHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRLD   47 (454)
Q Consensus         5 ~~r~~~~C~~~gC~~~v~~~~~~~~~~~~v~~~~~~Hnc~~~~   47 (454)
                      -.|--++|+..|||++-.+.+..++....++.+.++|||+.+.
T Consensus        33 ~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           33 YPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             SCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            3456699999999999999998777777888999999998753

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=95.97  E-value=0.02  Score=42.04  Aligned_cols=43  Identities=19%  Similarity=0.220  Sum_probs=36.0

Q ss_pred             CCeEEEEEeccCCCccEEEEEEeCCCCeEEEEEecCCcccCCC
Q 043258            4 RSHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRL   46 (454)
Q Consensus         4 ~~~r~~~~C~~~gC~~~v~~~~~~~~~~~~v~~~~~~Hnc~~~   46 (454)
                      .-.|--++|+..|||++-.+.+..++....++.+.++|||+.+
T Consensus        35 ~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           35 PYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             SSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             cCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            3346669999999999999998877677778899999999875

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=91.10  E-value=6.4  Score=37.25  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=40.0

Q ss_pred             CCCCcceEEEEEEeCCCCeEEEEEEEee---cccchhHHHHHHHHHhhcc--ccC----CCcEEEEcCCcch
Q 043258          177 NPCNSVMLVAAGLDGNNGILPVAFCEVQ---VEDLDSWVYFLKNINSALR--LEN----GKGLCILGDGDNG  239 (454)
Q Consensus       177 ~~y~~~l~~~~g~d~~~~~~~la~al~~---~E~~e~~~w~l~~l~~~~~--~~~----~~~~~iitD~~~~  239 (454)
                      ...++.+.++.+++.+|   .+++.+++   .-+.+.|..+|+.+...+.  .+.    ..+.+|+.|..+.
T Consensus       185 ~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~  253 (345)
T 3hot_A          185 NRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPS  253 (345)
T ss_dssp             CTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTT
T ss_pred             cCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCc
Confidence            34556777778888877   56777776   5677788888877654431  011    3467899998763

>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...

Probab=88.27  E-value=2.1  Score=35.64  Aligned_cols=65  Identities=15%  Similarity=0.182  Sum_probs=45.7

Q ss_pred             ccEEEEeCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHH
Q 043258          165 RGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVE  241 (454)
Q Consensus       165 ~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~  241 (454)
                      ..++.+|.|+..+     .++++.+|...+.. .++.+ .+++.+.-..+|..+....+     +..|.||+.....
T Consensus         9 ~~~w~~D~t~~~g-----~y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~i~sD~G~~f~   73 (163)
T 3l3u_A            9 PGIWQLDCTHLEG-----KVILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP-----VKTVHTDNGSNFT   73 (163)
T ss_dssp             TTEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC-----CCEEEECCCGGGG
T ss_pred             CCEEEEEecccCC-----cEEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC-----CcEEeecChHhhh
Confidence            3578899999854     26778888877655 55555 56677777777766666652     3689999998653

>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A

Probab=87.29  E-value=3  Score=34.74  Aligned_cols=69  Identities=12%  Similarity=-0.108  Sum_probs=46.5

Q ss_pred             cEEEEeCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHH
Q 043258          166 GILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVE  241 (454)
Q Consensus       166 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~  241 (454)
                      .++.+|-++.... +|..+.++.+|...+. ++++.+- +++.+.-..+|+.+....+    .|..|.||++....
T Consensus        12 ~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~   80 (162)
T 1cxq_A           12 QIWQTDFTLEPRM-APRSWLAVTVDTASSA-IVVTQHG-RVTSVAAQHHWATAIAVLG----RPKAIKTDNGSCFT   80 (162)
T ss_dssp             CEEEEEEEECGGG-TTSCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEECCSCHHHH
T ss_pred             CEEEeeeeecccC-CCCEEEEEEEEcCCCe-EEEEECC-CccHHHHHHHHHHHHHHHC----CCeEEEeCCchhhh
Confidence            4788998886543 4556777888877654 4556665 6666666566666555542    36699999998764

>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A

Probab=84.62  E-value=4.6  Score=36.24  Aligned_cols=70  Identities=11%  Similarity=-0.111  Sum_probs=48.6

Q ss_pred             cEEEEeCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHHH
Q 043258          166 GILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEY  242 (454)
Q Consensus       166 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~  242 (454)
                      .++.+|.|+.... ++..++++.+|...+. ++++.+- +++.+.-..+|+.+....+    .|..|.||+.....+
T Consensus        11 ~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~s   80 (238)
T 1c0m_A           11 QIWQTDFTLEPRM-APRSWLAVTVDTASSA-IVVTQHG-RVTSVAVQHHWATAIAVLG----RPKAIKTDNGSCFTS   80 (238)
T ss_dssp             SEEEEEEEECGGG-CSSCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEEECSCHHHHS
T ss_pred             CEEEEeecccccc-CCCEEEEEEEECCCCC-EEEEEcc-CCCHHHHHHHHHHHHHHhC----CCcEEEECCCCcccc
Confidence            5788999987643 4456677778876544 4566665 7777777777776666552    367999999987543

>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A

Probab=82.09  E-value=6.4  Score=33.85  Aligned_cols=68  Identities=13%  Similarity=0.076  Sum_probs=43.8

Q ss_pred             cEEEEeC-eeecCCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHH
Q 043258          166 GILAVDG-WEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVE  241 (454)
Q Consensus       166 ~vi~~D~-t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~  241 (454)
                      .++.+|- ++.... +|..++++.+|..-+.. +++.+ .+.+.+...-+|+.+   ..  .+.|..|.||++....
T Consensus        14 ~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l~~~---~~--~g~p~~i~sDnG~~f~   82 (200)
T 2x78_A           14 DKFFIDYIGPLPPS-QGYLYVLVVVDGMTGFT-WLYPT-KAPSTSATVKSLNVL---TS--IAIPRVIHSDQGAAFT   82 (200)
T ss_dssp             SEEEEEEECCCSCB-TTBCEEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHH---TT--TCCCSEEEECSCHHHH
T ss_pred             cEEEEEEeCCCccC-CCCeEEEEEEeCCCCcE-EEEEC-CCCCHHHHHHHHHHH---HH--hCCCcEEEecCCccee
Confidence            4678886 444433 56778888888776654 55655 666666655555433   32  3467899999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	454
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	96.65
d1exqa_	154	Retroviral integrase, catalytic domain {Human immu	91.03
d1cxqa_	147	Retroviral integrase, catalytic domain {Rous sarco	89.59
d1c6va_	159	Retroviral integrase, catalytic domain {Simian imm	80.74

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.65  E-value=0.0025  Score=44.11  Aligned_cols=44  Identities=20%  Similarity=0.243  Sum_probs=36.9

Q ss_pred             CCCeEEEEEeccCCCccEEEEEEeCCCCeEEEEEecCCcccCCC
Q 043258            3 NRSHIVSCECSDLSCDWQVTAIRDVRGKGFVITQFSPKHNCPRL   46 (454)
Q Consensus         3 s~~~r~~~~C~~~gC~~~v~~~~~~~~~~~~v~~~~~~Hnc~~~   46 (454)
                      |.-.|--++|+..||+++=.+.+..+++.-.++.+.++|||+.+
T Consensus        27 s~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          27 NPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            34456779999999999999999887777778899999999875

>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=91.03  E-value=0.44  Score=37.92  Aligned_cols=66  Identities=17%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             ccEEEEeCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHHH
Q 043258          165 RGILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVEY  242 (454)
Q Consensus       165 ~~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~  242 (454)
                      +.++.+|-|+..++     ++++.+|..-+ ++.++. +.+++.+.-.-||..+...+     .|..|.||++....+
T Consensus         3 pg~W~~D~~~~~~k-----~ilv~vD~~Sr-~~~~~~-~~~~~~~~v~~~l~~~~~~~-----~p~~I~sDnG~eF~s   68 (154)
T d1exqa_           3 PGIWQLDCTHLEGK-----VILVAVHVASG-YIEAEV-IPAETGQETAYFLLKLAGRW-----PVKTIHTDNGSNFTG   68 (154)
T ss_dssp             GGEEEEEEEEETTE-----EEEEEEETTTT-EEEEEE-ESSSSHHHHHHHHHHHHHHS-----CCCEEECCCCGGGTS
T ss_pred             CCceeeEEEEECCE-----EEEEEEECcCC-cEEEEE-ecCcchHHHHhhhhhheecc-----CCCEEEEcCCccccc
Confidence            34888999998765     36677887755 455555 46667777777776665543     367899999987643

>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Rous sarcoma virus RSV [TaxId: 11886]

Probab=89.59  E-value=0.74  Score=36.05  Aligned_cols=69  Identities=13%  Similarity=-0.072  Sum_probs=42.5

Q ss_pred             cEEEEeCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchHH
Q 043258          166 GILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGVE  241 (454)
Q Consensus       166 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~  241 (454)
                      .++.+|-|+.... ++..++.+.+|..-+. +.++. ..+++.+.-...|..+....    +.|..|.||.++...
T Consensus         8 ~~w~~D~~~~~~~-~~~~~l~v~vD~~Sr~-i~~~~-~~~~t~~~~~~~l~~~~~~~----g~p~~i~sDnG~~F~   76 (147)
T d1cxqa_           8 QIWQTDFTLEPRM-APRSWLAVTVDTASSA-IVVTQ-HGRVTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFT   76 (147)
T ss_dssp             CEEEEEEEECGGG-TTSCEEEEEEETTTCC-EEEEE-ESSCCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHH
T ss_pred             CEEEEEEEEecCC-CCeEEEEEEEecccce-ecccc-cCccchHHHHHHHHHHHHHh----CCCeEEEeccccccc
Confidence            4788888877643 4444556777866554 34443 55566665544444444444    257889999988653

>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Simian immunodeficiency virus [TaxId: 11723]

Probab=80.74  E-value=2  Score=33.91  Aligned_cols=63  Identities=13%  Similarity=0.060  Sum_probs=40.2

Q ss_pred             cEEEEeCeeecCCCCcceEEEEEEeCCCCeEEEEEEEeecccchhHHHHHHHHHhhccccCCCcEEEEcCCcchH
Q 043258          166 GILAVDGWEINNPCNSVMLVAAGLDGNNGILPVAFCEVQVEDLDSWVYFLKNINSALRLENGKGLCILGDGDNGV  240 (454)
Q Consensus       166 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~al~~~E~~e~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l  240 (454)
                      .++.+|-||..++     ++++.+|..- .++.|+ .+.+++.+.-..||..+...+     +|..|.||.++..
T Consensus         5 g~W~~D~t~~~~k-----~il~~vD~~S-r~~~~~-~~~~~~a~~v~~~l~~~~~~~-----~~~~I~sDnG~~F   67 (159)
T d1c6va_           5 GTWQMDCTHLEGK-----IVIVAVHVAS-GFIEAE-VIPQETGRQTALFLLKLAGRW-----PITHLHTDNGANF   67 (159)
T ss_dssp             TEEEEEEEEETTE-----EEEEEECTTS-CCEEEE-ECSSCSHHHHHHHHHHHHTTS-----CCCEEECCCCSST
T ss_pred             CceeeEEEEECCE-----EEEEEEECCC-CeEEEE-EeeccCHHHHHHHHHHHhhcc-----CCceeEecCCCcc
Confidence            4678999998765     3455566554 445665 445566666666666554433     2336889999865