Citrus Sinensis ID: 043310

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MAKLSLVFCYFIVLVLFFTNKKCQATESCEAVGVYKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDINYVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNPNFPSQVVNPGETYNHVMVYRFTAD
cccHHHHHHHHHHHHHHHccccccccccccEEEEEEEEcccEEEEEEccccEEEEEEEEccccccccEEEccccHHcccccccccccccccccccccccEEEEccEEEEEEccccccccccccccccEEcEEEEEEccccEEEEEEEccccccccccEEEEEEEEEEccccEEEEEEEEEEccccccccccccccccccccccccccccEEEEEcccEEEccccccccccccccccccccccccccccHHHccccccccEEEEEccccccccEEEEEEEEcccccEEEEEEcccEEEEEccccccccccccccEEcccEEEEEcccccccccccccccccEEccccEEEEEEEEEEEcc
ccHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEcccEEEEEEEccEEEEEEEEcccccccccEEEccccHHHHcccccccEEEEEHHHHHccccEEEEccEEEEEEccccccccccccccccEEEEEEEEccccccEEEEEEccccccccccEEEEEEEEEEccccEEEEEEEEEccccccEEEccccEEEEcccccccccccEEEEEEccccccccccccccccEcccccccccccccccHHHHHHHccccccccEEEcccccccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccEEEccccEEEEEcccccccccccccccEEEccccEEEEEEEEEEEcc
MAKLSLVFCYFIVLVLFFTNkkcqatesceAVGVyklkrgdlslkFTNYGATMLsavipdkngkladIVLGfdsvkdyktdntyFGAIVGRVANRISRAQFTLNGTRYQLinndgdnmlhggprgfSEVIWKVKSHEVNSHITFTynslegeqgfpgdlAVSVTYMFVGENNLVVKMkakplekatpvNLALHTywnlgghssgdifshklqlfgshvtpvndrliptgkitpvtgtpydflqpreigskfkelpdgydinyvldnpnpehlKKVAVVSESvsgrkmelwtnkpgvqfytsnmlgkvmgkdgfvysnyagfcletqgfpdsvnnpnfpsqvvnpgetynHVMVYRFTAD
MAKLSLVFCYFIVLVLFFTNKKCQATESCEAVGVYKLKRGDLSLKFTNYGATMLsavipdkngkLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVTPVNdrliptgkitpvtgtpydflqPREIGSKFKELPDGYDINYVLDNPNPEHLKKVAVVSEsvsgrkmelwtnkpgvqfytSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNPNFPSqvvnpgetynHVMVYRFTAD
MAKLSLVFCYFIVLVLFFTNKKCQATESCEAVGVYKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDINYVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNPNFPSQVVNPGETYNHVMVYRFTAD
***LSLVFCYFIVLVLFFTNKKCQATESCEAVGVYKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDINYVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVN**NFPSQVVNPGETYNHVMVYRF***
**KLSLVFCYFIVLVLFFTNKKCQATESCEAVGVYKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDINYVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNPNFPSQVVNPGETYNHVMVYRFTAD
MAKLSLVFCYFIVLVLFFTNKKCQATESCEAVGVYKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDINYVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNPNFPSQVVNPGETYNHVMVYRFTAD
*AKLSLVFCYFIVLVLFFTNKKCQATESCEAVGVYKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDINYVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNPNFPSQVVNPGETYNHVMVYRFTA*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKLSLVFCYFIVLVLFFTNKKCQATESCEAVGVYKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDINYVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNPNFPSQVVNPGETYNHVMVYRFTAD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q9GKX6342 Aldose 1-epimerase OS=Sus yes no 0.883 0.926 0.418 1e-70
Q66HG4342 Aldose 1-epimerase OS=Rat yes no 0.894 0.938 0.419 3e-69
Q5EA79342 Aldose 1-epimerase OS=Bos yes no 0.883 0.926 0.406 4e-68
Q5R8U1342 Aldose 1-epimerase OS=Pon yes no 0.883 0.926 0.403 5e-68
Q96C23342 Aldose 1-epimerase OS=Hom yes no 0.883 0.926 0.4 5e-68
Q8K157342 Aldose 1-epimerase OS=Mus yes no 0.883 0.926 0.412 1e-67
P05149381 Aldose 1-epimerase OS=Aci yes no 0.933 0.879 0.359 5e-57
P0A9C4346 Aldose 1-epimerase OS=Shi yes no 0.871 0.904 0.334 6e-48
P0A9C3346 Aldose 1-epimerase OS=Esc N/A no 0.871 0.904 0.334 6e-48
P31765340 Aldose 1-epimerase OS=Hae yes no 0.802 0.847 0.345 2e-42
>sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1 Back     alignment and function desciption
 Score =  266 bits (681), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 136/325 (41%), Positives = 207/325 (63%), Gaps = 8/325 (2%)

Query: 35  YKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVAN 94
           ++L+   L +   ++G T+ +  + D+ G+ +D+VLGF  +K+Y   + YFGA+VGRVAN
Sbjct: 22  FQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFAELKEYLQKHPYFGAVVGRVAN 81

Query: 95  RISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQG 154
           RI++  FTL+G  Y+L  N+G N LHGG RGF +V+W  +   +++ I F+  S +GE+G
Sbjct: 82  RIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTPRV--LSNGIEFSRVSPDGEEG 139

Query: 155 FPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLF 214
           +PG+L V VTY   G   LVV  +A+   + TPVNL  H+Y+NL G  S +I+ H++ + 
Sbjct: 140 YPGELKVWVTYTLDG-GELVVNYRAQ-ASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIE 197

Query: 215 GSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELP-DGYDINYVLDNPNPEHLK 273
                PV++ LIPTG+I PV GT +D  +P E+G   +E   +G+D N+ L     +   
Sbjct: 198 ADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHINGFDHNFCLKRSKEKQF- 256

Query: 274 KVAVVSESVSGRKMELWTNKPGVQFYTSNML-GKVMGKDGFVYSNYAGFCLETQGFPDSV 332
             A V  + SGR +E++T +PG+QFYT N L G + GK G VY  ++GFCLETQ +P++V
Sbjct: 257 -CARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPKHSGFCLETQNWPNAV 315

Query: 333 NNPNFPSQVVNPGETYNHVMVYRFT 357
           N P+FP  ++ PGE YNH   + F+
Sbjct: 316 NQPHFPPVLLKPGEEYNHTTWFVFS 340
Mutarotase converts alpha-aldose to the beta-anomer. It is active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose.
Sus scrofa (taxid: 9823)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 3
>sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1 Back     alignment and function description
>sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1 Back     alignment and function description
>sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1 Back     alignment and function description
>sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1 Back     alignment and function description
>sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1 Back     alignment and function description
>sp|P05149|GALM_ACICA Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1 Back     alignment and function description
>sp|P0A9C4|GALM_SHIFL Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1 Back     alignment and function description
>sp|P0A9C3|GALM_ECOLI Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1 Back     alignment and function description
>sp|P31765|GALM_HAEIN Aldose 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=galM PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
255540961364 aldose-1-epimerase, putative [Ricinus co 0.991 0.978 0.689 1e-143
224122584345 predicted protein [Populus trichocarpa] 0.958 0.997 0.687 1e-141
225456717354 PREDICTED: aldose 1-epimerase [Vitis vin 0.983 0.997 0.667 1e-140
297815966358 hypothetical protein ARALYDRAFT_906011 [ 0.935 0.938 0.657 1e-132
15228261358 aldose 1-epimerase [Arabidopsis thaliana 0.919 0.921 0.660 1e-130
21537069358 aldose 1-epimerase-like protein [Arabido 0.919 0.921 0.657 1e-130
449441055354 PREDICTED: aldose 1-epimerase-like [Cucu 0.972 0.985 0.629 1e-128
296082878 1699 unnamed protein product [Vitis vinifera] 0.983 0.207 0.608 1e-127
225452739359 PREDICTED: aldose 1-epimerase isoform 1 0.983 0.983 0.608 1e-127
147797710329 hypothetical protein VITISV_011619 [Viti 0.913 0.996 0.620 1e-126
>gi|255540961|ref|XP_002511545.1| aldose-1-epimerase, putative [Ricinus communis] gi|223550660|gb|EEF52147.1| aldose-1-epimerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/357 (68%), Positives = 287/357 (80%), Gaps = 1/357 (0%)

Query: 3   KLSLVFCYFIVLVLFFTNKKCQATESCEAVGVYKLKRGDLSLKFTNYGATMLSAVIPDKN 62
           K+S   C  +V +L   N         E VGVY+LKRGD S+KFTN+GA+M+SA++PDK+
Sbjct: 7   KISSFCCVLLVALLVADNYNGCRAGGTEEVGVYELKRGDFSIKFTNFGASMISAILPDKH 66

Query: 63  GKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGTRYQLINNDGD-NMLHG 121
           G LAD+VLGFDSV  YK D TYFG IVGRVANRI +AQFTL+G  Y+L+ ND   N+LHG
Sbjct: 67  GNLADVVLGFDSVDAYKNDTTYFGNIVGRVANRIGKAQFTLDGILYKLVPNDNKVNILHG 126

Query: 122 GPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKP 181
           GP+GFSEV+W V S+  +SHITFTY S +GEQGFPGDL+VSVTY  +G N L VKM AKP
Sbjct: 127 GPKGFSEVVWSVYSYRKDSHITFTYESFDGEQGFPGDLSVSVTYSIIGTNRLGVKMIAKP 186

Query: 182 LEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDF 241
            +K TPVN+ALHTYWNLGGH+SGDIFSH +Q+FGS +TPV+  LIPTG+I  + GTPYDF
Sbjct: 187 KDKPTPVNIALHTYWNLGGHNSGDIFSHTIQIFGSKITPVDKDLIPTGEIKSMEGTPYDF 246

Query: 242 LQPREIGSKFKELPDGYDINYVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTS 301
           LQPR IGS+FKELPDGYD+NYVL + NP HLKK AVV +SVSGR MELWTNKPG+QFYTS
Sbjct: 247 LQPRTIGSRFKELPDGYDMNYVLQDLNPGHLKKAAVVKDSVSGRTMELWTNKPGLQFYTS 306

Query: 302 NMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNPNFPSQVVNPGETYNHVMVYRFTA 358
           NML  V GKDG VY  YAG  LETQGFPDSVN+PNFPSQ+VNPGETY H+MVYRFTA
Sbjct: 307 NMLDNVEGKDGAVYKRYAGIALETQGFPDSVNHPNFPSQIVNPGETYEHIMVYRFTA 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122584|ref|XP_002318873.1| predicted protein [Populus trichocarpa] gi|222859546|gb|EEE97093.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225456717|ref|XP_002268039.1| PREDICTED: aldose 1-epimerase [Vitis vinifera] gi|297734005|emb|CBI15252.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297815966|ref|XP_002875866.1| hypothetical protein ARALYDRAFT_906011 [Arabidopsis lyrata subsp. lyrata] gi|297321704|gb|EFH52125.1| hypothetical protein ARALYDRAFT_906011 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15228261|ref|NP_190364.1| aldose 1-epimerase [Arabidopsis thaliana] gi|4741197|emb|CAB41863.1| aldose 1-epimerase-like protein [Arabidopsis thaliana] gi|17381242|gb|AAL36040.1| AT3g47800/T23J7_130 [Arabidopsis thaliana] gi|28416453|gb|AAO42757.1| At3g47800/T23J7_130 [Arabidopsis thaliana] gi|110742316|dbj|BAE99082.1| aldose 1-epimerase - like protein [Arabidopsis thaliana] gi|332644809|gb|AEE78330.1| aldose 1-epimerase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21537069|gb|AAM61410.1| aldose 1-epimerase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449441055|ref|XP_004138299.1| PREDICTED: aldose 1-epimerase-like [Cucumis sativus] gi|449477585|ref|XP_004155064.1| PREDICTED: aldose 1-epimerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296082878|emb|CBI22179.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452739|ref|XP_002282868.1| PREDICTED: aldose 1-epimerase isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147797710|emb|CAN61059.1| hypothetical protein VITISV_011619 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2100352358 AT3G47800 [Arabidopsis thalian 0.935 0.938 0.652 2.7e-123
TAIR|locus:2150886490 AT5G15140 [Arabidopsis thalian 0.910 0.667 0.561 4.2e-102
TAIR|locus:2088555341 AT3G17940 [Arabidopsis thalian 0.930 0.979 0.5 1.5e-90
UNIPROTKB|Q9GKX6342 GALM "Aldose 1-epimerase" [Sus 0.883 0.926 0.418 9.2e-68
ZFIN|ZDB-GENE-040718-66342 galm "galactose mutarotase" [D 0.883 0.926 0.416 1.9e-67
UNIPROTKB|Q48IT0382 galM "Aldose 1-epimerase" [Pse 0.899 0.845 0.429 2.4e-67
RGD|1359459342 Galm "galactose mutarotase (al 0.894 0.938 0.419 8.2e-67
UNIPROTKB|E2QWA2342 GALM "Uncharacterized protein" 0.880 0.923 0.414 2.8e-66
UNIPROTKB|Q5EA79342 GALM "Aldose 1-epimerase" [Bos 0.883 0.926 0.406 1.2e-65
UNIPROTKB|Q96C23342 GALM "Aldose 1-epimerase" [Hom 0.883 0.926 0.4 2e-65
TAIR|locus:2100352 AT3G47800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
 Identities = 220/337 (65%), Positives = 267/337 (79%)

Query:    23 CQATES-CEAVGVYKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTD 81
             C    S CE +  YKL RG LS+ FTNYGA M S ++PD++GK  D+VLGFD+V  YK D
Sbjct:    21 CSVNYSLCEKIKTYKLTRGSLSVTFTNYGAVMTSLLLPDRHGKQDDVVLGFDTVDGYKND 80

Query:    82 NTYFGAIVGRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSH 141
              TYFGAIVGRVANRI  A+F LNG  Y+   N+G N LHGG +GFS+VIW V+ +   SH
Sbjct:    81 TTYFGAIVGRVANRIGGAKFKLNGHLYKTDPNEGRNTLHGGSKGFSDVIWSVQKYVPTSH 140

Query:   142 ITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGH 201
             ITFTY+S +GE+GFPG++ V VTYM +GEN L VKM+AKPL K TP+NLALHTYWNL  H
Sbjct:   141 ITFTYDSFDGEEGFPGNVTVKVTYMLIGENKLGVKMEAKPLNKPTPINLALHTYWNLHSH 200

Query:   202 SSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDIN 261
             +SG+I SHK+QL    +TPV+D+LIPTG+IT +TGTPYDFL+PREIGS+  ELP GYDIN
Sbjct:   201 NSGNILSHKIQLLAGKITPVDDKLIPTGEITSITGTPYDFLEPREIGSRIHELPGGYDIN 260

Query:   262 YVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGF 321
             YV+D P  +HL+K AVV+E V+GRKMELWTN+PGVQFYTSNM+ +V+GK   VY  Y G 
Sbjct:   261 YVIDGPIGKHLRKTAVVTEQVTGRKMELWTNQPGVQFYTSNMMKRVVGKGKAVYEKYGGL 320

Query:   322 CLETQGFPDSVNNPNFPSQVVNPGETYNHVMVYRFTA 358
             CLETQGFPDSVN+ NFPSQ+VNPGE+Y HVM++RFTA
Sbjct:   321 CLETQGFPDSVNHKNFPSQIVNPGESYLHVMLFRFTA 357
GO:0003824 "catalytic activity" evidence=IEA
GO:0004034 "aldose 1-epimerase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006012 "galactose metabolic process" evidence=ISS
GO:0016853 "isomerase activity" evidence=IEA
GO:0019318 "hexose metabolic process" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2150886 AT5G15140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088555 AT3G17940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GKX6 GALM "Aldose 1-epimerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-66 galm "galactose mutarotase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q48IT0 galM "Aldose 1-epimerase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
RGD|1359459 Galm "galactose mutarotase (aldose 1-epimerase)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWA2 GALM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5EA79 GALM "Aldose 1-epimerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q96C23 GALM "Aldose 1-epimerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R8U1GALM_PONAB5, ., 1, ., 3, ., 30.40300.88300.9269yesno
P05149GALM_ACICA5, ., 1, ., 3, ., 30.35970.93310.8792yesno
P31765GALM_HAEIN5, ., 1, ., 3, ., 30.34550.80220.8470yesno
Q5EA79GALM_BOVIN5, ., 1, ., 3, ., 30.40610.88300.9269yesno
Q66HG4GALM_RAT5, ., 1, ., 3, ., 30.41940.89410.9385yesno
P0A9C4GALM_SHIFL5, ., 1, ., 3, ., 30.33430.87180.9046yesno
Q9GKX6GALM_PIG5, ., 1, ., 3, ., 30.41840.88300.9269yesno
Q8K157GALM_MOUSE5, ., 1, ., 3, ., 30.41230.88300.9269yesno
Q96C23GALM_HUMAN5, ., 1, ., 3, ., 30.40.88300.9269yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.1.3.30.824
3rd Layer5.1.30.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XII1249
aldose 1-epimerase (EC-5.1.3.3) (345 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_LG_I000617
hexokinase (508 aa)
     •  0.899
fgenesh4_pg.C_LG_VII001238
hexokinase (EC-2.7.1.2) (502 aa)
     •  0.899
fgenesh4_pg.C_LG_IX001086
hexokinase (508 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_XVIII0751
hexokinase (EC-2.7.1.1) (498 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_V1520
hexokinase/glucokinase (EC-2.7.1.4) (467 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_I1452
hexokinase (EC-2.7.1.1) (495 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
PLN00194337 PLN00194, PLN00194, aldose 1-epimerase; Provisiona 0.0
cd09019326 cd09019, galactose_mutarotase_like, galactose muta 1e-155
pfam01263301 pfam01263, Aldose_epim, Aldose 1-epimerase 1e-101
PRK11055342 PRK11055, galM, galactose-1-epimerase; Provisional 2e-98
TIGR02636336 TIGR02636, galM_Leloir, galactose mutarotase 2e-95
COG2017308 COG2017, GalM, Galactose mutarotase and related en 1e-66
PTZ00485376 PTZ00485, PTZ00485, aldolase 1-epimerase; Provisio 7e-39
cd01081284 cd01081, Aldose_epim, aldose 1-epimerase superfami 1e-29
cd09022284 cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, 2e-21
PRK15172300 PRK15172, PRK15172, putative aldose-1-epimerase; P 2e-06
cd09021273 cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, 0.003
>gnl|CDD|215098 PLN00194, PLN00194, aldose 1-epimerase; Provisional Back     alignment and domain information 
 Score =  576 bits (1487), Expect = 0.0
 Identities = 210/336 (62%), Positives = 259/336 (77%), Gaps = 2/336 (0%)

Query: 25  ATESCEAVGVYKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTY 84
           A+ + E  G+Y+LK G++S+K TNYGAT+ S ++PDKNGKLAD+VLGFDSV+ YK D+ Y
Sbjct: 2   ASAAEEKPGIYELKNGNISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDSPY 61

Query: 85  FGAIVGRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSH--EVNSHI 142
           FGAIVGRVANRI  A+FTLNG  Y+L  N+G N LHGGP+GFS+V+W+V  +       I
Sbjct: 62  FGAIVGRVANRIKGAKFTLNGVTYKLPPNNGPNSLHGGPKGFSKVVWEVAKYKKGEKPSI 121

Query: 143 TFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHS 202
           TF Y+S +GE+GFPGDL+V+VTY  +  N L + M+AKPL KATPVNLA HTYWNL GH+
Sbjct: 122 TFKYHSFDGEEGFPGDLSVTVTYTLLSSNTLRLDMEAKPLNKATPVNLAQHTYWNLAGHN 181

Query: 203 SGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDINY 262
           SGDI SHK+Q+FGSH+TPV++ LIPTG+I PV GTP+DF  P++IGS+  ELP GYD NY
Sbjct: 182 SGDILSHKIQIFGSHITPVDENLIPTGEILPVKGTPFDFTTPKKIGSRINELPKGYDHNY 241

Query: 263 VLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFC 322
           VLD    E LKK A V +  SGR +ELWTN PG+QFYTSN +  V GK G VY  +AG C
Sbjct: 242 VLDGEEKEGLKKAAKVKDPKSGRVLELWTNAPGMQFYTSNYVNGVKGKGGAVYGKHAGLC 301

Query: 323 LETQGFPDSVNNPNFPSQVVNPGETYNHVMVYRFTA 358
           LETQGFPD+VN PNFPS VVNPGE Y H M++ F+A
Sbjct: 302 LETQGFPDAVNQPNFPSVVVNPGEKYKHTMLFEFSA 337

Length = 337
>gnl|CDD|185696 cd09019, galactose_mutarotase_like, galactose mutarotase_like Back     alignment and domain information
>gnl|CDD|216397 pfam01263, Aldose_epim, Aldose 1-epimerase Back     alignment and domain information
>gnl|CDD|182931 PRK11055, galM, galactose-1-epimerase; Provisional Back     alignment and domain information
>gnl|CDD|233958 TIGR02636, galM_Leloir, galactose mutarotase Back     alignment and domain information
>gnl|CDD|224928 COG2017, GalM, Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|240435 PTZ00485, PTZ00485, aldolase 1-epimerase; Provisional Back     alignment and domain information
>gnl|CDD|185695 cd01081, Aldose_epim, aldose 1-epimerase superfamily Back     alignment and domain information
>gnl|CDD|185699 cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>gnl|CDD|237918 PRK15172, PRK15172, putative aldose-1-epimerase; Provisional Back     alignment and domain information
>gnl|CDD|185698 cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
PRK11055342 galM galactose-1-epimerase; Provisional 100.0
KOG1604353 consensus Predicted mutarotase [Carbohydrate trans 100.0
PTZ00485376 aldolase 1-epimerase; Provisional 100.0
TIGR02636335 galM_Leloir galactose mutarotase. Members of this 100.0
PLN00194337 aldose 1-epimerase; Provisional 100.0
cd09019326 galactose_mutarotase_like galactose mutarotase_lik 100.0
PRK15172300 putative aldose-1-epimerase; Provisional 100.0
COG2017308 GalM Galactose mutarotase and related enzymes [Car 100.0
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 100.0
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 100.0
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 100.0
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 100.0
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 100.0
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 100.0
cd09020269 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- 100.0
KOG1594305 consensus Uncharacterized enzymes related to aldos 99.89
cd09023284 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t 99.84
COG0676287 Uncharacterized enzymes related to aldose 1-epimer 99.81
cd09269293 deoxyribose_mutarotase deoxyribose mutarotase_like 99.28
PF14486302 DUF4432: Domain of unknown function (DUF4432); PDB 99.1
PF14315274 DUF4380: Domain of unknown function (DUF4380) 98.24
TIGR03593366 yidC_nterm membrane protein insertase, YidC/Oxa1 f 95.7
PRK01318 521 membrane protein insertase; Provisional 95.34
PF14849270 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_ 95.14
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-76  Score=566.92  Aligned_cols=328  Identities=37%  Similarity=0.706  Sum_probs=299.2

Q ss_pred             CCceeEEEEEEeC-CEEEEEeccCcEEEEEEeeCCCCceeeEEecCCCccccccCCCcccceEeeCCCccCCCEEEECCE
Q 043310           28 SCEAVGVYKLKRG-DLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGT  106 (359)
Q Consensus        28 ~~~~~~~~~L~n~-~~~v~i~~~Ga~i~sl~~~~~~G~~~dvl~g~~~~~~y~~~~~~~G~~l~P~anRi~~g~f~~~G~  106 (359)
                      +++.+..|+|+|+ +++|+|+++||+|++|++||++|+.+|||+||++.++|..++.|+|++||||||||++|+|+++|+
T Consensus         5 ~g~~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~~~~~Ga~iGr~anRI~~g~f~~~G~   84 (342)
T PRK11055          5 DGQPYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQAAYLGASVGRYANRIANSRFTLDGE   84 (342)
T ss_pred             CCCeEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccCceeCCcCCcccCCEEEECCE
Confidence            6788999999984 799999999999999999999898899999999999999888899999999999999999999999


Q ss_pred             EEEccCCCCCCCCCCCCCCCCccceEEEEeeeccEEEEEEEcCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEEeCCCce
Q 043310          107 RYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKAT  186 (359)
Q Consensus       107 ~y~l~~N~~~~~lHG~~~g~~~~~w~v~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vty~L~~~~~L~i~~~~~n~~~~~  186 (359)
                      +|+|++|+++|+|||+..||+.+.|+++... +++|+|++.++++++||||+++++|+|+|+++++|+|+|++++ +++|
T Consensus        85 ~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~-~~~v~l~~~~~~g~~GyPg~l~~~vtY~L~~~~~l~i~~~a~~-d~~t  162 (342)
T PRK11055         85 TYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN-DRQVTFSLSSPDGDQGFPGNLGATVTYRLTDDNRVSITYRATV-DKPC  162 (342)
T ss_pred             EEEcccCCCCcccCCCCcccCCcEEEEEEcc-CCEEEEEEECCCcCCCCCeEEEEEEEEEEcCCCeEEEEEEEEc-CCCe
Confidence            9999999999999999999999999998764 7899999999988999999999999999986679999999998 9999


Q ss_pred             eEeecccceeecCCC-CCCCeeceEEEEECceEEeeCCCCCCCCccccCCCCCcCCCCceeecccccc---C--CCCcce
Q 043310          187 PVNLALHTYWNLGGH-SSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKE---L--PDGYDI  260 (359)
Q Consensus       187 p~~lg~HpYFnl~~~-~~~~~~~~~L~i~a~~~~~~d~~~iPtG~~~~v~~t~~df~~~~~l~~~~~~---~--~~g~D~  260 (359)
                      |+|+|+||||||++. ...++.+|.|+|+|++++++|+++||||++.++++++|||+++++|++.+.+   .  ..||||
T Consensus       163 p~nlt~H~YFnL~g~~~~~~i~~h~L~i~a~~~~~~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~~~~~~~~~~g~D~  242 (342)
T PRK11055        163 PVNLTNHAYFNLDGAEEGSDVRNHKLQINADEYLPVDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFLADDDQQKVKGYDH  242 (342)
T ss_pred             EEeccccceEECCCCCCCCCccceEEEEecCCEEEECcccCccCcEeccCCCcccccCCcCcCcccccchhcccCCCcce
Confidence            999999999999874 2357899999999999999999999999999999999999999999886521   1  158999


Q ss_pred             eeEeCCCCCCCcceEEEEEeCCCCcEEEEEecCCEEEEEcCCCCCccCCCCCccccCceEEEEccCCCCCCCCCCCCC--
Q 043310          261 NYVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNPNFP--  338 (359)
Q Consensus       261 ~f~l~~~~~~~~~~~~~l~~~~~g~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~~pda~n~~~~~--  338 (359)
                      ||++++.. ...+++|+|.++.+|++|+|++++|++||||+++++...++.|+.|.++.+||||||++|||+|+++|+  
T Consensus       243 ~fvl~~~~-~~~~~~a~l~~~~sg~~l~v~t~~p~lqvYT~n~~~~~~~~~g~~~~~~~gialE~q~~Pda~n~~~f~~~  321 (342)
T PRK11055        243 AFLLQAKG-DGKKPAAHLWSPDEKLQMKVYTTAPALQFYSGNFLAGTPSRGGGPYADYAGLALESQFLPDSPNHPEWPQP  321 (342)
T ss_pred             EEEECCCC-cccceeEEEEcCCCCeEEEEEcCCCEEEEecCCccCCccCCCCcEeCCCceEEEEcccCCCcccccCCCCC
Confidence            99996421 113567999999999999999999999999999886545677888999999999999999999999996  


Q ss_pred             ceEECCCCEEEEEEEEEEEe
Q 043310          339 SQVVNPGETYNHVMVYRFTA  358 (359)
Q Consensus       339 ~~~L~pGe~~~~~~~y~f~~  358 (359)
                      .++|+|||+|+++++|+|++
T Consensus       322 ~~~L~pg~~y~~~t~y~f~~  341 (342)
T PRK11055        322 DCILKPGEEYRSLTEYQFIA  341 (342)
T ss_pred             CeEECCCCEEEEEEEEEEEe
Confidence            89999999999999999986

>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like Back     alignment and domain information
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 Back     alignment and domain information
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like Back     alignment and domain information
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A Back     alignment and domain information
>PF14315 DUF4380: Domain of unknown function (DUF4380) Back     alignment and domain information
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain Back     alignment and domain information
>PRK01318 membrane protein insertase; Provisional Back     alignment and domain information
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1snz_A344 Crystal Structure Of Apo Human Galactose Mutarotase 3e-69
1lur_A339 Crystal Structure Of The GalmALDOSE EPIMERASE HOMOL 2e-39
1l7j_A347 X-Ray Structure Of Galactose Mutarotase From Lactoc 1e-27
1ns0_A347 Crystal Structure Of Galactose Mutarotase From Lact 2e-27
1ns8_A347 Crystal Structure Of Galactose Mutarotase From Lact 5e-27
1ns2_A347 Crystal Structure Of Galactose Mutarotase From Lact 5e-27
1nsm_A347 Crystal Structure Of Galactose Mutarotase From Lact 8e-27
1nsu_A347 Crystal Structure Of Galactose Mutarotase From Lact 9e-27
1nsx_A347 Crystal Structure Of Galactose Mutarotase From Lact 9e-27
1z45_A699 Crystal Structure Of The Gal10 Fusion Protein Galac 4e-24
3imh_A338 Crystal Structure Of Galactose 1-Epimerase From Lac 2e-23
1yga_A342 Crystal Structure Of Saccharomyces Cerevisiae Yn9a 7e-17
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase Length = 344 Back     alignment and structure 
Iteration: 1

 Score =  258 bits (659), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/325 (40%), Positives = 204/325 (62%), Gaps = 8/325 (2%)
Query: 35  YKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVAN 94
           ++L+   L +   ++G T+ +  + D+ G+ +D+VLGF  ++ Y     YFGA++GRVAN
Sbjct: 24  FQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVAN 83
Query: 95  RISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQG 154
           RI++  F ++G  Y L  N   N LHGG RGF +V+W  +   +++ + F+  S +GE+G
Sbjct: 84  RIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRV--LSNGVQFSRISPDGEEG 141
Query: 155 FPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLF 214
           +PG+L V VTY   G   L+V  +A+   +ATPVNL  H+Y+NL G +S +I  H++ + 
Sbjct: 142 YPGELKVWVTYTLDG-GELIVNYRAQ-ASQATPVNLTNHSYFNLAGQASPNINDHEVTIE 199
Query: 215 GSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELP-DGYDINYVLDNPNPEHLK 273
                PV++ LIPTG++ PV GT +D  +P E+G   ++   +G+D N+ L     +H  
Sbjct: 200 ADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEKHF- 258
Query: 274 KVAVVSESVSGRKMELWTNKPGVQFYTSNML-GKVMGKDGFVYSNYAGFCLETQGFPDSV 332
             A V  + SGR +E++T +PGVQFYT N L G + GK+G VY  ++GFCLETQ +PD+V
Sbjct: 259 -CARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAV 317
Query: 333 NNPNFPSQVVNPGETYNHVMVYRFT 357
           N P FP  ++ PGE Y+H   ++F+
Sbjct: 318 NQPRFPPVLLRPGEEYDHTTWFKFS 342
>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE From C. Elegans, Northeast Structural Genomics Target Wr66 Length = 339 Back     alignment and structure
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus Lactis (Apo) Length = 347 Back     alignment and structure
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant E304q Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant D243n Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NS2|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant E304a Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant D243a Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant H96n Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus Lactis Mutant H170n Complexed With Galactose Length = 347 Back     alignment and structure
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 Back     alignment and structure
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From Lactobacillus Acidophilus Ncfm Length = 338 Back     alignment and structure
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a Protein, New York Structural Genomics Consortium Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 1e-175
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 1e-170
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 1e-160
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 1e-149
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 1e-146
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 2e-70
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 2e-54
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 9e-50
3os7_A341 Galactose mutarotase-like protein; structural geno 1e-39
3q1n_A294 Galactose mutarotase related enzyme; structural ge 7e-16
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 2e-12
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 6e-04
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Length = 344 Back     alignment and structure
 Score =  488 bits (1260), Expect = e-175
 Identities = 129/330 (39%), Positives = 202/330 (61%), Gaps = 8/330 (2%)

Query: 30  EAVGVYKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIV 89
             V  ++L+   L +   ++G T+ +  + D+ G+ +D+VLGF  ++ Y     YFGA++
Sbjct: 19  GTVEKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVI 78

Query: 90  GRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSL 149
           GRVANRI++  F ++G  Y L  N   N LHGG RGF +V+W  +   +++ + F+  S 
Sbjct: 79  GRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPR--VLSNGVQFSRISP 136

Query: 150 EGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSH 209
           +GE+G+PG+L V VTY       L+V  +A+   +ATPVNL  H+Y+NL G +S +I  H
Sbjct: 137 DGEEGYPGELKVWVTYTLD-GGELIVNYRAQA-SQATPVNLTNHSYFNLAGQASPNINDH 194

Query: 210 KLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELP-DGYDINYVLDNPN 268
           ++ +      PV++ LIPTG++ PV GT +D  +P E+G   ++   +G+D N+ L    
Sbjct: 195 EVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSK 254

Query: 269 PEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNML-GKVMGKDGFVYSNYAGFCLETQG 327
                  A V  + SGR +E++T +PGVQFYT N L G + GK+G VY  ++GFCLETQ 
Sbjct: 255 --EKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQN 312

Query: 328 FPDSVNNPNFPSQVVNPGETYNHVMVYRFT 357
           +PD+VN P FP  ++ PGE Y+H   ++F+
Sbjct: 313 WPDAVNQPRFPPVLLRPGEEYDHTTWFKFS 342
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Length = 339 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Length = 347 Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Length = 342 Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Length = 338 Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Length = 326 Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Length = 291 Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Length = 341 Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Length = 294 Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Length = 307 Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Length = 289 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 100.0
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 100.0
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 100.0
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 100.0
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 100.0
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 100.0
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 100.0
3os7_A341 Galactose mutarotase-like protein; structural geno 100.0
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 100.0
3q1n_A294 Galactose mutarotase related enzyme; structural ge 100.0
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 100.0
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 100.0
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 100.0
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 100.0
1jov_A270 HI1317; hypothetical protein, structure 2 function 99.96
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 99.87
3bs6_A280 Inner membrane protein OXAA; YIDC/OXA1/ALB3 family 92.36
3blc_A330 Inner membrane protein OXAA; YIDC, membrane assemb 90.03
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
Probab=100.00  E-value=6.4e-73  Score=540.26  Aligned_cols=308  Identities=27%  Similarity=0.493  Sum_probs=280.7

Q ss_pred             CCceeEEEEEEeC-CEEEEEeccCcEEEEEEeeCCCCceeeEEecCCCccccccCCCcccceEeeCCCccCCCEEEECCE
Q 043310           28 SCEAVGVYKLKRG-DLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGT  106 (359)
Q Consensus        28 ~~~~~~~~~L~n~-~~~v~i~~~Ga~i~sl~~~~~~G~~~dvl~g~~~~~~y~~~~~~~G~~l~P~anRi~~g~f~~~G~  106 (359)
                      +++.+..|+|+|+ +++|+|+++||+|+||+++   +  +||||||++.++|..++.++|++||||||||++|+|+++|+
T Consensus        14 ~g~~v~~~tL~n~~g~~v~i~~~GA~l~sl~~~---~--~dvvlg~~~~~~y~~~~~~~G~~lgp~anRI~~g~f~~~G~   88 (338)
T 3imh_A           14 DNKDLCEITLENDAGMAVKVLNYGATLEKVLLD---G--ENMILSLNSPEDYSKERNFLGGTVGRIAGRVRAGQWKHGNE   88 (338)
T ss_dssp             TTEEEEEEEEECSSSEEEEEETBTTEEEEEEET---T--EECBCCCSSGGGGGTSCCCTTCEECSBCSEEGGGEEEETTE
T ss_pred             CCeEEEEEEEECCCcEEEEEecCCcEEEEEEEC---C--EEEEecCCChHHhccCCCeEeeEEEeeCCEecCCEEEECCE
Confidence            7889999999998 6999999999999999995   3  79999999999999888999999999999999999999999


Q ss_pred             EEEccCCCCCCCCCCCCCCCCccceEEEEe--eeccEEEEEEEcCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEEeCCC
Q 043310          107 RYQLINNDGDNMLHGGPRGFSEVIWKVKSH--EVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEK  184 (359)
Q Consensus       107 ~y~l~~N~~~~~lHG~~~g~~~~~w~v~~~--~~~~~v~l~~~~~~~~~gyP~~~~~~vty~L~~~~~L~i~~~~~n~~~  184 (359)
                      +|+|++|+++|+|||++ ||+++.|+++..  .++++|+|++.++++++||||+++++|+|+|+++++|+|+|+++. ++
T Consensus        89 ~y~L~~N~g~n~LHGg~-g~~~~~W~v~~~~~~~~~~v~l~l~s~d~~~gyPg~~~~~vtY~L~~~~~L~i~~~a~~-d~  166 (338)
T 3imh_A           89 IHQLPLNDGDNHIHGGI-GTDMHVWDFRPSCDSEHARVDLTLFDPDGNNDYPGNLKLHARYELDNENNLHYLLEAVS-DK  166 (338)
T ss_dssp             EEECCCCBTTBEETTSS-CGGGSBCEEEEEECSSEEEEEEEEEECTTGGGCCSCEEEEEEEEEETTSEEEEEEEEEE-SS
T ss_pred             EEECCCCCCCcCCCCCC-CcCCceEEEEeeeecCCCEEEEEEECCccccCCCeEEEEEEEEEEecCCeEEEEEEEec-CC
Confidence            99999999999999999 999999999532  135789999999888899999999999999996689999999998 99


Q ss_pred             ceeEeecccceeecCCCCCCCeeceEEEEECceEEeeCCCCCCCCccccCCCCCcCCCCceeeccccccC------CCCc
Q 043310          185 ATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKEL------PDGY  258 (359)
Q Consensus       185 ~~p~~lg~HpYFnl~~~~~~~~~~~~L~i~a~~~~~~d~~~iPtG~~~~v~~t~~df~~~~~l~~~~~~~------~~g~  258 (359)
                      +||||+|+||||||++    ++.+|+|+|+|++++++|+++||||++.+|++++|||+.+++|++.+.+.      ..||
T Consensus       167 ~tp~nlg~HpYFnL~g----~i~~~~L~i~a~~~~~~d~~~iPTG~~~~v~gt~~DFr~~~~ig~~~~~~~~q~~~~~g~  242 (338)
T 3imh_A          167 LTIFNPVNHTYFNLGE----RAEDLNLQMNADYYLPVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKLRNGL  242 (338)
T ss_dssp             SEECBCEECCEECTTS----CGGGCEEEECEEEECCBCTTSSBSSCCEECTTSTTCCSSCEEHHHHHTSCCHHHHHHTSC
T ss_pred             CeEEEEeeCCEEeCCC----CcCCeEEEEEcCcEEEeCCccCCcCceecCCCCcccCCCCeEcchhhhccchhhcccCCC
Confidence            9999999999999986    68999999999999999999999999999999999999999999876432      1589


Q ss_pred             ceeeEeCCCCCCCcceEEEEEeCCCCcEEEEEecCCEEEEEcCCCCCccCCCCCccccCceEEEEccCCCCCCCCCCCCC
Q 043310          259 DINYVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNPNFP  338 (359)
Q Consensus       259 D~~f~l~~~~~~~~~~~~~l~~~~~g~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~~pda~n~~~~~  338 (359)
                      ||||++++.     .++|+|.+  +|++|+|++++|++||||+++++.. + .|..|.++.+||||||++|  +|+++|+
T Consensus       243 Dh~f~l~~~-----~~~a~l~~--sg~~l~v~t~~p~~q~YTgn~l~~~-g-~g~~~~~~~g~clE~q~~P--~n~~~f~  311 (338)
T 3imh_A          243 DHPFILNGN-----NPAALLSS--NKHRLIVKTNAPALVLYAGNHFNHT-G-IVNNIGQYDGITFEAQCPP--AEGNDLG  311 (338)
T ss_dssp             EEEEEECSC-----SCSEEEEC--SSEEEEEEESSSEEEEECCTTCCSB-T-TBTTCCTTSCEECEEESCC--CSSSCCG
T ss_pred             CCceeecCC-----ceEEEEEC--CCeEEEEEeCCCEEEEeCCCCcCCC-C-CCcccCccCEEEEEccCCC--CCCCCCC
Confidence            999999531     34678864  8999999999999999999988654 4 5778888999999999988  8999999


Q ss_pred             ceEECCCCEEEEEEEEEEE
Q 043310          339 SQVVNPGETYNHVMVYRFT  357 (359)
Q Consensus       339 ~~~L~pGe~~~~~~~y~f~  357 (359)
                      .++|+|||+|+++++|+|.
T Consensus       312 ~~vL~pGe~y~~~t~y~f~  330 (338)
T 3imh_A          312 QITLLPFEKFKRTVDWKFE  330 (338)
T ss_dssp             GGEECTTCCEEEEEEEEEE
T ss_pred             CeEECCCCEEEEEEEEEEC
Confidence            9999999999999999996
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} Back     alignment and structure
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic inner membrane, transmembrane; 2.50A {Escherichia coli K12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d1nsza_340 b.30.5.4 (A:) Galactose mutarotase {Lactococcus la 3e-98
d1lura_329 b.30.5.4 (A:) Aldose 1-epimerase homologue {Nemato 3e-95
d1so0a_344 b.30.5.4 (A:) Galactose mutarotase {Human (Homo sa 4e-94
d1z45a1342 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's 2e-83
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Length = 340 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Aldose 1-epimerase (mutarotase)
domain: Galactose mutarotase
species: Lactococcus lactis [TaxId: 1358]

 Score =  292 bits (749), Expect = 3e-98
 Identities = 86/338 (25%), Positives = 142/338 (42%), Gaps = 20/338 (5%)

Query: 30  EAVGVYKLK-RGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAI 88
               +  L  +  +++ FTN GA      I D       ++LGFDS K+Y   + Y GA 
Sbjct: 9   LGSDLISLTNKAGVTISFTNLGAR-----IVDWQKDGKHLILGFDSAKEYLEKDAYPGAT 63

Query: 89  VGRVANRISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHE--VNSHITFTY 146
           VG  A RI      ++G  Y L  N+G   LHGG       +W  +  +      + F+ 
Sbjct: 64  VGPTAGRIKDGLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSL 123

Query: 147 NSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDI 206
            S +G  G+PG + +SVT+ F  +N   +  +A   +K T  N   + Y+NL G +S  +
Sbjct: 124 VSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGNVYFNLNGDASESV 182

Query: 207 FSHKLQLFGSHVTPVND-RLIPTGKITPVTGTPYDFLQPREIGSKFK------ELPDGYD 259
            +H L+L  S   P+ D   I  G I  +  T  DF Q +++ + F       +L  G D
Sbjct: 183 ENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGID 242

Query: 260 INYVLDNPNPEHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYA 319
             ++LD    +          ++    + ++T++P +  +T+N              ++ 
Sbjct: 243 HPFLLDQLGLDK----EQARLTLDDTSISVFTDQPSIVIFTANFGDLGTLYHEKKQVHHG 298

Query: 320 GFCLETQGFPDSVNNPNFPSQVVNPGETYNHVMVYRFT 357
           G   E Q  P S   P      +  GE Y    +Y   
Sbjct: 299 GITFECQVSPGSEQIPELGDISLKAGEKYQATTIYSLH 336
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 329 Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Length = 344 Back     information, alignment and structure
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d1lura_329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 100.0
d1nsza_340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 100.0
d1so0a_344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 100.0
d1z45a1342 Galactose mutarotase {Baker's yeast (Saccharomyces 100.0
d1jova_269 Hypothetical protein HI1317 {Haemophilus influenza 99.96
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Aldose 1-epimerase (mutarotase)
domain: Aldose 1-epimerase homologue
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-73  Score=544.28  Aligned_cols=320  Identities=30%  Similarity=0.559  Sum_probs=292.4

Q ss_pred             EEEEEeC-CEEEEEeccCcEEEEEEeeCCCCceeeEEecCCCccccccCCCcccceEeeCCCccCCCEEEECCEEEEccC
Q 043310           34 VYKLKRG-DLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGTRYQLIN  112 (359)
Q Consensus        34 ~~~L~n~-~~~v~i~~~Ga~i~sl~~~~~~G~~~dvl~g~~~~~~y~~~~~~~G~~l~P~anRi~~g~f~~~G~~y~l~~  112 (359)
                      .|+|+|+ +++|+|+++||+|.+|.+||++|+.+|||+||++.++|..++.|+|++||||||||++|+|+++|++|+|++
T Consensus         4 ~i~l~N~~g~~v~i~~~GA~i~~l~~pd~~g~~~~vvlg~d~~~~Y~~~~~~~Ga~igr~aNRI~~g~f~~~G~~y~L~~   83 (329)
T d1lura_           4 FIEIANKQGLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEKDAASIGKTVGRVANRIKNSTLHFDGKQYTMTP   83 (329)
T ss_dssp             CEEEECSSSCEEEEETBTTEEEEEEEECTTSCEEECBCCCSSHHHHHHCSSCTTCEECSBCSEEGGGEEEETTEEEECCC
T ss_pred             EEEEECCCCcEEEEECCCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCccCcEecCcCCeeeCCeEEECCEEEEecc
Confidence            5899996 699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccceEEEEeeeccEEEEEEEcCCCCCCCCeeEEEEEEEEEeCCCeEEEEEEEEeCCCceeEeecc
Q 043310          113 NDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLAL  192 (359)
Q Consensus       113 N~~~~~lHG~~~g~~~~~w~v~~~~~~~~v~l~~~~~~~~~gyP~~~~~~vty~L~~~~~L~i~~~~~n~~~~~p~~lg~  192 (359)
                      |+++|+|||+..||+.+.|+++... +++++|++.+++++.||||++.++|+|+|++++.|+|+++++. ++++|+++|+
T Consensus        84 N~~~n~lHGg~~g~~~~~w~v~~~~-~~~v~~~~~~~~~~~GyPg~l~~~vtY~L~~~~~l~i~~~a~~-d~~tp~nlt~  161 (329)
T d1lura_          84 NNGPHYLHGGPNGLGYRKWEVVRHA-PESVSFSVRANEQDDGLPGDAKIDVTYTVNDRNQLIIEHHATC-DTPGLLALTN  161 (329)
T ss_dssp             SBTTBEETTCTTSGGGSBCEEEEEE-TTEEEEEEEEEHHHHSSSSEEEEEEEEEECTTSEEEEEEEEEC-SSCEECBCEE
T ss_pred             CCCCcccccCCCCcceEEEEEEeec-CceeEEEEEecCCccCcccceEEEEEEEEccCCEEEEEEEEee-cccccccccc
Confidence            9999999999999999999998874 8899999999888889999999999999997789999999998 9999999999


Q ss_pred             cceeecCCCCCCCeeceEEEEECceEEeeCCCCCCCCccccCCCCCcCCCCceeeccccccC--CCCcceeeEeCCCCC-
Q 043310          193 HTYWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKEL--PDGYDINYVLDNPNP-  269 (359)
Q Consensus       193 HpYFnl~~~~~~~~~~~~L~i~a~~~~~~d~~~iPtG~~~~v~~t~~df~~~~~l~~~~~~~--~~g~D~~f~l~~~~~-  269 (359)
                      ||||||++.  .++.+|.|+++|++++++|+++||||++.++++++|||+.+++|++.+.+.  ..++|++|++..... 
T Consensus       162 H~YFnL~~~--~~i~~h~L~i~a~~~l~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~  239 (329)
T d1lura_         162 HAYWNLDGS--DTVAEHFLEMEADEFVEVDDTFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLDLDNDLVITKKTPP  239 (329)
T ss_dssp             CCEECSSCC--SCSTTCEEEECEEEEEEECTTSCEEEEEEECTTSTTCCTTCEETTCSCCCSSCCCCCEEEEEECCCCC-
T ss_pred             cceeecccc--ccccCeEEEeCcCeEEEeCccccccccccccccccccccccccccccccccccceecCCCEEEeecccC
Confidence            999999863  578999999999999999999999999999999999999999999876442  357999999764321 


Q ss_pred             CCcceEEEEEeCCCCcEEEEEecCCEEEEEcCCCCCccCCCCCccccCceEEEEccCCCCCCCCCCCCCceEECCCCEEE
Q 043310          270 EHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNPNFPSQVVNPGETYN  349 (359)
Q Consensus       270 ~~~~~~~~l~~~~~g~~l~v~t~~p~l~vyt~~~~~~~~~~~~~~~~~~~~iciEP~~~pda~n~~~~~~~~L~pGe~~~  349 (359)
                      ......++|.++.+|++|+|++++|++||||+++++. +++.|..+.++.+||||||++|||+|+++|+.++|+|||+|+
T Consensus       240 ~~~~~~~~l~~~~sg~~l~v~t~~p~~qvYT~~~l~~-~~~~g~~~~~~~gi~lEpq~~PdA~N~~~f~~~~L~pge~y~  318 (329)
T d1lura_         240 STPSTYLRFWSEKSGIELSITTSYPVIHLYASKFLDC-KGKKGEHYKANKALAIEPQFHSAAPNFDHFPDVSLRPGDHYC  318 (329)
T ss_dssp             ---CCCEEEECTTTCEEEEEEESSSEEEEECCTTCCE-ECGGGCEECTTCCEEEEEESCTTGGGCTTSCCCEECTTCCEE
T ss_pred             CCcceeEEEeCCCCceEEEEeCCCCEEEEeCCCCcCC-CCCCCCCcCCCCEEEEEccCCCCccccCCCCCeEECCCCEEE
Confidence            1123458999999999999999999999999998864 577788888999999999999999999999999999999999


Q ss_pred             EEEEEEEEe
Q 043310          350 HVMVYRFTA  358 (359)
Q Consensus       350 ~~~~y~f~~  358 (359)
                      +++.|+|+.
T Consensus       319 ~~~~y~Fs~  327 (329)
T d1lura_         319 QEIVYTFSH  327 (329)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEec
Confidence            999999984
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure