Citrus Sinensis ID: 043317

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700
Protein Sequence
YSGSLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDEDDFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALIML
Secondary Structure (PSIPRED)
cEEccccccccccccccccccccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEccccccEEEccccccccccccEEEccccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccHHcccccccEEEccccEEEEEccccccccccccEEEccccEEEEcccccccccccccEEEccccccccccccccccccccccEEccccEEEEEccHHHHccccccEEEccccccEEEcccccccccccEEEccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEEEEEEEEEEHHHHHHHHHHHccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHccHHHHHHHHHHHcccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHcccHHHHHHHHcccccccccHHHcccccccEEEEccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEccccccccccccccccccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccEEEEEEcccccccccccHHHccHHHHHHHccccccccccccccccEEEcccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
YSGSLTNLYIFLTGLANLTILQVLdlsgsssnclkYLSHLKVLdishnqlsgslsstitslTSLEYLDlsynnfegpcplsslanhSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANcslnvvptfllhqydlkyLDLSLnnlvgdfpswmlqnntkLEVLFLTnnsftgnlrlpntkhdflhhldassnnfigtlpQDMGTILKKLLVLDIsnnhfegnipssvGEMKELIILHLsknnfsedfstpfltgCISLWfldlsdnnfygqffskdlnlTQMEFLYLENNKFSGKIEEGLLNSTKLYQldishnflsghiphwmgnFSNLEILLMSNnclegnipvqllnhRTLKLLSVSenylsgsmtssfnlsslKHLYVQKnalsgpipdmlfrssklmtldlrgnnlegqipDQICQLRRLGmmdlshnrfngsipscFTNMLQWTIENVdlfggelsifpplgfcyigtyynstldlevckrdmftspqqvKVEFVTKNRyelyngsnlnymVGLDLScneltgnvpseigdlqkirglnlshnclsgsiprsfsnlQMIESLdlsnnrlsgqipAQLIELNFLSNFNVSynnlsglipdkgqystfdessyrgnlylcgptinkscnsaeetpaikskgrededdFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALIML
Flexible Loop (DISEMBL)
YSGSLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEEtpaikskgrededdFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALIML
Low Complexity Region (SEG)
YSGSLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQlsgslsstitsltslEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDEDDFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALIML
Disordered region (IsUnstruct)
****LTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINK********************DFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALI**
Disordered Region (DISOPRED)
YSGSLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGP*****************************MVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALIML
Disordered Region (DISEMBL)
YSGSLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDEDDFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALIML
Disordered Region (DISPRO)
*SGSLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCN*****************DFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALIML
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YSGSLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDEDDFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALIML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	700	2.2.26 [Sep-21-2011]
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.797	0.466	0.324	5e-60
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.902	0.506	0.294	1e-58
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.895	0.519	0.310	3e-58
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.897	0.520	0.306	8e-58
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.787	0.539	0.323	2e-55
Q9LHP4	1141	Receptor-like protein kin	no	no	0.802	0.492	0.314	7e-54
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.831	0.509	0.304	1e-53
Q9LRT1	1016	Probably inactive leucine	no	no	0.788	0.543	0.315	3e-53
O82318	960	Probably inactive leucine	no	no	0.848	0.618	0.298	7e-53
O80809	720	Leucine-rich repeat recep	no	no	0.837	0.813	0.313	4e-52

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  233 bits (593), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 212/653 (32%), Positives = 306/653 (46%), Gaps = 95/653 (14%)

Query: 23  VLDLSGSSSNCLKYLSHLKVLDISHNQLSGS-LSSTITS--LTSLEYLDLSYNNFEGPCP 79
            LD  G  S  LK L+ L+VLD+S N +SG+ +   + S     L++L +S N   G   
Sbjct: 159 TLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 217

Query: 80  LSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKY 139
           +S   N   LE L +SS N             F   +  L +CS             L++
Sbjct: 218 VSRCVN---LEFLDVSSNN-------------FSTGIPFLGDCSA------------LQH 249

Query: 140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGT 199
           LD+S N L GDF S  +   T+L++L +++N F G   +P      L +L  + N F G 
Sbjct: 250 LDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGE 306

Query: 200 LPQDMGTILKKLLVLDISNNHFEGNIPSSVG-------------------------EMKE 234
           +P  +      L  LD+S NHF G +P   G                         +M+ 
Sbjct: 307 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 366

Query: 235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ-----MEFLYL 289
           L +L LS N FS +          SL  LDLS NNF G       NL Q     ++ LYL
Sbjct: 367 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYL 423

Query: 290 ENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ 349
           +NN F+GKI   L N ++L  L +S N+LSG IP  +G+ S L  L +  N LEG IP +
Sbjct: 424 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 483

Query: 350 LLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDL 408
           L+  +TL+ L +  N L+G + S   N ++L  + +  N L+G IP  + R   L  L L
Sbjct: 484 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 543

Query: 409 RGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPP 468
             N+  G IP ++   R L  +DL+ N FNG+IP+           N     G+      
Sbjct: 544 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN--FIAGKR----- 596

Query: 469 LGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVE----FVTKN----RYELYNG------S 514
             + YI    N  +  E          Q ++ E      T+N       +Y G       
Sbjct: 597 --YVYI---KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 651

Query: 515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSN 574
           N   M+ LD+S N L+G +P EIG +  +  LNL HN +SGSIP    +L+ +  LDLS+
Sbjct: 652 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 711

Query: 575 NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCG 627
           N+L G+IP  +  L  L+  ++S NNLSG IP+ GQ+ TF  + +  N  LCG
Sbjct: 712 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 764

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 217/737 (29%), Positives = 350/737 (47%), Gaps = 105/737 (14%)

Query: 16  ANLTILQVLD--LSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNN 73
           ++LT+    +  L+G+    L  L +L++L++++N L+G + S +  ++ L+YL L  N 
Sbjct: 215 SDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQ 274

Query: 74  FEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLH 133
            +G  P  SLA+   L+ L LS+ NN+     E F    QL  L LAN            
Sbjct: 275 LQGLIP-KSLADLGNLQTLDLSA-NNLTGEIPEEFWNMSQLLDLVLAN------------ 320

Query: 134 QYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASS 193
                      N+L G  P  +  NNT LE L L+    +G + +  +K   L  LD S+
Sbjct: 321 -----------NHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSN 369

Query: 194 NNFIGTLPQDM-----------------GTI------LKKLLVLDISNNHFEGNIPSSVG 230
           N+  G++P+ +                 GT+      L  L  L + +N+ EG +P  + 
Sbjct: 370 NSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEIS 429

Query: 231 EMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE 290
            +++L +L L +N FS +     +  C SL  +D+  N+F G+       L ++  L+L 
Sbjct: 430 ALRKLEVLFLYENRFSGEIPQE-IGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLR 488

Query: 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL 350
            N+  G +   L N  +L  LD++ N LSG IP   G    LE L++ NN L+GN+P  L
Sbjct: 489 QNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSL 548

Query: 351 LNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRG 410
           ++ R L  +++S N L+G++      SS     V  N     IP  L  S  L  L L  
Sbjct: 549 ISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGK 608

Query: 411 NNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS--IFPP 468
           N L G+IP  + ++R L ++D+S N   G+IP     +L   + ++DL    LS  I P 
Sbjct: 609 NQLTGKIPWTLGKIRELSLLDMSSNALTGTIP--LQLVLCKKLTHIDLNNNFLSGPIPPW 666

Query: 469 LG-FCYIGT------YYNSTLDLEV--CKRDMFTS----------PQQV------KVEFV 503
           LG    +G        +  +L  E+  C + +  S          PQ++       V  +
Sbjct: 667 LGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNL 726

Query: 504 TKNRYELYNGS------NLNYMVGLDLSCNELTGNVPSEIGDLQKIR-GLNLSHNCLSGS 556
            KN+   ++GS       L+ +  L LS N LTG +P EIG LQ ++  L+LS+N  +G 
Sbjct: 727 DKNQ---FSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGD 783

Query: 557 IPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDE 616
           IP +   L  +E+LDLS+N+L+G++P  + ++  L   NVS+NNL G +  K Q+S +  
Sbjct: 784 IPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPA 841

Query: 617 SSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDEDDFVIDMVSLYWSFGASYVTVILGL 676
            S+ GN  LCG  +++ CN        K +G       +I  +S   + G          
Sbjct: 842 DSFLGNTGLCGSPLSR-CNRVRSNN--KQQGLSARSVVIISAISALTAIG---------- 888

Query: 677 FAILWINSFWRKRWFYF 693
             IL I  F+++R  +F
Sbjct: 889 LMILVIALFFKQRHDFF 905

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  227 bits (578), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 216/696 (31%), Positives = 332/696 (47%), Gaps = 69/696 (9%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLT-SLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
           S+LK L++S N L       + + T SL+ LDLSYNN  G      +++   +E+   S 
Sbjct: 160 SNLKSLNLSKNFLDPPGKEMLKAATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSL 219

Query: 97  TNNMLLVKTENFLPTFQLKVLELANCSLN----VVPTFLLHQYDLKYLDLSLNNLVGDFP 152
             N    K    +P    K L   + S N    V P+F     +L++LDLS N   GD  
Sbjct: 220 KGN----KLAGSIPELDFKNLSYLDLSANNFSTVFPSF-KDCSNLQHLDLSSNKFYGDIG 274

Query: 153 SWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLL 212
           S  L +  KL  L LTNN F G   +P    + L +L    N+F G  P  +  + K ++
Sbjct: 275 S-SLSSCGKLSFLNLTNNQFVG--LVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVV 331

Query: 213 VLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFST-----------------PFLT 255
            LD+S N+F G +P S+GE   L ++ +S NNFS                       F+ 
Sbjct: 332 ELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVG 391

Query: 256 G-------CISLWFLDLSDNNFYGQFFS---KDLNLTQMEFLYLENNKFSGKIEEGLLNS 305
           G        + L  LD+S NN  G   S   KD  +  ++ LYL+NN F G I + L N 
Sbjct: 392 GLPDSFSNLLKLETLDMSSNNLTGVIPSGICKD-PMNNLKVLYLQNNLFKGPIPDSLSNC 450

Query: 306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENY 365
           ++L  LD+S N+L+G IP  +G+ S L+ L++  N L G IP +L+  + L+ L +  N 
Sbjct: 451 SQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFND 510

Query: 366 LSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQL 424
           L+G + +S  N + L  + +  N LSG IP  L R S L  L L  N++ G IP ++   
Sbjct: 511 LTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNC 570

Query: 425 RRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDL 484
           + L  +DL+ N  NGSIP                  G +++    G  Y+    + + + 
Sbjct: 571 QSLIWLDLNTNFLNGSIPPPLFKQ-----------SGNIAVALLTGKRYVYIKNDGSKEC 619

Query: 485 EVCKRDM-FTSPQQVKVEFVTK----NRYELYNG---SNLNY---MVGLDLSCNELTGNV 533
                 + F   +Q +++ ++     N   +Y G      N+   M+ LDLS N+L G++
Sbjct: 620 HGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSI 679

Query: 534 PSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSN 593
           P E+G +  +  LNL HN LSG IP+    L+ +  LDLS NR +G IP  L  L  L  
Sbjct: 680 PKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGE 739

Query: 594 FNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDEDD 653
            ++S NNLSG+IP+   + TF +  +  N  LCG  +   C+S  ++ A + +       
Sbjct: 740 IDLSNNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPIPCSSGPKSDANQHQKSHRRQA 798

Query: 654 FVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKR 689
            +   V++   F    +  I GL  I+ I +  R+R
Sbjct: 799 SLAGSVAMGLLFS---LFCIFGLI-IVAIETKKRRR 830

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  225 bits (574), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 213/695 (30%), Positives = 327/695 (47%), Gaps = 67/695 (9%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLT-SLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
           S+LK L++S N L       +   T SL+ LDLSYNN  G      +++   +E+   S 
Sbjct: 160 SNLKSLNLSKNFLDPPGKEMLKGATFSLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSI 219

Query: 97  TNNMLLVKTENFLPTFQLKVLELANCSLN----VVPTFLLHQYDLKYLDLSLNNLVGDFP 152
             N    K    +P    K L   + S N    V P+F     +L++LDLS N   GD  
Sbjct: 220 KGN----KLAGSIPELDFKNLSYLDLSANNFSTVFPSF-KDCSNLQHLDLSSNKFYGDIG 274

Query: 153 SWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLL 212
           S  L +  KL  L LTNN F G   +P    + L +L    N+F G  P  +  + K ++
Sbjct: 275 S-SLSSCGKLSFLNLTNNQFVG--LVPKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVV 331

Query: 213 VLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG 272
            LD+S N+F G +P S+GE   L ++ +S NNFS       L    ++  + LS N F G
Sbjct: 332 ELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVG 391

Query: 273 QFFSKDLNLTQME--------------------------FLYLENNKFSGKIEEGLLNST 306
                  NL ++E                           LYL+NN F G I + L N +
Sbjct: 392 GLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCS 451

Query: 307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYL 366
           +L  LD+S N+L+G IP  +G+ S L+ L++  N L G IP +L+  + L+ L +  N L
Sbjct: 452 QLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDL 511

Query: 367 SGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR 425
           +G + +S  N + L  + +  N LSG IP  L R S L  L L  N++ G IP ++   +
Sbjct: 512 TGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQ 571

Query: 426 RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLE 485
            L  +DL+ N  NGSIP                  G +++    G  Y+    + + +  
Sbjct: 572 SLIWLDLNTNFLNGSIPPPLFKQ-----------SGNIAVALLTGKRYVYIKNDGSKECH 620

Query: 486 VCKRDM-FTSPQQVKVEFVTK----NRYELYNG---SNLNY---MVGLDLSCNELTGNVP 534
                + F   +Q +++ ++     N   +Y G      N+   M+ LDLS N+L G++P
Sbjct: 621 GAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIP 680

Query: 535 SEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNF 594
            E+G +  +  LNL HN LSG IP+    L+ +  LDLS NR +G IP  L  L  L   
Sbjct: 681 KELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEI 740

Query: 595 NVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDEDDF 654
           ++S NNLSG+IP+   + TF +  +  N  LCG  +   C+S  ++ A + +        
Sbjct: 741 DLSNNNLSGMIPESAPFDTFPDYRFANN-SLCGYPLPLPCSSGPKSDANQHQKSHRRQAS 799

Query: 655 VIDMVSLYWSFGASYVTVILGLFAILWINSFWRKR 689
           +   V++   F    +  I GL  I+ I +  R+R
Sbjct: 800 LAGSVAMGLLFS---LFCIFGLI-IVAIETKKRRR 830

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  218 bits (554), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 206/637 (32%), Positives = 300/637 (47%), Gaps = 86/637 (13%)

Query: 26  LSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLAN 85
           LSG  S  +  L  LKVL+++HN LSGS+++++ +L++LE LDLS N+F G  P  SL N
Sbjct: 98  LSGKLSESVAKLDQLKVLNLTHNSLSGSIAASLLNLSNLEVLDLSSNDFSGLFP--SLIN 155

Query: 86  HSKLEVLLL--SSTNNMLLVKTENFLPTFQLKVLELA-NCSLNVVPTFLLHQYDLKYLDL 142
              L VL +  +S + ++     N LP  +++ ++LA N     +P  + +   ++YL L
Sbjct: 156 LPSLRVLNVYENSFHGLIPASLCNNLP--RIREIDLAMNYFDGSIPVGIGNCSSVEYLGL 213

Query: 143 SLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQ 202
           + NNL G  P  + Q  + L VL L NN  +G L     K   L  LD SSN F G +P 
Sbjct: 214 ASNNLSGSIPQELFQL-SNLSVLALQNNRLSGALSSKLGKLSNLGRLDISSNKFSGKIP- 271

Query: 203 DMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWF 262
           D+   L KL      +N F G +P S+   + + +L L  N  S                
Sbjct: 272 DVFLELNKLWYFSAQSNLFNGEMPRSLSNSRSISLLSLRNNTLS---------------- 315

Query: 263 LDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHI 322
                    GQ +     +T +  L L +N FSG I   L N  +L  ++ +       I
Sbjct: 316 ---------GQIYLNCSAMTNLTSLDLASNSFSGSIPSNLPNCLRLKTINFAKIKFIAQI 366

Query: 323 PHWMGNFSNLEIL-LMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSMTS--SFNLSS 378
           P    NF +L  L   +++    +  +++L H + LK L ++ N+    + S  S    +
Sbjct: 367 PESFKNFQSLTSLSFSNSSIQNISSALEILQHCQNLKTLVLTLNFQKEELPSVPSLQFKN 426

Query: 379 LKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN 438
           LK L +    L G +P  L  S  L  LDL  N L G IP  +  L  L  +DLS+N F 
Sbjct: 427 LKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPPWLGSLNSLFYLDLSNNTFI 486

Query: 439 GSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQV 498
           G IP   T                                  +L   V K +    P   
Sbjct: 487 GEIPHSLT----------------------------------SLQSLVSKENAVEEPSPD 512

Query: 499 KVEFVTKNRYELYNGSNLNYMVG------LDLSCNELTGNVPSEIGDLQKIRGLNLSHNC 552
              F  KN     N   L Y         +DLS N L G++  E GDL+++  LNL +N 
Sbjct: 513 FPFFKKKNT----NAGGLQYNQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNN 568

Query: 553 LSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYS 612
           LSG+IP + S +  +E LDLS+N LSG IP  L++L+FLS F+V+YN LSG IP   Q+ 
Sbjct: 569 LSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQ 628

Query: 613 TFDESSYRGNLYLCGPTINKSCNSAEETP---AIKSK 646
           TF  SS+ GN  LCG   +  C+  +++P   A+KSK
Sbjct: 629 TFPNSSFEGNQGLCGEHASP-CHITDQSPHGSAVKSK 664

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  212 bits (540), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 196/624 (31%), Positives = 295/624 (47%), Gaps = 62/624 (9%)

Query: 21  LQVLDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFE 75
           L+VLDLS     G     L  L +L+ L ++ NQL+G +   I+  + L+ L L  N   
Sbjct: 131 LKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLT 190

Query: 76  GPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNV-VPTFLLHQ 134
           G  P + L   S LEV+ +     +             L VL LA  S++  +P+ L   
Sbjct: 191 GSIP-TELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKL 249

Query: 135 YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSN 194
             L+ L +    + G+ PS  L N ++L  LFL  NS +G++     +   L  L    N
Sbjct: 250 KKLETLSIYTTMISGEIPS-DLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQN 308

Query: 195 NFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFL 254
           + +G +P+++G     L ++D+S N   G+IPSS+G +  L    +S N FS    T  +
Sbjct: 309 SLVGGIPEEIGNC-SNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPT-TI 366

Query: 255 TGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDIS 314
           + C SL  L L  N   G   S+   LT++   +  +N+  G I  GL + T L  LD+S
Sbjct: 367 SNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLS 426

Query: 315 HNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF 374
            N L+G IP  +    NL  LL+ +N L G IP ++ N  +L  L +  N ++G + S  
Sbjct: 427 RNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGI 486

Query: 375 -NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLS 433
            +L  +  L    N L G +PD +   S+L  +DL  N+LEG +P+ +  L  L ++D+S
Sbjct: 487 GSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVS 546

Query: 434 HNRFNGSIPSCFTNM--LQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDM 491
            N+F+G IP+    +  L   I + +LF G  SI   LG C       S L L       
Sbjct: 547 ANQFSGKIPASLGRLVSLNKLILSKNLFSG--SIPTSLGMC-------SGLQL------- 590

Query: 492 FTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR-GLNLSH 550
                                         LDL  NEL+G +PSE+GD++ +   LNLS 
Sbjct: 591 ------------------------------LDLGSNELSGEIPSELGDIENLEIALNLSS 620

Query: 551 NCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQ 610
           N L+G IP   ++L  +  LDLS+N L G + A L  +  L + N+SYN+ SG +PD   
Sbjct: 621 NRLTGKIPSKIASLNKLSILDLSHNMLEGDL-APLANIENLVSLNISYNSFSGYLPDNKL 679

Query: 611 YSTFDESSYRGNLYLCGPTINKSC 634
           +         GN  LC  T   SC
Sbjct: 680 FRQLSPQDLEGNKKLCSST-QDSC 702

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  211 bits (538), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 192/631 (30%), Positives = 294/631 (46%), Gaps = 49/631 (7%)

Query: 35  KYLSHLKVLDISHNQLSGSLSSTI-TSLTSLEYLDLSYNNFEGPC-----PLSSLANHSK 88
           KY S+L  + +S+N  +G L + +  S   L+ LDLSYNN  GP      PLSS  + + 
Sbjct: 150 KY-SNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIPLSSCVSMTY 208

Query: 89  LEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLN-VVPTFLLHQYDLKYLDLSLNNL 147
           L+     S N++    +++ +    LK L L+  + +  +P        L+ LDLS N L
Sbjct: 209 LDF----SGNSISGYISDSLINCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRL 264

Query: 148 VGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTI 207
            G  P  +      L+ L L+ N+FTG +    +   +L  LD S+NN  G  P  +   
Sbjct: 265 TGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRS 324

Query: 208 LKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD 267
              L +L +SNN   G+ P+S+   K L I   S N FS         G  SL  L L D
Sbjct: 325 FGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPD 384

Query: 268 NNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMG 327
           N   G+        +++  + L  N  +G I   + N  KL Q    +N ++G IP  +G
Sbjct: 385 NLVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIG 444

Query: 328 NFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFN-LSSLKHLYVQK 386
              NL+ L+++NN L G IP +  N   ++ +S + N L+G +   F  LS L  L +  
Sbjct: 445 KLQNLKDLILNNNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGN 504

Query: 387 NALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFT 446
           N  +G IP  L + + L+ LDL  N+L G+IP ++   R+ G   LS    +G+  +   
Sbjct: 505 NNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLG--RQPGSKALS-GLLSGNTMAFVR 561

Query: 447 NM------LQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKV 500
           N+      +   +E   +    L   P L  C     Y+  +        +FT  Q ++ 
Sbjct: 562 NVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRMYSGPI------LSLFTRYQTIEY 615

Query: 501 EFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRS 560
                                LDLS N+L G +P EIG++  ++ L LSHN LSG IP +
Sbjct: 616 ---------------------LDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFT 654

Query: 561 FSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYR 620
              L+ +   D S+NRL GQIP     L+FL   ++S N L+G IP +GQ ST   + Y 
Sbjct: 655 IGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYA 714

Query: 621 GNLYLCGPTINKSCNSAEETPAIKSKGREDE 651
            N  LCG  + +  N   + PA   +G+  +
Sbjct: 715 NNPGLCGVPLPECKNGNNQLPAGTEEGKRAK 745

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  210 bits (534), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 186/589 (31%), Positives = 290/589 (49%), Gaps = 37/589 (6%)

Query: 137 LKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNF 196
           LK L LS NN  G+  +  L NN  L+ L L++N+ +G +         L HLD + N+F
Sbjct: 103 LKVLSLSNNNFTGNINA--LSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSF 160

Query: 197 IGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTG 256
            GTL  D+      L  L +S+NH EG IPS++     L  L+LS+N FS + S  F++G
Sbjct: 161 SGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCSVLNSLNLSRNRFSGNPS--FVSG 218

Query: 257 C---ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDI 313
                 L  LDLS N+  G      L+L  ++ L L+ N+FSG +   +     L ++D+
Sbjct: 219 IWRLERLRALDLSSNSLSGSIPLGILSLHNLKELQLQRNQFSGALPSDIGLCPHLNRVDL 278

Query: 314 SHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSS 373
           S N  SG +P  +    +L    +SNN L G+ P  + +   L  L  S N L+G + SS
Sbjct: 279 SSNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKLPSS 338

Query: 374 F-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDL 432
             NL SLK L + +N LSG +P+ L    +LM + L+GN+  G IPD    L  L  MD 
Sbjct: 339 ISNLRSLKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIPDGFFDLG-LQEMDF 397

Query: 433 SHNRFNGSIPS----CFTNMLQWTIENVDLFG---GELSIFPPLGFCYIG-TYYNSTLDL 484
           S N   GSIP      F ++++  + +  L G   GE+ +F  + +  +   ++N+ +  
Sbjct: 398 SGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPP 457

Query: 485 EVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR 544
           E+      T         +     ++    +L     L L  N LTG++P  IG+   ++
Sbjct: 458 EIEFLQNLTVLDLRNSALIGSVPADICESQSLQI---LQLDGNSLTGSIPEGIGNCSSLK 514

Query: 545 GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
            L+LSHN L+G IP+S SNLQ ++ L L  N+LSG+IP +L +L  L   NVS+N L G 
Sbjct: 515 LLSLSHNNLTGPIPKSLSNLQELKILKLEANKLSGEIPKELGDLQNLLLVNVSFNRLIGR 574

Query: 605 IPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAI----------------KSKGR 648
           +P    + + D+S+ +GNL +C P +   C      P +                 S G 
Sbjct: 575 LPLGDVFQSLDQSAIQGNLGICSPLLRGPCTLNVPKPLVINPNSYGNGNNMPGNRASGGS 634

Query: 649 EDEDDFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDAL 697
                 +   VS+  +  A+ + +  G+  I  +N+  R+R  +  +AL
Sbjct: 635 GTFHRRMFLSVSVIVAISAA-ILIFSGVIIITLLNASVRRRLAFVDNAL 682

Arabidopsis thaliana (taxid: 3702)

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  209 bits (531), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 206/691 (29%), Positives = 319/691 (46%), Gaps = 97/691 (14%)

Query: 1   YSGSLTNLYIFLTGLA--NLTILQVLDLSGSS------SNCLKYLSHLKVLDISHNQLSG 52
           +S S TN     +G+   N++ +  LDLSG +      +     L  L+ +++S+N LSG
Sbjct: 52  WSYSSTNDVCLWSGVVCNNISRVVSLDLSGKNMSGQILTAATFRLPFLQTINLSNNNLSG 111

Query: 53  SLSSTI--TSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLP 110
            +   I  TS  SL YL+LS NNF G  P   L N   L++     +NNM   +  N + 
Sbjct: 112 PIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGFLPNLYTLDL-----SNNMFTGEIYNDIG 166

Query: 111 TFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN 170
            F                       +L+ LDL  N L G  P + L N ++LE L L +N
Sbjct: 167 VFS----------------------NLRVLDLGGNVLTGHVPGY-LGNLSRLEFLTLASN 203

Query: 171 SFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVG 230
             TG + +   K   L  +    NN  G +P  +G  L  L  LD+  N+  G IP S+G
Sbjct: 204 QLTGGVPVELGKMKNLKWIYLGYNNLSGEIPYQIGG-LSSLNHLDLVYNNLSGPIPPSLG 262

Query: 231 EMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE 290
           ++K+L  + L +N  S     P +    +L  LD SDN+  G+       +  +E L+L 
Sbjct: 263 DLKKLEYMFLYQNKLSGQIP-PSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHLF 321

Query: 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL 350
           +N  +GKI EG+ +  +L  L +  N  SG IP  +G  +NL +L +S N L G +P  L
Sbjct: 322 SNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTL 381

Query: 351 LNHRTLKLLSVSENYLSGSMTSSFNL-SSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLR 409
            +   L  L +  N L   +  S  +  SL+ + +Q N  SG +P    +   +  LDL 
Sbjct: 382 CDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNFLDLS 441

Query: 410 GNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPL 469
            NNL+G I      + +L M+DLS N+F G +P  F+   +  ++ +DL   ++S   P 
Sbjct: 442 NNNLQGNI--NTWDMPQLEMLDLSVNKFFGELPD-FSRSKR--LKKLDLSRNKISGVVPQ 496

Query: 470 GFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNEL 529
           G                    + T P+                      ++ LDLS NE+
Sbjct: 497 G--------------------LMTFPE----------------------IMDLDLSENEI 514

Query: 530 TGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN 589
           TG +P E+   + +  L+LSHN  +G IP SF+  Q++  LDLS N+LSG+IP  L  + 
Sbjct: 515 TGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIE 574

Query: 590 FLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGRE 649
            L   N+S+N L G +P  G +   + ++  GN+ LC      S NSA      K   + 
Sbjct: 575 SLVQVNISHNLLHGSLPFTGAFLAINATAVEGNIDLC------SENSASGLRPCKVVRKR 628

Query: 650 DEDDFVIDMVSLYWSFGASYVTVILGLFAIL 680
               + + + S + +F A  V+   G F +L
Sbjct: 629 STKSWWLIITSTFAAFLAVLVS---GFFIVL 656

Arabidopsis thaliana (taxid: 3702)

>sp|O80809|CLV2_ARATH Leucine-rich repeat receptor-like protein CLAVATA2 OS=Arabidopsis thaliana GN=CLV2 PE=1 SV=1

 Score =  206 bits (525), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 203/647 (31%), Positives = 312/647 (48%), Gaps = 61/647 (9%)

Query: 47  HNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTE 106
           HN  SG++ S   SL +L  L+LS N F G  P ++  +  +L  ++LS   ++  V   
Sbjct: 106 HNNFSGNIPSCFGSLRNLRTLNLSRNRFVGSIP-ATFVSLKELREVVLSENRDLGGVVPH 164

Query: 107 NFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLF 166
            F            N S+N           L+ +D S  + VG+ P   L     L+ L 
Sbjct: 165 WF-----------GNFSMN-----------LERVDFSFCSFVGELPE-SLLYLKSLKYLN 201

Query: 167 LTNNSFTGNLRLPNTKHDF---LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG 223
           L +N+ TG LR      DF   L  L+ +SN F GTLP    +    L +L+I+ N   G
Sbjct: 202 LESNNMTGTLR------DFQQPLVVLNLASNQFSGTLPCFYAS-RPSLSILNIAENSLVG 254

Query: 224 NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ 283
            +PS +G +KEL  L+LS N F+ + S P L     L  LDLS N F G+  S+    T+
Sbjct: 255 GLPSCLGSLKELSHLNLSFNGFNYEIS-PRLMFSEKLVMLDLSHNGFSGRLPSRISETTE 313

Query: 284 ---MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNN 340
              +  L L +N FSG I   +     L  L +SHN L+G IP  +GN + L+++ +S+N
Sbjct: 314 KLGLVLLDLSHNSFSGDIPLRITELKSLQALRLSHNLLTGDIPARIGNLTYLQVIDLSHN 373

Query: 341 CLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFN-LSSLKHLYVQKNALSGPIPDMLFR 399
            L G+IP+ ++    L  L +S N LSG +    + L SLK L +  N +SG IP  L  
Sbjct: 374 ALTGSIPLNIVGCFQLLALMISNNNLSGEIQPELDALDSLKILDISNNHISGEIPLTLAG 433

Query: 400 SSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLF 459
              L  +D+  NNL G + + I +   L  + L+ N+F+G++PS      +  I+ +D  
Sbjct: 434 LKSLEIVDISSNNLSGNLNEAITKWSNLKYLSLARNKFSGTLPSWLFKFDK--IQMIDYS 491

Query: 460 GGELSIFPPLGFCYIGTYYNSTL--DLEVCKRDMFTSPQ---QVKVEFVTKNRYELYNGS 514
               S F P          NST   D +    + F  P    ++K+      + EL    
Sbjct: 492 SNRFSWFIP------DDNLNSTRFKDFQTGGGEGFAEPPGKVEIKISAAVVAKDELSFSY 545

Query: 515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSN 574
           NL  MVG+DLS N L G +P  +   + I  LNLS+N L G +PR    L  +++LDLS+
Sbjct: 546 NLLSMVGIDLSDNLLHGEIPEALFRQKNIEYLNLSYNFLEGQLPR-LEKLPRLKALDLSH 604

Query: 575 NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSC 634
           N LSGQ+   +     L+  N+S+N  SG+I +K     F   +  GN  LC  T    C
Sbjct: 605 NSLSGQVIGNISAPPGLTLLNLSHNCFSGIITEKEGLGKF-PGALAGNPELCVETPGSKC 663

Query: 635 NSAEETPAIKSKGRED--EDDFVIDMVSLYWSFGASYVTVILGLFAI 679
           +     PA     +E+  +++ V   +S++    +++++   G+  I
Sbjct: 664 D-----PANIDASQEEIYQNELVEGPISIWIFCLSAFISFDFGVLGI 705

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Involved in controlling the stem cell population size in shoot and root apical meristems, and during organ development. Promotes the formation of CLV1 multimers.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	700
255553269	2793	receptor-kinase, putative [Ricinus commu	0.92	0.230	0.465	1e-154
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.97	0.636	0.442	1e-149
358345471	933	Receptor kinase [Medicago truncatula] gi	0.984	0.738	0.452	1e-148
238478394	1083	receptor like protein 1 [Arabidopsis tha	0.961	0.621	0.442	1e-147
240254032	1034	receptor like protein 1 [Arabidopsis tha	0.961	0.650	0.442	1e-147
238478392	913	receptor like protein 1 [Arabidopsis tha	0.961	0.737	0.442	1e-147
359483099	1231	PREDICTED: probable LRR receptor-like se	0.961	0.546	0.434	1e-145
359482735	1097	PREDICTED: receptor-like protein 12-like	0.967	0.617	0.434	1e-145
357468861	1016	Receptor-like protein kinase [Medicago t	0.942	0.649	0.441	1e-144
358345693	1011	Receptor-like protein kinase [Medicago t	0.942	0.652	0.441	1e-144

>gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 328/704 (46%), Positives = 446/704 (63%), Gaps = 60/704 (8%)

Query: 9    YIFLTGLANLTIL--QVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEY 66
            ++ L GL +L  L   V   SG    CL  L++L+VLD++ N+ SG++ S ++ LTSL+Y
Sbjct: 1204 FVGLCGLKSLLELGLSVNQFSGPLPQCLSNLTNLQVLDLTSNEFSGNIQSVVSKLTSLKY 1263

Query: 67   LDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTE--NFLPTFQLKVLELANCSL 124
            L LS N FEG    SSLANH KLE+  LSS + ML ++TE   + PTFQLKV++L NC+L
Sbjct: 1264 LFLSGNKFEGLFSFSSLANHKKLEIFELSSGSTMLELETEIPVWFPTFQLKVIDLPNCNL 1323

Query: 125  NV----VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPN 180
            N+    +P+FLL+Q+DL+++DLS NNL+G FPSW+LQNN++LEV+ + NNSFTG  +LP+
Sbjct: 1324 NLRTRRIPSFLLYQHDLQFIDLSHNNLIGAFPSWILQNNSRLEVMNMMNNSFTGTFQLPS 1383

Query: 181  TKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHL 240
             +H+ ++ L  SSN+  G +P+D+G +L  L  L++S N FEGNIPSS+ +M+ L IL L
Sbjct: 1384 YRHELIN-LKISSNSIAGQIPKDIGLLLSNLRYLNMSWNCFEGNIPSSISQMEGLSILDL 1442

Query: 241  SKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEE 300
            S N FS +     L+    L  L LS+NNF G+ F + +NL ++  L + NN FSGKI+ 
Sbjct: 1443 SNNYFSGELPRSLLSNSTYLVALVLSNNNFQGRIFPETMNLEELTVLDMNNNNFSGKIDV 1502

Query: 301  GLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLS 360
                  +L  LDIS N ++G IP                        +QL N  ++++L 
Sbjct: 1503 DFFYCPRLSVLDISKNKVAGVIP------------------------IQLCNLSSVEILD 1538

Query: 361  VSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG----- 415
            +SEN   G+M S FN SSL++L++QKN L+G IP +L RSS L+ +DLR N   G     
Sbjct: 1539 LSENRFFGAMPSCFNASSLRYLFLQKNGLNGLIPHVLSRSSNLVVVDLRNNKFSGNIPSW 1598

Query: 416  -------------------QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENV 456
                                IP+Q+CQLR L +MDLSHN   GSIPSCF N+   ++  V
Sbjct: 1599 ISQLSELHVLLLGGNALGGHIPNQLCQLRNLKIMDLSHNLLCGSIPSCFHNISFGSM--V 1656

Query: 457  DLFGGELSIFPPLGFCYIG-TYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSN 515
            +      SI   +   Y    YY +TL+L++     ++S  +V+VEF+ K RY  Y GS 
Sbjct: 1657 EESFSSSSIGVAMASHYDSYAYYKATLELDLPGLLSWSSSSEVQVEFIMKYRYNSYKGSV 1716

Query: 516  LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN 575
            +N M G+DLS NEL G +PSEIGD+Q+IR LNLS+N LSGSIP SFSNL+ +ESLDL NN
Sbjct: 1717 INLMAGIDLSRNELRGEIPSEIGDIQEIRSLNLSYNHLSGSIPFSFSNLKNLESLDLRNN 1776

Query: 576  RLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCN 635
             LSG+IP QL+ELNFL  F+VSYNNLSG I +KGQ+ TFDESSY+GN  LCG  I++SCN
Sbjct: 1777 SLSGEIPTQLVELNFLGTFDVSYNNLSGRILEKGQFGTFDESSYKGNPELCGDLIHRSCN 1836

Query: 636  SAEETPAIKSKGREDEDDFVIDMVSLYWSFGASYVTVILGLFAI 679
            +   TP   S   ++ED+  IDM   YWSF ASYV      FA+
Sbjct: 1837 TEATTPPSPSPDVDEEDEGPIDMFWFYWSFCASYVIAFEMEFAM 1880

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 321/726 (44%), Positives = 444/726 (61%), Gaps = 47/726 (6%)

Query: 12   LTGLANLTILQVLDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTI-TSLTSLE 65
              G   L  LQ LDLS     G+   CL  L+ L++LD+S N LSG+LSS +  +LTSLE
Sbjct: 330  FVGFCQLNKLQELDLSYNLFQGTLPPCLNNLTSLRLLDLSSNHLSGNLSSPLLPNLTSLE 389

Query: 66   YLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTE---NFLPTFQLKVLELANC 122
            Y+DLSYN+FEG    SS ANHSKL+V++L S NN   V+TE    ++P FQLK L L+NC
Sbjct: 390  YIDLSYNHFEGSFSFSSFANHSKLQVVILGSDNNKFEVETEYPVGWVPLFQLKALFLSNC 449

Query: 123  SLNV-VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNT 181
             L   +P FL +Q+ L+ +DLS NNL G F +W+L+NNT+LE L L NNS  G L LP  
Sbjct: 450  KLTGDIPDFLQYQFKLEVVDLSHNNLTGRFTNWLLENNTRLEFLVLRNNSLMGQL-LPLR 508

Query: 182  KHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLS 241
             +  +  LD S N   G L +++G ++  ++ L++SNN FEG +PSS+ EM  L +L LS
Sbjct: 509  PNTRILSLDISHNQLDGRLQENVGHMIPNIVFLNLSNNGFEGLLPSSIAEMSSLRVLDLS 568

Query: 242  KNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEG 301
             NNFS +     L     L  L LS N F+G+ FS+D N+T ++ LYL+NN+F G +   
Sbjct: 569  ANNFSGEVPKQLL-ATKDLVILKLSYNKFHGEIFSRDFNMTGLDILYLDNNQFMGTLSNV 627

Query: 302  LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV 361
            +  S++L  LD+S+N++SG IP  +GN + L  L+M NN   G +P ++   + +K L V
Sbjct: 628  ISGSSQLMVLDVSNNYMSGEIPSGIGNMTELRTLVMGNNNFRGKLPPEISQLQQMKFLDV 687

Query: 362  SENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQI 421
            S+N LSGS+ S  ++  L+HL++Q N  +G IP     SS L+TLD+R N L G IP+ I
Sbjct: 688  SQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSDLLTLDMRDNRLFGSIPNSI 747

Query: 422  ------------------------CQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVD 457
                                    C L ++ +MDLS+N F+G IP CF ++    ++   
Sbjct: 748  SALLELRILLLRGNLFSGFIPNHLCHLTKISLMDLSNNSFSGPIPKCFGDIRFGEMKK-- 805

Query: 458  LFGGELSIFPP-LGFCYIGTYYNSTLDLEVCKR--DMFTSPQQVKVEFVTKNRYELYNGS 514
                E  +F   + F Y G   N  +   V K   D     ++ +VEFVTKNR++ Y+G 
Sbjct: 806  ----ENDVFRQFIDFGYGGDSRNLYVGFTVKKWEFDSDVYDEKNEVEFVTKNRHDSYSGD 861

Query: 515  NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSN 574
             LN+M GLDLSCN LTG +P ++G L  I  LNLSHN L  SIP+SFSNL  IESLDLS 
Sbjct: 862  ILNFMFGLDLSCNNLTGEIPHKLGKLSWIHALNLSHNQLKDSIPKSFSNLSQIESLDLSY 921

Query: 575  NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQYSTFDESSYRGNLYLCGPTINKS 633
            N+LSG+IP +L+ELNFL  F+V+YNN+SG +PD K Q+ TFDE SY GN +LCG  + + 
Sbjct: 922  NKLSGEIPLELVELNFLEVFSVAYNNISGRVPDTKAQFGTFDERSYEGNPFLCGTLLKRK 981

Query: 634  CNSAEETPAIKSKGREDEDD-FVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFY 692
            CN++ E P   S+  E E   + I+ V  + SF  SY+ ++LG   IL+IN +WR RWF 
Sbjct: 982  CNTSIEPPCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVTILYINPYWRHRWFN 1041

Query: 693  FIDALI 698
            FI+  I
Sbjct: 1042 FIEECI 1047

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 344/760 (45%), Positives = 444/760 (58%), Gaps = 71/760 (9%)

Query: 5   LTNLYIFLTGLANLTILQVLDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTIT 59
           LT   I LTGL  +  LQ LDLS     G    CL+ L+ L+VLD+S N   G++ S I 
Sbjct: 168 LTENKIILTGLCGMKNLQELDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFII 227

Query: 60  SLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTE---NFLPTFQLKV 116
           SL SLEYL L   NF+G    SSL NHSKLEV LLS   N L V+TE   ++ PTFQLKV
Sbjct: 228 SLKSLEYLSLFDTNFDGIFSFSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKV 287

Query: 117 LELANCSLN-----VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNS 171
           L+L NC LN       PTFLL+Q++L+ LDLS N L G+FPSW+L+NNTKLE L+L NNS
Sbjct: 288 LQLRNCFLNSKRDGTFPTFLLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNS 347

Query: 172 FTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGE 231
           FTG L LP  KH  L  L  S+N   G L +D+G I   L  +++S N FEG +PSS+GE
Sbjct: 348 FTGTLELPTFKHGLLD-LQISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGE 406

Query: 232 MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLEN 291
           M+ +  L LS NNFS + S+  ++   SL  L LS N+F+G       NLT++ +LYL N
Sbjct: 407 MQTIRTLDLSNNNFSGELSSHLISNLTSLRLLRLSHNSFHG-LVPLLSNLTRLNWLYLNN 465

Query: 292 NKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLL 351
           N FSG IE+G+ N++ L+ LDIS+N LSG IP W+G F+ L +L +S N L+G IP +L 
Sbjct: 466 NSFSGVIEDGVSNNSSLFSLDISNNMLSGRIPRWIGRFTKLSVLSLSKNRLQGEIPNELC 525

Query: 352 NHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLR- 409
           N  +L  L +SEN LS  +   F N   +K LY+QKNAL G IP    + +KL +LDLR 
Sbjct: 526 NLISLSYLDLSENNLSDFLPYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRD 585

Query: 410 -----------------------GNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFT 446
                                  GN L G IP  +C+L  + +MDLSHN  N +IP C  
Sbjct: 586 NNFFGNIPQWINRLSKLRVLLLAGNKLTGPIPIYVCELEHVRIMDLSHNWINETIPPCIK 645

Query: 447 NMLQWTIE-NVDLFGG-----------ELSIFPPLGFCYI--------------GTYYNS 480
           N+    +E      GG           ++  +      YI                +YNS
Sbjct: 646 NISFKMVEFQTTAVGGRAVQNDNDSKDKIQYYGNTATSYIFLVDDIWFTPGNTFDIFYNS 705

Query: 481 TLDLEVCKRDMF-TSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD 539
           +L L     D +  S + V++EF TK+ Y  Y G+NLN M GLDLS N L+G++P EIG+
Sbjct: 706 SLSLNHPIADEYMISYEIVEIEFRTKSYYLSYKGNNLNLMTGLDLSSNNLSGSIPPEIGE 765

Query: 540 LQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 599
           L+ I+ LNLSHN  SGSIP +F NL  IESLDLS N LSG +P  L  L  L+ FNVSYN
Sbjct: 766 LRDIKALNLSHNRFSGSIPGTFPNLINIESLDLSYNNLSGALPQNLTNLYSLAIFNVSYN 825

Query: 600 NLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDEDDFVIDMV 659
             SG +P   Q++ FDE++YRGN  LCG  IN +CN     P   +   +      IDM 
Sbjct: 826 KFSGRVPTTMQFANFDENNYRGNSDLCGSVINITCNHTSIFPPASTTQHQT----AIDME 881

Query: 660 SLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALIM 699
           S YWS  ASYVTV++GL  ILW+NS W + WF ++D  I 
Sbjct: 882 SFYWSCVASYVTVVIGLAVILWVNSHWCRVWFRYVDLCIF 921

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478394|ref|NP_001154318.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189998|gb|AEE28119.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 323/730 (44%), Positives = 438/730 (60%), Gaps = 57/730 (7%)

Query: 14   GLANLTILQVLDLSGSS----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTS-LEYLD 68
            G+  L  L+ LDLS ++      CL  L+HL+ LD+S+NQL+G+LSS ++ L S LEYL 
Sbjct: 353  GICRLMKLRELDLSSNALTSLPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLS 412

Query: 69   LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTEN-FLPTFQLKVLELANCSL-NV 126
            L  NNF+G    +SL N ++L V  LSS   ++ V+TE+ + P FQLK+L L+NCSL + 
Sbjct: 413  LLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGST 472

Query: 127  VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFL 186
            +  FL+HQ DL ++DLS N L G FP+W+++NNT+L+ + L+ NS T  L+LP   H  L
Sbjct: 473  MLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHG-L 530

Query: 187  HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFS 246
              LD SSN    ++ +D+G +   L  ++ S+NHF+G IPSS+GEMK L +L +S N   
Sbjct: 531  QVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLY 590

Query: 247  EDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNST 306
                  FL+GC SL  L LS+N   G+ FSK  NLT +  L+L+ N F+G +EEGLL S 
Sbjct: 591  GQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSK 650

Query: 307  KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYL 366
             L  LDIS N  SG +P W+G  S L  L MS N L+G  P  L     ++++ +S N  
Sbjct: 651  NLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSF 709

Query: 367  SGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI--------- 417
            SGS+  + N  SL+ L +Q N  +G +P  LF+++ L  LDLR NN  G+I         
Sbjct: 710  SGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSK 769

Query: 418  ---------------PDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGE 462
                           P +ICQL  +G++DLSHN+F G IPSCF+ M          FG E
Sbjct: 770  LRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMS---------FGAE 820

Query: 463  -----LSIFPPLGFCYIG----TYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNG 513
                 +S+     F YI       Y S L+L+   R+ +       V+F+TK+RYE Y G
Sbjct: 821  QNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQG 880

Query: 514  SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS 573
              L YM GLDLS NEL+G +P EIGDLQ IR LNLS N L+GSIP S S L+ +ESLDLS
Sbjct: 881  DILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLS 940

Query: 574  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKS 633
            NN+L G IP  L +LN L   N+SYNNLSG IP KG   TFDE SY GN +LCG   NK+
Sbjct: 941  NNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKN 1000

Query: 634  CNSAE--ETPAIKSKGREDEDDF---VIDMVSLYWSFGASYVTVILGLFAILWINSFWRK 688
            C S    E P++ +  +E+E++    VIDMV  YW+  A Y++  L LFA L+I+S W +
Sbjct: 1001 CISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSR 1060

Query: 689  RWFYFIDALI 698
             WFY +D  +
Sbjct: 1061 EWFYRVDLCV 1070

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254032|ref|NP_172219.5| receptor like protein 1 [Arabidopsis thaliana] gi|332189996|gb|AEE28117.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 323/730 (44%), Positives = 438/730 (60%), Gaps = 57/730 (7%)

Query: 14   GLANLTILQVLDLSGSS----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTS-LEYLD 68
            G+  L  L+ LDLS ++      CL  L+HL+ LD+S+NQL+G+LSS ++ L S LEYL 
Sbjct: 304  GICRLMKLRELDLSSNALTSLPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLS 363

Query: 69   LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTEN-FLPTFQLKVLELANCSL-NV 126
            L  NNF+G    +SL N ++L V  LSS   ++ V+TE+ + P FQLK+L L+NCSL + 
Sbjct: 364  LLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGST 423

Query: 127  VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFL 186
            +  FL+HQ DL ++DLS N L G FP+W+++NNT+L+ + L+ NS T  L+LP   H  L
Sbjct: 424  MLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHG-L 481

Query: 187  HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFS 246
              LD SSN    ++ +D+G +   L  ++ S+NHF+G IPSS+GEMK L +L +S N   
Sbjct: 482  QVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLY 541

Query: 247  EDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNST 306
                  FL+GC SL  L LS+N   G+ FSK  NLT +  L+L+ N F+G +EEGLL S 
Sbjct: 542  GQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSK 601

Query: 307  KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYL 366
             L  LDIS N  SG +P W+G  S L  L MS N L+G  P  L     ++++ +S N  
Sbjct: 602  NLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSF 660

Query: 367  SGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI--------- 417
            SGS+  + N  SL+ L +Q N  +G +P  LF+++ L  LDLR NN  G+I         
Sbjct: 661  SGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSK 720

Query: 418  ---------------PDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGE 462
                           P +ICQL  +G++DLSHN+F G IPSCF+ M          FG E
Sbjct: 721  LRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMS---------FGAE 771

Query: 463  -----LSIFPPLGFCYIG----TYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNG 513
                 +S+     F YI       Y S L+L+   R+ +       V+F+TK+RYE Y G
Sbjct: 772  QNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQG 831

Query: 514  SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS 573
              L YM GLDLS NEL+G +P EIGDLQ IR LNLS N L+GSIP S S L+ +ESLDLS
Sbjct: 832  DILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLS 891

Query: 574  NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKS 633
            NN+L G IP  L +LN L   N+SYNNLSG IP KG   TFDE SY GN +LCG   NK+
Sbjct: 892  NNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKN 951

Query: 634  CNSAE--ETPAIKSKGREDEDDF---VIDMVSLYWSFGASYVTVILGLFAILWINSFWRK 688
            C S    E P++ +  +E+E++    VIDMV  YW+  A Y++  L LFA L+I+S W +
Sbjct: 952  CISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSR 1011

Query: 689  RWFYFIDALI 698
             WFY +D  +
Sbjct: 1012 EWFYRVDLCV 1021

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478392|ref|NP_001154317.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189997|gb|AEE28118.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 323/730 (44%), Positives = 438/730 (60%), Gaps = 57/730 (7%)

Query: 14  GLANLTILQVLDLSGSS----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTS-LEYLD 68
           G+  L  L+ LDLS ++      CL  L+HL+ LD+S+NQL+G+LSS ++ L S LEYL 
Sbjct: 183 GICRLMKLRELDLSSNALTSLPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLS 242

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTEN-FLPTFQLKVLELANCSL-NV 126
           L  NNF+G    +SL N ++L V  LSS   ++ V+TE+ + P FQLK+L L+NCSL + 
Sbjct: 243 LLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGST 302

Query: 127 VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFL 186
           +  FL+HQ DL ++DLS N L G FP+W+++NNT+L+ + L+ NS T  L+LP   H  L
Sbjct: 303 MLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHG-L 360

Query: 187 HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFS 246
             LD SSN    ++ +D+G +   L  ++ S+NHF+G IPSS+GEMK L +L +S N   
Sbjct: 361 QVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLY 420

Query: 247 EDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNST 306
                 FL+GC SL  L LS+N   G+ FSK  NLT +  L+L+ N F+G +EEGLL S 
Sbjct: 421 GQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSK 480

Query: 307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYL 366
            L  LDIS N  SG +P W+G  S L  L MS N L+G  P  L     ++++ +S N  
Sbjct: 481 NLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVEVMDISHNSF 539

Query: 367 SGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI--------- 417
           SGS+  + N  SL+ L +Q N  +G +P  LF+++ L  LDLR NN  G+I         
Sbjct: 540 SGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSK 599

Query: 418 ---------------PDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGE 462
                          P +ICQL  +G++DLSHN+F G IPSCF+ M          FG E
Sbjct: 600 LRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMS---------FGAE 650

Query: 463 -----LSIFPPLGFCYIG----TYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNG 513
                +S+     F YI       Y S L+L+   R+ +       V+F+TK+RYE Y G
Sbjct: 651 QNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQG 710

Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS 573
             L YM GLDLS NEL+G +P EIGDLQ IR LNLS N L+GSIP S S L+ +ESLDLS
Sbjct: 711 DILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLS 770

Query: 574 NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKS 633
           NN+L G IP  L +LN L   N+SYNNLSG IP KG   TFDE SY GN +LCG   NK+
Sbjct: 771 NNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKN 830

Query: 634 CNSAE--ETPAIKSKGREDEDDF---VIDMVSLYWSFGASYVTVILGLFAILWINSFWRK 688
           C S    E P++ +  +E+E++    VIDMV  YW+  A Y++  L LFA L+I+S W +
Sbjct: 831 CISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSR 890

Query: 689 RWFYFIDALI 698
            WFY +D  +
Sbjct: 891 EWFYRVDLCV 900

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 321/738 (43%), Positives = 444/738 (60%), Gaps = 65/738 (8%)

Query: 3    GSLTNLYIFLTGLANLTILQVLDL-----SGSSSNCLKYLSHLKVLDISHNQLSGSLSST 57
            GSL N      G   L  LQ LDL      G    CL  L+ L++LD+SHN  SG++SS+
Sbjct: 306  GSLPN-----QGFCQLNKLQELDLNSNFFQGILPPCLNNLTSLRLLDLSHNLFSGNVSSS 360

Query: 58   ITSLTSL-EYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTE---NFLPTFQ 113
            +    +  EY+DLSYN FEGP   +S ANHS L+V++  S NN   ++TE    ++P FQ
Sbjct: 361  LLPSLTSLEYIDLSYNLFEGPFSFNSFANHSNLQVVIHGSDNNKFEIETEYPVGWVPLFQ 420

Query: 114  LKVLELANCSL-NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
            LKVL L+N  L    P FL +Q+ L  +DLS NNL G FP+W+L+NNT+LE L L NNS 
Sbjct: 421  LKVLVLSNYKLIGDFPGFLRYQFRLTVVDLSHNNLTGSFPNWLLENNTRLEYLVLRNNSL 480

Query: 173  TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM 232
             G L LP   +  +  LD S N  +G L Q++  ++  +  L++SNN FEG +PSS+ EM
Sbjct: 481  MGQL-LPLRPNSRITSLDISDNRLVGELQQNVANMIPNIEHLNLSNNGFEGILPSSIAEM 539

Query: 233  KELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENN 292
              L  L LS N+FS +     L     L FL LS+N F+G+ FS+D NLT +EFL+L+NN
Sbjct: 540  SSLWSLDLSANSFSGEVPKQLLVAK-DLEFLKLSNNKFHGEIFSRDFNLTSLEFLHLDNN 598

Query: 293  KFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN 352
            +F G +   +  S+ L  LD+S+N +SG IP W+GN ++L  L++ NN  +G +P ++  
Sbjct: 599  QFKGTLSNVISRSSWLRVLDVSNNNMSGEIPSWIGNMTDLTTLVLGNNSFKGKLPPEISQ 658

Query: 353  HRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLD----- 407
             + L+ L VS+N LSGS+ S  ++  LKHL++Q N  +G IP     SS L+TLD     
Sbjct: 659  LQRLEFLDVSQNTLSGSLPSLKSIEYLKHLHLQGNMFTGLIPRDFLNSSNLLTLDIRDNR 718

Query: 408  -------------------LRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM 448
                               LRGN L G IP+Q+C L ++ +MDLS+N F+GSIP CF ++
Sbjct: 719  LFGSIPNSISRLLELRIFLLRGNLLSGFIPNQLCHLTKISLMDLSNNNFSGSIPKCFGHI 778

Query: 449  LQWTIENVDLFGGELSIFPPL----GFCYIGTYYNSTLDLEVCKRDMFTSPQQV----KV 500
                      F  E +++ P+     F  I T Y       + K   F++        +V
Sbjct: 779  ------QFGDFKTEHNVYKPMFNPYSFFSIYTGY-------LVKYLFFSTEAHRDEVDEV 825

Query: 501  EFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRS 560
            EFVTKNR   Y G  L++M GLDLSCN LTG +P E+G L  I  LNLSHN L GS+P+S
Sbjct: 826  EFVTKNRSNSYGGGILDFMSGLDLSCNNLTGEIPRELGMLSSILALNLSHNQLKGSVPKS 885

Query: 561  FSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQYSTFDESSY 619
            FS L  IESLDLS N+LSG+IP + I LNFL  FNV++NN+SG +PD K Q+ TF ESSY
Sbjct: 886  FSKLSQIESLDLSYNKLSGEIPPEFIGLNFLEVFNVAHNNISGRVPDMKEQFGTFGESSY 945

Query: 620  RGNLYLCGPTINKSCNSAEETPAIKSKGREDEDD--FVIDMVSLYWSFGASYVTVILGLF 677
              N +LCGP + + CN++ E+P   S+  ++ +   + ID V  + SF ASY+ ++LG  
Sbjct: 946  EDNPFLCGPMLKRKCNTSIESPNSPSQPSQESEAKWYDIDHVVFFASFVASYIMILLGFA 1005

Query: 678  AILWINSFWRKRWFYFID 695
            AIL+IN +WR+RWF FI+
Sbjct: 1006 AILYINPYWRQRWFNFIE 1023

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482735|ref|XP_003632821.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 319/735 (43%), Positives = 440/735 (59%), Gaps = 58/735 (7%)

Query: 13   TGLANLTILQVLDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTI-TSLTSLEY 66
            T    L  LQ LDLS     G    CL   + L++LDIS N  SG+LSS +  +LTSLEY
Sbjct: 352  TRFCQLNKLQELDLSYNLFQGILPPCLNNFTSLRLLDISANLFSGNLSSPLLPNLTSLEY 411

Query: 67   LDLSYNNFEGPCPLSSLANHSKLEVLLLSSTN----------NMLLVKTE---NFLPTFQ 113
            +DLSYN FEG    SS ANHSKL+V++L   N              V+TE    ++P FQ
Sbjct: 412  IDLSYNQFEGSFSFSSFANHSKLQVVILGRDNIKFKEFGRDNKKFEVETEYPVGWVPLFQ 471

Query: 114  LKVLELANCSLNV-VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
            LKVL L++C L   +P FL +Q+ L  +DLS NNL G FP+W+L+NNT+LE+L L NNS 
Sbjct: 472  LKVLSLSSCKLTGDLPGFLQYQFRLVGVDLSHNNLTGSFPNWLLENNTRLEILLLRNNSL 531

Query: 173  TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM 232
             G L LP   +  ++ LD S N   G L +++  ++  +  L++SNN FEG IPSS+ E+
Sbjct: 532  MGQL-LPLGPNTRINSLDISHNQLDGQLQENVAHMIPNITSLNLSNNGFEGIIPSSIAEL 590

Query: 233  KELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENN 292
            + L IL LS NNFS +     L     L  L LS+N F+G+ FS+D NLT +  LYL NN
Sbjct: 591  RALQILDLSTNNFSGEVPKQLLAA-KDLEILKLSNNKFHGEIFSRDFNLTGLLCLYLGNN 649

Query: 293  KFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN 352
            +F+G +   +   + L+ LD+S+N++SG IP W+GN + L  L+M NN  +G +P ++  
Sbjct: 650  QFTGTLSNVISRISWLWVLDVSNNYMSGEIPSWIGNMTLLRTLVMGNNNFKGKLPPEISQ 709

Query: 353  HRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLR--- 409
             + ++ L VS+N LSGS+ S  ++  L+HL++Q N  +G IP     SS L+TLD+R   
Sbjct: 710  LQRMEFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSNLLTLDIRENR 769

Query: 410  ---------------------GNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM 448
                                 GN L G IP+ +C L  + +MDLS+N F+G IP CF ++
Sbjct: 770  LFGSIPNSISALLKLRILLLRGNLLSGFIPNHLCHLTEISLMDLSNNSFSGPIPRCFGHI 829

Query: 449  LQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP---QQVKVEFVTK 505
                 +  D   G+   +  L    +   Y       + K   F SP   ++ +VEFVTK
Sbjct: 830  RFGETKKEDNVFGQFMYWYELNSDLVYAGY-------LVKHWEFLSPTYNEKDEVEFVTK 882

Query: 506  NRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQ 565
            NR++ Y G  L +M GLDLSCN LTG +P E+G L  IR LNLSHN L+GSIP+SFSNL 
Sbjct: 883  NRHDFYRGGILEFMSGLDLSCNNLTGEIPHELGMLSWIRALNLSHNQLNGSIPKSFSNLS 942

Query: 566  MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQYSTFDESSYRGNLY 624
             IESLDLS N+L G+IP +L+ELNFL  F+V+YNN SG +PD K Q+ TFDE SY GN +
Sbjct: 943  QIESLDLSYNKLGGEIPLELVELNFLEVFSVAYNNFSGRVPDTKAQFGTFDERSYEGNPF 1002

Query: 625  LCGPTINKSCNSAEETPAIKSKGREDEDDFV-IDMVSLYWSFGASYVTVILGLFAILWIN 683
            LCG  + + CN++ E+P   S+  E E  +  I+ V  + SF  SY+ ++LG   IL+IN
Sbjct: 1003 LCGELLKRKCNTSIESPCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVIILYIN 1062

Query: 684  SFWRKRWFYFIDALI 698
             +WR RWF FI+  I
Sbjct: 1063 PYWRHRWFNFIEECI 1077

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 321/727 (44%), Positives = 435/727 (59%), Gaps = 67/727 (9%)

Query: 12  LTGLANLTILQVLDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEY 66
           + GL N   L  LD+S         +CL  L++L+VL++S+N  SG+  S I++LTSL Y
Sbjct: 266 MNGLCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAY 325

Query: 67  LDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLL-VKTEN--FLPTFQLKVLELANCS 123
           L    N  +G   LS+LANHS LEVL +SS NN+ + ++TE   + P FQLK L + NC+
Sbjct: 326 LSFYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCN 385

Query: 124 LN-----VVPTFLLHQYDLKYLDLSLNNLVGDFPS-WMLQNNTKLEVLFLTNNSFTGNLR 177
           LN     V+PTFL +QY+L YL LS NN+ G  PS W++ N                   
Sbjct: 386 LNKDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHN------------------- 426

Query: 178 LPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELII 237
                 D + +LD S+NN  G LP+D+G  L  +  L+ S N FEGNIPSS+G+MK+L +
Sbjct: 427 ------DDMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQL 480

Query: 238 LHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGK 297
           L  S+N+FS +      TGC +L +L LS+N  +G    +  N   M  L+L NN FSG 
Sbjct: 481 LDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGT 539

Query: 298 IEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLK 357
           +E+ L N+T+L  L IS+N  SG IP  +G FSN+  LLMS N LEG IP+++ +   L+
Sbjct: 540 LEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQ 599

Query: 358 LLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLR-------- 409
           +L +S+N L+GS+     L+ L+ LY+Q+N LSG IP  L+   +L  LDLR        
Sbjct: 600 ILDLSQNKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKI 659

Query: 410 ----------------GNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTI 453
                           GNN EG+IP Q+C+L+++ +MDLS N  N SIPSCF NML    
Sbjct: 660 PNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMR 719

Query: 454 ENVDLFGGELSIFPPLGFCYIGTYYNSTL--DLEVCKRDMFTSPQQVKVEFVTKNRYELY 511
           + VD      SI           +++S+L  DL + K  +      ++VEF TK+    Y
Sbjct: 720 QYVDAVFDLSSILYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFY 779

Query: 512 NGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLD 571
            G  L  M GLDLSCN+LTG +PS+IGDLQ+IR LNLSHN LSG IP +FSNL  IESLD
Sbjct: 780 KGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLD 839

Query: 572 LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTIN 631
           LS N LSG+IP +L +LNFLS FNVSYNNLSG  P  GQ++ FDE +YRGN  LCGP ++
Sbjct: 840 LSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLS 899

Query: 632 KSCNSAEETPAIKSKGREDEDDFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWF 691
           + C   E  P+ +S   E+E+  V DM++ YWSF ASY+T++L    +L IN  WR  WF
Sbjct: 900 RKCERVEPPPSSQSNDNEEEETGV-DMITFYWSFTASYITILLAFITVLCINPRWRMAWF 958

Query: 692 YFIDALI 698
           Y+I   +
Sbjct: 959 YYISKFM 965

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 321/727 (44%), Positives = 435/727 (59%), Gaps = 67/727 (9%)

Query: 12  LTGLANLTILQVLDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEY 66
           + GL N   L  LD+S         +CL  L++L+VL++S+N  SG+  S I++LTSL Y
Sbjct: 266 MNGLCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAY 325

Query: 67  LDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLL-VKTEN--FLPTFQLKVLELANCS 123
           L    N  +G   LS+LANHS LEVL +SS NN+ + ++TE   + P FQLK L + NC+
Sbjct: 326 LSFYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCN 385

Query: 124 LN-----VVPTFLLHQYDLKYLDLSLNNLVGDFPS-WMLQNNTKLEVLFLTNNSFTGNLR 177
           LN     V+PTFL +QY+L YL LS NN+ G  PS W++ N                   
Sbjct: 386 LNKDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHN------------------- 426

Query: 178 LPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELII 237
                 D + +LD S+NN  G LP+D+G  L  +  L+ S N FEGNIPSS+G+MK+L +
Sbjct: 427 ------DDMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQL 480

Query: 238 LHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGK 297
           L  S+N+FS +      TGC +L +L LS+N  +G    +  N   M  L+L NN FSG 
Sbjct: 481 LDFSQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGT 539

Query: 298 IEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLK 357
           +E+ L N+T+L  L IS+N  SG IP  +G FSN+  LLMS N LEG IP+++ +   L+
Sbjct: 540 LEDVLGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQ 599

Query: 358 LLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLR-------- 409
           +L +S+N L+GS+     L+ L+ LY+Q+N LSG IP  L+   +L  LDLR        
Sbjct: 600 ILDLSQNKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKI 659

Query: 410 ----------------GNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTI 453
                           GNN EG+IP Q+C+L+++ +MDLS N  N SIPSCF NML    
Sbjct: 660 PNWMDKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMR 719

Query: 454 ENVDLFGGELSIFPPLGFCYIGTYYNSTL--DLEVCKRDMFTSPQQVKVEFVTKNRYELY 511
           + VD      SI           +++S+L  DL + K  +      ++VEF TK+    Y
Sbjct: 720 QYVDAVFDLSSILYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFY 779

Query: 512 NGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLD 571
            G  L  M GLDLSCN+LTG +PS+IGDLQ+IR LNLSHN LSG IP +FSNL  IESLD
Sbjct: 780 KGKVLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLD 839

Query: 572 LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTIN 631
           LS N LSG+IP +L +LNFLS FNVSYNNLSG  P  GQ++ FDE +YRGN  LCGP ++
Sbjct: 840 LSYNDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLS 899

Query: 632 KSCNSAEETPAIKSKGREDEDDFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWF 691
           + C   E  P+ +S   E+E+  V DM++ YWSF ASY+T++L    +L IN  WR  WF
Sbjct: 900 RKCERVEPPPSSQSNDNEEEETGV-DMITFYWSFTASYITILLAFITVLCINPRWRMAWF 958

Query: 692 YFIDALI 698
           Y+I   +
Sbjct: 959 YYISKFM 965

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	700
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.978	0.754	0.410	2.8e-130
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.944	0.661	0.364	7.6e-96
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.948	0.688	0.376	3.9e-92
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.845	0.664	0.395	1.9e-90
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.934	0.699	0.366	3.1e-90
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.957	0.686	0.348	1.1e-89
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.965	0.624	0.364	1.4e-89
TAIR|locus:2091353	1016	AT3G28040 [Arabidopsis thalian	0.712	0.491	0.335	8.2e-62
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.927	0.827	0.300	2.7e-61
TAIR|locus:2206245	720	CLV2 "clavata 2" [Arabidopsis	0.834	0.811	0.327	5.5e-61

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1278 (454.9 bits), Expect = 2.8e-130, P = 2.8e-130
 Identities = 290/706 (41%), Positives = 412/706 (58%)

Query:     1 YSGSLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQXXXXXXXXXXX 60
             YS     ++  +  L  L  L+ ++  G    C   L+ L+ LD+S NQ           
Sbjct:   208 YSSMEWQVFCEMKNLQELD-LRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSS 266

Query:    61 XXXXEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTEN-FLPTFQLKVLEL 119
                 EYL LS N+FEG   L+ L N +KL+V + SS ++M+ VK E+ + P FQL VL L
Sbjct:   267 LESLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVL 326

Query:   120 ANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLP 179
               CSL  +P FL++Q +L  +DLS N + G  P+W+L+NN +LEVL L NNSFT   ++P
Sbjct:   327 RLCSLEKIPNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMP 385

Query:   180 NTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILH 239
              + H+ L  LD S NN  G  P + G +L  L+ ++ SNN F+GN PSS+GEM  +  L 
Sbjct:   386 TSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLD 444

Query:   240 LSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIE 299
             LS NN S +    F++ C SL  L LS N F G F  +  N T +  L + NN F+GKI 
Sbjct:   445 LSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIG 504

Query:   300 EGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTL-KL 358
              GLL    L  LD+S+NFL G +P  +  F  L  L +S N L G +P    +H +L  +
Sbjct:   505 VGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP----SHVSLDNV 560

Query:   359 LSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIP 418
             L +  N  +G +  +F L S++ L ++ N LSG IP  +  +  +  L LRGN+L G IP
Sbjct:   561 LFLHNNNFTGPIPDTF-LGSIQILDLRNNKLSGNIPQFV-DTQDISFLLLRGNSLTGYIP 618

Query:   419 DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYY 478
               +C+  ++ ++DLS N+ NG IPSCF N+        ++    +++   L   Y+G +Y
Sbjct:   619 STLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYYVAV--ALESFYLG-FY 675

Query:   479 NSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGS------NLNYMVGLDLSCNELTGN 532
              ST  +E  + D +++  ++ V+F TK RY+ Y G+       LN M GLDLS NEL+G 
Sbjct:   676 KSTFVVENFRLD-YSNYFEIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGV 734

Query:   533 VPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLS 592
             +P+E+GDL K+R LNLSHN LS  IP SFS LQ IESLDLS N L G IP QL  L  L+
Sbjct:   735 IPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLA 794

Query:   593 NFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDED 652
              FNVSYNNLSG+IP   Q++TFDE+SY GN  LCGP  + SC + + +    + G ED+ 
Sbjct:   795 IFNVSYNNLSGIIPQGKQFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDK 854

Query:   653 DFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALI 698
             +  IDM+  YWS   +YVT ++G+  ++ ++  WR+ W   +DA I
Sbjct:   855 EVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFI 900

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
 Identities = 256/702 (36%), Positives = 370/702 (52%)

Query:    26 LSGSSSNCLKYLSHLKVLDISHNQXXXXXXXXXXXXXXXEYLDLSYNNFEGPCPLSSLAN 85
             L+G    CL  L+ L+VLD+S NQ               EYL L  NNFEG   L  LAN
Sbjct:   270 LAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGLLAN 329

Query:    86 HSKLEVLLLSSTNNMLLVKTE-NFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSL 144
              SKL+VL L S +N L V+ E ++ P FQL V+ L +C+L  VP FLLHQ DL ++DLS 
Sbjct:   330 LSKLKVLRLDSQSNSLEVEFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSD 389

Query:   145 NNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDM 204
             N + G+FPSW+L+NNTKLEVL L NNSFT + +LP + H+ L  L+ S N F     Q+ 
Sbjct:   390 NQIHGNFPSWLLENNTKLEVLLLQNNSFT-SFQLPKSAHNLLF-LNVSVNKFNHLFLQNF 447

Query:   205 GTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLD 264
             G IL  L+ ++++ N F+GN+PSS+  MK +  L LS N F       FL GC +L  L 
Sbjct:   448 GWILPHLVCVNLAYNGFQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILK 507

Query:   265 LSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPH 324
             LS N   G+ F +  N T++  + ++NN F+G I +G  +   L  LDIS+N L+G IP 
Sbjct:   508 LSHNKLSGEVFPEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPS 567

Query:   325 WMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKH--- 381
             W+G    L  L +SNN LEG IP  L N   L+LL +S N LSG +    ++SS+ H   
Sbjct:   568 WIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPP--HVSSIYHGAV 625

Query:   382 LYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSI 441
             L +Q N LSG IPD L  +  ++ LDLR N L G +P+ I   + + ++ L  N F G I
Sbjct:   626 LLLQNNNLSGVIPDTLLLN--VIVLDLRNNRLSGNLPEFI-NTQNISILLLRGNNFTGQI 682

Query:   442 PSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVK-- 499
             P  F ++    I+ +DL   + +   P   C   T +      +  + D+ +     K  
Sbjct:   683 PHQFCSLSN--IQLLDLSNNKFNGSIPS--CLSNTSFGLRKGDDSYRYDVPSRFGTAKDP 738

Query:   500 VEFVTKNRYELYNGSN-LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIP 558
             V F +    + +N  N  N    ++ +            G+L+ + G++LS N LSG IP
Sbjct:   739 VYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMG--GNLKLLFGMDLSENELSGEIP 796

Query:   559 RSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP----DKGQYSTF 614
                  L  +E+L+LS+N LSG I      L  + + ++S+N L G IP    D    + F
Sbjct:   797 VELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVF 856

Query:   615 DES---------------SYRGNLYLCGPTI-NKSCN-SAEETPAIKSKGREDEDDFVID 657
             + S               ++    Y   P +  KS + S        +    + D+  +D
Sbjct:   857 NVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGKSIDISCASNNFHPTDNGVEADESTVD 916

Query:   658 MVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALIM 699
             M S YWSF A+YVT++LG+ A L  +S W + WFY +DA ++
Sbjct:   917 MESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVDAFVL 958

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 269/714 (37%), Positives = 384/714 (53%)

Query:    15 LANLTILQVLDLS-----GSSSNCLKYLSHLKVLDISHNQXXXXXXXXXXXXXXX-EYLD 68
             L +LT L+VLDLS     G+  + L  L  L+ L +  N                   L 
Sbjct:   264 LTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLK 323

Query:    69 L-SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFL-PTFQLKVLELANCSLN- 125
             L S ++       SS     +L V+ L S N   + K  +FL     L+ ++L++ +++ 
Sbjct:   324 LCSKSSSLQVLSESSWKPKFQLSVIALRSCN---MEKVPHFLLHQKDLRHVDLSDNNISG 380

Query:   126 VVPTFLL-HQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLP-NTKH 183
              +P++LL +   LK L L  NNL   F S+ +  +    +LFL  ++   N   P N   
Sbjct:   381 KLPSWLLANNTKLKVLLLQ-NNL---FTSFQIPKSAH-NLLFLDVSANDFNHLFPENIGW 435

Query:   184 DFLH--HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSS-VGEMKELIILHL 240
              F H  +L+ S NNF   LP  +G  +  +  +D+S N F GN+P S V     + IL L
Sbjct:   436 IFPHLRYLNTSKNNFQENLPSSLGN-MNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKL 494

Query:   241 SKNNFS-EDF--STPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGK 297
             S N  S E F  ST F T  + L F+D  +N F G+      +L  +E L + NN  +G 
Sbjct:   495 SHNKLSGEIFPESTNF-TNILGL-FMD--NNLFTGKIGQGLRSLINLELLDMSNNNLTGV 550

Query:   298 IEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLK 357
             I   +     L  L IS NFL G IP  + N S+L++L +S N L G IP Q  +   + 
Sbjct:   551 IPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVV 610

Query:   358 LLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI 417
             LL + +N LSG++  +  L++++ L ++ N  SG IP+ +     +  L LRGNN  GQI
Sbjct:   611 LL-LQDNKLSGTIPDTL-LANVEILDLRNNRFSGKIPEFI-NIQNISILLLRGNNFTGQI 667

Query:   418 PDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSI-FPP---LGFCY 473
             P Q+C L  + ++DLS+NR NG+IPSC +N      +    +  +  I FP     GF  
Sbjct:   668 PHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSL 727

Query:   474 I---------GTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDL 524
                       G Y+ S L L+    D + +  Q K+EF TK+RY+ Y G NL  + G+DL
Sbjct:   728 HQDFSSNKNGGIYFKSLLTLDPLSMD-YKAATQTKIEFATKHRYDAYMGGNLKLLFGMDL 786

Query:   525 SCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQ 584
             S NEL+G +P E G L ++R LNLSHN LSG IP+S S+++ +ES DLS NRL G+IP+Q
Sbjct:   787 SENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQ 846

Query:   585 LIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIK 644
             L EL  LS F VS+NNLSG+IP   Q++TFD  SY GN  LCG   N+SCN+     A  
Sbjct:   847 LTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNNNSYEEA-- 904

Query:   645 SKGREDEDDFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALI 698
               G E  D+ +IDMVS Y SF A+YVT+++G+ A L  +S W + WFY +DA I
Sbjct:   905 DNGVE-ADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 247/624 (39%), Positives = 346/624 (55%)

Query:    87 SKLEVLLLSSTNNMLLVKTENFLPTFQ-LKVLELANCSLN-VVPTFLL-HQYDLKYLDLS 143
             S+L  ++LS  N   L K   FL   Q L+V++L+N  L+ V PT+LL +  +L+ L L 
Sbjct:   278 SQLSSIMLSHCN---LGKIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQ 334

Query:   144 LNNLVGDFPSWMLQNNTK-LEVLFLTNNSFTGNLRLPNTKHDFL---HHLDASSNNFIGT 199
              NN    F +  L    + L++L L+ N+F  N +LP      L    HL+ S+N F+G 
Sbjct:   335 -NN---SFKTLTLPRTMRRLQILDLSVNNF--NNQLPKDVGLILASLRHLNLSNNEFLGN 388

Query:   200 LPQDMGTILKKLLVLDISNNHFEGNIPSSVGE-MKELIILHLSKNNFSEDFSTPFLTGCI 258
             +P  M   ++ +  +D+S N+F G +P ++      L  L LS N FS        +   
Sbjct:   389 MPSSMAR-MENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKS-SDET 446

Query:   259 SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFL 318
             SL  L + +N F G+     LNL  +  + L NN  +G I   L N   L  L IS+N L
Sbjct:   447 SLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRL 505

Query:   319 SGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSS 378
              G IP  + N   L +L +S N L G++P++  +     +L +  N L+GS+  +     
Sbjct:   506 QGAIPPSLFNIPYLWLLDLSGNFLSGSLPLRSSSDYGY-ILDLHNNNLTGSIPDTL-WYG 563

Query:   379 LKHLYVQKNALSGPIPDMLFRSS-KLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRF 437
             L+ L ++ N LSG IP  LFRS+  +  + LR NNL G+IP ++C L  + M+D +HNR 
Sbjct:   564 LRLLDLRNNKLSGNIP--LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRL 621

Query:   438 NGSIPSCFTNMLQWT--IENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP 495
             N SIPSC TN+   +    N D      S+       Y   YY S +  +    D ++  
Sbjct:   622 NESIPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLD-YSVD 680

Query:   496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSG 555
               V+VEF  K RY+LY    LN M GLDLS NEL+GN+P E+GDL+++R LNLS N LSG
Sbjct:   681 FNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSG 740

Query:   556 SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFD 615
             SIP SFSNL+ IESLDLS N+L G IP+QL  L  L  FNVSYNNLSG+IP   Q++TF 
Sbjct:   741 SIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFG 800

Query:   616 ESSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDEDDF-VIDMVSLYWSFGASYVTVIL 674
             E SY GN  LCG    +SC     T     K  ED+D+  ++D+V L+WS G +YVTV++
Sbjct:   801 EKSYLGNFLLCGSPTKRSCGG---TTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMM 857

Query:   675 GLFAILWINSFWRKRWFYFIDALI 698
             G    L  +S WR+ WF  +D  I
Sbjct:   858 GFLVFLCFDSPWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 258/704 (36%), Positives = 376/704 (53%)

Query:    21 LQVLDLSGSS-----SNCLKYLSHLKVLDISHNQXXXXXXXXXXXXXXXEYLDLSYNNFE 75
             L+ LDL G+        CL  L  L+VLD+S NQ               EYL LS NNF+
Sbjct:   248 LRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDNNFD 307

Query:    76 GPCPLSSLANHSKLE-VLLLSSTNNMLLVKTENFLPTFQ--LKVLELANCSLNV-VPTFL 131
             G   L+ L N + L+ V++L   +   L K  +FL  +Q  L++++L++ +L+  +PT+L
Sbjct:   308 GSFSLNPLTNLTNLKFVVVLRFCS---LEKIPSFL-LYQKKLRLVDLSSNNLSGNIPTWL 363

Query:   132 L-HQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVL-FLTNN--SFTGNL--RLPNTKHDF 185
             L +  +L+ L L  NN    FP   + +N  L++  F  NN   F   +   LPN     
Sbjct:   364 LTNNPELEVLQLQ-NNSFTIFPIPTMVHN--LQIFDFSANNIGKFPDKMDHALPN----- 415

Query:   186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSS-VGEMKELIILHLSKNN 244
             L  L+ S+N F G  P  +G  +K +  LD+S N+F G +P S V     ++ L LS N 
Sbjct:   416 LVRLNGSNNGFQGYFPTSIGE-MKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNK 474

Query:   245 FSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLN 304
             FS  F  P  T   SL  L + +N F G       N T +  L + NN  SG I   L  
Sbjct:   475 FSGRF-LPRETNFPSLDVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFE 533

Query:   305 STKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSEN 364
                L  + IS+NFL G IP  +     L  L +S N   G +P  + +   + +   + N
Sbjct:   534 FPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIYMFLHNNN 593

Query:   365 YLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQL 424
             + +G +  +  L S++ L ++ N LSG IP      S +  L L+GNNL G IP ++C L
Sbjct:   594 F-TGPIPDTL-LKSVQILDLRNNKLSGSIPQFDDTQS-INILLLKGNNLTGSIPRELCDL 650

Query:   425 RRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGT---YYNST 481
               + ++DLS N+ NG IPSC +N+    ++  D     L+I PP  F         Y ST
Sbjct:   651 SNVRLLDLSDNKLNGVIPSCLSNLSFGRLQE-DAMA--LNI-PP-SFLQTSLEMELYKST 705

Query:   482 LDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSN------LNYMVGLDLSCNELTGNVPS 535
               ++  + D  T  Q+ +++F  K RY+ Y+G +      L  M G+DLS NEL+G +P+
Sbjct:   706 FLVDKIEVDRSTY-QETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPT 764

Query:   536 EIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN 595
             E+GDL K+R LNLSHN L GSIP SFS L  +ESLDLS+N L G IP  L  L  L+ F+
Sbjct:   765 ELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFD 824

Query:   596 VSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDEDD-F 654
             VS NNLSG+IP   Q++TF+E SY GN  LCGP  ++SC +  ++P     G+E+EDD  
Sbjct:   825 VSSNNLSGIIPQGRQFNTFEEESYLGNPLLCGPPTSRSCET-NKSPEEADNGQEEEDDKA 883

Query:   655 VIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALI 698
              IDM+  Y+S  + YVT ++G+  ++  +  WR+ W   +DA I
Sbjct:   884 AIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFI 927

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
 Identities = 245/703 (34%), Positives = 366/703 (52%)

Query:    15 LANLTILQVLDLSGS--SSNC---LKYLSHLKVLDISHNQXXXXXXXX-XXXXXXXEYLD 68
             L NL  L+VLDLS +  S N       L  L+ L +S N                 +   
Sbjct:   280 LGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKVFR 339

Query:    69 LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQ--LKVLELANCSLNV 126
             LS  +      + + +N      L +++     L K  NFL  +Q  L++++L++  L+ 
Sbjct:   340 LSSTS--EMLQVETESNWLPKFQLTVAALPFCSLGKIPNFL-VYQTNLRLVDLSSNRLSG 396

Query:   127 -VPTFLLHQY-DLKYLDLSLNNL-VGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKH 183
              +PT+LL    +LK L L  N+  +   P+ +     KL+VL  + N  TG L   N  H
Sbjct:   397 DIPTWLLENNPELKVLQLKNNSFTIFQIPTIV----HKLQVLDFSANDITGVLP-DNIGH 451

Query:   184 DF--LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-GEMKELIILHL 240
                 L H++ S N F G LP  MG  +  +  LD+S N+F G +P S+      LI L L
Sbjct:   452 VLPRLLHMNGSHNGFQGNLPSSMGE-MNDISFLDLSYNNFSGELPRSLLTGCFSLITLQL 510

Query:   241 SKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEE 300
             S N+FS     P  T   SL  L + +N F G+       L  +      NN+ +G I  
Sbjct:   511 SHNSFSGPI-LPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISS 569

Query:   301 GLL-NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLL 359
              +  +S+ L  L +S+N L G +P  +    +L  L +S N L G++P  ++N      +
Sbjct:   570 SIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIKI 629

Query:   360 SVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPD 419
              +  N  +G +  +  L +   L ++ N LSG IP  +  + K++TL LRGNNL G IP 
Sbjct:   630 FLHNNSFTGPLPVTL-LENAYILDLRNNKLSGSIPQFV-NTGKMITLLLRGNNLTGSIPR 687

Query:   420 QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYN 479
             ++C L  + ++DLS N+ NG IP C  ++     E + L G    I    G      +Y 
Sbjct:   688 KLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEI--SFGDSLQMEFYR 745

Query:   480 STLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD 539
             ST  ++       ++   V++EF  K RY+ ++G  L+YM GLDLS NEL+G +P+E+GD
Sbjct:   746 STFLVDEFMLYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGD 805

Query:   540 LQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 599
             L K+R LNLS N LS SIP +FS L+ IESLDLS N L G IP QL  L  L+ FNVS+N
Sbjct:   806 LSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFN 865

Query:   600 NLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGRE----DEDDFV 655
             NLSG+IP  GQ++TF+++SY GN  LCG   ++SC   + T    + G E    D+D+  
Sbjct:   866 NLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAA 925

Query:   656 IDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYFIDALI 698
             IDMV LYW+ G++Y   ++G+  ++  +  WR+ W   +DA I
Sbjct:   926 IDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFI 968

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 264/725 (36%), Positives = 391/725 (53%)

Query:     2 SGSLTNL-YIFLTGLANLTILQVLDLSGS--SSNCLKYLSHL-KVLD----ISHNQXXXX 53
             S +LT+L Y     L NLT L+ LDLS +  + N   ++S L  VL+    + +N     
Sbjct:   367 SNALTSLPYC----LGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGSF 422

Query:    54 XXXXXXXXXXXEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTE-NFLPTF 112
                            LS     G   + + ++ + L  L +   +N  L  T   FL   
Sbjct:   423 LFNSLVNQTRLTVFKLSSK--VGVIQVQTESSWAPLFQLKMLYLSNCSLGSTMLGFLVHQ 480

Query:   113 Q-LKVLELANCSLN-VVPTFLL-HQYDLKYLDLSLNNLVG-DFPSWMLQNNTKLEVLFLT 168
             + L  ++L++  L    PT+L+ +   L+ + LS N+L     P  +L +   L+VL ++
Sbjct:   481 RDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLTKLQLP--ILVHG--LQVLDIS 536

Query:   169 NNSFTGNLRLP-NTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPS 227
             +N    +++         L  ++ SSN+F GT+P  +G  +K L VLD+S+N   G +P 
Sbjct:   537 SNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGE-MKSLQVLDMSSNGLYGQLPI 595

Query:   228 S-VGEMKELIILHLSKNNFS-EDFSTPF-LTGCISLWFLDLSDNNFYGQFFSKDLNLTQM 284
               +     L +L LS N    + FS    LTG + L FLD   NNF G      L    +
Sbjct:   596 MFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGL-FLD--GNNFTGSLEEGLLKSKNL 652

Query:   285 EFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG 344
               L + +N+FSG +   +   ++L  L +S N L G  P ++     +E++ +S+N   G
Sbjct:   653 TLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFP-FLRQSPWVEVMDISHNSFSG 711

Query:   345 NIPVQLLNHRTLKLLSVSENYLSGSMTSS-FNLSSLKHLYVQKNALSGPIPDMLFRSSKL 403
             +IP + +N  +L+ L +  N  +G +  + F  + L+ L ++ N  SG I + + ++SKL
Sbjct:   712 SIP-RNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKL 770

Query:   404 MTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL 463
               L LR N+ +  IP +ICQL  +G++DLSHN+F G IPSCF+ M  +  E  D     +
Sbjct:   771 RILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKM-SFGAEQNDR---TM 826

Query:   464 SIFPPLGFCYIGTY-----YNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNY 518
             S+     F YI T+     Y S L+L+   R+ +       V+F+TK+RYE Y G  L Y
Sbjct:   827 SLVADFDFSYI-TFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRY 885

Query:   519 MVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS 578
             M GLDLS NEL+G +P EIGDLQ IR LNLS N L+GSIP S S L+ +ESLDLSNN+L 
Sbjct:   886 MHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLD 945

Query:   579 GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAE 638
             G IP  L +LN L   N+SYNNLSG IP KG   TFDE SY GN +LCG   NK+C S  
Sbjct:   946 GSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCISQR 1005

Query:   639 --ETPAIKSKGREDEDDF---VIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWFYF 693
               E P++ +  +E+E++    VIDMV  YW+  A Y++  L LFA L+I+S W + WFY 
Sbjct:  1006 VPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREWFYR 1065

Query:   694 IDALI 698
             +D  +
Sbjct:  1066 VDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2091353 AT3G28040 [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 8.2e-62, P = 8.2e-62
 Identities = 174/519 (33%), Positives = 266/519 (51%)

Query:   137 LKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNF 196
             LK L LS NN  G+  +  L NN  L+ L L++N+ +G +         L HLD + N+F
Sbjct:   103 LKVLSLSNNNFTGNINA--LSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSF 160

Query:   197 IGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTG 256
              GTL  D+      L  L +S+NH EG IPS++     L  L+LS+N FS + S  F++G
Sbjct:   161 SGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCSVLNSLNLSRNRFSGNPS--FVSG 218

Query:   257 CISLW---FLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDI 313
                L     LDLS N+  G      L+L  ++ L L+ N+FSG +   +     L ++D+
Sbjct:   219 IWRLERLRALDLSSNSLSGSIPLGILSLHNLKELQLQRNQFSGALPSDIGLCPHLNRVDL 278

Query:   314 SHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSS 373
             S N  SG +P  +    +L    +SNN L G+ P  + +   L  L  S N L+G + SS
Sbjct:   279 SSNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKLPSS 338

Query:   374 F-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDL 432
               NL SLK L + +N LSG +P+ L    +LM + L+GN+  G IPD    L  L  MD 
Sbjct:   339 ISNLRSLKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIPDGFFDLG-LQEMDF 397

Query:   433 SHNRFNGSIPS----CFTNMLQWTIENVDLFG---GELSIFPPLGFCYIG-TYYNSTLDL 484
             S N   GSIP      F ++++  + +  L G   GE+ +F  + +  +   ++N+ +  
Sbjct:   398 SGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPP 457

Query:   485 EVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR 544
             E+      T         +     ++    +L     L L  N LTG++P  IG+   ++
Sbjct:   458 EIEFLQNLTVLDLRNSALIGSVPADICESQSLQI---LQLDGNSLTGSIPEGIGNCSSLK 514

Query:   545 GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
              L+LSHN L+G IP+S SNLQ ++ L L  N+LSG+IP +L +L  L   NVS+N L G 
Sbjct:   515 LLSLSHNNLTGPIPKSLSNLQELKILKLEANKLSGEIPKELGDLQNLLLVNVSFNRLIGR 574

Query:   605 IPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAI 643
             +P    + + D+S+ +GNL +C P +   C      P +
Sbjct:   575 LPLGDVFQSLDQSAIQGNLGICSPLLRGPCTLNVPKPLV 613

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 211/701 (30%), Positives = 339/701 (48%)

Query:    15 LANLTILQV--LDLSGSSSNCLKYLSHLKVLDISHNQXXXXXXXXXXXXXXXEYLDLSYN 72
             L +LT L +   +L G   + ++ LSHL  LD+S N                EY+DL  N
Sbjct:   109 LQHLTHLDLSNCNLQGEIPSSIENLSHLTHLDLSTNHLVGEVPASIGNLNQLEYIDLRGN 168

Query:    73 NFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTF-- 130
             +  G  P +S AN +KL +L L   NN     T   +    L  L + + S N   +F  
Sbjct:   169 HLRGNIP-TSFANLTKLSLLDLHE-NNF----TGGDIVLSNLTSLAILDLSSNHFKSFFS 222

Query:   131 --LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF-LH 187
               L   ++L+ +  + N+ VG FP+ +L+ ++ L+ + L+ N F G +   NT     L 
Sbjct:   223 ADLSGLHNLEQIFGNENSFVGLFPASLLKISS-LDKIQLSQNQFEGPIDFGNTSSSSRLT 281

Query:   188 HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSE 247
              LD S NNFIG +P  +  ++  L +LD+S+N+F G  P S+ ++  L  L +S N    
Sbjct:   282 MLDISHNNFIGRVPSSLSKLVN-LELLDLSHNNFRGLSPRSISKLVNLTSLDISYNKL-- 338

Query:   248 DFSTP-FLTGCISLWFLDLSDNNFYGQFFSKDL-NLTQMEFLYLENNKFSGKIEEGLLNS 305
             +   P F+    +L  +DLS N+F+    S ++ N  ++  L L +N   G I + + N 
Sbjct:   339 EGQVPYFIWKPSNLQSVDLSHNSFFDLGKSVEVVNGAKLVGLNLGSNSLQGPIPQWICNF 398

Query:   306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENY 365
               ++ LD+S N  +G IP  + N ++   L + NN L G +P   ++   L+ L VS N 
Sbjct:   399 RFVFFLDLSDNRFTGSIPQCLKNSTDFNTLNLRNNSLSGFLPELCMDSTMLRSLDVSYNN 458

Query:   366 LSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQL 424
               G +  S  N   ++ L V+ N +    P  L     LM L LR N   G + +    L
Sbjct:   459 FVGKLPKSLMNCQDMEFLNVRGNKIKDTFPFWLGSRKSLMVLVLRSNAFYGPVYNSTTYL 518

Query:   425 R--RLGMMDLSHNRFNGSIPS-CFTNMLQ----WTIENVDLFGGELSI---FPPLGFCYI 474
                RL ++D+S+N F GS+P   F N  +    W I  ++      S    +  L     
Sbjct:   519 GFPRLSIIDISNNDFVGSLPQDYFANWTEMATVWDINRLNYARNTSSRTIQYGGLQTIQR 578

Query:   475 GTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVP 534
               Y     ++     D+  + + V  +F   NR  ++ G  +     +D S N  +G++P
Sbjct:   579 SNYVGDNFNMHADSMDL--AYKGVDTDF---NR--IFRGFKV-----IDFSGNRFSGHIP 626

Query:   535 SEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNF 594
               IG L ++  LNLS N  +G+IP S +N+  +E+LDLS N LSG+IP  L  L+FLSN 
Sbjct:   627 RSIGLLSELLHLNLSGNAFTGNIPPSLANITNLETLDLSRNNLSGEIPRSLGNLSFLSNI 686

Query:   595 NVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSK---GREDE 651
             N S+N+L G +P   Q+ T + SS+ GN  L G  +++ C  +   P   S+   G   E
Sbjct:   687 NFSHNHLQGFVPRSTQFGTQNCSSFVGNPGLYG--LDEICRESHHVPVPTSQQHDGSSSE 744

Query:   652 -DDFVIDMVSLYWSFGASYVTVILGLFAILWINSFWRKRWF 691
              ++ V++ ++   +FG     V  G F I  I + ++  WF
Sbjct:   745 LEEPVLNWIAAAIAFGPG---VFCG-FVIGHIFTSYKHLWF 781

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2206245 CLV2 "clavata 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 207/632 (32%), Positives = 314/632 (49%)

Query:    67 LDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELA-NCSLN 125
             LDLS+NNF G  P S   +   L  L LS  N  +      F+   +L+ + L+ N  L 
Sbjct:   102 LDLSHNNFSGNIP-SCFGSLRNLRTLNLSR-NRFVGSIPATFVSLKELREVVLSENRDLG 159

Query:   126 -VVPTFLLH-QYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKH 183
              VVP +  +   +L+ +D S  + VG+ P  +L   + L+ L L +N+ TG LR      
Sbjct:   160 GVVPHWFGNFSMNLERVDFSFCSFVGELPESLLYLKS-LKYLNLESNNMTGTLR------ 212

Query:   184 DF---LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHL 240
             DF   L  L+ +SN F GTLP    +    L +L+I+ N   G +PS +G +KEL  L+L
Sbjct:   213 DFQQPLVVLNLASNQFSGTLPCFYAS-RPSLSILNIAENSLVGGLPSCLGSLKELSHLNL 271

Query:   241 SKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ---MEFLYLENNKFSGK 297
             S N F+ + S P L     L  LDLS N F G+  S+    T+   +  L L +N FSG 
Sbjct:   272 SFNGFNYEIS-PRLMFSEKLVMLDLSHNGFSGRLPSRISETTEKLGLVLLDLSHNSFSGD 330

Query:   298 IEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLK 357
             I   +     L  L +SHN L+G IP  +GN + L+++ +S+N L G+IP+ ++    L 
Sbjct:   331 IPLRITELKSLQALRLSHNLLTGDIPARIGNLTYLQVIDLSHNALTGSIPLNIVGCFQLL 390

Query:   358 LLSVSENYLSGSMTSSFN-LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQ 416
              L +S N LSG +    + L SLK L +  N +SG IP  L     L  +D+  NNL G 
Sbjct:   391 ALMISNNNLSGEIQPELDALDSLKILDISNNHISGEIPLTLAGLKSLEIVDISSNNLSGN 450

Query:   417 IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGT 476
             + + I +   L  + L+ N+F+G++PS      +  I+ +D      S F P        
Sbjct:   451 LNEAITKWSNLKYLSLARNKFSGTLPSWLFKFDK--IQMIDYSSNRFSWFIP------DD 502

Query:   477 YYNSTL--DLEVCKRDMFTSPQ---QVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG 531
               NST   D +    + F  P    ++K+      + EL    NL  MVG+DLS N L G
Sbjct:   503 NLNSTRFKDFQTGGGEGFAEPPGKVEIKISAAVVAKDELSFSYNLLSMVGIDLSDNLLHG 562

Query:   532 NVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFL 591
              +P  +   + I  LNLS+N L G +PR    L  +++LDLS+N LSGQ+   +     L
Sbjct:   563 EIPEALFRQKNIEYLNLSYNFLEGQLPR-LEKLPRLKALDLSHNSLSGQVIGNISAPPGL 621

Query:   592 SNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGRED- 650
             +  N+S+N  SG+I +K     F   +  GN  LC  T    C+     PA     +E+ 
Sbjct:   622 TLLNLSHNCFSGIITEKEGLGKFP-GALAGNPELCVETPGSKCD-----PANIDASQEEI 675

Query:   651 -EDDFVIDMVSLYWSFGAS-YVTV---ILGLF 677
              +++ V   +S+ W F  S +++    +LG+F
Sbjct:   676 YQNELVEGPISI-WIFCLSAFISFDFGVLGIF 706

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=TAS

GO:0016020 "membrane" evidence=ISS

GO:0048507 "meristem development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=IMP;RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AtRLP1	protein binding; Receptor Like Protein 1 (AtRLP1); FUNCTIONS IN- protein binding; INVOLVED IN- signal transduction; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Leucine-rich repeat, typical subtype (InterPro-IPR003591), Leucine-rich repeat (InterPro-IPR001611), Leucine-rich repeat, N-terminal (InterPro-IPR013210); BEST Arabidopsis thaliana protein match is- AtRLP13 (Receptor Like Protein 13); protein binding (TAIR-AT1G74170.1). (1083 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT5G43730	disease resistance protein (CC-NBS-LRR class), putative; disease resistance protein (CC-NBS-LRR [...] (848 aa)							•		0.692
	ZCF37	ZCF37; ZCF37 mRNA, complete cds (211 aa)							•		0.679
	AT1G59630	F-box family protein-related; F-box family protein-related; FUNCTIONS IN- molecular_function un [...] (239 aa)							•		0.677
	AT1G58602	ATP binding / protein binding; ATP binding / protein binding; FUNCTIONS IN- protein binding, AT [...] (1138 aa)							•		0.593
	ATBZIP4	ATBZIP4 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 4); DNA binding / transcription factor; ARAB [...] (148 aa)							•		0.560
	AT1G72950	disease resistance protein (TIR-NBS class), putative; disease resistance protein (TIR-NBS class [...] (379 aa)							•		0.534
	CW9	CW9; ATP binding; Encodes CW9. (842 aa)							•		0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	700
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-72
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-64
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  251 bits (642), Expect = 9e-72
 Identities = 197/605 (32%), Positives = 292/605 (48%), Gaps = 77/605 (12%)

Query: 25  DLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTI-TSLTSLEYLDLSYNNFEGPCPLSSL 83
           ++SG  S+ +  L +++ +++S+NQLSG +   I T+ +SL YL+LS NNF G  P  S+
Sbjct: 80  NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI 139

Query: 84  ANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLS 143
            N   LE L LS  NNML  +  N + +F                        LK LDL 
Sbjct: 140 PN---LETLDLS--NNMLSGEIPNDIGSF----------------------SSLKVLDLG 172

Query: 144 LNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQD 203
            N LVG  P+  L N T LE L L +N   G +     +   L  +    NN  G +P +
Sbjct: 173 GNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231

Query: 204 MGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFL 263
           +G  L  L  LD+  N+  G IPSS+G +K L  L L +N  S     P +     L  L
Sbjct: 232 IGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLISL 289

Query: 264 DLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP 323
           DLSDN+  G+     + L  +E L+L +N F+GKI   L +  +L  L +  N  SG IP
Sbjct: 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 324 HWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNL-SSLKHL 382
             +G  +NL +L +S N L G IP  L +   L  L +  N L G +  S     SL+ +
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409

Query: 383 YVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP 442
            +Q N+ SG +P    +   +  LD+  NNL+G+I  +   +  L M+ L+ N+F G +P
Sbjct: 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469

Query: 443 SCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEF 502
             F +     +EN+DL   + S   P                                  
Sbjct: 470 DSFGSK---RLENLDLSRNQFSGAVPRKL------------------------------- 495

Query: 503 VTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFS 562
                       +L+ ++ L LS N+L+G +P E+   +K+  L+LSHN LSG IP SFS
Sbjct: 496 -----------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 563 NLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGN 622
            + ++  LDLS N+LSG+IP  L  +  L   N+S+N+L G +P  G +   + S+  GN
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604

Query: 623 LYLCG 627
           + LCG
Sbjct: 605 IDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  229 bits (586), Expect = 3e-64
 Identities = 180/572 (31%), Positives = 264/572 (46%), Gaps = 79/572 (13%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
           S +  +D+S   +SG +SS I  L  ++ ++LS N   GP P          ++   SS+
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD---------DIFTTSSS 119

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ 157
                                                  L+YL+LS NN  G  P   + 
Sbjct: 120 ---------------------------------------LRYLNLSNNNFTGSIPRGSIP 140

Query: 158 NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDIS 217
           N   LE L L+NN  +G +         L  LD   N  +G +P  +   L  L  L ++
Sbjct: 141 N---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLA 196

Query: 218 NNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSK 277
           +N   G IP  +G+MK L  ++L  NN S +     + G  SL  LDL  NN  G   S 
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSS 255

Query: 278 DLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLM 337
             NL  +++L+L  NK SG I   + +  KL  LD+S N LSG IP  +    NLEIL +
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 338 SNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDM 396
            +N   G IPV L +   L++L +  N  SG +  +    ++L  L +  N L+G IP+ 
Sbjct: 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 397 LFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENV 456
           L  S  L  L L  N+LEG+IP  +   R L  + L  N F+G +PS FT +        
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-------- 427

Query: 457 DLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRY--ELYNGS 514
                      PL +    +  N    +   K DM      +++  + +N++   L +  
Sbjct: 428 -----------PLVYFLDISNNNLQGRINSRKWDM----PSLQMLSLARNKFFGGLPDSF 472

Query: 515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSN 574
               +  LDLS N+ +G VP ++G L ++  L LS N LSG IP   S+ + + SLDLS+
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 575 NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606
           N+LSGQIPA   E+  LS  ++S N LSG IP
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 34/86 (39%), Positives = 52/86 (60%)

Query: 521 GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ 580
           GL L    L G +P++I  L+ ++ +NLS N + G+IP S  ++  +E LDLS N  +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 581 IPAQLIELNFLSNFNVSYNNLSGLIP 606
           IP  L +L  L   N++ N+LSG +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.9 bits (184), Expect = 8e-14
 Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 28/208 (13%)

Query: 21  LQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPL 80
           LQ    SG   +    L  +  LDIS+N L G ++S    + SL+ L L+ N F G  P 
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 81  SSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYL 140
           S  +   +LE L LS                         N     VP  L    +L  L
Sbjct: 471 SFGS--KRLENLDLSR------------------------NQFSGAVPRKLGSLSELMQL 504

Query: 141 DLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTL 200
            LS N L G+ P   L +  KL  L L++N  +G +    ++   L  LD S N   G +
Sbjct: 505 KLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 201 PQDMGTILKKLLVLDISNNHFEGNIPSS 228
           P+++G + + L+ ++IS+NH  G++PS+
Sbjct: 564 PKNLGNV-ESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 28/72 (38%), Positives = 45/72 (62%)

Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS 573
           S L ++  ++LS N + GN+P  +G +  +  L+LS+N  +GSIP S   L  +  L+L+
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 574 NNRLSGQIPAQL 585
            N LSG++PA L
Sbjct: 499 GNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 7e-09
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602
           I GL L +  L G IP   S L+ ++S++LS N + G IP  L  +  L   ++SYN+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 603 GLIPDK-GQYSTFDESSYRGNLYLCG 627
           G IP+  GQ ++    +  GN  L G
Sbjct: 480 GSIPESLGQLTSLRILNLNGN-SLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 6e-08
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 258 ISLWFLD---LSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDIS 314
              WF+D   L +    G   +    L  ++ + L  N   G I   L + T L  LD+S
Sbjct: 415 KGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474

Query: 315 HNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL---LNHRT 355
           +N  +G IP  +G  ++L IL ++ N L G +P  L   L HR 
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 311 LDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM 370
           L + +  L G IP+ +    +L+ + +S N + GNIP  L +  +L++L +S N  +GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 371 TSSF-NLSSLKHLYVQKNALSGPIPDML 397
             S   L+SL+ L +  N+LSG +P  L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query: 389 LSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP 442
           L G IP+ + +   L +++L GN++ G IP  +  +  L ++DLS+N FNGSIP
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 4/102 (3%)

Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRS-FSNLQMIESLDL 572
           +N + +V +DLS   ++G + S I  L  I+ +NLS+N LSG IP   F+    +  L+L
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 573 SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP-DKGQYST 613
           SNN  +G IP   I    L   ++S N LSG IP D G +S+
Sbjct: 126 SNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSS 165

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 27/87 (31%), Positives = 50/87 (57%)

Query: 287 LYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI 346
           L L+N    G I   +     L  +++S N + G+IP  +G+ ++LE+L +S N   G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 347 PVQLLNHRTLKLLSVSENYLSGSMTSS 373
           P  L    +L++L+++ N LSG + ++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 26  LSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLAN 85
           L G   N +  L HL+ +++S N + G++  ++ S+TSLE LDLSYN+F G  P  SL  
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQ 488

Query: 86  HSKLEVLLL 94
            + L +L L
Sbjct: 489 LTSLRILNL 497

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 8e-06
 Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 335 LLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPI 393
           L + N  L G IP  +   R L+ +++S N + G++  S  +++SL+ L +  N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 394 PDMLFRSSKLMTLDLRGNNLEGQIP 418
           P+ L + + L  L+L GN+L G++P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 68/264 (25%), Positives = 91/264 (34%), Gaps = 37/264 (14%)

Query: 19  TILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTI------TSLTSLEYLDLSYN 72
             L        +S  L+    LK L +S N+               T    L+ LDLS N
Sbjct: 33  NTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91

Query: 73  NF--EGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFL------PTFQLKVLELANCSL 124
               +G   L SL   S L+ L L   NN L  +    L          L+ L L    L
Sbjct: 92  ALGPDGCGVLESLLRSSSLQELKL--NNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149

Query: 125 NVVPTF-----LLHQYDLKYLDLSLNNLVGD-FPSWM--LQNNTKLEVLFLTNNSFT--G 174
                      L    DLK L+L+ N +      +    L+ N  LEVL L NN  T  G
Sbjct: 150 EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209

Query: 175 NLRLPNTKHD--FLHHLDASSNNF----IGTLPQDMGTILKKLLVLDISNNHFEGNIPSS 228
              L  T      L  L+   NN        L   + +    LL L +S N    +    
Sbjct: 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD 269

Query: 229 VGE----MKELIILHLSKNNFSED 248
           + E     + L+ L L  N F E+
Sbjct: 270 LAEVLAEKESLLELDLRGNKFGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 180 NTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILH 239
                F+  L   +    G +P D+   L+ L  +++S N   GNIP S+G +  L +L 
Sbjct: 414 TKGKWFIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 240 LSKNNFSEDFSTPFLTGCI-SLWFLDLSDNNFYGQ 273
           LS N+F+   S P   G + SL  L+L+ N+  G+
Sbjct: 473 LSYNSFNG--SIPESLGQLTSLRILNLNGNSLSGR 505

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 21 LQVLDLSGSS-----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNF 74
          L+ LDLS +          K L +LKVLD+S N L+       + L SL  LDLS NN 
Sbjct: 2  LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 8e-05
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 21  LQVLDLSGSS-----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFE 75
           LQ ++LSG+S        L  ++ L+VLD+S+N  +GS+  ++  LTSL  L+L+ N+  
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 76  GPCP 79
           G  P
Sbjct: 504 GRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 24/56 (42%), Positives = 30/56 (53%)

Query: 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRL 577
           LDLS N LT         L  ++ L+LS N L+   P +FS L  + SLDLS N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 25/60 (41%)

Query: 378 SLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRF 437
           +LK L +  N L+            L  LDL GNNL    P+    L  L  +DLS N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 375 NLSSLKHLY---VQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMD 431
           ++S L+HL    +  N++ G IP  L   + L  LDL  N+  G IP+ + QL  L +++
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 432 LSHNRFNGSIPS 443
           L+ N  +G +P+
Sbjct: 497 LNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 8/109 (7%)

Query: 142 LSLNN--LVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGT 199
           L L+N  L G  P+ + +    L+ + L+ NS  GN+         L  LD S N+F G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 200 LPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSED 248
           +P+ +G  L  L +L+++ N   G +P+++G      +LH +  NF+++
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRVPAALGGR----LLHRASFNFTDN 525

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 71/361 (19%), Positives = 118/361 (32%), Gaps = 101/361 (27%)

Query: 113 QLKVLELANCSLNV-----VPTFLLHQYDLKYLDLSLNNLVGDFPSW-----MLQNNTKL 162
            L+VL L   +L       + + L  Q  LK L LSLN               L     L
Sbjct: 24  CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL 83

Query: 163 EVLFLTNNSFTGNL--RLPN-TKHDFLHHLDASSNNFIGTLPQDM-GTILK----KLLVL 214
           + L L++N+   +    L +  +   L  L  + NN +G     +    LK     L  L
Sbjct: 84  QELDLSDNALGPDGCGVLESLLRSSSLQELKLN-NNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 215 DISNNHFEG-------NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD 267
            +  N  EG           +  ++KEL   +L+ N   +        G  +L    L  
Sbjct: 143 VLGRNRLEGASCEALAKALRANRDLKEL---NLANNGIGDA-------GIRAL-AEGLKA 191

Query: 268 NNFYGQFFSKDLNLTQMEFLYLENNKF----SGKIEEGLLNSTKLYQLDISHNFLSGHIP 323
           N               +E L L NN      +  + E L +   L  L++  N       
Sbjct: 192 N-------------CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN------- 231

Query: 324 HWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYL--SGSMTSSFNLSSLKH 381
               N ++     +++  L  NI        +L  LS+S N +   G+            
Sbjct: 232 ----NLTDAGAAALASALLSPNI--------SLLTLSLSCNDITDDGAKD---------- 269

Query: 382 LYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR-----RLGMMDLSHNR 436
                  L+  + +       L+ LDLRGN    +    + +        L  + +  + 
Sbjct: 270 -------LAEVLAEK----ESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318

Query: 437 F 437
           F
Sbjct: 319 F 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 79/265 (29%), Positives = 115/265 (43%), Gaps = 9/265 (3%)

Query: 51  SGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLP 110
           S   S  + +L  L  LDL+ N       +S L   + L  L L + NN+  +     L 
Sbjct: 82  SLDGSENLLNLLPLPSLDLNLNRLRSN--ISELLELTNLTSLDLDN-NNITDIPPLIGLL 138

Query: 111 TFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN 170
              LK L+L++  +  +P+ L +  +LK LDLS N+L  D P  +L N + L  L L+ N
Sbjct: 139 KSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLP-KLLSNLSNLNNLDLSGN 196

Query: 171 SFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVG 230
             + +L         L  LD S+N+ I  L   +   LK L  L++SNN  E ++P S+G
Sbjct: 197 KIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN-LKNLSGLELSNNKLE-DLPESIG 252

Query: 231 EMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE 290
            +  L  L LS N  S   S   LT    L     S +N         L L  +  L L 
Sbjct: 253 NLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLT 312

Query: 291 NNKFSGKIEEGLLNSTKLYQLDISH 315
                 K+   LLN+  L   + S 
Sbjct: 313 LKALELKLNSILLNNNILSNGETSS 337

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 4/156 (2%)

Query: 295 SGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHR 354
           S    E LLN   L  LD++ N L  +I   +   +NL  L + NN +    P+  L   
Sbjct: 82  SLDGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKS 140

Query: 355 TLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLE 414
            LK L +S+N +    +   NL +LK+L +  N LS  +P +L   S L  LDL GN + 
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS 199

Query: 415 GQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQ 450
             +P +I  L  L  +DLS+N     + S  +N+  
Sbjct: 200 -DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN 233

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	700
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
PLN03150	623	hypothetical protein; Provisional	99.57
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.31
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.29
PLN03150	623	hypothetical protein; Provisional	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.79
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.73
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.95
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.94
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.85
KOG4341	483	consensus F-box protein containing LRR [General fu	97.81
PRK15386	426	type III secretion protein GogB; Provisional	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.45
KOG4341	483	consensus F-box protein containing LRR [General fu	97.44
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.01
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.78
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.73
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.58
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.0
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.8
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.35
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.19
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.85
KOG4308	478	consensus LRR-containing protein [Function unknown	92.2
KOG4308	478	consensus LRR-containing protein [Function unknown	91.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.78
smart00370	26	LRR Leucine-rich repeats, outliers.	91.78
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.56
smart00370	26	LRR Leucine-rich repeats, outliers.	90.56
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.12
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.56
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.62

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.9e-66  Score=609.92  Aligned_cols=542  Identities=34%  Similarity=0.503  Sum_probs=439.2

Q ss_pred             CCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccE
Q 043317           37 LSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKV  116 (700)
Q Consensus        37 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  116 (700)
                      ..+++.|+|++|.+++.++..|..+++|++|+|++|++.+.+|...+..+++|++|++++|++.+.++.   ..+++|++
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~  144 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLET  144 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCE
Confidence            357788888888888877778888888888888888887777766666788888888888777665554   34567888


Q ss_pred             EEeeCCCC-CCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCc
Q 043317          117 LELANCSL-NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN  195 (700)
Q Consensus       117 L~L~~n~l-~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  195 (700)
                      |++++|.+ +.+|..+..+++|++|++++|.+.+.+|..+. ++++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            88888888 56777788888888888888888777777664 78888888888888887778888888888888888888


Q ss_pred             CccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccc
Q 043317          196 FIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFF  275 (700)
Q Consensus       196 l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  275 (700)
                      +.+.+|..+.. +++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..|
T Consensus       224 l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        224 LSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIP  301 (968)
T ss_pred             cCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCC
Confidence            87777777765 7788888888888887788888888888888888888877777665 457888888888888887777


Q ss_pred             cccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCC
Q 043317          276 SKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRT  355 (700)
Q Consensus       276 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  355 (700)
                      ..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++.+.+|..++.+.+
T Consensus       302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence            77778888888888888888777877888888888888888888778888888888888888888888778888888888


Q ss_pred             CCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCC
Q 043317          356 LKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH  434 (700)
Q Consensus       356 L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  434 (700)
                      |+.|++++|.+.+..+..+ .+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  461 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR  461 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence            8888888888887777766 778888888888888877888888888888888888888887777777888888888888


Q ss_pred             CccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCc
Q 043317          435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGS  514 (700)
Q Consensus       435 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  514 (700)
                      |++.+.+|..+..   ..++.+++.++.+....+..                                          ..
T Consensus       462 n~~~~~~p~~~~~---~~L~~L~ls~n~l~~~~~~~------------------------------------------~~  496 (968)
T PLN00113        462 NKFFGGLPDSFGS---KRLENLDLSRNQFSGAVPRK------------------------------------------LG  496 (968)
T ss_pred             ceeeeecCccccc---ccceEEECcCCccCCccChh------------------------------------------hh
Confidence            8887777765432   12333444444333221100                                          12


Q ss_pred             cccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 043317          515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNF  594 (700)
Q Consensus       515 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  594 (700)
                      .++.|+.|+|++|.+.+.+|..++.+++|++|+|++|.+++.+|..|+++++|+.|||++|++++.+|..+..+++|+++
T Consensus       497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCcCcccCCCCCCCCCcCCCccCCCcCCcCcC
Q 043317          595 NVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPT  629 (700)
Q Consensus       595 ~ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lcg~~  629 (700)
                      ++++|+++|.+|..+++.++...++.||+.+||.+
T Consensus       577 ~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        577 NISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             eccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.3e-61  Score=567.09  Aligned_cols=515  Identities=29%  Similarity=0.426  Sum_probs=461.0

Q ss_pred             CCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCC-CCcChhhcCCCCCCE
Q 043317           61 LTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSL-NVVPTFLLHQYDLKY  139 (700)
Q Consensus        61 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~p~~l~~~~~L~~  139 (700)
                      ..+++.|++++|.+++.++ ..+..+++|++|++++|++.+.++...+..+.+|++|++++|++ +.+|.  ..+++|++
T Consensus        68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~  144 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET  144 (968)
T ss_pred             CCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence            4589999999999998776 57999999999999999988788877777899999999999999 56775  45789999


Q ss_pred             EEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCC
Q 043317          140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNN  219 (700)
Q Consensus       140 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n  219 (700)
                      |++++|.+.+.+|..+ .++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|
T Consensus       145 L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n  222 (968)
T PLN00113        145 LDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYN  222 (968)
T ss_pred             EECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCC
Confidence            9999999998889876 49999999999999999999999999999999999999999999988876 899999999999


Q ss_pred             cCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCccccccc
Q 043317          220 HFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIE  299 (700)
Q Consensus       220 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  299 (700)
                      .+.+.+|..++++++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus       223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP  301 (968)
T ss_pred             ccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence            9999999999999999999999999998888775 679999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCC
Q 043317          300 EGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSS  378 (700)
Q Consensus       300 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~  378 (700)
                      ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..+..+ .+++
T Consensus       302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888777 7899


Q ss_pred             CcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccc
Q 043317          379 LKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL  458 (700)
Q Consensus       379 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~  458 (700)
                      |+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..++.+  +.+++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--~~L~L  459 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL--QMLSL  459 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC--cEEEC
Confidence            9999999999999999999999999999999999999999999999999999999999999888776655432  23333


Q ss_pred             cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCcccc
Q 043317          459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG  538 (700)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  538 (700)
                      .++.+....+                                           .....++|+.||+++|++++.+|..+.
T Consensus       460 ~~n~~~~~~p-------------------------------------------~~~~~~~L~~L~ls~n~l~~~~~~~~~  496 (968)
T PLN00113        460 ARNKFFGGLP-------------------------------------------DSFGSKRLENLDLSRNQFSGAVPRKLG  496 (968)
T ss_pred             cCceeeeecC-------------------------------------------cccccccceEEECcCCccCCccChhhh
Confidence            3333221111                                           001136789999999999999999999


Q ss_pred             CcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCC-CCCCCcCCC
Q 043317          539 DLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK-GQYSTFDES  617 (700)
Q Consensus       539 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~  617 (700)
                      .+++|+.|+|++|++++.+|..++++++|++|+|++|++++.+|..+..+++|+.|++++|+++|.+|.. ..+..+...
T Consensus       497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999973 334444445


Q ss_pred             ccCCCcCCc
Q 043317          618 SYRGNLYLC  626 (700)
Q Consensus       618 ~~~gn~~lc  626 (700)
                      ...+|...+
T Consensus       577 ~ls~N~l~~  585 (968)
T PLN00113        577 NISHNHLHG  585 (968)
T ss_pred             eccCCccee
Confidence            556666544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1e-43  Score=340.08  Aligned_cols=473  Identities=26%  Similarity=0.336  Sum_probs=282.8

Q ss_pred             CCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCccc
Q 043317           36 YLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLK  115 (700)
Q Consensus        36 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  115 (700)
                      .-..|+.|++++|.++. +...+.++..|.+|++++|++. ..| .+++.+.+++.++.++|... .++. .+....+|+
T Consensus        43 ~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~  117 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLV  117 (565)
T ss_pred             hhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhh
Confidence            44567777777777773 3445677777777777777776 445 34566666666666655432 2222 244445556


Q ss_pred             EEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCc
Q 043317          116 VLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN  195 (700)
Q Consensus       116 ~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  195 (700)
                      .++.+.|.+..+|..++.+..+..++..+|+++ ..|++++ .+.++..+++.+|+++...|..+. ++.|+++|.-.|.
T Consensus       118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~-~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~  194 (565)
T KOG0472|consen  118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMV-NLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL  194 (565)
T ss_pred             hhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHH-HHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh
Confidence            666666666666666666666666666666665 5555544 555555555555555433222222 4455555555444


Q ss_pred             CccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccc
Q 043317          196 FIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFF  275 (700)
Q Consensus       196 l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  275 (700)
                      +. .+|++++. +.+|..|++..|++. ..| .|.++..|+++.++.|++ +.+|....+.++++..|            
T Consensus       195 L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vL------------  257 (565)
T KOG0472|consen  195 LE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVL------------  257 (565)
T ss_pred             hh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceee------------
Confidence            43 44554444 444555555555544 333 444555555555555544 23444444444444444            


Q ss_pred             cccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccc---------
Q 043317          276 SKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI---------  346 (700)
Q Consensus       276 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------  346 (700)
                                  |+..|+++ ..|+.++-+++|++||+|+|.++ ..|..++++ .|+.|.+.+|.+...-         
T Consensus       258 ------------DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~  322 (565)
T KOG0472|consen  258 ------------DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQ  322 (565)
T ss_pred             ------------eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHH
Confidence                        44444444 33444444444555555555544 233344444 4445544444443110         


Q ss_pred             --------------------------------hhhccCCCCCCEEEccCccCcccCCCccCC---CCCcEEEccCCcCcc
Q 043317          347 --------------------------------PVQLLNHRTLKLLSVSENYLSGSMTSSFNL---SSLKHLYVQKNALSG  391 (700)
Q Consensus       347 --------------------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l---~~L~~L~l~~n~l~~  391 (700)
                                                      ........+.+.|++++-+++.++.+.|..   .-....+++.|++. 
T Consensus       323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-  401 (565)
T KOG0472|consen  323 EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-  401 (565)
T ss_pred             HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-
Confidence                                            011123345667777777777666666622   22666777777776 


Q ss_pred             CcchhhhCCCCcc-EEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCc
Q 043317          392 PIPDMLFRSSKLM-TLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLG  470 (700)
Q Consensus       392 ~~~~~~~~~~~L~-~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  470 (700)
                      .+|..+..+..+. .+.+++|.+. .+|..++.+++|..|++++|.+. .+|..++.+                      
T Consensus       402 elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l----------------------  457 (565)
T KOG0472|consen  402 ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL----------------------  457 (565)
T ss_pred             hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhh----------------------
Confidence            5666655554443 3344444444 67777777777777777777665 556555443                      


Q ss_pred             ccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCC
Q 043317          471 FCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSH  550 (700)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  550 (700)
                                                                    ..|+.||+|.|++. ..|..+..+..++.+-.++
T Consensus       458 ----------------------------------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~  490 (565)
T KOG0472|consen  458 ----------------------------------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASN  490 (565)
T ss_pred             ----------------------------------------------hhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence                                                          45888999999998 8898888888888888888


Q ss_pred             ccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCC-CCCCCCcCCCccCCC
Q 043317          551 NCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQYSTFDESSYRGN  622 (700)
Q Consensus       551 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~-~~~~~~~~~~~~~gn  622 (700)
                      |++....|+.+.+|.+|..|||.+|.+. .+|..++++++|++|++++|+|. .+|. ...-.|....+|.++
T Consensus       491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~iLmkgT~aiL~ylrd  561 (565)
T KOG0472|consen  491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQILMKGTAAILSYLRD  561 (565)
T ss_pred             ccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCHHHHhccChHHHHHHhcc
Confidence            9999888888999999999999999998 67888999999999999999998 3222 333334444445443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-39  Score=324.59  Aligned_cols=392  Identities=21%  Similarity=0.212  Sum_probs=201.4

Q ss_pred             CCEEEccCCCCCccCchHHhh--cCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEE
Q 043317          137 LKYLDLSLNNLVGDFPSWMLQ--NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVL  214 (700)
Q Consensus       137 L~~L~Ls~n~l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  214 (700)
                      -+.||.+++.+. .+......  -.+.-+.|++++|.+...-+..+.++++|+.+.+..|.++ .+|..... ..+++.|
T Consensus        54 ~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L  130 (873)
T KOG4194|consen   54 TRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKL  130 (873)
T ss_pred             ceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEE
Confidence            455677777664 22111000  1123344555555555444444444555555555555444 44433222 2334555


Q ss_pred             EccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcc
Q 043317          215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKF  294 (700)
Q Consensus       215 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  294 (700)
                      +|.+|.|+..-.+.+..++.|+.||||.|                         .++......|..-.++++|+|++|+|
T Consensus       131 ~L~~N~I~sv~se~L~~l~alrslDLSrN-------------------------~is~i~~~sfp~~~ni~~L~La~N~I  185 (873)
T KOG4194|consen  131 DLRHNLISSVTSEELSALPALRSLDLSRN-------------------------LISEIPKPSFPAKVNIKKLNLASNRI  185 (873)
T ss_pred             eeeccccccccHHHHHhHhhhhhhhhhhc-------------------------hhhcccCCCCCCCCCceEEeeccccc
Confidence            55555444444444444444555555554                         44444444444444455555555555


Q ss_pred             cccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc
Q 043317          295 SGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF  374 (700)
Q Consensus       295 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  374 (700)
                      +......|..+.+|..|.|+.|+++...+..|.+++.|+.|+|..|+|.-.--..|.++++|+.|.+..|.|.....+.|
T Consensus       186 t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F  265 (873)
T KOG4194|consen  186 TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF  265 (873)
T ss_pred             cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence            54444444444555555555555554444444445555555555555442223344455555555555555555444444


Q ss_pred             -CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhh
Q 043317          375 -NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTI  453 (700)
Q Consensus       375 -~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~  453 (700)
                       .+.++++|+|..|+++..-.+++.++++|+.|++++|.|..+-++++..+++|+.|+|++|+++..-+..|..+..+  
T Consensus       266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L--  343 (873)
T KOG4194|consen  266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL--  343 (873)
T ss_pred             eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh--
Confidence             45555555555555544444455555555555555555554444455555555555555555544333333333211  


Q ss_pred             hhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccC
Q 043317          454 ENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNV  533 (700)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  533 (700)
                      +.+.+.+|.+..+..                                          .....+++|++|||++|.+++.+
T Consensus       344 e~LnLs~Nsi~~l~e------------------------------------------~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAE------------------------------------------GAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             hhhcccccchHHHHh------------------------------------------hHHHHhhhhhhhcCcCCeEEEEE
Confidence            111122222111110                                          00122467777888888877654


Q ss_pred             C---ccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcC
Q 043317          534 P---SEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL  601 (700)
Q Consensus       534 p---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  601 (700)
                      .   ..|.++++|+.|.|.+|++..+...+|.++.+||.|||.+|.|..+-|.+|..+ .|+.|-+..-.+
T Consensus       382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            3   346677788888888888876666777888888888888888877777777777 777776655443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4e-40  Score=329.22  Aligned_cols=393  Identities=20%  Similarity=0.183  Sum_probs=337.1

Q ss_pred             cccEEEeeCCCCCCcChh-hcC-C-CCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317          113 QLKVLELANCSLNVVPTF-LLH-Q-YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL  189 (700)
Q Consensus       113 ~L~~L~L~~n~l~~~p~~-l~~-~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  189 (700)
                      .-+.||++++.+..+... +.. + ..-+.||+++|+++ .+....|.++++|+++++.+|.++ .+|.......+++.|
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L  130 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL  130 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence            467789999988554211 111 1 24567999999998 555556679999999999999987 667777777889999


Q ss_pred             eCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc
Q 043317          190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN  269 (700)
Q Consensus       190 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~  269 (700)
                      +|.+|.+. ++...-.+.++.|+.|||+.|.|+...-..|..-.++++|+|++|.|+...... |.++.+|..|.|++|+
T Consensus       131 ~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNr  208 (873)
T KOG4194|consen  131 DLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNR  208 (873)
T ss_pred             eeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc-ccccchheeeecccCc
Confidence            99999987 555444455889999999999999766667777788999999999998654444 5778999999999999


Q ss_pred             cccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhh
Q 043317          270 FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ  349 (700)
Q Consensus       270 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  349 (700)
                      ++...+..|.++++|+.|+|..|++.-.-.-.|.++++|+.|.+..|.+...-..+|..+.++++|+|+.|+++..-..+
T Consensus       209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~  288 (873)
T KOG4194|consen  209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW  288 (873)
T ss_pred             ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence            99999999999999999999999998554567899999999999999999888889999999999999999999888888


Q ss_pred             ccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCC
Q 043317          350 LLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLG  428 (700)
Q Consensus       350 ~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~  428 (700)
                      +.++.+|+.|++|+|.|..+..+.+ .+++|++|+|++|+++...++.|..+..|++|+|+.|++...-..+|..+++|+
T Consensus       289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~  368 (873)
T KOG4194|consen  289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH  368 (873)
T ss_pred             ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence            9999999999999999999988888 789999999999999988889999999999999999999977788999999999


Q ss_pred             EEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecccc
Q 043317          429 MMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRY  508 (700)
Q Consensus       429 ~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  508 (700)
                      +|||++|.++..+.+.-.-                                                             
T Consensus       369 ~LdLr~N~ls~~IEDaa~~-------------------------------------------------------------  387 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVA-------------------------------------------------------------  387 (873)
T ss_pred             hhcCcCCeEEEEEecchhh-------------------------------------------------------------
Confidence            9999999998654431100                                                             


Q ss_pred             ccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCC
Q 043317          509 ELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN  575 (700)
Q Consensus       509 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  575 (700)
                          ...+++|+.|+|.+|++..+...+|.++.+|++|||.+|.|..+.|.+|..+ .|+.|.++.-
T Consensus       388 ----f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  388 ----FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             ----hccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence                0236889999999999998888899999999999999999999999999999 8999887643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.3e-40  Score=316.04  Aligned_cols=477  Identities=25%  Similarity=0.322  Sum_probs=323.7

Q ss_pred             CCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCE
Q 043317           85 NHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEV  164 (700)
Q Consensus        85 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  164 (700)
                      .-..|+.+++++|......  +...++..|.+|++++|++..+|+.++.+..++.++.++|+++ .+|..+. .+.++..
T Consensus        43 ~qv~l~~lils~N~l~~l~--~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~-s~~~l~~  118 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLEVLR--EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIG-SLISLVK  118 (565)
T ss_pred             hhcchhhhhhccCchhhcc--HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHh-hhhhhhh
Confidence            3444555555555432221  1345555666666666666666666666666666666666666 6666654 5666666


Q ss_pred             EEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCcc
Q 043317          165 LFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNN  244 (700)
Q Consensus       165 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~  244 (700)
                      ++.++|.+. .++..++.+..++.++..+|+++ ..|++++. +.++..+++.+|+++...|. .-+++.|+.||.-.|-
T Consensus       119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~  194 (565)
T KOG0472|consen  119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNL  194 (565)
T ss_pred             hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhh
Confidence            666666665 44555666666666666666665 56666665 55667777777777643333 3337777777777666


Q ss_pred             CCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcch
Q 043317          245 FSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPH  324 (700)
Q Consensus       245 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  324 (700)
                      + +.+|... +++.+|.-|++.+|++....  .|.++..|+++++..|.+.-...+...+++++..||++.|+++ ..|+
T Consensus       195 L-~tlP~~l-g~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pd  269 (565)
T KOG0472|consen  195 L-ETLPPEL-GGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPD  269 (565)
T ss_pred             h-hcCChhh-cchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCch
Confidence            6 3455554 45677777777777765432  6667777788888888777333334447888888888888888 6788


Q ss_pred             hhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccC------CCCCcEE----EccCCc---C-c
Q 043317          325 WMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFN------LSSLKHL----YVQKNA---L-S  390 (700)
Q Consensus       325 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~------l~~L~~L----~l~~n~---l-~  390 (700)
                      .++-+.+|+.||+++|.|+ ..|..++++ .|+.|.+.+|.+..+-.+...      ++.|+.=    -++.-+   - .
T Consensus       270 e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~  347 (565)
T KOG0472|consen  270 EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA  347 (565)
T ss_pred             HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence            8888888888888888887 567778888 888888888877644332221      1111110    001000   0 0


Q ss_pred             cCcch----hhhCCCCccEEECcCCcccccCChhhhccCC---CCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCc
Q 043317          391 GPIPD----MLFRSSKLMTLDLRGNNLEGQIPDQICQLRR---LGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL  463 (700)
Q Consensus       391 ~~~~~----~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~---L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  463 (700)
                      ...|.    ......+.+.|++++-+++ .+|+.......   ...++++.|++. ++|..+..+..+. ..+.++.+.+
T Consensus       348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv-T~l~lsnn~i  424 (565)
T KOG0472|consen  348 MTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV-TDLVLSNNKI  424 (565)
T ss_pred             CCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH-HHHHhhcCcc
Confidence            01111    1223457888999999998 66766554444   788999999997 7887766654432 2233344444


Q ss_pred             cCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCC
Q 043317          464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKI  543 (700)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  543 (700)
                      .+.|.                                           ..+.++.|+.|+|++|-+. .+|.+++.+..|
T Consensus       425 sfv~~-------------------------------------------~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L  460 (565)
T KOG0472|consen  425 SFVPL-------------------------------------------ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL  460 (565)
T ss_pred             ccchH-------------------------------------------HHHhhhcceeeecccchhh-hcchhhhhhhhh
Confidence            33321                                           0133578899999999998 889999999999


Q ss_pred             cEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCCCcCCCccCCCc
Q 043317          544 RGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNL  623 (700)
Q Consensus       544 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gn~  623 (700)
                      +.||+|+|++. .+|..+..+..+|.+-.++|++....|+.+.++.+|..||+.+|.+...+|..+...++......|||
T Consensus       461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence            99999999999 79999999999999999999999888888999999999999999999888877777777776677765


Q ss_pred             C
Q 043317          624 Y  624 (700)
Q Consensus       624 ~  624 (700)
                      .
T Consensus       540 f  540 (565)
T KOG0472|consen  540 F  540 (565)
T ss_pred             c
Confidence            4

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-37  Score=327.36  Aligned_cols=472  Identities=26%  Similarity=0.292  Sum_probs=333.3

Q ss_pred             CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCC
Q 043317           30 SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFL  109 (700)
Q Consensus        30 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  109 (700)
                      +|..+..-..++.|++++|.+....-+.+.+.-+|+.||+++|++. ..| ..+..+++|+.|.++.| .+..++ .+..
T Consensus        13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n-~i~~vp-~s~~   88 (1081)
T KOG0618|consen   13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRN-YIRSVP-SSCS   88 (1081)
T ss_pred             cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhcccchh-hHhhCc-hhhh
Confidence            4444444444677777777665444445555566777777777775 455 34666777777777654 334444 2456


Q ss_pred             CCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317          110 PTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL  189 (700)
Q Consensus       110 ~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  189 (700)
                      ++.+|+++.|.+|.+..+|..+..+++|++||++.|.+. .+|..+. .++.++.+..++|......    +... ++.+
T Consensus        89 ~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~l----g~~~-ik~~  161 (1081)
T KOG0618|consen   89 NMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQRL----GQTS-IKKL  161 (1081)
T ss_pred             hhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhhh----cccc-chhh
Confidence            677888888888888888888888888888888888886 7787765 7778888888888322111    1221 7778


Q ss_pred             eCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc
Q 043317          190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN  269 (700)
Q Consensus       190 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~  269 (700)
                      ++..|.+.+.++.++.. ++.  .|+|.+|.+.   -..+..+.+|+.+....|+++...     -.-++++.|+.++|.
T Consensus       162 ~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~  230 (1081)
T KOG0618|consen  162 DLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNP  230 (1081)
T ss_pred             hhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCc
Confidence            88888877777776654 333  5888888876   224567778888888888876422     125788888888888


Q ss_pred             cccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhh
Q 043317          270 FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ  349 (700)
Q Consensus       270 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  349 (700)
                      +......  ..-.+|++++++.|++++ +|+++..+.+|+.++..+|+++ .+|..+....+|+.|.+.+|.+. .+|..
T Consensus       231 l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~  305 (1081)
T KOG0618|consen  231 LTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPF  305 (1081)
T ss_pred             ceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCc
Confidence            8733322  223578888888888884 4588888888888888888886 67777777888888888888887 56666


Q ss_pred             ccCCCCCCEEEccCccCcccCCCcc-C-CCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCC
Q 043317          350 LLNHRTLKLLSVSENYLSGSMTSSF-N-LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRL  427 (700)
Q Consensus       350 ~~~~~~L~~L~l~~n~l~~~~~~~~-~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L  427 (700)
                      ....+.|++|+|..|++...++..+ . ..+|+.++.+.|++.......=..++.|+.|.+.+|.++...-..+.+..+|
T Consensus       306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL  385 (1081)
T KOG0618|consen  306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL  385 (1081)
T ss_pred             ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence            7778888888888888887776555 2 2347777778787763221122235678888888888887776777888888


Q ss_pred             CEEecCCCccCCCCCc-hhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecc
Q 043317          428 GMMDLSHNRFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKN  506 (700)
Q Consensus       428 ~~L~Ls~N~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  506 (700)
                      ++|+|++|++. .+|. ++.+                                                           
T Consensus       386 KVLhLsyNrL~-~fpas~~~k-----------------------------------------------------------  405 (1081)
T KOG0618|consen  386 KVLHLSYNRLN-SFPASKLRK-----------------------------------------------------------  405 (1081)
T ss_pred             eeeeecccccc-cCCHHHHhc-----------------------------------------------------------
Confidence            88888888886 4443 3333                                                           


Q ss_pred             ccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCccccc
Q 043317          507 RYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLI  586 (700)
Q Consensus       507 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  586 (700)
                               +..|+.|+||+|.++ .+|..+..+..|++|...+|++. ..| .+.++++|+.+|+|.|+|+...-..-.
T Consensus       406 ---------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  406 ---------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             ---------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence                     355677888888887 67788888888888888888887 566 678888888888888888744332222


Q ss_pred             CCCCCCeEeccCCc
Q 043317          587 ELNFLSNFNVSYNN  600 (700)
Q Consensus       587 ~l~~L~~L~ls~N~  600 (700)
                      .-+.|++||+++|.
T Consensus       474 p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  474 PSPNLKYLDLSGNT  487 (1081)
T ss_pred             CCcccceeeccCCc
Confidence            23678888888886

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-36  Score=319.03  Aligned_cols=484  Identities=26%  Similarity=0.315  Sum_probs=372.7

Q ss_pred             EEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeC
Q 043317           42 VLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELAN  121 (700)
Q Consensus        42 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  121 (700)
                      .+|.|.+++. .+|..+-.-..++.|+++.|-+- ..|.....+.-+|+.||++.|. ....+. .+..+.+|+.|+++.
T Consensus         2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~-~~~fp~-~it~l~~L~~ln~s~   77 (1081)
T KOG0618|consen    2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQ-ISSFPI-QITLLSHLRQLNLSR   77 (1081)
T ss_pred             CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccc-cccCCc-hhhhHHHHhhcccch
Confidence            4678888887 56666656666999999999876 4455566677779999998654 333443 456677899999999


Q ss_pred             CCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccC
Q 043317          122 CSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLP  201 (700)
Q Consensus       122 n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  201 (700)
                      |-+..+|....++.+|+++.|.+|.+. ..|..+- .+++|+.|+++.|.+. .+|..+..+..++.+..++|..+..++
T Consensus        78 n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg  154 (1081)
T KOG0618|consen   78 NYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG  154 (1081)
T ss_pred             hhHhhCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc
Confidence            999999988889999999999999987 8888874 8899999999999886 677778888888888888883332222


Q ss_pred             hhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCC
Q 043317          202 QDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNL  281 (700)
Q Consensus       202 ~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  281 (700)
                          +  ..++.+++..|.+.+.++..+..++.  .|+|.+|.+. ..   ....+++|+.+....|++.....    .-
T Consensus       155 ----~--~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l~~----~g  218 (1081)
T KOG0618|consen  155 ----Q--TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSELEI----SG  218 (1081)
T ss_pred             ----c--ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccceEEe----cC
Confidence                2  23778888888888888887777777  7999999886 22   23568899999999988865432    34


Q ss_pred             CCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEc
Q 043317          282 TQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV  361 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  361 (700)
                      ++++.|+.++|.++...+.  ....+|+++|+++|+++ .+|+|++.+.+|+.++..+|+++ .+|..+....+|+.|.+
T Consensus       219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~  294 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA  294 (1081)
T ss_pred             cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence            7889999999998843332  23468999999999998 56699999999999999999996 78888888899999999


Q ss_pred             cCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhC-CC-CccEEECcCCcccccCChhhhccCCCCEEecCCCccCC
Q 043317          362 SENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFR-SS-KLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNG  439 (700)
Q Consensus       362 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  439 (700)
                      .+|.++.+++..-+..+|++|+|..|++. ..|+.+.. .. .|..|+.+.|++....-..=...+.|+.|.+.+|.++.
T Consensus       295 ~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd  373 (1081)
T KOG0618|consen  295 AYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD  373 (1081)
T ss_pred             hhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence            99999887776667889999999999987 45554433 33 36777788888763221122345678888888888874


Q ss_pred             CCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCcccccc
Q 043317          440 SIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYM  519 (700)
Q Consensus       440 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L  519 (700)
                      ..-..+                                                                    ..+..|
T Consensus       374 ~c~p~l--------------------------------------------------------------------~~~~hL  385 (1081)
T KOG0618|consen  374 SCFPVL--------------------------------------------------------------------VNFKHL  385 (1081)
T ss_pred             cchhhh--------------------------------------------------------------------ccccce
Confidence            332221                                                                    224788


Q ss_pred             ceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 043317          520 VGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN  599 (700)
Q Consensus       520 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  599 (700)
                      +.|+|++|++.......+.++..|++|+||+|+++ .+|+.+.++..|++|...+|++. ..| .+..+++|+.+|+|.|
T Consensus       386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN  462 (1081)
T ss_pred             eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence            99999999999666677899999999999999999 78999999999999999999999 567 8999999999999999


Q ss_pred             cCccc-CCCCCCCCCcCCCccCCCcC
Q 043317          600 NLSGL-IPDKGQYSTFDESSYRGNLY  624 (700)
Q Consensus       600 ~l~~~-~p~~~~~~~~~~~~~~gn~~  624 (700)
                      +|+-. +|......++....+.||.+
T Consensus       463 ~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  463 NLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhhhhhhhCCCcccceeeccCCcc
Confidence            99753 34332224555556677775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.98  E-value=8e-35  Score=293.21  Aligned_cols=365  Identities=27%  Similarity=0.359  Sum_probs=205.9

Q ss_pred             CCCCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCcc
Q 043317          108 FLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLH  187 (700)
Q Consensus       108 ~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  187 (700)
                      ...+++++.|.|...++..+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+.+.+..|++..             
T Consensus        28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~~R~N~LKn-------------   92 (1255)
T KOG0444|consen   28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVIVRDNNLKN-------------   92 (1255)
T ss_pred             HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHhhhcccccc-------------
Confidence            34455666666667777777777777777777777777776 444433 366666766666666542             


Q ss_pred             EEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCC
Q 043317          188 HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD  267 (700)
Q Consensus       188 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~  267 (700)
                                .-+|.+++. +..|+.|||++|++. ..|..+..-+++-.|+||+|+| +.+|...+.++..|-.||||+
T Consensus        93 ----------sGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   93 ----------SGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             ----------CCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhcccc
Confidence                      234555555 555666666666665 4555555555666666666666 345555555555555666666


Q ss_pred             cccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCC-CCcchhhcCCCCCcEEEcccCcCcccc
Q 043317          268 NNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLS-GHIPHWMGNFSNLEILLMSNNCLEGNI  346 (700)
Q Consensus       268 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~  346 (700)
                      |++. ..|+.+..+..|++|+|++|.+.-.--..+..+++|++|.+++.+-+ ..+|..+..+.+|..+|++.|.+. .+
T Consensus       160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence            6553 23344455556666666666554322223334556666666665332 345666666777777777777766 66


Q ss_pred             hhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccc-ccCChhhhccC
Q 043317          347 PVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLE-GQIPDQICQLR  425 (700)
Q Consensus       347 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~-~~~~~~~~~l~  425 (700)
                      |+.+..+++|+.|+||+|+|+......-...+|++|+++.|+++ .+|+++..+++|+.|.+.+|+++ .-+|..++.+.
T Consensus       238 Pecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             hHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence            66666666666666666666543322223344445555555544 34444444444444444444433 11333444444


Q ss_pred             CCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeec
Q 043317          426 RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTK  505 (700)
Q Consensus       426 ~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  505 (700)
                      .|+.+                                                                           
T Consensus       317 ~Levf---------------------------------------------------------------------------  321 (1255)
T KOG0444|consen  317 QLEVF---------------------------------------------------------------------------  321 (1255)
T ss_pred             hhHHH---------------------------------------------------------------------------
Confidence            44444                                                                           


Q ss_pred             cccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccc
Q 043317          506 NRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQL  585 (700)
Q Consensus       506 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  585 (700)
                                       ..++|.+. .+|+.++.+..|+.|.|++|++. ..|+.+.-++.|+.||+..|.-....|.-=
T Consensus       322 -----------------~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~  382 (1255)
T KOG0444|consen  322 -----------------HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPN  382 (1255)
T ss_pred             -----------------Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcc
Confidence                             44444444 56666666667777777777766 567777777777777777776553444322


Q ss_pred             cCCCCCCeEecc
Q 043317          586 IELNFLSNFNVS  597 (700)
Q Consensus       586 ~~l~~L~~L~ls  597 (700)
                      ..-+.|+.-++.
T Consensus       383 da~~~lefYNID  394 (1255)
T KOG0444|consen  383 DARKKLEFYNID  394 (1255)
T ss_pred             hhhhcceeeecc
Confidence            222344444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.9e-34  Score=290.58  Aligned_cols=365  Identities=24%  Similarity=0.289  Sum_probs=212.4

Q ss_pred             cCCCCCCEEECCCCcCC-cccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCc
Q 043317           35 KYLSHLKVLDISHNQLS-GSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQ  113 (700)
Q Consensus        35 ~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  113 (700)
                      +-++-.+-.|+|+|.++ +..|.....++.++.|.|...++. .+| ..++.+.+|++|.+++|+.+....  .+..++.
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~~vhG--ELs~Lp~   79 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLISVHG--ELSDLPR   79 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhHhhhh--hhccchh
Confidence            34566677777788777 347777777778888877777776 566 467777777777777776544322  3566777


Q ss_pred             ccEEEeeCCCC--CCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeC
Q 043317          114 LKVLELANCSL--NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDA  191 (700)
Q Consensus       114 L~~L~L~~n~l--~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  191 (700)
                      |+.+++..|++  ..+|..++++..|+.||||+|++. ++|..+ ..-+++-.|+|++|+|..+....+.++..|-.|||
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence            88888888877  567888888888888888888887 777765 35566666777766665333333344444555555


Q ss_pred             CCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCC-CCchHHHhcCCcCcEEEcCCccc
Q 043317          192 SSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSE-DFSTPFLTGCISLWFLDLSDNNF  270 (700)
Q Consensus       192 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l  270 (700)
                      ++|++. .+|+.+.. +..|++|+|++|.+....-..+..+++|+.|.+++.+-+- .+|..+ ..+.+|..+|+|.|++
T Consensus       158 S~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS~N~L  234 (1255)
T KOG0444|consen  158 SNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLSENNL  234 (1255)
T ss_pred             ccchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhccccccCC
Confidence            555554 45555544 5566666666665543333333445555556665544322 233322 3455555555555555


Q ss_pred             ccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcc-cchhh
Q 043317          271 YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG-NIPVQ  349 (700)
Q Consensus       271 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~  349 (700)
                      . ..|+.+.++++|+.|+|++|+++ ...-......+|++|++|.|+++ .+|.+++.++.|+.|.+.+|+++- -+|..
T Consensus       235 p-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG  311 (1255)
T KOG0444|consen  235 P-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG  311 (1255)
T ss_pred             C-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence            3 33444555555555555555555 22223333445555555555555 455555555555555555555431 24555


Q ss_pred             ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCc
Q 043317          350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNN  412 (700)
Q Consensus       350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~  412 (700)
                      ++.+..|+.+..++|++.-.+.+...|..|+.|.|+.|++. .+|+++.-++.|..||+..|.
T Consensus       312 IGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  312 IGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             hhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            55555555555555555444443335555555555555554 455555555555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=1.5e-27  Score=229.12  Aligned_cols=293  Identities=20%  Similarity=0.171  Sum_probs=167.6

Q ss_pred             EEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCC-C
Q 043317          116 VLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASS-N  194 (700)
Q Consensus       116 ~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~-n  194 (700)
                      .++.++-.++++|..+-  +.-+.++|..|+|+ .+|...|+.+++|+.|+|++|+|+.+-|.+|..+..+..|-+.+ |
T Consensus        50 ~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             eEEccCCCcccCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            45556666677776553  25677888888887 88888888888888888888888888888888888777766655 6


Q ss_pred             cCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc--
Q 043317          195 NFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG--  272 (700)
Q Consensus       195 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--  272 (700)
                      +|+ .+|+..|..+..++.|.+.-|++.....+.|..++++..|.+..|.+.. ++...+..+..++.+.+..|.+..  
T Consensus       127 kI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  127 KIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             chh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh-hccccccchhccchHhhhcCcccccc
Confidence            665 7888888878888888888888887777788888888888888887743 444344567777777777776321  


Q ss_pred             ----------ccccccCCCCCCcEEEcccCcccccccccccCC-CCCcEEEcccCcCCCCcc-hhhcCCCCCcEEEcccC
Q 043317          273 ----------QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGHIP-HWMGNFSNLEILLMSNN  340 (700)
Q Consensus       273 ----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n  340 (700)
                                ..+..+++........+.+.++..+.+..|... .++..--.+.+...+..| .+|..+++|++|++++|
T Consensus       205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN  284 (498)
T ss_pred             ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence                      112222222223333333333332222222111 111110111111111222 23444445555555555


Q ss_pred             cCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcc
Q 043317          341 CLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNL  413 (700)
Q Consensus       341 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l  413 (700)
                      +++++-+.+|.+...++.|.|..|++..+....| ++..|++|+|++|+|+...|.+|..+..|.+|++-.|.+
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            5544444444444444444444444444444444 444444444444444444444444444444444444443

>PLN03210 Resistant to P

Probab=99.91  E-value=9e-23  Score=241.63  Aligned_cols=308  Identities=21%  Similarity=0.217  Sum_probs=212.1

Q ss_pred             cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCC
Q 043317          113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS  192 (700)
Q Consensus       113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  192 (700)
                      +|+.|++.++.++.+|..+ ...+|+.|++++|.+. .++..+ ..+++|+.|+++++.....+| .+..+++|+.|+++
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~  665 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS  665 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence            5677777776666666655 3466777777777665 555544 366677777776655434444 35566677777777


Q ss_pred             CCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc
Q 043317          193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG  272 (700)
Q Consensus       193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  272 (700)
                      +|.....+|..+.. +++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|.    ...+|++|++++|.+..
T Consensus       666 ~c~~L~~lp~si~~-L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~  739 (1153)
T PLN03210        666 DCSSLVELPSSIQY-LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE  739 (1153)
T ss_pred             CCCCccccchhhhc-cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc
Confidence            76655566666654 6677777777765444555544 567777777777655444442    14567777777777643


Q ss_pred             ccccccCCCCCCcEEEcccCccc-------ccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCccc
Q 043317          273 QFFSKDLNLTQMEFLYLENNKFS-------GKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGN  345 (700)
Q Consensus       273 ~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  345 (700)
                       +|..+ .+++|++|.+.++...       ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.
T Consensus       740 -lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~  817 (1153)
T PLN03210        740 -FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET  817 (1153)
T ss_pred             -ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence             23322 4566777776654321       11122233457899999999987778899999999999999998865557


Q ss_pred             chhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccC
Q 043317          346 IPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR  425 (700)
Q Consensus       346 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~  425 (700)
                      +|... .+++|+.|++++|......+..  .++|+.|++++|.++ .+|.++..+++|+.|++++|+--..+|..+..++
T Consensus       818 LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~  893 (1153)
T PLN03210        818 LPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK  893 (1153)
T ss_pred             eCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence            77665 7889999999998665544443  468999999999997 6888999999999999998554336777888999


Q ss_pred             CCCEEecCCCc
Q 043317          426 RLGMMDLSHNR  436 (700)
Q Consensus       426 ~L~~L~Ls~N~  436 (700)
                      +|+.+++++|.
T Consensus       894 ~L~~L~l~~C~  904 (1153)
T PLN03210        894 HLETVDFSDCG  904 (1153)
T ss_pred             CCCeeecCCCc
Confidence            99999999985

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=7.8e-26  Score=217.47  Aligned_cols=429  Identities=21%  Similarity=0.191  Sum_probs=273.8

Q ss_pred             EEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccC
Q 043317          139 YLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISN  218 (700)
Q Consensus       139 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~  218 (700)
                      ..+-++-.++ ++|..+.   ..-.+++|..|+|+...+.+|+.+++|+.|||++|+|+ .|.++.|..++++.+|-+.+
T Consensus        50 ~VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   50 IVDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             eEEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence            4555666666 7887442   46788889999998888888888888888888888877 56666666677777666655


Q ss_pred             -CcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccc-
Q 043317          219 -NHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSG-  296 (700)
Q Consensus       219 -n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-  296 (700)
                       |+|+......|+++..++.|.+.-|++.-. ....+..++++..|.+.+|.+.......+..+..++.+.+..|.+.. 
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Ci-r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCI-RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcch-hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence             888876677888888888888888888654 44445668888888888888877666677888888888888777321 


Q ss_pred             -----------cccccccCCCCCcEEEcccCcCCCCcchhhcCC-CCCcEEEcccCcCcccch-hhccCCCCCCEEEccC
Q 043317          297 -----------KIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNF-SNLEILLMSNNCLEGNIP-VQLLNHRTLKLLSVSE  363 (700)
Q Consensus       297 -----------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~  363 (700)
                                 ..|..++......-..+.+.++..+.+..|... ..+..=..+.+...++.| ..|..+++|+.|++++
T Consensus       204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn  283 (498)
T KOG4237|consen  204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN  283 (498)
T ss_pred             cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence                       122233333333344444555544444444322 122111223333333433 4589999999999999


Q ss_pred             ccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCC
Q 043317          364 NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP  442 (700)
Q Consensus       364 n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  442 (700)
                      |+++++.+.+| +...+++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|++...--
T Consensus       284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~  363 (498)
T KOG4237|consen  284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR  363 (498)
T ss_pred             CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence            99999999999 89999999999999987777889999999999999999999999999999999999999998864322


Q ss_pred             c-hhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCC--CcccceEEEeeccccccccCcccccc
Q 043317          443 S-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFT--SPQQVKVEFVTKNRYELYNGSNLNYM  519 (700)
Q Consensus       443 ~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~l~~L  519 (700)
                      - +++.  ++.-.  ...+++-...|     .    +...+++.......|.  ++.....  ..    ...-...++-+
T Consensus       364 l~wl~~--Wlr~~--~~~~~~~Cq~p-----~----~~~~~~~~dv~~~~~~c~~~ee~~~--~~----s~~cP~~c~c~  424 (498)
T KOG4237|consen  364 LAWLGE--WLRKK--SVVGNPRCQSP-----G----FVRQIPISDVAFGDFRCGGPEELGC--LT----SSPCPPPCTCL  424 (498)
T ss_pred             hHHHHH--HHhhC--CCCCCCCCCCC-----c----hhccccchhccccccccCCccccCC--CC----CCCCCCCcchh
Confidence            1 1211  11111  11111111111     0    0000111110000000  0000000  00    00000111222


Q ss_pred             ce-EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccC
Q 043317          520 VG-LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY  598 (700)
Q Consensus       520 ~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  598 (700)
                      .+ ...|+..+. .+|..+.  ....+|++.+|.++ .+|+.  .+.+| .+|+|+|+++..--..|.++++|.+|-+||
T Consensus       425 ~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy  497 (498)
T KOG4237|consen  425 DTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY  497 (498)
T ss_pred             hhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence            22 233444444 4444333  24567788888887 56665  56677 888888888866667788888888888887


Q ss_pred             C
Q 043317          599 N  599 (700)
Q Consensus       599 N  599 (700)
                      |
T Consensus       498 n  498 (498)
T KOG4237|consen  498 N  498 (498)
T ss_pred             C
Confidence            6

>PLN03210 Resistant to P

Probab=99.91  E-value=7.9e-23  Score=242.11  Aligned_cols=340  Identities=19%  Similarity=0.202  Sum_probs=209.7

Q ss_pred             CchHHhhcCCCCCEEEccCCcC------cccCCCCCCCC-CCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCc
Q 043317          151 FPSWMLQNNTKLEVLFLTNNSF------TGNLRLPNTKH-DFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG  223 (700)
Q Consensus       151 ~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~  223 (700)
                      +....|.++.+|+.|.+..+..      ...+|..+..+ ..|+.|.+.++.+. .+|..+.  +.+|++|++.+|++. 
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-
Confidence            3444556777777777755432      22334444443 34777777776654 5666552  467777777777766 


Q ss_pred             cCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCccccccccccc
Q 043317          224 NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLL  303 (700)
Q Consensus       224 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  303 (700)
                      .++..+..+++|+.|+++++.....+|.  +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ 
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence            4555666777777777776654444553  3456777777777776656666667777777777777765444555544 


Q ss_pred             CCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCccc-------CCCcc-C
Q 043317          304 NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGS-------MTSSF-N  375 (700)
Q Consensus       304 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-------~~~~~-~  375 (700)
                      ++++|+.|++++|.....+|..   ..+|++|++++|.+. .+|..+ .+++|+.|.+.++.....       .+... .
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~  776 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML  776 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence            5677777777777544444432   346777777777765 455443 456666666665432111       11111 2


Q ss_pred             CCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhh
Q 043317          376 LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIEN  455 (700)
Q Consensus       376 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~  455 (700)
                      +++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.            
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~------------  843 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD------------  843 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc------------
Confidence            4567777777776666667777777777777777665433555544 566777777776643322221            


Q ss_pred             ccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCc
Q 043317          456 VDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPS  535 (700)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  535 (700)
                                                                                 ...+++.|+|++|.++ .+|.
T Consensus       844 -----------------------------------------------------------~~~nL~~L~Ls~n~i~-~iP~  863 (1153)
T PLN03210        844 -----------------------------------------------------------ISTNISDLNLSRTGIE-EVPW  863 (1153)
T ss_pred             -----------------------------------------------------------cccccCEeECCCCCCc-cChH
Confidence                                                                       1145667778887777 5677


Q ss_pred             cccCcCCCcEEeCCC-ccCccccCcccccccCCCEEeCCCCc
Q 043317          536 EIGDLQKIRGLNLSH-NCLSGSIPRSFSNLQMIESLDLSNNR  576 (700)
Q Consensus       536 ~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~  576 (700)
                      .+..+++|+.|++++ |+++ .+|..+..+++|+.+++++|.
T Consensus       864 si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        864 WIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             HHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            777778888888877 4444 566667777778888877774

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=7.9e-22  Score=216.34  Aligned_cols=80  Identities=29%  Similarity=0.334  Sum_probs=43.4

Q ss_pred             cceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccC
Q 043317          519 MVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY  598 (700)
Q Consensus       519 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  598 (700)
                      |+.|++++|.+++ +|..   .++|+.|++++|++++ +|..+   .+|+.|++++|+++ .+|..+..++.|+.|++++
T Consensus       384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~  454 (788)
T PRK15387        384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG  454 (788)
T ss_pred             cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence            4455566666552 3332   1345566666666653 44322   34555666666665 4555566666666666666


Q ss_pred             CcCcccCCC
Q 043317          599 NNLSGLIPD  607 (700)
Q Consensus       599 N~l~~~~p~  607 (700)
                      |+|+|.+|.
T Consensus       455 N~Ls~~~~~  463 (788)
T PRK15387        455 NPLSERTLQ  463 (788)
T ss_pred             CCCCchHHH
Confidence            666655443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2.9e-21  Score=211.90  Aligned_cols=264  Identities=25%  Similarity=0.279  Sum_probs=137.0

Q ss_pred             cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCC
Q 043317          113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS  192 (700)
Q Consensus       113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  192 (700)
                      .-..|+++++.++.+|..+.  .+|+.|++++|+++ .+|.    .+++|++|++++|+++.. |.   ..++|+.|+++
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeecc
Confidence            45667777777777777664  36777777777776 5664    346677777777776632 32   13456666666


Q ss_pred             CCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc
Q 043317          193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG  272 (700)
Q Consensus       193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  272 (700)
                      +|.+. .+|..    ..+|+.|++++|+++. +|.   ..++|+.|++++|++++ +|. .   ..+|+.|++++|.+++
T Consensus       271 ~N~L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~-l---p~~L~~L~Ls~N~L~~  336 (788)
T PRK15387        271 SNPLT-HLPAL----PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA-L---PSELCKLWAYNNQLTS  336 (788)
T ss_pred             CCchh-hhhhc----hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCC-C---cccccccccccCcccc
Confidence            66655 34431    2356666666666652 333   13456666666666654 222 1   2345555555555543


Q ss_pred             ccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccC
Q 043317          273 QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN  352 (700)
Q Consensus       273 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  352 (700)
                      . |..   ..+|+.|++++|++++                         +|..   .++|+.|++++|.+++ +|..   
T Consensus       337 L-P~l---p~~Lq~LdLS~N~Ls~-------------------------LP~l---p~~L~~L~Ls~N~L~~-LP~l---  380 (788)
T PRK15387        337 L-PTL---PSGLQELSVSDNQLAS-------------------------LPTL---PSELYKLWAYNNRLTS-LPAL---  380 (788)
T ss_pred             c-ccc---ccccceEecCCCccCC-------------------------CCCC---Ccccceehhhcccccc-Cccc---
Confidence            2 110   1234445555554442                         2221   1234444444444442 3321   


Q ss_pred             CCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEec
Q 043317          353 HRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDL  432 (700)
Q Consensus       353 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L  432 (700)
                      ..+|+.|++++|.+++.+..   .++|+.|++++|++++ +|..   ..+|+.|++++|+++ .+|..++.+++|+.|++
T Consensus       381 ~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        381 PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            12445555555555433221   2345555555555552 3432   124555556666555 45555555556666666


Q ss_pred             CCCccCCCCCchh
Q 043317          433 SHNRFNGSIPSCF  445 (700)
Q Consensus       433 s~N~l~~~~p~~~  445 (700)
                      ++|++++..|..+
T Consensus       453 s~N~Ls~~~~~~L  465 (788)
T PRK15387        453 EGNPLSERTLQAL  465 (788)
T ss_pred             CCCCCCchHHHHH
Confidence            6666555544444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.5e-19  Score=199.92  Aligned_cols=34  Identities=18%  Similarity=0.397  Sum_probs=13.9

Q ss_pred             CCcEEEccCCcCCccCCccccCCCCCcEEEccCccCC
Q 043317          210 KLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFS  246 (700)
Q Consensus       210 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~  246 (700)
                      .++.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt  233 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT  233 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc
Confidence            3444444444444 2232221  24444444444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=1.8e-19  Score=199.40  Aligned_cols=246  Identities=21%  Similarity=0.292  Sum_probs=162.5

Q ss_pred             cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCC
Q 043317          113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS  192 (700)
Q Consensus       113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  192 (700)
                      +...|++++++++.+|..+.  ++|+.|++++|+++ .+|..++   ++|+.|++++|++++ +|..+  ...|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence            56789999988888887664  47899999999988 7887654   578899999888873 44433  2468888888


Q ss_pred             CCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc
Q 043317          193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG  272 (700)
Q Consensus       193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  272 (700)
                      +|.+. .+|..+.   .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+   .++|+.|++++|.+..
T Consensus       250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l---p~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        250 INRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHL---PSGITHLNVQSNSLTA  318 (754)
T ss_pred             CCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccc---hhhHHHHHhcCCcccc
Confidence            88877 6777654   47888888888887 4565543  478888888888864 44332   2467777777777764


Q ss_pred             ccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccC
Q 043317          273 QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN  352 (700)
Q Consensus       273 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  352 (700)
                      . |..+  .++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+. 
T Consensus       319 L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~-  387 (754)
T PRK15370        319 L-PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP-  387 (754)
T ss_pred             C-Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH-
Confidence            3 2222  2567777777777764 444432  56777777777766 3454442  46777777777766 3444332 


Q ss_pred             CCCCCEEEccCccCcccCCCcc----CCCCCcEEEccCCcCc
Q 043317          353 HRTLKLLSVSENYLSGSMTSSF----NLSSLKHLYVQKNALS  390 (700)
Q Consensus       353 ~~~L~~L~l~~n~l~~~~~~~~----~l~~L~~L~l~~n~l~  390 (700)
                       ..|+.|++++|+++..+....    .++.+..+++.+|.++
T Consensus       388 -~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 -AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             246666666666664432211    2355666666666664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=2.9e-20  Score=191.92  Aligned_cols=279  Identities=22%  Similarity=0.270  Sum_probs=146.8

Q ss_pred             EEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccc----cccccCCCCCCcEEEcccCcccc------cccccccCCC
Q 043317          237 ILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQ----FFSKDLNLTQMEFLYLENNKFSG------KIEEGLLNST  306 (700)
Q Consensus       237 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~~~  306 (700)
                      .|+|..+.+++.....++..+..|+.++++++.++..    ++..+...++++.++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4677777777544445555666777777777776432    22333445556666666655541      1122334444


Q ss_pred             CCcEEEcccCcCCCCcchhhcCCCC---CcEEEcccCcCcc----cchhhccCCCCCCEEEccCccCcccCCCccCCCCC
Q 043317          307 KLYQLDISHNFLSGHIPHWMGNFSN---LEILLMSNNCLEG----NIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSL  379 (700)
Q Consensus       307 ~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L  379 (700)
                      +|+.|++++|.+.+..+..+..+..   |++|++++|++.+    .+...+..+                      .++|
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~----------------------~~~L  139 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL----------------------PPAL  139 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC----------------------CCCc
Confidence            5555555555544333333333332   4444444444431    111112222                      1556


Q ss_pred             cEEEccCCcCccC----cchhhhCCCCccEEECcCCccccc----CChhhhccCCCCEEecCCCccCCCCCchhhhhhhh
Q 043317          380 KHLYVQKNALSGP----IPDMLFRSSKLMTLDLRGNNLEGQ----IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQW  451 (700)
Q Consensus       380 ~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l  451 (700)
                      ++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+.+.....+....  
T Consensus       140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~--  217 (319)
T cd00116         140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL--  217 (319)
T ss_pred             eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh--
Confidence            6666666665522    233444556666666666666532    222334445677777777666532221111100  


Q ss_pred             hhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcc
Q 043317          452 TIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG  531 (700)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  531 (700)
                                                                                    ..++.|+.|++++|.+++
T Consensus       218 --------------------------------------------------------------~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         218 --------------------------------------------------------------ASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             --------------------------------------------------------------cccCCCCEEecCCCcCch
Confidence                                                                          113566667777776664


Q ss_pred             cCCcccc-----CcCCCcEEeCCCccCc----cccCcccccccCCCEEeCCCCcCccc----CcccccCC-CCCCeEecc
Q 043317          532 NVPSEIG-----DLQKIRGLNLSHNCLS----GSIPRSFSNLQMIESLDLSNNRLSGQ----IPAQLIEL-NFLSNFNVS  597 (700)
Q Consensus       532 ~~p~~~~-----~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls  597 (700)
                      .....+.     ..+.|++|++++|.++    ..+...+..+++|+.+|+++|.++..    ....+... +.|+++++.
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            2222221     1357777777777775    22344556667778888888887744    44444444 567777777


Q ss_pred             CCcC
Q 043317          598 YNNL  601 (700)
Q Consensus       598 ~N~l  601 (700)
                      +|++
T Consensus       316 ~~~~  319 (319)
T cd00116         316 DDSF  319 (319)
T ss_pred             CCCC
Confidence            7764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.77  E-value=2e-19  Score=185.58  Aligned_cols=207  Identities=22%  Similarity=0.257  Sum_probs=133.8

Q ss_pred             EEEccCCcCC-ccCCccccCCCCCcEEEccCccCCCCCchH---HHhcCCcCcEEEcCCccccc------ccccccCCCC
Q 043317          213 VLDISNNHFE-GNIPSSVGEMKELIILHLSKNNFSEDFSTP---FLTGCISLWFLDLSDNNFYG------QFFSKDLNLT  282 (700)
Q Consensus       213 ~L~L~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~L~~n~l~~------~~~~~~~~l~  282 (700)
                      .|+|..+.++ ......+..+..|+.++++++.+++.....   .....+++++++++++.+.+      ..+..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4677777776 344556677888999999999986532222   23456779999999998862      2334566788


Q ss_pred             CCcEEEcccCcccccccccccCCCC---CcEEEcccCcCCC----CcchhhcCC-CCCcEEEcccCcCccc----chhhc
Q 043317          283 QMEFLYLENNKFSGKIEEGLLNSTK---LYQLDISHNFLSG----HIPHWMGNF-SNLEILLMSNNCLEGN----IPVQL  350 (700)
Q Consensus       283 ~L~~L~L~~n~l~~~~~~~~~~~~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~  350 (700)
                      +|+.|++++|.+.+..+..+..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            9999999999998666666655555   9999999999874    233455666 8999999999999843    23344


Q ss_pred             cCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccccc----CChhhhccCC
Q 043317          351 LNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQ----IPDQICQLRR  426 (700)
Q Consensus       351 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~----~~~~~~~l~~  426 (700)
                      ..+.+|++|++++|.+++....                   .++..+..+++|++|++++|.+++.    ++..+..+++
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~-------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~  222 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIR-------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS  222 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHH-------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence            4555666666666655531110                   1122233334555555555554422    1223445556


Q ss_pred             CCEEecCCCccC
Q 043317          427 LGMMDLSHNRFN  438 (700)
Q Consensus       427 L~~L~Ls~N~l~  438 (700)
                      |++|++++|+++
T Consensus       223 L~~L~ls~n~l~  234 (319)
T cd00116         223 LEVLNLGDNNLT  234 (319)
T ss_pred             CCEEecCCCcCc
Confidence            666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=3.9e-19  Score=151.89  Aligned_cols=185  Identities=26%  Similarity=0.419  Sum_probs=147.8

Q ss_pred             ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCE
Q 043317          350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM  429 (700)
Q Consensus       350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  429 (700)
                      +..+..++.|.+++|+++..+|....+.+|+.|++.+|++. .+|..+..+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            34556677788888888877777777888888888888887 68888888999999999999888 78899999999999


Q ss_pred             EecCCCccCC-CCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecccc
Q 043317          430 MDLSHNRFNG-SIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRY  508 (700)
Q Consensus       430 L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  508 (700)
                      ||+++|++.. ..|..|..+                                                            
T Consensus       107 ldltynnl~e~~lpgnff~m------------------------------------------------------------  126 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYM------------------------------------------------------------  126 (264)
T ss_pred             hhccccccccccCCcchhHH------------------------------------------------------------
Confidence            9999988864 345555443                                                            


Q ss_pred             ccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCC
Q 043317          509 ELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIEL  588 (700)
Q Consensus       509 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  588 (700)
                              +.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.+++|+.|.+.+|+++ .+|..++.+
T Consensus       127 --------~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  127 --------TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             --------HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence                    44556888999988 78888999999999999999988 78999999999999999999998 566666665


Q ss_pred             CC---CCeEeccCCcCcccCCC
Q 043317          589 NF---LSNFNVSYNNLSGLIPD  607 (700)
Q Consensus       589 ~~---L~~L~ls~N~l~~~~p~  607 (700)
                      .-   =+.+.+.+|++...|.+
T Consensus       196 ~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  196 DLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             hhhhhHHHHhhhhCCCCChHHH
Confidence            43   24566677887655543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.1e-18  Score=149.22  Aligned_cols=169  Identities=26%  Similarity=0.470  Sum_probs=150.9

Q ss_pred             CCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhh
Q 043317          370 MTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNML  449 (700)
Q Consensus       370 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  449 (700)
                      .+..|.+...+.|.+++|+++ .+|..+..+.+|+.|++++|+++ ..|.+++.+++|+.|+++-|++. ..|..|+++ 
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~-  101 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF-  101 (264)
T ss_pred             cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC-
Confidence            345567888999999999998 67778899999999999999999 78999999999999999999987 777777664 


Q ss_pred             hhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcC
Q 043317          450 QWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNEL  529 (700)
Q Consensus       450 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  529 (700)
                                                                                         +.|+.|||++|++
T Consensus       102 -------------------------------------------------------------------p~levldltynnl  114 (264)
T KOG0617|consen  102 -------------------------------------------------------------------PALEVLDLTYNNL  114 (264)
T ss_pred             -------------------------------------------------------------------chhhhhhcccccc
Confidence                                                                               5677799999999


Q ss_pred             cc-cCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCC
Q 043317          530 TG-NVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK  608 (700)
Q Consensus       530 ~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  608 (700)
                      .. ..|+.|..++.|+.|+|+.|.+. .+|..++++++||.|.+..|.+. ..|..++.+++|+.|.+.+|+++-.+|..
T Consensus       115 ~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  115 NENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             ccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence            74 67999999999999999999998 88889999999999999999998 78999999999999999999999888875


Q ss_pred             CCC
Q 043317          609 GQY  611 (700)
Q Consensus       609 ~~~  611 (700)
                      +++
T Consensus       193 ~~l  195 (264)
T KOG0617|consen  193 ANL  195 (264)
T ss_pred             hhh
Confidence            544

>PLN03150 hypothetical protein; Provisional

Probab=99.57  E-value=4.5e-15  Score=164.26  Aligned_cols=118  Identities=34%  Similarity=0.588  Sum_probs=105.5

Q ss_pred             ccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEecc
Q 043317          518 YMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS  597 (700)
Q Consensus       518 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  597 (700)
                      .++.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCC--CCCCCcCCCccCCCcCCcCcCCCCCCC
Q 043317          598 YNNLSGLIPDK--GQYSTFDESSYRGNLYLCGPTINKSCN  635 (700)
Q Consensus       598 ~N~l~~~~p~~--~~~~~~~~~~~~gn~~lcg~~~~~~c~  635 (700)
                      +|+++|.+|..  ..+.......+.+|+.+||.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999973  222233445788999999987656674

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.31  E-value=6.9e-14  Score=141.88  Aligned_cols=195  Identities=27%  Similarity=0.456  Sum_probs=154.0

Q ss_pred             CCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEc
Q 043317          305 STKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYV  384 (700)
Q Consensus       305 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l  384 (700)
                      +..-...|++.|++. .+|..++.+..|+.+.+..|.+. .+|..++++..|++++++.|+++..+...+.++ |+.|.+
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence            344556788888887 67777777778888888888887 678888888888888888888887777766544 888889


Q ss_pred             cCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCcc
Q 043317          385 QKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS  464 (700)
Q Consensus       385 ~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  464 (700)
                      ++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..+                
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L----------------  211 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL----------------  211 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC----------------
Confidence            999987 67888888889999999999988 67888899999999999999886 555554432                


Q ss_pred             CCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCc
Q 043317          465 IFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR  544 (700)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  544 (700)
                                                                           .|..||+|+|+++ .+|-.|..|+.|+
T Consensus       212 -----------------------------------------------------pLi~lDfScNkis-~iPv~fr~m~~Lq  237 (722)
T KOG0532|consen  212 -----------------------------------------------------PLIRLDFSCNKIS-YLPVDFRKMRHLQ  237 (722)
T ss_pred             -----------------------------------------------------ceeeeecccCcee-ecchhhhhhhhhe
Confidence                                                                 3567999999998 8888999999999


Q ss_pred             EEeCCCccCccccCccc---ccccCCCEEeCCCCc
Q 043317          545 GLNLSHNCLSGSIPRSF---SNLQMIESLDLSNNR  576 (700)
Q Consensus       545 ~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~  576 (700)
                      +|-|.+|.++ ..|..+   +...-.++|+..-++
T Consensus       238 ~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  238 VLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            9999999998 566544   334445777777774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.29  E-value=7.1e-12  Score=133.10  Aligned_cols=198  Identities=32%  Similarity=0.425  Sum_probs=105.7

Q ss_pred             EEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCC-CCcEEEccCCcCccCcchhhhCCCCccEEECcCCc
Q 043317          334 ILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLS-SLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNN  412 (700)
Q Consensus       334 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~  412 (700)
                      .++++.|.+.. ....+.....++.|++.+|.++.+.+...... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            34555554431 12223333455555555555555544443342 5666666666665 344455566666666666666


Q ss_pred             ccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCC
Q 043317          413 LEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMF  492 (700)
Q Consensus       413 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (700)
                      +. .+|......+.|+.|++++|++. .+|.....                                             
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~---------------------------------------------  207 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL---------------------------------------------  207 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh---------------------------------------------
Confidence            66 44444445666666666666665 33322110                                             


Q ss_pred             CCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeC
Q 043317          493 TSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDL  572 (700)
Q Consensus       493 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  572 (700)
                                             ...|+++++++|.+. ..+..+..+.++..+.+++|++. ..+..++.++.+++|++
T Consensus       208 -----------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~  262 (394)
T COG4886         208 -----------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDL  262 (394)
T ss_pred             -----------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecc
Confidence                                   123445555555433 34445555666666666666665 23555566666666666


Q ss_pred             CCCcCcccCcccccCCCCCCeEeccCCcCcccCCC
Q 043317          573 SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD  607 (700)
Q Consensus       573 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  607 (700)
                      ++|+++...+  +..+..++.|++++|.++...|.
T Consensus       263 s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         263 SNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccccccccc--ccccCccCEEeccCccccccchh
Confidence            6666663322  55666666666666666555443

>PLN03150 hypothetical protein; Provisional

Probab=99.28  E-value=7e-12  Score=139.02  Aligned_cols=90  Identities=34%  Similarity=0.536  Sum_probs=82.8

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCC-CCCCeEe
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIEL-NFLSNFN  595 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~  595 (700)
                      +.|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++|+++|.+|..+..+ ..+..++
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~  521 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN  521 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence            678899999999999999999999999999999999999999999999999999999999999999998774 4678899


Q ss_pred             ccCCcCcccCC
Q 043317          596 VSYNNLSGLIP  606 (700)
Q Consensus       596 ls~N~l~~~~p  606 (700)
                      +++|+..+..|
T Consensus       522 ~~~N~~lc~~p  532 (623)
T PLN03150        522 FTDNAGLCGIP  532 (623)
T ss_pred             ecCCccccCCC
Confidence            99998665454

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.21  E-value=2e-11  Score=129.65  Aligned_cols=103  Identities=37%  Similarity=0.424  Sum_probs=45.9

Q ss_pred             CCCcEEEcccCcCCCCcchhhcCCC-CCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEc
Q 043317          306 TKLYQLDISHNFLSGHIPHWMGNFS-NLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYV  384 (700)
Q Consensus       306 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l  384 (700)
                      +.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..++.|+.|++++|+++...+.....+.|+.|++
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            44555555555555 2333333332 5555555555554 3333344444444444444444444333223444444444


Q ss_pred             cCCcCccCcchhhhCCCCccEEECcCC
Q 043317          385 QKNALSGPIPDMLFRSSKLMTLDLRGN  411 (700)
Q Consensus       385 ~~n~l~~~~~~~~~~~~~L~~L~l~~N  411 (700)
                      ++|++. .+|........|+++.+++|
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            444444 33333323333444444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.21  E-value=4.1e-13  Score=136.32  Aligned_cols=213  Identities=26%  Similarity=0.321  Sum_probs=158.8

Q ss_pred             EEEccCCcCCccCCccc--cCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcc
Q 043317          213 VLDISNNHFEGNIPSSV--GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE  290 (700)
Q Consensus       213 ~L~L~~n~i~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  290 (700)
                      +|.|++-++. .+|..-  -.+.--...|++.|++.. +|..+ ..+..|+.+.++.|.+. .+|..+.++..|+.++++
T Consensus        54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~e-lp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFSE-LPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLS  129 (722)
T ss_pred             ccccccchhh-cCCCccccccccchhhhhcccccccc-CchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhc
Confidence            3445555544 233221  234445678899999864 66665 34778888888888885 456777888888999999


Q ss_pred             cCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccC
Q 043317          291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM  370 (700)
Q Consensus       291 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  370 (700)
                      .|+++ ..|..++.++ |+.|-+++|+++ .+|..++..+.|..||.+.|.+. .+|..++++.+|+.|.+..|.+...+
T Consensus       130 ~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp  205 (722)
T KOG0532|consen  130 SNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLP  205 (722)
T ss_pred             cchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCC
Confidence            99888 5666666664 888888999888 67777888888889999999887 67777888888999999988888777


Q ss_pred             CCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccC---CCCEEecCCCc
Q 043317          371 TSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR---RLGMMDLSHNR  436 (700)
Q Consensus       371 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~---~L~~L~Ls~N~  436 (700)
                      ++.. .-.|..||++.|+++ .+|-.|..|..|++|-|.+|.+. ..|..+|-.-   -.++|+..-++
T Consensus       206 ~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  206 EELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            7665 345888899999887 78888888999999999999888 5676665433   34566666663

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=8.4e-12  Score=116.97  Aligned_cols=208  Identities=24%  Similarity=0.244  Sum_probs=138.4

Q ss_pred             cchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccC-CcCccCcchhhhCC
Q 043317          322 IPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQK-NALSGPIPDMLFRS  400 (700)
Q Consensus       322 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~  400 (700)
                      .|-.+.-+.+|..+.++.+.-.. +......-+.|+++.+.+..++..+. ......+....-+. .-..|..-..+...
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTW  283 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDVPS-LLPETILADPSGSEPSTSNGSALVSADTW  283 (490)
T ss_pred             cccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccccccc-ccchhhhcCccCCCCCccCCceEEecchH
Confidence            33344556677788877775442 22222234577777776655543221 11111111111111 11122222223334


Q ss_pred             CCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccc
Q 043317          401 SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNS  480 (700)
Q Consensus       401 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (700)
                      ..|+++|+++|.|+ .+.++..-++.++.|++|+|.+..     +.++                                
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~nL--------------------------------  325 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQNL--------------------------------  325 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehhh--------------------------------
Confidence            67899999999998 677788888999999999998862     1111                                


Q ss_pred             ccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcc
Q 043317          481 TLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRS  560 (700)
Q Consensus       481 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  560 (700)
                                                       ..+++|+.||||+|.++ .+.+.-..+.+.+.|+|+.|.|.  .-..
T Consensus       326 ---------------------------------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSG  369 (490)
T KOG1259|consen  326 ---------------------------------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSG  369 (490)
T ss_pred             ---------------------------------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhh
Confidence                                             12478899999999998 55566667889999999999997  3456


Q ss_pred             cccccCCCEEeCCCCcCcccCc-ccccCCCCCCeEeccCCcCcccC
Q 043317          561 FSNLQMIESLDLSNNRLSGQIP-AQLIELNFLSNFNVSYNNLSGLI  605 (700)
Q Consensus       561 ~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~  605 (700)
                      ++++-+|..||+++|+|..... ..+++++.|+.+.+.+|++.+.+
T Consensus       370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            7889999999999999974322 36889999999999999999654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.3e-11  Score=121.79  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=18.6

Q ss_pred             CCcCcEEEcCCccccccc-ccccCCCCCCcEEEcccCccc
Q 043317          257 CISLWFLDLSDNNFYGQF-FSKDLNLTQMEFLYLENNKFS  295 (700)
Q Consensus       257 ~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  295 (700)
                      +++|++|+++.|++.... ...+..+++|+.|.+..|.++
T Consensus       300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            445555555555553211 122233455556666666555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=3.3e-11  Score=119.03  Aligned_cols=211  Identities=21%  Similarity=0.115  Sum_probs=118.7

Q ss_pred             CCCcccEEEeeCCCCCCcC--hhhcCCCCCCEEEccCCCCCccC-chHHhhcCCCCCEEEccCCcCcccCCC-CCCCCCC
Q 043317          110 PTFQLKVLELANCSLNVVP--TFLLHQYDLKYLDLSLNNLVGDF-PSWMLQNNTKLEVLFLTNNSFTGNLRL-PNTKHDF  185 (700)
Q Consensus       110 ~~~~L~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~  185 (700)
                      ++.+|+++.|.++.....+  .....+++++.||||.|-+..-. -..+.+.+++|+.|+++.|.+..-... .-..++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4557889999998886666  36678899999999999776322 234456888999999998887521111 1123455


Q ss_pred             ccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEc
Q 043317          186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDL  265 (700)
Q Consensus       186 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L  265 (700)
                      |+.|.++.|.++-.--.++...+|+|+.|++..|...........-+..|+.|||++|++.......             
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~-------------  265 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY-------------  265 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc-------------
Confidence            6666666666552222223333556666666666422222223333445555555555554322111             


Q ss_pred             CCcccccccccccCCCCCCcEEEcccCccccc-cccc-----ccCCCCCcEEEcccCcCCCC-cchhhcCCCCCcEEEcc
Q 043317          266 SDNNFYGQFFSKDLNLTQMEFLYLENNKFSGK-IEEG-----LLNSTKLYQLDISHNFLSGH-IPHWMGNFSNLEILLMS  338 (700)
Q Consensus       266 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~-----~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~  338 (700)
                                 ....++.|+.|+++.+.++.. .|+.     ....++|++|+++.|++.+. .-..+..+++|+.|.+.
T Consensus       266 -----------~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  266 -----------KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             -----------ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence                       223445555555555554432 1111     23456777777777777521 11223445667777777


Q ss_pred             cCcCcc
Q 043317          339 NNCLEG  344 (700)
Q Consensus       339 ~n~l~~  344 (700)
                      .|.++.
T Consensus       335 ~n~ln~  340 (505)
T KOG3207|consen  335 LNYLNK  340 (505)
T ss_pred             cccccc
Confidence            777663

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=2.1e-11  Score=117.26  Aligned_cols=247  Identities=21%  Similarity=0.245  Sum_probs=136.8

Q ss_pred             CCCCCCccEEeCCCCcCccccChhHHhhc---cCCcEEEccCCcCCc----cCCc-------cccCCCCCcEEEccCccC
Q 043317          180 NTKHDFLHHLDASSNNFIGTLPQDMGTIL---KKLLVLDISNNHFEG----NIPS-------SVGEMKELIILHLSKNNF  245 (700)
Q Consensus       180 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l---~~L~~L~L~~n~i~~----~~~~-------~l~~l~~L~~L~L~~n~l  245 (700)
                      ...+..++.+++++|.+...-...+...+   ++|+..++++- ++|    .+|+       .+..+++|++++||.|-+
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            34566677777777776544444444332   34555555542 222    1222       223344555555555555


Q ss_pred             CCCCchH---HHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCC-
Q 043317          246 SEDFSTP---FLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH-  321 (700)
Q Consensus       246 ~~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-  321 (700)
                      ....+..   +++++..|++|.|.+|.+.......++.  .|..|.         .......-+.|+++...+|++... 
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g  173 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGG  173 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence            4332222   1233444444444444332111111000  000000         011123346778888888877543 


Q ss_pred             ---cchhhcCCCCCcEEEcccCcCcc----cchhhccCCCCCCEEEccCccCcccCCCc----c-CCCCCcEEEccCCcC
Q 043317          322 ---IPHWMGNFSNLEILLMSNNCLEG----NIPVQLLNHRTLKLLSVSENYLSGSMTSS----F-NLSSLKHLYVQKNAL  389 (700)
Q Consensus       322 ---~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~-~l~~L~~L~l~~n~l  389 (700)
                         +...|...+.|+.+.+..|.|..    .....+..++.|+.|||.+|.++......    + .+++|++|++++|.+
T Consensus       174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence               23455667788888888887652    13345677888888888888776433222    2 467888888888888


Q ss_pred             ccCcchhhh-----CCCCccEEECcCCccccc----CChhhhccCCCCEEecCCCccC
Q 043317          390 SGPIPDMLF-----RSSKLMTLDLRGNNLEGQ----IPDQICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       390 ~~~~~~~~~-----~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  438 (700)
                      ...-...+.     ..++|++|.+.+|.|+..    +..++...+.|..|+|++|++.
T Consensus       254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            655443332     357899999999988732    2334456788999999999884

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=7e-11  Score=113.69  Aligned_cols=246  Identities=19%  Similarity=0.239  Sum_probs=157.5

Q ss_pred             hcCCCCCEEEccCCcCcc----cCCCCCCCCCCccEEeCCCCc---CccccChhHHh------hccCCcEEEccCCcCCc
Q 043317          157 QNNTKLEVLFLTNNSFTG----NLRLPNTKHDFLHHLDASSNN---FIGTLPQDMGT------ILKKLLVLDISNNHFEG  223 (700)
Q Consensus       157 ~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~---l~~~~~~~~~~------~l~~L~~L~L~~n~i~~  223 (700)
                      ..+..++.+++++|.+..    .+...+.+.+.|+..++++--   ....+|..+..      .+++|++|+||+|.+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            366789999999998853    333445677789999988642   22344444321      24689999999999875


Q ss_pred             cCCccc----cCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCccccc--
Q 043317          224 NIPSSV----GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGK--  297 (700)
Q Consensus       224 ~~~~~l----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--  297 (700)
                      ..+..|    ..+..|+.|.|.+|.+.......+.   ..|..|.  .+       .....-+.|+.+...+|++...  
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~---~al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga  174 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG---RALFELA--VN-------KKAASKPKLRVFICGRNRLENGGA  174 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH---HHHHHHH--HH-------hccCCCcceEEEEeeccccccccH
Confidence            555444    4578999999999988532222211   1122221  11       1122345677777777766532  


Q ss_pred             --ccccccCCCCCcEEEcccCcCCCC----cchhhcCCCCCcEEEcccCcCccc----chhhccCCCCCCEEEccCccCc
Q 043317          298 --IEEGLLNSTKLYQLDISHNFLSGH----IPHWMGNFSNLEILLMSNNCLEGN----IPVQLLNHRTLKLLSVSENYLS  367 (700)
Q Consensus       298 --~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~  367 (700)
                        +...+...+.|+.+.++.|.|...    ....|..+++|+.|||.+|.++..    +...++.++.|+.+++++|.+.
T Consensus       175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence              223445566777777777766422    234566777777777777777632    3344566677888888888776


Q ss_pred             ccCCCcc------CCCCCcEEEccCCcCccC----cchhhhCCCCccEEECcCCccc
Q 043317          368 GSMTSSF------NLSSLKHLYVQKNALSGP----IPDMLFRSSKLMTLDLRGNNLE  414 (700)
Q Consensus       368 ~~~~~~~------~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~N~l~  414 (700)
                      ......+      ..|+|+++.+.+|.++..    +...+...+.|..|++++|++.
T Consensus       255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            5443332      468899999999988643    2333455789999999999984

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=4.3e-11  Score=112.26  Aligned_cols=135  Identities=26%  Similarity=0.336  Sum_probs=110.4

Q ss_pred             ccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcE
Q 043317          302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKH  381 (700)
Q Consensus       302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~  381 (700)
                      +...+.|+++|||+|.|+ .+.+...-.|.++.|++++|.+.. +. .+..+++|+.||+++|.++........+-+.++
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence            344578999999999998 666777788999999999999973 33 388899999999999999877665558889999


Q ss_pred             EEccCCcCccCcchhhhCCCCccEEECcCCcccccC-ChhhhccCCCCEEecCCCccCCCC
Q 043317          382 LYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI-PDQICQLRRLGMMDLSHNRFNGSI  441 (700)
Q Consensus       382 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~  441 (700)
                      |.+++|.+..  -..+..+-+|..||+++|+|.... ...+++++.|+.+.|.+|++.+..
T Consensus       357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            9999999853  245677889999999999997432 346789999999999999998543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=1.5e-10  Score=104.74  Aligned_cols=127  Identities=24%  Similarity=0.210  Sum_probs=38.8

Q ss_pred             CCCCCCEEECCCCcCCcccchhcc-CCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcc
Q 043317           36 YLSHLKVLDISHNQLSGSLSSTIT-SLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQL  114 (700)
Q Consensus        36 ~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  114 (700)
                      +..++++|+|++|.|+.+  +.++ .+.+|+.|++++|.|+. ++  .+..+++|++|++++|.... +.......+++|
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc--CccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence            334455666666665532  1233 35556666666666552 22  35555666666665544322 211111235566


Q ss_pred             cEEEeeCCCCCCcC--hhhcCCCCCCEEEccCCCCCcc--CchHHhhcCCCCCEEEcc
Q 043317          115 KVLELANCSLNVVP--TFLLHQYDLKYLDLSLNNLVGD--FPSWMLQNNTKLEVLFLT  168 (700)
Q Consensus       115 ~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~L~  168 (700)
                      ++|++++|++..+.  ..+..+++|++|+|.+|.++..  ....+...+++|+.||-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            66666666664332  3455677888888888877632  122345577888887753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=5.2e-10  Score=101.25  Aligned_cols=81  Identities=30%  Similarity=0.287  Sum_probs=26.7

Q ss_pred             CCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCc-chhhhCCCCccEEECcCCcccccC---ChhhhccCC
Q 043317          352 NHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPI-PDMLFRSSKLMTLDLRGNNLEGQI---PDQICQLRR  426 (700)
Q Consensus       352 ~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~N~l~~~~---~~~~~~l~~  426 (700)
                      .++.|+.|++++|.|+...+... .+++|++|++++|++...- -..+..+++|++|++.+|+++...   ...+..+|+
T Consensus        62 ~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~  141 (175)
T PF14580_consen   62 GLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPS  141 (175)
T ss_dssp             --TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT
T ss_pred             ChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcCh
Confidence            34444444444444443322111 2444555555555443211 123445666666666666665321   124566777


Q ss_pred             CCEEec
Q 043317          427 LGMMDL  432 (700)
Q Consensus       427 L~~L~L  432 (700)
                      |+.||-
T Consensus       142 Lk~LD~  147 (175)
T PF14580_consen  142 LKVLDG  147 (175)
T ss_dssp             -SEETT
T ss_pred             hheeCC
Confidence            777774

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=3.8e-10  Score=83.85  Aligned_cols=60  Identities=43%  Similarity=0.581  Sum_probs=37.1

Q ss_pred             CCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcC
Q 043317          542 KIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL  601 (700)
Q Consensus       542 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  601 (700)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|.+|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666655555666666666666666666655556666666666666666654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.93  E-value=1.2e-10  Score=123.71  Aligned_cols=85  Identities=21%  Similarity=0.273  Sum_probs=55.8

Q ss_pred             cceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcc---cCccc-ccCCCCCCeE
Q 043317          519 MVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG---QIPAQ-LIELNFLSNF  594 (700)
Q Consensus       519 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~---~~p~~-l~~l~~L~~L  594 (700)
                      |+.+++++|++. ..+..+..+..+..|++++|++...  ..+.....+..+..+.|.+..   ..... ....+.++.+
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence            566777788777 4435566777788888888887632  234556677777777777652   11221 4556677788


Q ss_pred             eccCCcCcccCC
Q 043317          595 NVSYNNLSGLIP  606 (700)
Q Consensus       595 ~ls~N~l~~~~p  606 (700)
                      .+.+|+.....+
T Consensus       311 ~~~~~~~~~~~~  322 (414)
T KOG0531|consen  311 TLELNPIRKISS  322 (414)
T ss_pred             ccccCccccccc
Confidence            888888776554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=7.7e-10  Score=82.18  Aligned_cols=61  Identities=43%  Similarity=0.574  Sum_probs=57.5

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcC
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRL  577 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  577 (700)
                      ++|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999999988889999999999999999999998899999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.79  E-value=5.6e-10  Score=118.61  Aligned_cols=217  Identities=29%  Similarity=0.295  Sum_probs=128.3

Q ss_pred             CCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEcc
Q 043317          306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQ  385 (700)
Q Consensus       306 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~  385 (700)
                      ..++.++++.|.+.. +-..+..+.+|+.|++.+|.|.. +...+..+++|++|++++|.|+....-. .++.|+.|+++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l~  148 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNLS  148 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccchh-hccchhhheec
Confidence            344444455554442 22224445555556666555552 2222445566666666666665443322 34446677777


Q ss_pred             CCcCccCcchhhhCCCCccEEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCcc
Q 043317          386 KNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS  464 (700)
Q Consensus       386 ~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  464 (700)
                      +|.++..  ..+..+..|+.+++++|++...-+ . ...+.+++.+++.+|.+.......  .                 
T Consensus       149 ~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~--~-----------------  206 (414)
T KOG0531|consen  149 GNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD--L-----------------  206 (414)
T ss_pred             cCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH--H-----------------
Confidence            7776532  233446677777777777764333 1 466777777777777765211111  0                 


Q ss_pred             CCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcC--C
Q 043317          465 IFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQ--K  542 (700)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~  542 (700)
                                                                         +..+..+++..|.++...+  +..+.  .
T Consensus       207 ---------------------------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~  233 (414)
T KOG0531|consen  207 ---------------------------------------------------LKKLVLLSLLDNKISKLEG--LNELVMLH  233 (414)
T ss_pred             ---------------------------------------------------HHHHHHhhcccccceeccC--cccchhHH
Confidence                                                               1223334667777763322  22233  3


Q ss_pred             CcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcc
Q 043317          543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG  603 (700)
Q Consensus       543 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  603 (700)
                      |+.+++++|.+. ..+..+..+..++.||+++|++...  ..+.....+..+....|++..
T Consensus       234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~  291 (414)
T KOG0531|consen  234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLAL  291 (414)
T ss_pred             HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcc
Confidence            899999999998 4557788899999999999999854  235566677777888887763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=1.3e-08  Score=115.67  Aligned_cols=129  Identities=25%  Similarity=0.305  Sum_probs=82.3

Q ss_pred             CcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCC--CCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317          112 FQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNN--LVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL  189 (700)
Q Consensus       112 ~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  189 (700)
                      ...+...+-+|.+..++... .+++|++|-+..|.  +. .++..+|..++.|++|++++|.--+.+|..++.+-+|++|
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhhccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            35666667777665555443 23367777777775  43 6666666677777777777766555666666666677777


Q ss_pred             eCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCcc
Q 043317          190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNN  244 (700)
Q Consensus       190 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~  244 (700)
                      ++++..+. .+|..+.. +..|.+|++..+.....+|.....+++|++|.+....
T Consensus       601 ~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            77766655 66666665 5667777766665444445555556666666665543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.73  E-value=2.6e-08  Score=113.14  Aligned_cols=274  Identities=20%  Similarity=0.200  Sum_probs=125.9

Q ss_pred             CcCcEEEcCCcc--cccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEE
Q 043317          258 ISLWFLDLSDNN--FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEIL  335 (700)
Q Consensus       258 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  335 (700)
                      ++|++|-+..|.  +.......|..++.|+.||+++|.--+..|..++.+-+|++|++++..+. .+|..+.++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            344444444443  22222233444555555555555444455555555555555555555555 455555555555555


Q ss_pred             EcccCcCcccchhhccCCCCCCEEEccCccCcccCC--C-ccCCCCCcEEEccCCcCccCcchhhhCCCCcc----EEEC
Q 043317          336 LMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMT--S-SFNLSSLKHLYVQKNALSGPIPDMLFRSSKLM----TLDL  408 (700)
Q Consensus       336 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~L~l  408 (700)
                      ++..+.-...+|.....+++|++|.+-.-.......  . ...+.+|+.+.......  .+-..+..++.|.    .+.+
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~  701 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI  701 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence            555554433344444445555555554433111100  0 01334444444332221  0111112222222    2232


Q ss_pred             cCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccccc
Q 043317          409 RGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCK  488 (700)
Q Consensus       409 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (700)
                      .++... ..+..+..+.+|+.|.+.++.+...............                 .|.......     ...+ 
T Consensus       702 ~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~-----------------~f~~l~~~~-----~~~~-  757 (889)
T KOG4658|consen  702 EGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL-----------------CFPNLSKVS-----ILNC-  757 (889)
T ss_pred             cccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhh-----------------hHHHHHHHH-----hhcc-
Confidence            233322 3445566777777777777776532222211110000                 000000000     0000 


Q ss_pred             ccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccc-cCcccccccCC
Q 043317          489 RDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGS-IPRSFSNLQMI  567 (700)
Q Consensus       489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L  567 (700)
                          ..++.+..            ....++|+.|.+.++.....+.+....+..+..+-+..+.+.+. .-...++++++
T Consensus       758 ----~~~r~l~~------------~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i  821 (889)
T KOG4658|consen  758 ----HMLRDLTW------------LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQL  821 (889)
T ss_pred             ----ccccccch------------hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCcee
Confidence                00000000            01237888899998888777777777777777777777777765 34445555555


Q ss_pred             CEEeCCC
Q 043317          568 ESLDLSN  574 (700)
Q Consensus       568 ~~L~Ls~  574 (700)
                      ..+.++.
T Consensus       822 ~~~~l~~  828 (889)
T KOG4658|consen  822 YWLPLSF  828 (889)
T ss_pred             EecccCc
Confidence            5554443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.59  E-value=3.7e-09  Score=87.94  Aligned_cols=89  Identities=26%  Similarity=0.380  Sum_probs=59.3

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  596 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  596 (700)
                      +..+.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|..+..|.+|-.||..+|.+. .+|..+-.-+.....++
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l  153 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL  153 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence            45666778888887 67777888888888888888887 66777777888888888887776 44544333233333444


Q ss_pred             cCCcCcccCCCC
Q 043317          597 SYNNLSGLIPDK  608 (700)
Q Consensus       597 s~N~l~~~~p~~  608 (700)
                      .++++.+..|.+
T Consensus       154 gnepl~~~~~~k  165 (177)
T KOG4579|consen  154 GNEPLGDETKKK  165 (177)
T ss_pred             cCCcccccCccc
Confidence            555665555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=5.5e-09  Score=98.36  Aligned_cols=157  Identities=20%  Similarity=0.221  Sum_probs=93.6

Q ss_pred             CccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCc-cCCCCCchHHHhcCCcCcEE
Q 043317          185 FLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKN-NFSEDFSTPFLTGCISLWFL  263 (700)
Q Consensus       185 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L  263 (700)
                      .|+++||+...++..--..+...+.+|+.|.+.++++...+...+++-.+|+.|+++.+ .+++......+++|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            47888888777664444455556778888888888888777777888888888888875 35444445566777888888


Q ss_pred             EcCCcccccccccccC--CCCCCcEEEcccCccc---ccccccccCCCCCcEEEcccC-cCCCCcchhhcCCCCCcEEEc
Q 043317          264 DLSDNNFYGQFFSKDL--NLTQMEFLYLENNKFS---GKIEEGLLNSTKLYQLDISHN-FLSGHIPHWMGNFSNLEILLM  337 (700)
Q Consensus       264 ~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L  337 (700)
                      +++.|.+.........  --++|+.|+++++.-.   ..+..-...+++|.+||||+| .++...-..|..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            8888766543321111  1234566666655321   011112234556666666654 333333334445555555555


Q ss_pred             ccCc
Q 043317          338 SNNC  341 (700)
Q Consensus       338 ~~n~  341 (700)
                      +.|.
T Consensus       346 sRCY  349 (419)
T KOG2120|consen  346 SRCY  349 (419)
T ss_pred             hhhc
Confidence            5554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=4.7e-09  Score=98.85  Aligned_cols=178  Identities=22%  Similarity=0.226  Sum_probs=95.0

Q ss_pred             CCCEEECCCCcCCcc-cchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccC-CCCCCCcccE
Q 043317           39 HLKVLDISHNQLSGS-LSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTE-NFLPTFQLKV  116 (700)
Q Consensus        39 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~  116 (700)
                      +|++||||+..|+.. +-..++.|.+|+.|.+.++++.+.+. ..+++-.+|+.|+++.++-....... -+..++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            467777776666633 23344566777777777777665544 34666667777777666533222211 2345666777


Q ss_pred             EEeeCCCC-CCc-ChhhcC-CCCCCEEEccCCCC--CccCchHHhhcCCCCCEEEccCCc-CcccCCCCCCCCCCccEEe
Q 043317          117 LELANCSL-NVV-PTFLLH-QYDLKYLDLSLNNL--VGDFPSWMLQNNTKLEVLFLTNNS-FTGNLRLPNTKHDFLHHLD  190 (700)
Q Consensus       117 L~L~~n~l-~~~-p~~l~~-~~~L~~L~Ls~n~l--~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~  190 (700)
                      |++++|.+ ++. ...+.+ -++|+.|+|+++.=  ...--+.+...+++|..|+|++|. ++......+.+++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            77777766 221 111221 23566666666531  111112233466677777776653 3322333455666777777


Q ss_pred             CCCCcCccccChhHH--hhccCCcEEEccCC
Q 043317          191 ASSNNFIGTLPQDMG--TILKKLLVLDISNN  219 (700)
Q Consensus       191 l~~n~l~~~~~~~~~--~~l~~L~~L~L~~n  219 (700)
                      ++.|..  .+|..+.  ...+.|.+|++.++
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            777652  2333221  12456777776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.33  E-value=2.4e-08  Score=104.98  Aligned_cols=127  Identities=26%  Similarity=0.182  Sum_probs=89.3

Q ss_pred             CCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEc
Q 043317          306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYV  384 (700)
Q Consensus       306 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l  384 (700)
                      ..|...+.+.|++. .+..++.-++.++.|+|++|+++..  +.+..++.|++||++.|.+..++.-.. ++. |+.|.+
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence            35677777788776 5566677778888888888888732  267778888888888888876654444 444 888888


Q ss_pred             cCCcCccCcchhhhCCCCccEEECcCCcccccC-ChhhhccCCCCEEecCCCccC
Q 043317          385 QKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI-PDQICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       385 ~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~  438 (700)
                      ++|.++..  ..+.++.+|+.||+++|-+.+.. -..+..+..|+.|.|.+|++-
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88887632  34567788888888888776432 123456677788888888764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=2.7e-07  Score=86.06  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=18.7

Q ss_pred             CCCCCCEEECCCCcCCcc----cchhccCCCCCCEEeCCC
Q 043317           36 YLSHLKVLDISHNQLSGS----LSSTITSLTSLEYLDLSY   71 (700)
Q Consensus        36 ~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~   71 (700)
                      .+..++.+|||+|.|...    +...+.+-.+|+..++|.
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd   67 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD   67 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence            355566666666665533    223344445555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=3.8e-08  Score=103.55  Aligned_cols=127  Identities=30%  Similarity=0.296  Sum_probs=84.5

Q ss_pred             CCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEc
Q 043317          210 KLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYL  289 (700)
Q Consensus       210 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  289 (700)
                      +|...+.+.|++. ..-.++.-++.++.|+|++|+++..   .++..|++|++|||++|.+....--....+. |..|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence            4667777777776 4455566677788888888887652   2456678888888888877654433333444 777888


Q ss_pred             ccCcccccccccccCCCCCcEEEcccCcCCCCcc-hhhcCCCCCcEEEcccCcCc
Q 043317          290 ENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP-HWMGNFSNLEILLMSNNCLE  343 (700)
Q Consensus       290 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~  343 (700)
                      ++|.++..  ..+.++.+|+.||+++|-+.+.-. ..++.+..|+.|.|.+|.+-
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88877643  346677788888888887654311 22445566777777777764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=4.4e-07  Score=85.81  Aligned_cols=216  Identities=21%  Similarity=0.154  Sum_probs=118.2

Q ss_pred             ccCCCCCCEEECCCCcCCcccc-hhc-cCCCCCCEEeCCCCcCCCCCCh-hhccCCCCCcEEEcccCccccccccCCCCC
Q 043317           34 LKYLSHLKVLDISHNQLSGSLS-STI-TSLTSLEYLDLSYNNFEGPCPL-SSLANHSKLEVLLLSSTNNMLLVKTENFLP  110 (700)
Q Consensus        34 ~~~l~~L~~L~Ls~n~i~~~~~-~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  110 (700)
                      +..+.-++.|.+.++.|...-. ..| ..++.++.+||.+|.|+..... ..+.++|.|++|+++.|.....|.... .+
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p  119 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LP  119 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-cc
Confidence            3444455566677776653321 123 4567888888888888753211 235677777777777776655444322 45


Q ss_pred             CCcccEEEeeCCCC--CCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccE
Q 043317          111 TFQLKVLELANCSL--NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH  188 (700)
Q Consensus       111 ~~~L~~L~L~~n~l--~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  188 (700)
                      ..+|++|-|.+..+  +.....+..++.+++|++|.|.+..               +++..+.+..       -.+.+.+
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq---------------~n~Dd~c~e~-------~s~~v~t  177 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ---------------LNLDDNCIED-------WSTEVLT  177 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh---------------hccccccccc-------cchhhhh
Confidence            55677777766666  4444555566666666666664321               0111111110       0112222


Q ss_pred             EeCCCCcCcccc-ChhHHhhccCCcEEEccCCcCCcc-CCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcC
Q 043317          189 LDASSNNFIGTL-PQDMGTILKKLLVLDISNNHFEGN-IPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLS  266 (700)
Q Consensus       189 L~l~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~  266 (700)
                      +....|...-.. -..+...++++..+-+..|.+... ....+..++.+.-|+|+.++|......+.+.+++.|..|.++
T Consensus       178 lh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~  257 (418)
T KOG2982|consen  178 LHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVS  257 (418)
T ss_pred             hhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeecc
Confidence            222222211000 011233466777787877766532 223445566677788888888665555556667777777777


Q ss_pred             Cccccc
Q 043317          267 DNNFYG  272 (700)
Q Consensus       267 ~n~l~~  272 (700)
                      ++.+..
T Consensus       258 ~~Pl~d  263 (418)
T KOG2982|consen  258 ENPLSD  263 (418)
T ss_pred             CCcccc
Confidence            777654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.14  E-value=6.4e-07  Score=83.61  Aligned_cols=183  Identities=21%  Similarity=0.190  Sum_probs=100.9

Q ss_pred             cCCcCcEEEcCCcccccccccc----cCCCCCCcEEEcccCccccccccc-------------ccCCCCCcEEEcccCcC
Q 043317          256 GCISLWFLDLSDNNFYGQFFSK----DLNLTQMEFLYLENNKFSGKIEEG-------------LLNSTKLYQLDISHNFL  318 (700)
Q Consensus       256 ~~~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~-------------~~~~~~L~~L~Ls~n~l  318 (700)
                      +||.|+..+||+|.+....|..    +..-+.|+.|.+++|.+.-.....             ..+-+.|+..+...|++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            4566666666666655444432    234456666666666554211111             12346777777777776


Q ss_pred             CCCc----chhhcCCCCCcEEEcccCcCccc-----chhhccCCCCCCEEEccCccCcccCCCcc-----CCCCCcEEEc
Q 043317          319 SGHI----PHWMGNFSNLEILLMSNNCLEGN-----IPVQLLNHRTLKLLSVSENYLSGSMTSSF-----NLSSLKHLYV  384 (700)
Q Consensus       319 ~~~~----~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~l~~L~~L~l  384 (700)
                      ..-.    ...+..-.+|+++.+..|.|.-.     .-..+..+.+|+.||+..|.++.......     .++.|++|.+
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence            5211    11222335677777777766522     11223456777788887777764332221     3456777888


Q ss_pred             cCCcCccCcchhhh------CCCCccEEECcCCcccccCChh-----h--hccCCCCEEecCCCccC
Q 043317          385 QKNALSGPIPDMLF------RSSKLMTLDLRGNNLEGQIPDQ-----I--CQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       385 ~~n~l~~~~~~~~~------~~~~L~~L~l~~N~l~~~~~~~-----~--~~l~~L~~L~Ls~N~l~  438 (700)
                      .+|-++..-...+.      ..++|..|...+|.+.+.+-..     +  ..++-|..+.+.+|++.
T Consensus       250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            77777654333322      2467777777777665332111     1  24556666666777765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=9.5e-07  Score=83.61  Aligned_cols=136  Identities=18%  Similarity=0.166  Sum_probs=85.9

Q ss_pred             CCCCCCEEECCCCcCCcc--cchhccCCCCCCEEeCCCCcCCCCCChhhc-cCCCCCcEEEcccCccccccccCCCCCCC
Q 043317           36 YLSHLKVLDISHNQLSGS--LSSTITSLTSLEYLDLSYNNFEGPCPLSSL-ANHSKLEVLLLSSTNNMLLVKTENFLPTF  112 (700)
Q Consensus        36 ~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  112 (700)
                      ..++++.+||.+|.|+.-  +...+.++|.|++|+++.|.+...|.  .+ ....+|++|.|.+....-.........++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            578999999999999843  45567899999999999999986554  33 46779999999876544333333456778


Q ss_pred             cccEEEeeCCCCCCcC---hhhcCC-CCCCEEEccCCCCCccCc-hHHhhcCCCCCEEEccCCcCc
Q 043317          113 QLKVLELANCSLNVVP---TFLLHQ-YDLKYLDLSLNNLVGDFP-SWMLQNNTKLEVLFLTNNSFT  173 (700)
Q Consensus       113 ~L~~L~L~~n~l~~~p---~~l~~~-~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~  173 (700)
                      .+++|+++.|++..+-   ...... +.+++|++..|....-.. ..+..-++++..+.+..|.+.
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK  212 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK  212 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence            8999999999653221   111111 245555555543220000 001123456666666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=4.3e-06  Score=56.59  Aligned_cols=36  Identities=42%  Similarity=0.688  Sum_probs=17.5

Q ss_pred             CCcEEeCCCccCccccCcccccccCCCEEeCCCCcCc
Q 043317          542 KIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS  578 (700)
Q Consensus       542 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  578 (700)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 33434555555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.95  E-value=1e-05  Score=54.69  Aligned_cols=39  Identities=31%  Similarity=0.412  Sum_probs=29.2

Q ss_pred             cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCc
Q 043317          113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFP  152 (700)
Q Consensus       113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~  152 (700)
                      +|++|++++|+++.+|..+.++++|++|++++|+++ .++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            678888888888888877888888888888888877 444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.94  E-value=4.7e-07  Score=75.65  Aligned_cols=38  Identities=26%  Similarity=0.303  Sum_probs=15.2

Q ss_pred             CCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccc
Q 043317          376 LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLE  414 (700)
Q Consensus       376 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~  414 (700)
                      ++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus        99 m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   99 MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            334444444444443 23333333444444444444433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.89  E-value=2.3e-05  Score=70.43  Aligned_cols=108  Identities=19%  Similarity=0.195  Sum_probs=76.4

Q ss_pred             CCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccE
Q 043317           37 LSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKV  116 (700)
Q Consensus        37 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  116 (700)
                      +.+...+||++|.+...  ..|..++.|.+|.+++|+|+. +....-..+++|+.|.+.+|++....+......+++|++
T Consensus        41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhhc--ccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            34677889999988743  357788899999999999884 443444556788888888877655444555677778888


Q ss_pred             EEeeCCCCCCcCh----hhcCCCCCCEEEccCCCC
Q 043317          117 LELANCSLNVVPT----FLLHQYDLKYLDLSLNNL  147 (700)
Q Consensus       117 L~L~~n~l~~~p~----~l~~~~~L~~L~Ls~n~l  147 (700)
                      |.+-+|....-+.    .+..+++|++||+..-.-
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            8888887744432    345677888888766543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.85  E-value=6e-06  Score=91.74  Aligned_cols=145  Identities=23%  Similarity=0.281  Sum_probs=88.9

Q ss_pred             CCCCEEEeCccC------Cccc-cCCCCCCEEECCCCcCCcc-cchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCc
Q 043317           19 TILQVLDLSGSS------SNCL-KYLSHLKVLDISHNQLSGS-LSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLE   90 (700)
Q Consensus        19 ~~L~~L~Lsg~~------~~~~-~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~   90 (700)
                      ++|++||++|.-      |..+ ..+|+|++|.+++-.+... .-....++++|+.||+|+.+++..   ..++.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            568888888652      1222 3578888888888766533 234456788888888888888743   3577788888


Q ss_pred             EEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcChh-------hcCCCCCCEEEccCCCCCccCchHHhhcCCCCC
Q 043317           91 VLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTF-------LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLE  163 (700)
Q Consensus        91 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~-------l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  163 (700)
                      +|.+.+-.+........+..+++|++||+|.......+..       -..+++|+.||.|++.+...+-+.+...-++|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            8877643332222222455677777777777666333311       123667777777777776555555544444454


Q ss_pred             EEE
Q 043317          164 VLF  166 (700)
Q Consensus       164 ~L~  166 (700)
                      .+.
T Consensus       279 ~i~  281 (699)
T KOG3665|consen  279 QIA  281 (699)
T ss_pred             hhh
Confidence            443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.81  E-value=9.4e-07  Score=87.68  Aligned_cols=107  Identities=23%  Similarity=0.156  Sum_probs=54.2

Q ss_pred             CCCCEEECCCCcCCccc--chhccCCCCCCEEeCCCCc-CCCCCChhhccCCCCCcEEEcccCccccccccC-CCCCCCc
Q 043317           38 SHLKVLDISHNQLSGSL--SSTITSLTSLEYLDLSYNN-FEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTE-NFLPTFQ  113 (700)
Q Consensus        38 ~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~  113 (700)
                      ..|+.|.+.++.-.+.-  -..-.+++++++|++.++. +++..-...-..+++|++|++..|..++...-. ...++++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            46677777777544332  2233567777777777765 222111122345677777777665443332222 1234566


Q ss_pred             ccEEEeeCCCC---CCcChhhcCCCCCCEEEccC
Q 043317          114 LKVLELANCSL---NVVPTFLLHQYDLKYLDLSL  144 (700)
Q Consensus       114 L~~L~L~~n~l---~~~p~~l~~~~~L~~L~Ls~  144 (700)
                      |+++++++|.-   ..+......+..++.+.+.+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG  251 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG  251 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence            66666666643   11222233444445554444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.78  E-value=8.4e-05  Score=76.06  Aligned_cols=28  Identities=18%  Similarity=0.479  Sum_probs=14.8

Q ss_pred             cccEEEeeCC-CCCCcChhhcCCCCCCEEEccCCC
Q 043317          113 QLKVLELANC-SLNVVPTFLLHQYDLKYLDLSLNN  146 (700)
Q Consensus       113 ~L~~L~L~~n-~l~~~p~~l~~~~~L~~L~Ls~n~  146 (700)
                      +|++|++++| .+..+|.      +|+.|+++.+.
T Consensus        95 nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~  123 (426)
T PRK15386         95 GLEKLTVCHCPEISGLPE------SVRSLEIKGSA  123 (426)
T ss_pred             hhhheEccCccccccccc------ccceEEeCCCC
Confidence            5666666665 4444443      35555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=0.00013  Score=74.79  Aligned_cols=76  Identities=9%  Similarity=0.133  Sum_probs=52.1

Q ss_pred             ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCC-cccccCChhhhccCCCC
Q 043317          350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGN-NLEGQIPDQICQLRRLG  428 (700)
Q Consensus       350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~  428 (700)
                      +..+..++.|++++|.++..+ .  -.++|++|.+++|.-...+|+.+.  .+|++|++++| .+. .+|.      +|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccc
Confidence            455688999999999887665 2  145799999988654446666553  58889999888 454 4443      466


Q ss_pred             EEecCCCcc
Q 043317          429 MMDLSHNRF  437 (700)
Q Consensus       429 ~L~Ls~N~l  437 (700)
                      .|+++.+..
T Consensus       116 ~L~L~~n~~  124 (426)
T PRK15386        116 SLEIKGSAT  124 (426)
T ss_pred             eEEeCCCCC
Confidence            677766543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.62  E-value=0.00017  Score=62.87  Aligned_cols=122  Identities=16%  Similarity=0.261  Sum_probs=51.0

Q ss_pred             cccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCC
Q 043317           33 CLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTF  112 (700)
Q Consensus        33 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  112 (700)
                      +|.++++|+.+.+.. .+..+...+|.++++|+.+.+..+ +. .++...|.++++++.+.+..  ....++...|..+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc--cccccccccccccc
Confidence            455556666666653 355455556666666777766654 43 34445566666666666643  22344444566666


Q ss_pred             cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCC
Q 043317          113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKL  162 (700)
Q Consensus       113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  162 (700)
                      +|+.+++..+ +..++.....-.+|+.+.+.. .+. .++...|.++++|
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNCNLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT-T--EEE-TT-B-S-S----GGG-----
T ss_pred             cccccccCcc-ccEEchhhhcCCCceEEEECC-Ccc-EECCccccccccC
Confidence            6666666543 444443333223666666654 333 4555555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.57  E-value=0.00012  Score=65.98  Aligned_cols=85  Identities=24%  Similarity=0.194  Sum_probs=40.7

Q ss_pred             cCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCc-chhhhCCCCccEEECcCCcccccC---ChhhhccC
Q 043317          351 LNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPI-PDMLFRSSKLMTLDLRGNNLEGQI---PDQICQLR  425 (700)
Q Consensus       351 ~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~N~l~~~~---~~~~~~l~  425 (700)
                      ..++.|.+|.+++|.|+.+.+..- -+++|+.|.+.+|.+.... -.-+..|+.|++|.+-+|+++..-   --.++.++
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp  140 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP  140 (233)
T ss_pred             CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence            334444444444444444444333 3444555555555443110 012344566666666666654221   11345667


Q ss_pred             CCCEEecCCC
Q 043317          426 RLGMMDLSHN  435 (700)
Q Consensus       426 ~L~~L~Ls~N  435 (700)
                      +|+.||.+.=
T Consensus       141 ~l~~LDF~kV  150 (233)
T KOG1644|consen  141 SLRTLDFQKV  150 (233)
T ss_pred             cceEeehhhh
Confidence            7777776543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.52  E-value=5e-05  Score=84.55  Aligned_cols=106  Identities=24%  Similarity=0.175  Sum_probs=56.0

Q ss_pred             cccEEEeeCCCC--CCcChhhc-CCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317          113 QLKVLELANCSL--NVVPTFLL-HQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL  189 (700)
Q Consensus       113 ~L~~L~L~~n~l--~~~p~~l~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  189 (700)
                      +|++|+++|...  ...|..++ .+|+|+.|.+++-.+...--..++.++++|..||+++.+++..  ..++.+++|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            566666666554  33444443 4567777777666554222223445666666666666666532  334455555555


Q ss_pred             eCCCCcCcc-ccChhHHhhccCCcEEEccCCcC
Q 043317          190 DASSNNFIG-TLPQDMGTILKKLLVLDISNNHF  221 (700)
Q Consensus       190 ~l~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~i  221 (700)
                      .+.+-.+.. ..-.++|. +++|+.||+|..+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKN  232 (699)
T ss_pred             hccCCCCCchhhHHHHhc-ccCCCeeecccccc
Confidence            555443331 11124444 56666666665543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.45  E-value=0.00048  Score=60.06  Aligned_cols=59  Identities=20%  Similarity=0.225  Sum_probs=20.1

Q ss_pred             cCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcc
Q 043317          278 DLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS  338 (700)
Q Consensus       278 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  338 (700)
                      |.++++|+.+.+.. .+.......|..+++|+.+.+.++ +......+|..+++++.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            33444444444442 233333334444444444444443 332333344444444444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.44  E-value=1.3e-05  Score=79.91  Aligned_cols=274  Identities=17%  Similarity=0.105  Sum_probs=143.4

Q ss_pred             CCCEEEeCccCC-------ccccCCCCCCEEECCCCc-CCcccchhc-cCCCCCCEEeCCCC-cCCCCCChhhccCCCCC
Q 043317           20 ILQVLDLSGSSS-------NCLKYLSHLKVLDISHNQ-LSGSLSSTI-TSLTSLEYLDLSYN-NFEGPCPLSSLANHSKL   89 (700)
Q Consensus        20 ~L~~L~Lsg~~~-------~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L   89 (700)
                      .|+.|.+.|..+       ..-.+++++++|++.++. ++...-..+ ..+++|++|++..+ .+++..-...-..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            467777775532       233578888888888886 332222223 56889999999884 35433222234578899


Q ss_pred             cEEEcccCccccccccC-CCCCCCcccEEEeeCCCCCC---cChhhcCCCCCCEEEccCCCCCccCchH-HhhcCCCCCE
Q 043317           90 EVLLLSSTNNMLLVKTE-NFLPTFQLKVLELANCSLNV---VPTFLLHQYDLKYLDLSLNNLVGDFPSW-MLQNNTKLEV  164 (700)
Q Consensus        90 ~~L~l~~n~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~---~p~~l~~~~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~  164 (700)
                      +++++++|..+..-... -+.++..++.+.+.+|.-..   +-..-..+..+..+++..+...+....+ +...+.+||.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            99999988755442211 23455566666666653211   1111123344555555444322122211 1234556677


Q ss_pred             EEccCCcCcc-cCCCC-CCCCCCccEEeCCCCcCccc-cChhHHhhccCCcEEEccCCcCC--ccCCccccCCCCCcEEE
Q 043317          165 LFLTNNSFTG-NLRLP-NTKHDFLHHLDASSNNFIGT-LPQDMGTILKKLLVLDISNNHFE--GNIPSSVGEMKELIILH  239 (700)
Q Consensus       165 L~L~~n~l~~-~~~~~-~~~~~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~l~~l~~L~~L~  239 (700)
                      |..+++...+ ..-.. ..+..+|+.+.++.++--+. --..++...+.|+.+++..+...  +.+...-.+++.|+.+.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            7766654321 11111 13456677777766652211 11223344556777777666433  11222223566777777


Q ss_pred             ccCccCCCCCchHHH----hcCCcCcEEEcCCccccc-ccccccCCCCCCcEEEcccCc
Q 043317          240 LSKNNFSEDFSTPFL----TGCISLWFLDLSDNNFYG-QFFSKDLNLTQMEFLYLENNK  293 (700)
Q Consensus       240 L~~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~  293 (700)
                      ++++..........+    .+...|..+.++++.... .....+..+++|+.+++..++
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            776643322111111    234567777777776432 333445566777777776665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.01  E-value=0.0002  Score=67.41  Aligned_cols=113  Identities=26%  Similarity=0.253  Sum_probs=53.0

Q ss_pred             CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCC--cCCCCCChhhccCCCCCcEEEcccCccccccccCC
Q 043317           30 SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYN--NFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTEN  107 (700)
Q Consensus        30 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  107 (700)
                      +......+..|+.|++.+..++..  ..|-.+++|+.|++|.|  ++.+.++ .....+++|+++++++|.....-....
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nki~~lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNKIKDLSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCccccccccch
Confidence            333344445555555555555422  23445555666666666  3332222 123334566666666554322111112


Q ss_pred             CCCCCcccEEEeeCCCCCCcC----hhhcCCCCCCEEEccCC
Q 043317          108 FLPTFQLKVLELANCSLNVVP----TFLLHQYDLKYLDLSLN  145 (700)
Q Consensus       108 ~~~~~~L~~L~L~~n~l~~~p----~~l~~~~~L~~L~Ls~n  145 (700)
                      ...+.+|..|++.+|..+.+-    ..+.-+++|++||-...
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            334445666666666653332    12334567777764433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.78  E-value=0.00024  Score=77.82  Aligned_cols=35  Identities=26%  Similarity=0.205  Sum_probs=17.3

Q ss_pred             ccEEECcCCccccc-CChhhhc-cCCCCEEecCCCcc
Q 043317          403 LMTLDLRGNNLEGQ-IPDQICQ-LRRLGMMDLSHNRF  437 (700)
Q Consensus       403 L~~L~l~~N~l~~~-~~~~~~~-l~~L~~L~Ls~N~l  437 (700)
                      ++.|+++.+..... .-..... +..+..+++.++..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            66666666654311 1111111 55566666666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.73  E-value=0.00095  Score=63.01  Aligned_cols=113  Identities=22%  Similarity=0.170  Sum_probs=76.0

Q ss_pred             cchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCC-CCCCCcccEEEeeCCCCCCcC--hh
Q 043317           54 LSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTEN-FLPTFQLKVLELANCSLNVVP--TF  130 (700)
Q Consensus        54 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~p--~~  130 (700)
                      +......+..|+.|.+.+..++.   ...+-.+++|+.|.++.|+......... ...+++|+++++++|++..+.  ..
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence            44555667778888887777652   2357788999999999885433333222 234589999999999986431  22


Q ss_pred             hcCCCCCCEEEccCCCCCc--cCchHHhhcCCCCCEEEccC
Q 043317          131 LLHQYDLKYLDLSLNNLVG--DFPSWMLQNNTKLEVLFLTN  169 (700)
Q Consensus       131 l~~~~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~L~~  169 (700)
                      +..+.+|..|++.+|..+.  .--..+|.-+++|++|+-..
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            4567789999999987763  11234566778888776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.00018  Score=67.96  Aligned_cols=83  Identities=22%  Similarity=0.167  Sum_probs=51.0

Q ss_pred             ccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEc
Q 043317          186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDL  265 (700)
Q Consensus       186 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L  265 (700)
                      .+.|+.-++.+..   -.+...++.|+.|.|+-|+|+..-  .+..+++|++|+|..|.|.+...-.++.++++|+.|.|
T Consensus        21 vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   21 VKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             hhhhcccCCCccH---HHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            4445555555441   234444667777777777776433  36677777777777777766555555666677777777


Q ss_pred             CCcccccc
Q 043317          266 SDNNFYGQ  273 (700)
Q Consensus       266 ~~n~l~~~  273 (700)
                      ..|.-.+.
T Consensus        96 ~ENPCc~~  103 (388)
T KOG2123|consen   96 DENPCCGE  103 (388)
T ss_pred             ccCCcccc
Confidence            66655443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.00  E-value=0.002  Score=70.59  Aligned_cols=111  Identities=28%  Similarity=0.188  Sum_probs=49.6

Q ss_pred             CCCCCEEECCCCcCCcc--cchhccCCCCCCEEeCCCC-cCCCCCC---hhhccCCCCCcEEEcccCccccccccCCCC-
Q 043317           37 LSHLKVLDISHNQLSGS--LSSTITSLTSLEYLDLSYN-NFEGPCP---LSSLANHSKLEVLLLSSTNNMLLVKTENFL-  109 (700)
Q Consensus        37 l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-  109 (700)
                      .+.|+.|.+..+.-...  .-.....+++|+.|+++++ ......+   ......+++|+.|+++.+..........+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56666666665532222  2234455666666666652 1110111   112334456666666655432222211111 


Q ss_pred             CCCcccEEEeeCCC-CC--CcChhhcCCCCCCEEEccCCCC
Q 043317          110 PTFQLKVLELANCS-LN--VVPTFLLHQYDLKYLDLSLNNL  147 (700)
Q Consensus       110 ~~~~L~~L~L~~n~-l~--~~p~~l~~~~~L~~L~Ls~n~l  147 (700)
                      .+++|++|.+.+|. ++  .+-.....+++|++|+++.+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            14456666555554 32  1222233455566666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.96  E-value=0.00031  Score=66.40  Aligned_cols=87  Identities=22%  Similarity=0.148  Sum_probs=50.4

Q ss_pred             CCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccch-hhccCCCCCCEE
Q 043317          281 LTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIP-VQLLNHRTLKLL  359 (700)
Q Consensus       281 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L  359 (700)
                      +.+.+.|+..+|.++.+  .....++.|+.|.||-|+|+..-  .+..|++|++|+|..|.|..... .-+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44566677777776643  23445677777777777776442  35666777777777776653211 124555666666


Q ss_pred             EccCccCcccCC
Q 043317          360 SVSENYLSGSMT  371 (700)
Q Consensus       360 ~l~~n~l~~~~~  371 (700)
                      +|..|.-.+...
T Consensus        94 WL~ENPCc~~ag  105 (388)
T KOG2123|consen   94 WLDENPCCGEAG  105 (388)
T ss_pred             hhccCCcccccc
Confidence            666655544433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.80  E-value=0.0035  Score=35.14  Aligned_cols=18  Identities=50%  Similarity=0.824  Sum_probs=8.1

Q ss_pred             CCEEeCCCCcCcccCcccc
Q 043317          567 IESLDLSNNRLSGQIPAQL  585 (700)
Q Consensus       567 L~~L~Ls~N~l~~~~p~~l  585 (700)
                      |++|||++|+++ .+|.+|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.35  E-value=0.0069  Score=33.92  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=13.7

Q ss_pred             CCCEEECCCCcCCcccchhccC
Q 043317           39 HLKVLDISHNQLSGSLSSTITS   60 (700)
Q Consensus        39 ~L~~L~Ls~n~i~~~~~~~~~~   60 (700)
                      +|++|||++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677777777777 55555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.19  E-value=0.06  Score=27.86  Aligned_cols=15  Identities=33%  Similarity=0.585  Sum_probs=5.4

Q ss_pred             cccEEEeeCCCCCCc
Q 043317          113 QLKVLELANCSLNVV  127 (700)
Q Consensus       113 ~L~~L~L~~n~l~~~  127 (700)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.85  E-value=0.0045  Score=57.21  Aligned_cols=84  Identities=20%  Similarity=0.205  Sum_probs=69.5

Q ss_pred             ccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEe
Q 043317          516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN  595 (700)
Q Consensus       516 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  595 (700)
                      +...+.||++.|++. ..-..|.-++.+..|+++.|++. ..|..++.+..+..+++..|..+ ..|.++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            356677899999887 44556777888888999999988 78888888889999999888888 6688889999999999


Q ss_pred             ccCCcCc
Q 043317          596 VSYNNLS  602 (700)
Q Consensus       596 ls~N~l~  602 (700)
                      +-.|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8888865

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.20  E-value=0.0014  Score=69.93  Aligned_cols=85  Identities=25%  Similarity=0.192  Sum_probs=45.3

Q ss_pred             CCcEEEccCccCCCCCchHH---HhcCCcCcEEEcCCcccccccccc----cCCC-CCCcEEEcccCccccc----cccc
Q 043317          234 ELIILHLSKNNFSEDFSTPF---LTGCISLWFLDLSDNNFYGQFFSK----DLNL-TQMEFLYLENNKFSGK----IEEG  301 (700)
Q Consensus       234 ~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~~~~  301 (700)
                      .+..+.+.+|.+........   +...+.|+.|+++.|.+.+.....    +... ..+++|++..|.+++.    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            47778888888765433332   233456777777777775322211    1111 3345555555555532    2233


Q ss_pred             ccCCCCCcEEEcccCcC
Q 043317          302 LLNSTKLYQLDISHNFL  318 (700)
Q Consensus       302 ~~~~~~L~~L~Ls~n~l  318 (700)
                      +.....++.+|++.|.+
T Consensus       168 L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGL  184 (478)
T ss_pred             HhcccchhHHHHHhccc
Confidence            34455566666666654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.97  E-value=0.0025  Score=68.13  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             CCCCEEEccCccCcccCCCcc-----CCCCCcEEEccCCcCc
Q 043317          354 RTLKLLSVSENYLSGSMTSSF-----NLSSLKHLYVQKNALS  390 (700)
Q Consensus       354 ~~L~~L~l~~n~l~~~~~~~~-----~l~~L~~L~l~~n~l~  390 (700)
                      ..++.++++.|.|+.......     .++.++++.++.|.+.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            345555555555554332221     3556677777777664

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.78  E-value=0.13  Score=29.99  Aligned_cols=16  Identities=50%  Similarity=0.626  Sum_probs=8.6

Q ss_pred             cCCCEEeCCCCcCccc
Q 043317          565 QMIESLDLSNNRLSGQ  580 (700)
Q Consensus       565 ~~L~~L~Ls~N~l~~~  580 (700)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4555555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.78  E-value=0.13  Score=29.99  Aligned_cols=16  Identities=50%  Similarity=0.626  Sum_probs=8.6

Q ss_pred             cCCCEEeCCCCcCccc
Q 043317          565 QMIESLDLSNNRLSGQ  580 (700)
Q Consensus       565 ~~L~~L~Ls~N~l~~~  580 (700)
                      ++|++|+|++|+|+..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4555555555555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.56  E-value=0.26  Score=28.71  Aligned_cols=16  Identities=50%  Similarity=0.673  Sum_probs=7.9

Q ss_pred             CCCCEEECCCCcCCcc
Q 043317           38 SHLKVLDISHNQLSGS   53 (700)
Q Consensus        38 ~~L~~L~Ls~n~i~~~   53 (700)
                      ++|++|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.56  E-value=0.26  Score=28.71  Aligned_cols=16  Identities=50%  Similarity=0.673  Sum_probs=7.9

Q ss_pred             CCCCEEECCCCcCCcc
Q 043317           38 SHLKVLDISHNQLSGS   53 (700)
Q Consensus        38 ~~L~~L~Ls~n~i~~~   53 (700)
                      ++|++|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.47  E-value=0.031  Score=51.82  Aligned_cols=61  Identities=20%  Similarity=0.205  Sum_probs=51.2

Q ss_pred             ccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCc
Q 043317          516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS  578 (700)
Q Consensus       516 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  578 (700)
                      ++.+..||++.|.+. ..|..++.+..++.+++..|..+ ..|.+++.++.++.+++-.|.+.
T Consensus        64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            456677888888887 77888888888888888888887 78888999999999999988876

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.12  E-value=0.069  Score=48.69  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=19.5

Q ss_pred             CCCEEECCCCcCCcccchhccCCCCCCEEeCCCCc
Q 043317           39 HLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNN   73 (700)
Q Consensus        39 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   73 (700)
                      .++.+|-++..|..+--+.+.+++.++.|.+.++.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            34555666665555544555555555655555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.56  E-value=0.14  Score=46.88  Aligned_cols=81  Identities=21%  Similarity=0.147  Sum_probs=43.1

Q ss_pred             cCcEEEcCCcccccccccccCCCCCCcEEEcccCccccc-cccccc-CCCCCcEEEcccC-cCCCCcchhhcCCCCCcEE
Q 043317          259 SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGK-IEEGLL-NSTKLYQLDISHN-FLSGHIPHWMGNFSNLEIL  335 (700)
Q Consensus       259 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~-~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  335 (700)
                      .++.+|.++..|.....+.+.+++.++.|.+.+|+--+. .-+.++ -.++|+.|++++| +|++..-.++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            345555555555555555555666666666666642210 000111 2356677777766 4555555556666666666


Q ss_pred             Eccc
Q 043317          336 LMSN  339 (700)
Q Consensus       336 ~L~~  339 (700)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.62  E-value=0.36  Score=27.51  Aligned_cols=13  Identities=46%  Similarity=0.652  Sum_probs=4.6

Q ss_pred             CccEEECcCCccc
Q 043317          402 KLMTLDLRGNNLE  414 (700)
Q Consensus       402 ~L~~L~l~~N~l~  414 (700)
                      +|++|++++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            3444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	700
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-58
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-31
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-26
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-58
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-31
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-26
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-18

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  224 bits (571), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 208/653 (31%), Positives = 299/653 (45%), Gaps = 95/653 (14%)
Query: 23  VLDLSGSSSNCLKYLSHLKVLDISHNQXXXXXXXX---XXXXXXXEYLDLSYNNFEGPCP 79
            LD  G  S  LK L+ L+VLD+S N                   ++L +S N   G   
Sbjct: 137 TLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195
Query: 80  LSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKY 139
           +S   N   LE L +SS N             F   +  L +CS             L++
Sbjct: 196 VSRCVN---LEFLDVSSNN-------------FSTGIPFLGDCSA------------LQH 227
Query: 140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGT 199
           LD+S N L GDF S  +   T+L++L +++N F G   +P      L +L  + N F G 
Sbjct: 228 LDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGE 284
Query: 200 LPQDMGTILKKLLVLDISNNHFEGNIPSSVG-------------------------EMKE 234
           +P  +      L  LD+S NHF G +P   G                         +M+ 
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ-----MEFLYL 289
           L +L LS N FS +          SL  LDLS NNF G       NL Q     ++ LYL
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYL 401
Query: 290 ENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ 349
           +NN F+GKI   L N ++L  L +S N+LSG IP  +G+ S L  L +  N LEG IP +
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 350 LLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDL 408
           L+  +TL+ L +  N L+G + S   N ++L  + +  N L+G IP  + R   L  L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 409 RGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPP 468
             N+  G IP ++   R L  +DL+ N FNG+IP+      Q      +   G+      
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKR----- 574
Query: 469 LGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVE----FVTKN----RYELYNG------S 514
             + YI    N  +  E          Q ++ E      T+N       +Y G       
Sbjct: 575 --YVYI---KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSN 574
           N   M+ LD+S N L+G +P EIG +  +  LNL HN +SGSIP    +L+ +  LDLS+
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 575 NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCG 627
           N+L G+IP  +  L  L+  ++S NNLSG IP+ GQ+ TF  + +  N  LCG
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 227/463 (49%), Gaps = 42/463 (9%)
Query: 137 LKYLDLSLNNLVGDFP---SWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF---LHHLD 190
           LK+L++S N L  DFP   S  L+ N+ LEVL L+ NS +G   +     D    L HL 
Sbjct: 128 LKFLNVSSNTL--DFPGKVSGGLKLNS-LEVLDLSANSISGANVVGWVLSDGCGELKHLA 184
Query: 191 ASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFS 250
            S N   G +  D+   +  L  LD+S+N+F   IP  +G+   L  L +S N  S DFS
Sbjct: 185 ISGNKISGDV--DVSRCVN-LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240
Query: 251 TPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTK-LY 309
               T C  L  L++S N F G      L L  +++L L  NKF+G+I + L  +   L 
Sbjct: 241 RAIST-CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 310 QLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ-LLNHRTLKLLSVSENYLSG 368
            LD+S N   G +P + G+ S LE L +S+N   G +P+  LL  R LK+L +S N  SG
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 369 SMTSSF-NLS-SLKHLYVQKNALSGPIPDMLFRSSK--LMTLDLRGNNLEGQIPDQICQL 424
            +  S  NLS SL  L +  N  SGPI   L ++ K  L  L L+ N   G+IP  +   
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417
Query: 425 RRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDL 484
             L  + LS N  +G+IPS   ++ +  + ++ L+   L    P    Y+ T     LD 
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSK--LRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 485 EVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR 544
                           +   +    L N +NLN+   + LS N LTG +P  IG L+ + 
Sbjct: 476 N---------------DLTGEIPSGLSNCTNLNW---ISLSNNRLTGEIPKWIGRLENLA 517
Query: 545 GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE 587
            L LS+N  SG+IP    + + +  LDL+ N  +G IPA + +
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 198/433 (45%), Gaps = 64/433 (14%)
Query: 211 LLVLDISNNHFEGNIPS--SVGEMKELIILHLSKNNFSEDFSTPFLTGCI--SLWFLDLS 266
           L  LD+S N   G + +  S+G    L  L++S N    DF      G    SL  LDLS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 159
Query: 267 DN-----NFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH 321
            N     N  G   S      +++ L +  NK SG ++  +     L  LD+S N  S  
Sbjct: 160 ANSISGANVVGWVLSDGCG--ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 215
Query: 322 IPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKH 381
           IP ++G+ S L+ L +S N L G+    +     LKLL++S N   G +     L SL++
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQY 273
Query: 382 LYVQKNALSGPIPDMLFRSSKLMT-LDLRGNNLEGQIP---------------------- 418
           L + +N  +G IPD L  +   +T LDL GN+  G +P                      
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 419 ---DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS--IFPPLGFCY 473
              D + ++R L ++DLS N F+G +P   TN L  ++  +DL     S  I P L  C 
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTN-LSASLLTLDLSSNNFSGPILPNL--CQ 390
Query: 474 IGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNV 533
                 +TL     + + FT     K+     N  EL         V L LS N L+G +
Sbjct: 391 ---NPKNTLQELYLQNNGFTG----KIPPTLSNCSEL---------VSLHLSFNYLSGTI 434
Query: 534 PSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSN 593
           PS +G L K+R L L  N L G IP+    ++ +E+L L  N L+G+IP+ L     L+ 
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 594 FNVSYNNLSGLIP 606
            ++S N L+G IP
Sbjct: 495 ISLSNNRLTGEIP 507

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  224 bits (570), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 208/653 (31%), Positives = 299/653 (45%), Gaps = 95/653 (14%)
Query: 23  VLDLSGSSSNCLKYLSHLKVLDISHNQXXXXXXXX---XXXXXXXEYLDLSYNNFEGPCP 79
            LD  G  S  LK L+ L+VLD+S N                   ++L +S N   G   
Sbjct: 134 TLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 192
Query: 80  LSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKY 139
           +S   N   LE L +SS N             F   +  L +CS             L++
Sbjct: 193 VSRCVN---LEFLDVSSNN-------------FSTGIPFLGDCSA------------LQH 224
Query: 140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGT 199
           LD+S N L GDF S  +   T+L++L +++N F G   +P      L +L  + N F G 
Sbjct: 225 LDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGE 281
Query: 200 LPQDMGTILKKLLVLDISNNHFEGNIPSSVG-------------------------EMKE 234
           +P  +      L  LD+S NHF G +P   G                         +M+ 
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ-----MEFLYL 289
           L +L LS N FS +          SL  LDLS NNF G       NL Q     ++ LYL
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYL 398
Query: 290 ENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ 349
           +NN F+GKI   L N ++L  L +S N+LSG IP  +G+ S L  L +  N LEG IP +
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 350 LLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDL 408
           L+  +TL+ L +  N L+G + S   N ++L  + +  N L+G IP  + R   L  L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 409 RGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPP 468
             N+  G IP ++   R L  +DL+ N FNG+IP+      Q      +   G+      
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKR----- 571
Query: 469 LGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVE----FVTKN----RYELYNG------S 514
             + YI    N  +  E          Q ++ E      T+N       +Y G       
Sbjct: 572 --YVYI---KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSN 574
           N   M+ LD+S N L+G +P EIG +  +  LNL HN +SGSIP    +L+ +  LDLS+
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 575 NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCG 627
           N+L G+IP  +  L  L+  ++S NNLSG IP+ GQ+ TF  + +  N  LCG
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 160/480 (33%), Positives = 232/480 (48%), Gaps = 48/480 (10%)
Query: 137 LKYLDLSLNNLVGDFP---SWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF---LHHLD 190
           LK+L++S N L  DFP   S  L+ N+ LEVL L+ NS +G   +     D    L HL 
Sbjct: 125 LKFLNVSSNTL--DFPGKVSGGLKLNS-LEVLDLSANSISGANVVGWVLSDGCGELKHLA 181
Query: 191 ASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFS 250
            S N   G +  D+   +  L  LD+S+N+F   IP  +G+   L  L +S N  S DFS
Sbjct: 182 ISGNKISGDV--DVSRCVN-LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 237
Query: 251 TPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTK-LY 309
               T C  L  L++S N F G      L L  +++L L  NKF+G+I + L  +   L 
Sbjct: 238 RAIST-CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 310 QLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ-LLNHRTLKLLSVSENYLSG 368
            LD+S N   G +P + G+ S LE L +S+N   G +P+  LL  R LK+L +S N  SG
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 369 SMTSSF-NLS-SLKHLYVQKNALSGPIPDMLFRSSK--LMTLDLRGNNLEGQIPDQICQL 424
            +  S  NLS SL  L +  N  SGPI   L ++ K  L  L L+ N   G+IP  +   
Sbjct: 355 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 414
Query: 425 RRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDL 484
             L  + LS N  +G+IPS   ++ +  + ++ L+   L    P    Y+ T     LD 
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSK--LRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 485 EVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR 544
                           +   +    L N +NLN+   + LS N LTG +P  IG L+ + 
Sbjct: 473 N---------------DLTGEIPSGLSNCTNLNW---ISLSNNRLTGEIPKWIGRLENLA 514
Query: 545 GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQL------IELNFLSNFNVSY 598
            L LS+N  SG+IP    + + +  LDL+ N  +G IPA +      I  NF++     Y
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 198/433 (45%), Gaps = 64/433 (14%)
Query: 211 LLVLDISNNHFEGNIPS--SVGEMKELIILHLSKNNFSEDFSTPFLTGCI--SLWFLDLS 266
           L  LD+S N   G + +  S+G    L  L++S N    DF      G    SL  LDLS
Sbjct: 99  LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 156
Query: 267 DN-----NFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH 321
            N     N  G   S      +++ L +  NK SG ++  +     L  LD+S N  S  
Sbjct: 157 ANSISGANVVGWVLSDGCG--ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 212
Query: 322 IPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKH 381
           IP ++G+ S L+ L +S N L G+    +     LKLL++S N   G +     L SL++
Sbjct: 213 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQY 270
Query: 382 LYVQKNALSGPIPDMLFRSSKLMT-LDLRGNNLEGQIP---------------------- 418
           L + +N  +G IPD L  +   +T LDL GN+  G +P                      
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 419 ---DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS--IFPPLGFCY 473
              D + ++R L ++DLS N F+G +P   TN L  ++  +DL     S  I P L  C 
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTN-LSASLLTLDLSSNNFSGPILPNL--C- 386
Query: 474 IGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNV 533
                 +TL     + + FT     K+     N  EL         V L LS N L+G +
Sbjct: 387 --QNPKNTLQELYLQNNGFTG----KIPPTLSNCSEL---------VSLHLSFNYLSGTI 431
Query: 534 PSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSN 593
           PS +G L K+R L L  N L G IP+    ++ +E+L L  N L+G+IP+ L     L+ 
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 594 FNVSYNNLSGLIP 606
            ++S N L+G IP
Sbjct: 492 ISLSNNRLTGEIP 504

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 28/257 (10%)
Query: 375 NLSSLKHLYVQK-NALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLS 433
           NL  L  LY+   N L GPIP  + + ++L  L +   N+ G IPD + Q++ L  +D S
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 434 HNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFT 493
           +N  +G++P   +++    +  +   G  +S   P  +      + S        R+  T
Sbjct: 134 YNALSGTLPPSISSLPN--LVGITFDGNRISGAIPDSYGSFSKLFTSM----TISRNRLT 187
Query: 494 SPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL 553
              ++   F           +NLN +  +DLS N L G+     G  +  + ++L+ N L
Sbjct: 188 G--KIPPTF-----------ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 554 S---GSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQ 610
           +   G +  S    + +  LDL NNR+ G +P  L +L FL + NVS+NNL G IP  G 
Sbjct: 234 AFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289
Query: 611 YSTFDESSYRGNLYLCG 627
              FD S+Y  N  LCG
Sbjct: 290 LQRFDVSAYANNKCLCG 306

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	700
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-152
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-103
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-100
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-70
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-55
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-22
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  460 bits (1185), Expect = e-152
 Identities = 205/671 (30%), Positives = 307/671 (45%), Gaps = 59/671 (8%)

Query: 2   SGSLTNLYIFLTGLANLTILQVLDLSG--------SSSNCLKYLSHLKVLDISHNQLSGS 53
           S +  +    ++G   L  L+VLDLS                    LK L IS N++SG 
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193

Query: 54  LSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQ 113
           +   ++   +LE+LD+S NNF    P   L + S L+ L +S   N L            
Sbjct: 194 VD--VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDIS--GNKL----SGDFSR-- 241

Query: 114 LKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFT 173
                ++ C+            +LK L++S N  VG  P   L++   L+ L L  N FT
Sbjct: 242 ----AISTCT------------ELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFT 282

Query: 174 GNL------RLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIP- 226
           G +               L  LD S N+F G +P   G+    L  L +S+N+F G +P 
Sbjct: 283 GEIPDFLSGACDT-----LTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPM 336

Query: 227 SSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLN--LTQM 284
            ++ +M+ L +L LS N FS +          SL  LDLS NNF G             +
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 285 EFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG 344
           + LYL+NN F+GKI   L N ++L  L +S N+LSG IP  +G+ S L  L +  N LEG
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 345 NIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKL 403
            IP +L+  +TL+ L +  N L+G + S   N ++L  + +  N L+G IP  + R   L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 404 MTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL 463
             L L  N+  G IP ++   R L  +DL+ N FNG+IP+           N  + G   
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN-FIAGKRY 575

Query: 464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRY---ELYNGSNLNYMV 520
                 G         + L+ +  + +            +T   Y         N   M+
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 521 GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ 580
            LD+S N L+G +P EIG +  +  LNL HN +SGSIP    +L+ +  LDLS+N+L G+
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 581 IPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEET 640
           IP  +  L  L+  ++S NNLSG IP+ GQ+ TF  + +  N  LCG  + +   S  + 
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755

Query: 641 PAIKSKGREDE 651
            A   +     
Sbjct: 756 YAHHQRSHHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  331 bits (850), Expect = e-103
 Identities = 172/619 (27%), Positives = 258/619 (41%), Gaps = 91/619 (14%)

Query: 15  LANLTILQVLDLSGSSSNC----LKYLSHLKVLDISHNQLSGSLSS--TITSLTSLEYLD 68
           L +LT L+ L LS S  N      K  + L  LD+S N LSG +++  ++ S + L++L+
Sbjct: 73  LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSSTN----NMLLVKTENFLPTFQLKVLELANCSL 124
           +S N  + P  +S     + LEVL LS+ +    N++     +     +LK L ++   +
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG--ELKHLAISGNKI 190

Query: 125 N-VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL-----RL 178
           +  V         L++LD+S NN     P   L + + L+ L ++ N  +G+        
Sbjct: 191 SGDVDVSRCVN--LEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTC 246

Query: 179 PNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-GEMKELII 237
                  L  L+ SSN F+G +P      LK L  L ++ N F G IP  + G    L  
Sbjct: 247 TE-----LKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 238 LHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL-NLTQMEFLYLENNKFSG 296
           L LS N+F      PF   C  L  L LS NNF G+     L  +  ++ L L  N+FSG
Sbjct: 299 LDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 297 KIEEGLLN-STKLYQLDISHNFLSGHIPHWMGNF--SNLEILLMSNNCLEGNIPVQLLNH 353
           ++ E L N S  L  LD+S N  SG I   +     + L+ L + NN   G IP  L N 
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

Query: 354 RTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNN 412
             L  L +S NYLSG++ SS  +LS L+ L +  N L G IP  L     L TL L  N+
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 413 LEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS--IFPPLG 470
           L G+IP  +     L  + LS+NR  G IP     +    +  + L     S  I   LG
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN--LAILKLSNNSFSGNIPAELG 535

Query: 471 FCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELT 530
            C                                          +L +   LDL+ N   
Sbjct: 536 DC-----------------------------------------RSLIW---LDLNTNLFN 551

Query: 531 GNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN--RLSGQIPAQLIEL 588
           G +P+ +          ++ N ++G       N  M +    + N     G    QL  L
Sbjct: 552 GTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

Query: 589 NFLSNFNVSYNNLSGLIPD 607
           +  +  N++     G    
Sbjct: 608 STRNPCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  323 bits (829), Expect = e-100
 Identities = 154/603 (25%), Positives = 257/603 (42%), Gaps = 73/603 (12%)

Query: 38  SHLKVLDISHNQLS---GSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLL 94
             +  +D+S   L+    ++SS++ SLT LE L LS ++  G   +S     + L  L L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDL 107

Query: 95  SSTN-NMLLVKTENFLPTFQLKVLELANCSLNVV--PTFLLHQYDLKYLDLSLNNLVGDF 151
           S  + +  +    +      LK L +++ +L+     +  L    L+ LDLS N++ G  
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 152 PSWMLQNN--TKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILK 209
               + ++   +L+ L ++ N  +G++ +    +  L  LD SSNNF   +P  +G    
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN--LEFLDVSSNNFSTGIPF-LGD-CS 223

Query: 210 KLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN 269
            L  LDIS N   G+   ++    EL +L++S N F             SL +L L++N 
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENK 280

Query: 270 FYGQF-FSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP-HWMG 327
           F G+           +  L L  N F G +     + + L  L +S N  SG +P   + 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 328 NFSNLEILLMSNNCLEGNIPVQLLN-HRTLKLLSVSENYLSGSMTSSF---NLSSLKHLY 383
               L++L +S N   G +P  L N   +L  L +S N  SG +  +      ++L+ LY
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 384 VQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPS 443
           +Q N  +G IP  L   S+L++L L  N L G IP  +  L +L  + L  N   G IP 
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 444 CFTNMLQWTIENVDLFGGELS-IFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEF 502
               +    +E + L   +L+   P                                   
Sbjct: 461 ELMYVKT--LETLILDFNDLTGEIPS---------------------------------- 484

Query: 503 VTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFS 562
                  L N +NLN+   + LS N LTG +P  IG L+ +  L LS+N  SG+IP    
Sbjct: 485 ------GLSNCTNLNW---ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 563 NLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGN 622
           + + +  LDL+ N  +G IPA + + +      ++ N ++G      +     +  +   
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 623 LYL 625
             L
Sbjct: 592 NLL 594

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 4e-08
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 539 DLQKIRGLNLSHNCLS---GSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN 595
              K+  ++LS   L+    ++  S  +L  +ESL LSN+ ++G +         L++ +
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 596 VSYNNLSGLIPDKGQ 610
           +S N+LSG +     
Sbjct: 107 LSRNSLSGPVTTLTS 121

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  250 bits (640), Expect = 2e-73
 Identities = 120/623 (19%), Positives = 206/623 (33%), Gaps = 72/623 (11%)

Query: 15  LANLTILQVLDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
               + L  LD+             + L  LKVL++ HN+LS     T    T+L  L L
Sbjct: 45  FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
             N+ +     +       L  L LS  N +   K    +    L+ L L+N  +  + +
Sbjct: 105 MSNSIQKI-KNNPFVKQKNLITLDLSH-NGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 130 ---FLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL---RLPNTKH 183
               +     LK L+LS N +    P        +L  LFL N     +L         +
Sbjct: 163 EELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 184 DFLHHLDASSNNFIGTLPQDM--GTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLS 241
             + +L  S++  + T       G     L +LD+S N+       S   + +L    L 
Sbjct: 222 TSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 242 KNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL---------NLTQMEFLYLENN 292
            NN      +  L G  ++ +L+L  +          L          L  +E L +E+N
Sbjct: 281 YNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 293 KFSGKIEEGLLNSTKLYQLDISHNFLSGHIPH----WMGNFSNLEILLMSNNCLEGNIPV 348
              G           L  L +S++F S              S L IL ++ N +      
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 349 QLLNHRTLKLLSVSENYLSGSMTSSF--NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTL 406
                  L++L +  N +   +T      L ++  +Y+  N       +       L  L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 407 DLRGNNLEG--QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS 464
            LR   L+     P     LR L ++DLS+N            + +  +E +DL    L+
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK--LEILDLQHNNLA 517

Query: 465 IFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDL 524
                                                      Y L   S+L+    L+L
Sbjct: 518 RLWKHANPGG-------------------------------PIYFLKGLSHLHI---LNL 543

Query: 525 SCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQ 584
             N           DL +++ ++L  N L+      F+N   ++SL+L  N ++      
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 585 LIE-LNFLSNFNVSYNNLSGLIP 606
                  L+  ++ +N       
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  241 bits (617), Expect = 3e-70
 Identities = 114/624 (18%), Positives = 202/624 (32%), Gaps = 85/624 (13%)

Query: 21  LQVLDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFE 75
           + VL+L+        +      S L  LD+  N +S         L  L+ L+L +N   
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 76  GPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ- 134
                 + A  + L  L L S N++  +K   F+    L  L+L++  L+        Q 
Sbjct: 87  QL-SDKTFAFCTNLTELHLMS-NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 135 YDLKYLDLSLNNLVGDFPSWMLQ--NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS 192
            +L+ L LS N +     S  L    N+ L+ L L++N               L  L  +
Sbjct: 145 ENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 193 SNNFIGTLPQD--MGTILKKLLVLDISNNHFEGNIPSSVGEMK--ELIILHLSKNNFSED 248
           +     +L +   +      +  L +SN+       ++   +K   L +L LS NN +  
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV- 262

Query: 249 FSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS--- 305
                      L +  L  NN    F      L  + +L L+ +     I    L     
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 306 ------TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPV----QLLNHRT 355
                   L  L++  N + G   +      NL+ L +SN+              L H  
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 356 LKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNL 413
           L +L++++N +S   + +F  L  L+ L +  N +   +    +R    +  + L  N  
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 414 EGQIPDQICQLRRLGMMDLSHNRFNG--SIPSCFTNMLQWTIENVDLFGGELSIFPPLGF 471
                +    +  L  + L         S PS F  +    +  +DL    ++       
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN--LTILDLSNNNIANINDDML 500

Query: 472 CYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELT- 530
                                                       L  +  LDL  N L  
Sbjct: 501 E------------------------------------------GLEKLEILDLQHNNLAR 518

Query: 531 -------GNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPA 583
                  G     +  L  +  LNL  N         F +L  ++ +DL  N L+    +
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 584 QLIELNFLSNFNVSYNNLSGLIPD 607
                  L + N+  N ++ +   
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  206 bits (525), Expect = 2e-57
 Identities = 108/595 (18%), Positives = 199/595 (33%), Gaps = 69/595 (11%)

Query: 62  TSLEYLDLSYNNFEG-PCPL-------------------SSLANHSKLEVLLLSSTNNML 101
            S E  D S+      P  L                   ++   +S+L  L +   N + 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF-NTIS 62

Query: 102 LVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYD-LKYLDLSLNNLVGDFPSWMLQNNT 160
            ++ E       LKVL L +  L+ +          L  L L  N++     +       
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQK 121

Query: 161 KLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTI-LKKLLVLDISNN 219
            L  L L++N  +        + + L  L  S+N       +++       L  L++S+N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 220 HFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGC--ISLWFLDLSDNNFYG--QFF 275
             +   P     +  L  L L+        +          S+  L LS++         
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 276 SKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEIL 335
              L  T +  L L  N  +    +      +L    + +N +     H +    N+  L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 336 LMSNNCLEGNIPVQLLNH---------RTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQ 385
            +  +  + +I +  L           + L+ L++ +N + G  ++ F  L +LK+L + 
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 386 KNALS-GPIPDMLFRS---SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSI 441
            +  S   + +  F S   S L  L+L  N +     D    L  L ++DL  N     +
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

Query: 442 P-SCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKV 500
               +  +    I  + L   +        F  + +     L L           ++V +
Sbjct: 422 TGQEWRGLEN--IFEIYLSYNKYLQLTRNSFALVPSL--QRLML-----------RRVAL 466

Query: 501 EFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLS------ 554
           + V  +        NL     LDLS N +       +  L+K+  L+L HN L+      
Sbjct: 467 KNVDSSPSPFQPLRNLTI---LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

Query: 555 --GSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
             G        L  +  L+L +N           +L  L   ++  NNL+ L   
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  186 bits (474), Expect = 2e-50
 Identities = 89/454 (19%), Positives = 161/454 (35%), Gaps = 42/454 (9%)

Query: 15  LANLTILQVLDLSG--------SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSL--TSL 64
              +  L  L L+                  + ++ L +S++QLS + ++T   L  T+L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 65  EYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSL 124
             LDLSYNN        S A   +LE   L   NN+  + + +    F ++ L L     
Sbjct: 251 TMLDLSYNNLNVVGN-DSFAWLPQLEYFFLEY-NNIQHLFSHSLHGLFNVRYLNLKR--- 305

Query: 125 NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHD 184
                            +SL +L      +  Q    LE L + +N   G      T   
Sbjct: 306 -----------SFTKQSISLASLPK-IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 185 FLHHLDASSNNF-IGTLPQD--MGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLS 241
            L +L  S++   + TL  +  +      L +L+++ N        +   +  L +L L 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 242 KNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSG--KIE 299
            N   ++ +     G  +++ + LS N +     +    +  ++ L L            
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 300 EGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE--------GNIPVQLL 351
                   L  LD+S+N ++      +     LEIL + +N L         G     L 
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533

Query: 352 NHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRG 410
               L +L++  N         F +L  LK + +  N L+     +      L +L+L+ 
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593

Query: 411 NNLEGQIPDQIC-QLRRLGMMDLSHNRFNGSIPS 443
           N +            R L  +D+  N F+ +  S
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  178 bits (453), Expect = 1e-47
 Identities = 83/436 (19%), Positives = 155/436 (35%), Gaps = 31/436 (7%)

Query: 12  LTGLANLTILQVLDLSG-------SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSL 64
           L      T ++ L LS        +++      ++L +LD+S+N L+   + +   L  L
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274

Query: 65  EYLDLSYNNFEGPCPLSSLANHSKLEVLLLS--------STNNMLLVKTENFLPTFQLKV 116
           EY  L YNN +      SL     +  L L         S  ++  +   +F     L+ 
Sbjct: 275 EYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 117 LELANCSLNVVPTFLLHQ-YDLKYLDLSLNNL-VGDFPSWMLQN--NTKLEVLFLTNNSF 172
           L + +  +  + + +     +LKYL LS +   +    +    +  ++ L +L LT N  
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 173 TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM 232
           +       +    L  LD   N     L       L+ +  + +S N +     +S   +
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 233 KELIILHLSKNNFSE-DFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLEN 291
             L  L L +      D S        +L  LDLS+NN           L ++E L L++
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 292 NKFS--------GKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE 343
           N  +        G     L   + L+ L++  N           +   L+I+ +  N L 
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 344 GNIPVQLLNHRTLKLLSVSENYLSGSMTSSF--NLSSLKHLYVQKNALSGPIPDMLFRSS 401
                   N  +LK L++ +N ++      F     +L  L ++ N        + +  +
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

Query: 402 KLMTLDLRGNNLEGQI 417
            +         L    
Sbjct: 634 WINETHTNIPELSSHY 649

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  225 bits (575), Expect = 1e-64
 Identities = 81/598 (13%), Positives = 166/598 (27%), Gaps = 85/598 (14%)

Query: 37  LSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
              +  L +     SG +   I  LT LE L L  +  +    L      S         
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 97  TNNMLLVKTENFLPTFQ-LKVLELANCSLN------VVPTFLLHQYDLKYLDLSLNNLVG 149
              M     + F+         +L    +N       +            +    NN+  
Sbjct: 140 KMRMHY--QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 150 DFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILK 209
                 +   TKL   ++ N+ F               + ++       T        LK
Sbjct: 198 -VSKA-VMRLTKLRQFYMGNSPFVAENICE-----AWENENSEYAQQYKTEDLKWDN-LK 249

Query: 210 KLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPF-------LTGCISLWF 262
            L  +++ N      +P+ +  + E+ +++++ N                       +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 263 LDLSDNNFYGQFFSKDL-NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH 321
           + +  NN         L  + ++  L    N+  GK+     +  KL  L++++N ++  
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEI 368

Query: 322 IPHWMGNFSNLEILLMSNNCLEGNIP--VQLLNHRTLKLLSVSENYLSGSMTSSF----- 374
             ++ G    +E L  ++N L+  IP      +   +  +  S N +      +F     
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 375 ---NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG-------QIPDQICQL 424
                 ++  + +  N +S    ++    S L +++L GN L            +     
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 425 RRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDL 484
             L  +DL  N+            L   +  +DL     S FP                 
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLP-YLVGIDLSYNSFSKFPT---------------- 530

Query: 485 EVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR 544
           +                                     D   N      P  I     + 
Sbjct: 531 QPLN---------------------SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 545 GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602
            L +  N +   +         I  LD+ +N       + +        + + Y+   
Sbjct: 570 QLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  177 bits (450), Expect = 2e-47
 Identities = 70/492 (14%), Positives = 156/492 (31%), Gaps = 89/492 (18%)

Query: 137 LKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPN----TKHDFLHHLDAS 192
           +  L L      G  P   +   T+LEVL L ++    N RL      + +         
Sbjct: 83  VTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 193 SNNFIGTLPQDMG-TILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFST 251
             ++  T            L+   I+++  + +I  S     +   +    NN +    +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF--VS 199

Query: 252 PFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQL 311
             +     L    + ++ F  +   +            E  +     +    N   L  +
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 312 DISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGS-M 370
           ++ +      +P ++     ++++ ++ N                + +S  +       +
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACN----------------RGISGEQLKDDWQAL 298

Query: 371 TSSFNLSSLKHLYVQKNAL-SGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM 429
             +     ++ +Y+  N L + P+   L +  KL  L+   N LEG++P       +L  
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLAS 357

Query: 430 MDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKR 489
           ++L++N+      +      Q  +EN+     +L   P +                    
Sbjct: 358 LNLAYNQITEIPANFCGFTEQ--VENLSFAHNKLKYIPNIFDA----------------- 398

Query: 490 DMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG-------NVPSEIGDLQK 542
                                    +++ M  +D S NE+          +         
Sbjct: 399 ------------------------KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG-------QIPAQLIELNFLSNFN 595
           +  +NLS+N +S      FS    + S++L  N L+                   L++ +
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 596 VSYNNLSGLIPD 607
           + +N L+ L  D
Sbjct: 495 LRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  171 bits (436), Expect = 1e-45
 Identities = 66/464 (14%), Positives = 141/464 (30%), Gaps = 58/464 (12%)

Query: 15  LANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNF 74
           +  LT L+   +  S           +  +  + Q   +      +L  L  +++     
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 75  EGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTF-------QLKVLELANCSLNVV 127
               P + L    +++++ ++    +   + ++            +++++ +   +L   
Sbjct: 262 LTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 128 --PTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNT---K 182
              T L     L  L+   N L G  P+    +  KL  L L  N  T    +P      
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITE---IPANFCGF 375

Query: 183 HDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG-------NIPSSVGEMKEL 235
            + + +L  + N             +  +  +D S N            +  +  +   +
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 236 IILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF-------YGQFFSKDLNLTQMEFLY 288
             ++LS N  S+ F     +    L  ++L  N                  N   +  + 
Sbjct: 436 SSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494

Query: 289 LENNKFSGKIEE-GLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIP 347
           L  NK +   ++        L  +D+S+N  S   P    N S L+   + N        
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ------- 546

Query: 348 VQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTL 406
                           N              SL  L +  N +   + + +     +  L
Sbjct: 547 -----------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PNISVL 592

Query: 407 DLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQ 450
           D++ N         +C     GM  L +++    I  C    ++
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDK-TQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  160 bits (407), Expect = 7e-42
 Identities = 50/433 (11%), Positives = 135/433 (31%), Gaps = 64/433 (14%)

Query: 208 LKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPF---LTGCISLWFLD 264
             ++  L +      G +P ++G++ EL +L L  +    +        ++  +S     
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 265 LSDNNFYGQFFSKD--LNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHI 322
               ++   F   D   + + +    + ++     I++    + K  Q+    N ++  +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V 198

Query: 323 PHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKH 381
              +   + L    M N+        +   +   +           +    + NL  L  
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ-----QYKTEDLKWDNLKDLTD 253

Query: 382 LYVQKNALSGPIPDMLFRSSKLMTLDLRGNNL--------EGQIPDQICQLRRLGMMDLS 433
           + V        +P  L    ++  +++  N          + Q         ++ ++ + 
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 434 HNRF-NGSIPSCFTNMLQWTIENVDLFGGELSIFPP-LGFC----YIGTYYN--STLDLE 485
           +N      + +    M +  +  ++    +L    P  G       +   YN  + +   
Sbjct: 314 YNNLKTFPVETSLQKMKK--LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 486 VCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPS-EIGDLQKIR 544
            C                               +  L  + N+L       +   +  + 
Sbjct: 372 FC--------------------------GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

Query: 545 GLNLSHNCLSG-------SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 597
            ++ S+N +          +  +      + S++LSNN++S          + LS+ N+ 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 598 YNNLSGLIPDKGQ 610
            N L+ +  +  +
Sbjct: 466 GNMLTEIPKNSLK 478

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.5 bits (225), Expect = 4e-19
 Identities = 30/291 (10%), Positives = 73/291 (25%), Gaps = 58/291 (19%)

Query: 341 CLEGNIP-VQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGP----IP 394
            + G  P V L ++  +  LS+     SG +  +   L+ L+ L +  +          P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 395 DMLFRSSKLMTLDLRGNNLEGQIPDQI--CQLRRLGMMDLSHNRFNGSIPSCFTNMLQWT 452
             +  +           + +    D         L    ++ +    SI       L+  
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK-- 184

Query: 453 IENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYN 512
              +      ++                                             +  
Sbjct: 185 DTQIGQLSNNITFVSK----------------------------------------AVMR 204

Query: 513 GSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDL 572
            + L       +  +        E  +       N  +     +    + NL+ +  +++
Sbjct: 205 LTKLRQ---FYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 573 SNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNL 623
            N     ++P  L  L  +   NV+ N        K  +    ++     +
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 4/96 (4%)

Query: 523 DLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ-- 580
           +   +         +    ++ GL+L     SG +P +   L  +E L L ++       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 581 --IPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTF 614
              P  +              +      D      F
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 15/116 (12%)

Query: 14  GLANLTILQVLDLSG----------SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTS 63
               L  L  +DLS            +S+ LK        D   N+        IT   S
Sbjct: 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 64  LEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLEL 119
           L  L +  N+           N   + VL +   N  + +      P  +  +  L
Sbjct: 568 LTQLQIGSNDIRKV-NEKITPN---ISVLDIKD-NPNISIDLSYVCPYIEAGMYML 618

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  209 bits (533), Expect = 4e-59
 Identities = 109/583 (18%), Positives = 189/583 (32%), Gaps = 64/583 (10%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
              K LD+S N L    S +  S   L+ LDLS    +      +  + S L  L+L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTG- 85

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLN-VVPTFLLHQYDLKYLDLSLNNLVGDFPSWML 156
           N +  +    F     L+ L     +L  +    + H   LK L+++ N +         
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 157 QNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDI 216
            N T LE L L++N       +  T    LH +                      L LD+
Sbjct: 146 SNLTNLEHLDLSSNKIQS---IYCTDLRVLHQMPLL------------------NLSLDL 184

Query: 217 SNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFS 276
           S N      P +  E++ L  L L  N  S +     + G   L    L    F  +   
Sbjct: 185 SLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 277 KDL------NLTQMEFLYLE---NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMG 327
           +         L  +          + +   I +     T +    +    +         
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--S 301

Query: 328 NFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKN 387
                + L + N        ++L + + L   S           S  +L SL+ L + +N
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPSLEFLDLSRN 357

Query: 388 ALS--GPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP-SC 444
            LS  G      F ++ L  LDL  N +   +      L +L  +D  H+        S 
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 445 FTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVT 504
           F ++    +  +D+      +     F  + +     L +          P         
Sbjct: 417 FLSL--RNLIYLDISHTHTRVAFNGIFNGLSSL--EVLKMAGNSFQENFLP--------- 463

Query: 505 KNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNL 564
                     NL +   LDLS  +L    P+    L  ++ LN+SHN         +  L
Sbjct: 464 ---DIFTELRNLTF---LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 565 QMIESLDLSNNRLSGQIPAQLIEL-NFLSNFNVSYNNLSGLIP 606
             ++ LD S N +      +L    + L+  N++ N+ +    
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  201 bits (513), Expect = 3e-56
 Identities = 94/456 (20%), Positives = 157/456 (34%), Gaps = 32/456 (7%)

Query: 15  LANLTILQVLDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
             +L+ L  L L+       +      LS L+ L      L+   +  I  L +L+ L++
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKV----LELANCSLN 125
           ++N  +        +N + LE L LSS N +  +   +     Q+ +    L+L+   +N
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 126 VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF 185
            +      +  L  L L  N    +     +Q    LEV  L    F     L       
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 186 L--------HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELII 237
           L             +  ++      D+   L  +    + +   E     S         
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQH 308

Query: 238 LHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNK--FS 295
           L L    F + F T  L     L F      N +      +++L  +EFL L  N   F 
Sbjct: 309 LELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFS-----EVDLPSLEFLDLSRNGLSFK 362

Query: 296 GKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH-R 354
           G   +    +T L  LD+S N +   +         LE L   ++ L+      +    R
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 355 TLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNN 412
            L  L +S  +   +    F  LSSL+ L +  N+        +F     L  LDL    
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 413 LEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM 448
           LE   P     L  L ++++SHN F       +  +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  198 bits (506), Expect = 2e-55
 Identities = 109/611 (17%), Positives = 200/611 (32%), Gaps = 79/611 (12%)

Query: 21  LQVLDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFE 75
            + LDLS        S        L+VLD+S  ++         SL+ L  L L+ N  +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 76  GPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVV--PTFLLH 133
               L + +  S L+ L+     N+  ++         LK L +A+  +     P +  +
Sbjct: 90  SL-ALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 134 QYDLKYLDLSLNNLVGDFPSWMLQNNTKLEV----LFLTNNSFTGNLRLPNTKHDFLHHL 189
             +L++LDLS N +   + +  L+   ++ +    L L+ N     ++    K   LH L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGN------IPSSVGEMKELIILH--LS 241
              +N     + +     L  L V  +    F           S++  +  L I    L+
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 242 KNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEG 301
             ++  D          ++    L       +           + L L N KF       
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL--EGNIPVQLLNHRTLKLL 359
           L +  +L           G       +  +LE L +S N L  +G          +LK L
Sbjct: 324 LKSLKRLT-----FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 360 SVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIP 418
            +S N +    ++   L  L+HL  Q + L       +F S   L+ LD+   +      
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 419 DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYY 478
                L  L ++ ++ N F  +                D+F    ++             
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLP-------------DIFTELRNL------------- 472

Query: 479 NSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG 538
            + LDL  C+                 +     + S+L     L++S N           
Sbjct: 473 -TFLDLSQCQ-------------LEQLSPTAFNSLSSLQV---LNMSHNNFFSLDTFPYK 515

Query: 539 DLQKIRGLNLSHNCLSGSIPRSFSNL-QMIESLDLSNNRLSGQIPAQ--LIELNFLSNFN 595
            L  ++ L+ S N +  S  +   +    +  L+L+ N  +     Q  L  +       
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 596 VSYNNLSGLIP 606
           V    +    P
Sbjct: 576 VEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  189 bits (483), Expect = 4e-52
 Identities = 95/453 (20%), Positives = 158/453 (34%), Gaps = 35/453 (7%)

Query: 15  LANLTILQVLDLS------GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEY-- 66
           + +L  L+ L+++               L++L+ LD+S N++     + +  L  +    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 67  --LDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSL 124
             LDLS N      P +      +L  L L +  + L V          L+V  L     
Sbjct: 180 LSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 125 NVVPTFL---------LHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGN 175
                           L    ++   L+  +   D    +    T +    L + +    
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 176 LRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKEL 235
                       HL+  +  F G  P      LK L  L  ++N   G    S  ++  L
Sbjct: 298 KDFSYNFG--WQHLELVNCKF-GQFPTLK---LKSLKRLTFTSNK--GGNAFSEVDLPSL 349

Query: 236 IILHLSKNNFSEDFSTPF-LTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKF 294
             L LS+N  S          G  SL +LDLS N       S  L L Q+E L  +++  
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 295 SGKIEEGLL-NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLL-N 352
               E  +  +   L  LDISH              S+LE+L M+ N  + N    +   
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 353 HRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGN 411
            R L  L +S+  L     ++F +LSSL+ L +  N             + L  LD   N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 412 NLEGQIPDQICQLRR-LGMMDLSHNRFNGSIPS 443
           ++      ++      L  ++L+ N F  +   
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  163 bits (415), Expect = 5e-43
 Identities = 88/430 (20%), Positives = 151/430 (35%), Gaps = 31/430 (7%)

Query: 12  LTGLANLTILQV-LDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSL-SSTITSLTSL 64
           L  L  + +L + LDLS            K +  L  L + +N  S ++  + I  L  L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 65  EYLDLSYNNFEGPCPLSSLANHS-------KLEVLLLSSTNNMLLVKTENFLPTFQLKVL 117
           E   L    F     L      +        +E   L+  +  L    + F     +   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 118 ELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLR 177
            L + ++  V  F  + +  ++L+L      G FP+  L++  +L        +    + 
Sbjct: 288 SLVSVTIERVKDFS-YNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVD 345

Query: 178 LPNTKHDFLHHLDASSN--NFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKEL 235
           LP+     L  LD S N  +F G   Q        L  LD+S N     + S+   +++L
Sbjct: 346 LPS-----LEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVIT-MSSNFLGLEQL 398

Query: 236 IILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFS 295
             L    +N  +           +L +LD+S  +    F      L+ +E L +  N F 
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 296 GKIEEGLL-NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHR 354
                 +      L  LD+S   L    P    + S+L++L MS+N              
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 355 TLKLLSVSENYLSGSMTSSF--NLSSLKHLYVQKNALSGPIPDMLFRS--SKLMTLDLRG 410
           +L++L  S N++  S         SSL  L + +N  +       F         L +  
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578

Query: 411 NNLEGQIPDQ 420
             +E   P  
Sbjct: 579 ERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  155 bits (394), Expect = 3e-40
 Identities = 76/441 (17%), Positives = 140/441 (31%), Gaps = 50/441 (11%)

Query: 186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNF 245
             +LD S N           +   +L VLD+S    +     +   +  L  L L+ N  
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 246 SEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKF-SGKIEEGLLN 304
               +    +G  SL  L   + N          +L  ++ L + +N   S K+ E   N
Sbjct: 89  QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 305 STKLYQLDISHNFLSGHIPHWMGNFSNLEILL----MSNNCLEGNIPVQLLNHRTLKLLS 360
            T L  LD+S N +       +     + +L     +S N +   I         L  L+
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLT 206

Query: 361 VSENYLSGSMTSSF--NLSSLKHLYVQKNALSG------PIPDMLFRSSKLMTLDLRGNN 412
           +  N+ S ++  +    L+ L+   +                  L     L   + R   
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 413 LE---GQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPL 469
           L+     I D    L  +    L            +    Q    +++L   +   FP L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ----HLELVNCKFGQFPTL 322

Query: 470 GFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNEL 529
               +     ++                        N +   +  +L +   LDLS N L
Sbjct: 323 KLKSLKRLTFTSNKG--------------------GNAFSEVDLPSLEF---LDLSRNGL 359

Query: 530 T--GNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLI- 586
           +  G           ++ L+LS N +   +  +F  L+ +E LD  ++ L       +  
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 587 ELNFLSNFNVSYNNLSGLIPD 607
            L  L   ++S+ +       
Sbjct: 419 SLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  154 bits (391), Expect = 7e-40
 Identities = 80/398 (20%), Positives = 135/398 (33%), Gaps = 32/398 (8%)

Query: 4   SLTNLYIFLTGLANLTILQVLDLSGSSSNCLK-----YLSHLKVLDISHNQLS------G 52
           SL  +   + GLA L + +++     +   L+      L  L  L I   +L+       
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 53  SLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTF 112
            +      LT++    L     E    +   + +   + L L +            L   
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQFP----TLKLK 325

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVG-DFPSWMLQNNTKLEVLFLTNNS 171
            LK L   +       + +     L++LDLS N L      S      T L+ L L+ N 
Sbjct: 326 SLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 172 FTGN----LRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPS 227
                   L L       L HLD   +N        +   L+ L+ LDIS+ H       
Sbjct: 385 VITMSSNFLGLEQ-----LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 228 SVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFL 287
               +  L +L ++ N+F E+F     T   +L FLDLS         +   +L+ ++ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 288 YLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGN-FSNLEILLMSNNCLEGNI 346
            + +N F             L  LD S N +       + +  S+L  L ++ N      
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 347 PVQLLNH--RTLKLLSVSENYLSGSMTSSFNLSSLKHL 382
             Q      +  + L V    +  +  S      +  L
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (351), Expect = 9e-35
 Identities = 67/369 (18%), Positives = 127/369 (34%), Gaps = 26/369 (7%)

Query: 259 SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFL 318
           S   LDLS N           +  +++ L L   +     +    + + L  L ++ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 319 SGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF--NL 376
                      S+L+ L+     L       + + +TLK L+V+ N +       +  NL
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 377 SSLKHLYVQKNALSGPIPDMLFRSSKL----MTLDLRGNNLEGQIPDQICQLRRLGMMDL 432
           ++L+HL +  N +       L    ++    ++LDL  N +   I     +  RL  + L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTL 207

Query: 433 SHNRFNGSIPSCFTNMLQWT----------IENVDLFGGELSIFPPLGFCYIGTYYNSTL 482
            +N  + ++       L                 +L   + S    L    I  +  + L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 483 DLEVCK-RDMFTSPQQVKVEFVTKNRY-ELYNGSNLNYMVGLDLSCNELTGNVPSEIGDL 540
           D  +    D+F     V    +       + + S       L+L   +       ++  L
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 541 QKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS--GQIPAQLIELNFLSNFNVSY 598
           +      L+     G    S  +L  +E LDLS N LS  G           L   ++S+
Sbjct: 328 K-----RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 599 NNLSGLIPD 607
           N +  +  +
Sbjct: 383 NGVITMSSN 391

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  133 bits (336), Expect = 7e-33
 Identities = 64/335 (19%), Positives = 113/335 (33%), Gaps = 15/335 (4%)

Query: 2   SGSLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSL 61
              L ++      L N++   ++ ++        Y    + L++ + +     +  + SL
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 62  TSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKT-ENFLPTFQLKVLELA 120
             L +      N        S  +   LE L LS           ++   T  LK L+L+
Sbjct: 328 KRLTFTSNKGGN------AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 121 NCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPN 180
              +  + +  L    L++LD   +NL       +  +   L  L +++           
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 181 TKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHL 240
                L  L  + N+F      D+ T L+ L  LD+S    E   P++   +  L +L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 241 SKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG---QFFSKDLNLTQMEFLYLENNKFSGK 297
           S NNF     T       SL  LD S N+      Q        + + FL L  N F+  
Sbjct: 502 SHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH--FPSSLAFLNLTQNDFACT 558

Query: 298 IEEGLLNS--TKLYQLDISHNFLSGHIPHWMGNFS 330
            E            QL +    +    P       
Sbjct: 559 CEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  109 bits (274), Expect = 5e-25
 Identities = 51/322 (15%), Positives = 99/322 (30%), Gaps = 57/322 (17%)

Query: 305 STKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSEN 364
                 LD+S N L     +   +F  L++L +S   ++        +   L  L ++ N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 365 YLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG-QIPDQIC 422
            +      +F  LSSL+ L   +  L+      +     L  L++  N ++  ++P+   
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 423 QLRRLGMMDLSHNRFNGSIPSCFTNM--LQWTIENVDLFGGELSIFPPLGFCYIGTYYNS 480
            L  L  +DLS N+      +    +  +     ++DL    ++   P  F         
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--------- 197

Query: 481 TLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSE-IGD 539
                                              L+    L L  N  + NV    I  
Sbjct: 198 -------------------------------KEIRLHK---LTLRNNFDSLNVMKTCIQG 223

Query: 540 LQKIRGLNLSHNCLSGSIPR---SFSNLQMIESLDLSNNRLS------GQIPAQLIELNF 590
           L  +    L                S L+ + +L +   RL+        I      L  
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 591 LSNFNVSYNNLSGLIPDKGQYS 612
           +S+F++    +  +      + 
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFG 305

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  204 bits (520), Expect = 3e-57
 Identities = 106/581 (18%), Positives = 206/581 (35%), Gaps = 65/581 (11%)

Query: 37  LSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
            +  + L+ S N L    ++T + L +L +LDL+           +  +  +L+ L+L++
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTA 90

Query: 97  TNNMLLVKTENFLPTFQLKVLELANCSLNVV-PTFLLHQYDLKYLDLSLNNLVGDFPSWM 155
            N ++ +          LK L      ++ +    L +Q  L+ L L  N++        
Sbjct: 91  -NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPK 148

Query: 156 LQNNTKLEVLFLTNNSFTGNLR-----LPNTKHDFLHHLDASSNNFIGTLPQDMGTILKK 210
                KL+VL   NN+     +     L    +  L+     + N I  +          
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL----NGNDIAGIEPGAFD-SAV 203

Query: 211 LLVLDISNNHFEGNIPSSVG--EMKELIILHLSKNNFSEDFSTPFLTGC-ISLWFLDLSD 267
              L+         I   +    ++ L +      +  +     F   C +S+  ++L  
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 268 NNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMG 327
           + F+    +     + ++ L L     S ++  GL+  + L +L +S N           
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 328 NFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSMTSSF---NLSSLKHLY 383
           NF +L  L +  N     +    L +   L+ L +S + +  S   +    NLS L+ L 
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 384 VQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPD-QICQLRRLGMMDLSHNRFNGSIP 442
           +  N       +      +L  LDL    L+ +        L  L +++LSH+  + S  
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 443 SCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEF 502
             F  +    +++++L G                                          
Sbjct: 443 QLFDGLPA--LQHLNLQGNHFPKGNIQKT------------------------------- 469

Query: 503 VTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFS 562
                  L     L     L LS  +L+         L+ +  ++LSHN L+ S   + S
Sbjct: 470 -----NSLQTLGRLEI---LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 563 NLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG 603
           +L+ I  L+L++N +S  +P+ L  L+     N+  N L  
Sbjct: 522 HLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  189 bits (482), Expect = 5e-52
 Identities = 116/595 (19%), Positives = 209/595 (35%), Gaps = 71/595 (11%)

Query: 29  SSSNCLKYLSHL-KVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHS 87
           +SS+       + K  +  +  L+  +  T+    S E L+ S+N        ++ +   
Sbjct: 2   TSSDQKCIEKEVNKTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTI-QNTTFSRLI 57

Query: 88  KLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYD-LKYLDLSLNN 146
            L  L L+    +  +  + F    +L  L L    L  +    L     LK+L      
Sbjct: 58  NLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 147 LVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGT 206
           +        L N   LE L+L                          +N I ++    G 
Sbjct: 117 ISS-IDFIPLHNQKTLESLYL-------------------------GSNHISSIKLPKGF 150

Query: 207 ILKKLLVLDISNNHFEGNIPSSVGEMKEL--IILHLSKNNFSEDFSTPFLTGCISLWFLD 264
             +KL VLD  NN         +  +++   + L+L+ N+ +      F         L+
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLN 208

Query: 265 LSDNN-----FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLS 319
                     F G   S   +L    F  +++   S  + EGL   + +  +++  ++  
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-VESINLQKHYFF 267

Query: 320 GHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSS 378
               +    FS L+ L ++   L   +P  L+   TLK L +S N        S  N  S
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 379 LKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLE--GQIPDQICQLRRLGMMDLSHN 435
           L HL ++ N     +      +   L  LDL  +++E       Q+  L  L  ++LS+N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 436 RFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP 495
                    F    Q  +E +DL    L +       +   +    L+L           
Sbjct: 387 EPLSLKTEAFKECPQ--LELLDLAFTRLKVKDAQSP-FQNLHLLKVLNLSHSL------- 436

Query: 496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG---DLQKIRGLNLSHNC 552
                     +         L +   L+L  N        +      L ++  L LS   
Sbjct: 437 ------LDISSEQLFDGLPALQH---LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 553 LSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
           LS     +F++L+M+  +DLS+NRL+      L  L  +   N++ N++S ++P 
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  185 bits (472), Expect = 1e-50
 Identities = 102/498 (20%), Positives = 172/498 (34%), Gaps = 48/498 (9%)

Query: 15  LANLTILQVLDLSGSS-----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
            + L  L  LDL+         +  +    L  L ++ N L     + ++   +L++L  
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
                        L N   LE L L S N++  +K     PT +LKVL+  N +++ +  
Sbjct: 113 IQTGISSI-DFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 130 FL---LHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFL 186
                L Q     L+L+ N++ G  P        +      T N       L N+    L
Sbjct: 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL 230

Query: 187 HHLDAS-------------------------SNNFIGTLPQDMGTILKKLLVLDISNNHF 221
                                            ++   +  +       L  LD++  H 
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 222 EGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL-N 280
              +PS +  +  L  L LS N F         +   SL  L +  N    +  +  L N
Sbjct: 291 S-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 281 LTQMEFLYLENNK--FSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS 338
           L  +  L L ++    S      L N + L  L++S+N               LE+L ++
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 339 NNCLEGNIP-VQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPI--- 393
              L+         N   LK+L++S + L  S    F  L +L+HL +Q N         
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

Query: 394 PDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTI 453
            + L    +L  L L   +L          L+ +  +DLSHNR   S     +++     
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL---KG 525

Query: 454 ENVDLFGGELSIFPPLGF 471
             ++L    +SI  P   
Sbjct: 526 IYLNLASNHISIILPSLL 543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  184 bits (469), Expect = 3e-50
 Identities = 76/450 (16%), Positives = 139/450 (30%), Gaps = 20/450 (4%)

Query: 15  LANLTILQVLDLS-----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
           L+    L+ L              L     L+ L +  N +S            L+ LD 
Sbjct: 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP- 128
             N          +++  +   L L+   N +         +   + L        +V  
Sbjct: 161 QNNAIHYLSK-EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 129 --TFLLHQYDLKYLDLSLNNLVG-DFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF 185
                     L        +        +       +E + L  + F             
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279

Query: 186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNF 245
           L  LD ++ + +  LP  +   L  L  L +S N FE     S      L  L +  N  
Sbjct: 280 LQELDLTATH-LSELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 246 SEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL--NLTQMEFLYLENNKFSGKIEEGLL 303
             +  T  L    +L  LDLS ++            NL+ ++ L L  N+      E   
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 304 NSTKLYQLDISHNFLSGHIPH-WMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVS 362
              +L  LD++   L          N   L++L +S++ L+ +          L+ L++ 
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 363 ENYLSGSMTSSF----NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIP 418
            N+              L  L+ L +    LS            +  +DL  N L     
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 419 DQICQLRRLGMMDLSHNRFNGSIPSCFTNM 448
           + +  L+ +  ++L+ N  +  +PS    +
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPSLLPIL 546

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  160 bits (407), Expect = 5e-42
 Identities = 84/440 (19%), Positives = 150/440 (34%), Gaps = 42/440 (9%)

Query: 15  LANLTILQVLDLSG-----SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLE--YL 67
           L N   L+ L L                  LKVLD  +N +       ++SL       L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 68  DLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLV-KTENFLPTFQLKVLELANCSLNV 126
           +L+ N+  G  P     + +  + L    T N+L++ K         L +    +     
Sbjct: 185 NLNGNDIAGIEP--GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 127 VPTFL---LHQYDLKYLDLSLNNLVGDFPSW----------------------MLQNNTK 161
           +   +   L +  ++ ++L  +       +                        L   + 
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLST 302

Query: 162 LEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHF 221
           L+ L L+ N F    ++  +    L HL    N     L       L+ L  LD+S++  
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 222 E--GNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG-QFFSKD 278
           E        +  +  L  L+LS N       T     C  L  LDL+          S  
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 279 LNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNF---SNLEIL 335
            NL  ++ L L ++      E+       L  L++  N           +      LEIL
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 336 LMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPD 395
           ++S   L         + + +  + +S N L+ S   + +     +L +  N +S  +P 
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPS 541

Query: 396 MLFRSSKLMTLDLRGNNLEG 415
           +L   S+  T++LR N L+ 
Sbjct: 542 LLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 96.6 bits (241), Expect = 4e-21
 Identities = 58/272 (21%), Positives = 107/272 (39%), Gaps = 45/272 (16%)

Query: 8   LYIFLTGLANLTILQVLDLS-------GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITS 60
           L +    L NL  L+ LDLS          +  L+ LSHL+ L++S+N+     +     
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398

Query: 61  LTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELA 120
              LE LDL++   +     S   N   L+VL LS                         
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS------------------------- 433

Query: 121 NCSLNVVPTFLLHQ-YDLKYLDLSLNNLVG--DFPSWMLQNNTKLEVLFLTNNSFTGNLR 177
           +  L++    L      L++L+L  N+        +  LQ   +LE+L L+    +   +
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 178 LPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELII 237
              T    ++H+D S N    +  + +     K + L++++NH    +PS +  + +   
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSH--LKGIYLNLASNHISIILPSLLPILSQQRT 551

Query: 238 LHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN 269
           ++L +N             C +++FL+    N
Sbjct: 552 INLRQNPLDCT--------CSNIYFLEWYKEN 575

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 47/241 (19%)

Query: 376 LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHN 435
            +S + L    N L         R   L  LDL    +     D      RL  + L+ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 436 RFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP 495
                  +  +      ++++      +S    +                          
Sbjct: 92  PLIFMAETALSGPKA--LKHLFFIQTGISSIDFIPL------------------------ 125

Query: 496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSG 555
                              N   +  L L  N ++     +    +K++ L+  +N +  
Sbjct: 126 ------------------HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 556 SIPRSFSNLQMIE--SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYST 613
                 S+LQ     SL+L+ N ++G I     +     + N        +I    + ST
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 614 F 614
            
Sbjct: 227 I 227

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  205 bits (522), Expect = 3e-56
 Identities = 85/595 (14%), Positives = 183/595 (30%), Gaps = 101/595 (16%)

Query: 37  LSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
              +  L ++     G +   I  LT L+ L    ++      L      +    +    
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD--MSEER 379

Query: 97  TNNMLLVKTENFLPTFQ-LKVLELANCSLNVVPTFL----LHQYDLKYLDLS-LNNLVGD 150
            + + +   + FL   Q L + +L   ++N  P         +  LK   +  L N +  
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 151 FPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKK 210
                +Q  TKL++++  N+ FT +              ++                LK 
Sbjct: 440 ISKA-IQRLTKLQIIYFANSPFTYD-----NIAVDWEDANSDYAKQYENEELSWSN-LKD 492

Query: 211 LLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF 270
           L  +++ N      +P  + ++ EL  L+++ N              ++           
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED------- 545

Query: 271 YGQFFSKDLNLTQMEFLYLENNKFSG-KIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNF 329
                       +++  Y+  N          L    KL  LD  HN +  H+    G  
Sbjct: 546 ---------TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTN 594

Query: 330 SNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSG--SMTSSFNLSSLKHLYVQK 386
             L  L +  N +E  IP         ++ L  S N L    ++ ++ ++  +  +    
Sbjct: 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653

Query: 387 NALSGPIPDML-----FRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSI 441
           N +     ++      ++     T+ L  N ++    +       +  + LS+N    SI
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSI 712

Query: 442 PSCFTNMLQWTIEN------VDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP 495
           P           +N      +DL   +L+                  D            
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD--------------DFRAT-------- 750

Query: 496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSH----- 550
                               L Y+  +D+S N  +   P++  +  +++   + H     
Sbjct: 751 -------------------TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790

Query: 551 -NCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
            N +    P   +    +  L + +N +   +  +L     L   +++ N    +
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  173 bits (439), Expect = 2e-45
 Identities = 73/479 (15%), Positives = 134/479 (27%), Gaps = 76/479 (15%)

Query: 11  FLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSG------SLSSTITSLTSL 64
           FL     L +  +L  + + +  +K +     + +   Q+         +S  I  LT L
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKL 450

Query: 65  EYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSL 124
           + +  + + F          + +        +                       +N   
Sbjct: 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL------------------SWSNLK- 491

Query: 125 NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHD 184
                      DL  ++L     +   P + L +  +L+ L +  N      +L      
Sbjct: 492 -----------DLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 185 F---------LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKEL 235
                     +       NN            + KL +LD  +N        + G   +L
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKL 597

Query: 236 IILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG---QFFSKDLNLTQMEFLYLENN 292
             L L  N   E     F      +  L  S N        F +K  ++  M  +    N
Sbjct: 598 TDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK--SVYVMGSVDFSYN 654

Query: 293 KFSGKIEE-----GLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE---- 343
           K   +                  + +S+N +           S +  +++SNN +     
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 344 ---GNIPVQLLNHRTLKLLSVSENYLSG--SMTSSFNLSSLKHLYVQKNALSGPIPDMLF 398
                      N   L  + +  N L+       +  L  L ++ V  N  S   P    
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL 773

Query: 399 RSSKLMTLDLR------GNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQW 451
            SS+L    +R      GN +  Q P  I     L  + +  N     +    T  L  
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYI 831

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  171 bits (436), Expect = 6e-45
 Identities = 75/457 (16%), Positives = 140/457 (30%), Gaps = 58/457 (12%)

Query: 15  LANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNF 74
           +  LT LQ++  + S           +  +  + +   +   + ++L  L  ++L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 75  EGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ 134
               P   L +  +L+ L ++   N             +             +       
Sbjct: 504 MTQLP-DFLYDLPELQSLNIA--CN-------------RGISAAQLKADWTRLADDEDTG 547

Query: 135 YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFT-----GNLRLPNTKHDFLHHL 189
             ++   +  NNL     S  LQ   KL +L   +N        G           L  L
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVK-------LTDL 600

Query: 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPS--SVGEMKELIILHLSKNNFS- 246
               N  I  +P+D      ++  L  S+N  +  IP+  +   +  +  +  S N    
Sbjct: 601 KLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 247 ---EDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFS-------G 296
                  +      I+   + LS N             + +  + L NN  +        
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 297 KIEEGLLNSTKLYQLDISHNFLSGHIP--HWMGNFSNLEILLMSNNCLEGNIPVQLLNHR 354
             +    N+  L  +D+  N L+  +           L  + +S NC     P Q LN  
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS 776

Query: 355 TLKLLSVSE------NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLD 407
            LK   +        N +     +      SL  L +  N +   + + L    +L  LD
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLT--PQLYILD 833

Query: 408 LRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSC 444
           +  N         +C     GM  L +++    I  C
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDK-TQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  154 bits (390), Expect = 4e-39
 Identities = 66/501 (13%), Positives = 145/501 (28%), Gaps = 85/501 (16%)

Query: 125 NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHD 184
           +     L +   +  L L+     G  P   +   T+L+VL    +S T + RL   +  
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEEL 371

Query: 185 FLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNN 244
                +   +       +      ++L + D+  +    N    +  +K+   + L    
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQ 429

Query: 245 FSEDFST-----PFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIE 299
                +        +     L  +  +++ F     + D      E    +  K     E
Sbjct: 430 IGNLTNRITFISKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEE 484

Query: 300 EGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLL 359
               N   L  +++ +      +P ++ +   L+ L ++ N                   
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS--------------A 530

Query: 360 SVSENYLSGSMTSSFNLSSLKHLYVQKNALSG-PIPDMLFRSSKLMTLDLRGNNLEGQIP 418
           +  +   +           ++  Y+  N L   P    L +  KL  LD   N +     
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HL 588

Query: 419 DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYY 478
           +      +L  + L +N+             Q  +E +     +L   P +         
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ--VEGLGFSHNKLKYIPNIFNA------ 640

Query: 479 NSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG 538
                                               ++  M  +D S N++     +   
Sbjct: 641 -----------------------------------KSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 539 DLQKIRG-----LNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS-------GQIPAQLI 586
            +   +G     + LS+N +       F+    I ++ LSNN ++               
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 587 ELNFLSNFNVSYNNLSGLIPD 607
               L+  ++ +N L+ L  D
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDD 746

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (271), Expect = 2e-24
 Identities = 54/369 (14%), Positives = 119/369 (32%), Gaps = 48/369 (13%)

Query: 263 LDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHI 322
           LD  +  +Y    +  ++     F   E + +  +    L N+ ++  L ++     G +
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFN-KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339

Query: 323 PHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-------N 375
           P  +G  + L++L    +    +  +      T  +    ++ +       F       N
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 376 LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHN 435
           LS L    + +N    PI      S K   +    N +   I   I +L +L ++  +++
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS 458

Query: 436 RFNGSIPSCFTNMLQWTIENV-DLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTS 494
            F     +              +      S    L          + ++L  C       
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL----------TDVELYNCP------ 502

Query: 495 PQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG---------NVPSEIGDLQKIRG 545
                   +T+    LY+   L     L+++CN              +  +     KI+ 
Sbjct: 503 -------NMTQLPDFLYDLPELQS---LNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 546 LNLSHNCLSG-SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
             + +N L       S   +  +  LD  +N++   + A       L++  + YN +  +
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIEEI 610

Query: 605 IPDKGQYST 613
             D   ++ 
Sbjct: 611 PEDFCAFTD 619

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.5 bits (227), Expect = 3e-19
 Identities = 40/352 (11%), Positives = 94/352 (26%), Gaps = 41/352 (11%)

Query: 273 QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNL 332
            F   D  LT+   + ++  + +  I++          LD  +        +   +  N 
Sbjct: 243 SFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW 302

Query: 333 EILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSG 391
                  +       V L N+  +  LS++     G +  +   L+ LK L    ++ + 
Sbjct: 303 N-FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 392 PIPDMLFRSSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHN---RFNGSIPSCFTN 447
                          + R + +        +   +RL + DL  +   R     P    +
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 448 MLQWTIENVDLFGGELSIFPPLGFCYIGTYYN-STLDLEVCKRDMFTSPQQVKVEFVTKN 506
            +      +      ++         I        +                        
Sbjct: 422 RISLKDTQIGNLTNRITFISK----AIQRLTKLQIIYFANSP------------------ 459

Query: 507 RYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM 566
                  +        +    +   N      +L+ +  + L +      +P    +L  
Sbjct: 460 ---FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 567 IESLDLSNNRLSG---------QIPAQLIELNFLSNFNVSYNNLSGLIPDKG 609
           ++SL+++ NR            ++         +  F + YNNL        
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.6 bits (217), Expect = 6e-18
 Identities = 38/251 (15%), Positives = 82/251 (32%), Gaps = 36/251 (14%)

Query: 387 NALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFT 446
           +         L  + ++  L L G   +G++PD I QL  L ++    +    S      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 447 NMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKN 506
             L   +         +              Y+  L+L    +D      ++K       
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLD------YDQRLNLSDLLQDAINRNPEMK------- 415

Query: 507 RYELYNGSNLN-YMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSG---------- 555
              +   S ++     +    N +T  +   I  L K++ +  +++  +           
Sbjct: 416 --PIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472

Query: 556 ---------SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606
                    +   S+SNL+ +  ++L N     Q+P  L +L  L + N++ N       
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532

Query: 607 DKGQYSTFDES 617
            K  ++   + 
Sbjct: 533 LKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.0 bits (205), Expect = 1e-16
 Identities = 55/272 (20%), Positives = 99/272 (36%), Gaps = 38/272 (13%)

Query: 15  LANLTILQVLDLSG------SSSNCLKYLSHLKVLDISHNQLSG-----SLSSTITSLTS 63
            A    ++ L  S        +    K +  +  +D S+N++       S S       +
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674

Query: 64  LEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTN------NMLLVKTENFLPTFQLKVL 117
              + LSYN  +   P    A  S +  ++LS+        N L  K  N+  T+ L  +
Sbjct: 675 ASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 118 ELANCSLNVVPTFLLHQ--YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGN 175
           +L    L  +           L  +D+S N     FP+  L N+++L+   + +      
Sbjct: 734 DLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPL-NSSQLKAFGIRHQRDAEG 791

Query: 176 LRL----PNT--KHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV 229
            R+    P        L  L   SN+ I  + +    +  +L +LDI++N       +SV
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK---LTPQLYILDIADNPNISIDVTSV 847

Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCISLW 261
               E  +  L  +       T  + GC +L 
Sbjct: 848 CPYIEAGMYVLLYDK------TQDIRGCDALG 873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 10/121 (8%), Positives = 34/121 (28%), Gaps = 7/121 (5%)

Query: 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQI 581
            +   +        ++ +  ++ GL+L+     G +P +   L  ++ L    +  +   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 582 PA-------QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSC 634
                      +         + Y  +      +   S   + +   N  +     +   
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 635 N 635
           +
Sbjct: 424 S 424

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 15/116 (12%)

Query: 14  GLANLTILQVLDLSG----------SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTS 63
               L  L  +D+S            +S+ LK        D   N++     + IT+  S
Sbjct: 748 RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 64  LEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLEL 119
           L  L +  N+              +L +L ++  N  + +   +  P  +  +  L
Sbjct: 808 LIQLQIGSNDIRK-VDEKLT---PQLYILDIAD-NPNISIDVTSVCPYIEAGMYVL 858

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  191 bits (487), Expect = 1e-52
 Identities = 109/582 (18%), Positives = 195/582 (33%), Gaps = 72/582 (12%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
           S  K +D+S N L    S + ++ + L++LDLS    E      +      L  L+L+  
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTG- 89

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDFPSWML 156
           N +      +F     L+ L      L  + +F + Q   LK L+++ N +         
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 157 QNNTKLEVLFLTNNSFTG----NLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLL 212
            N T L  + L+ N        +L+           LD S  N I  +         KL 
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS-LNPIDFIQDQAFQ-GIKLH 207

Query: 213 VLDISNNHFEGNIPSSVGE-MKELIILHLSKNNFSEDFSTPFLT-------GCISLWFLD 264
            L +  N    NI  +  + +  L +  L    F ++ +              +++    
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 265 LSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPH 324
           L+  N +     K   L  +  + L          E +    K   L I    L      
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFPT- 324

Query: 325 WMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF---NLSSLKH 381
              +   L+ L ++ N    +I  + +   +L  L +S N LS S   S+     +SL+H
Sbjct: 325 --LDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 382 LYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGS 440
           L +  N     +        +L  LD + + L+          L +L  +D+S+      
Sbjct: 381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 441 IPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKV 500
               F  +    +  + + G                                        
Sbjct: 440 FDGIFLGLTS--LNTLKMAGNSFKDNTLSNV----------------------------- 468

Query: 501 EFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRS 560
                      N +NL +   LDLS  +L          L +++ LN+SHN L       
Sbjct: 469 ---------FANTTNLTF---LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

Query: 561 FSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602
           ++ L  + +LD S NR+             L+ FN++ N+++
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  178 bits (454), Expect = 3e-48
 Identities = 85/479 (17%), Positives = 144/479 (30%), Gaps = 55/479 (11%)

Query: 15  LANLTILQVLDLSGSS-----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
            +N + LQ LDLS              L HL  L ++ N +      + + LTSLE L  
Sbjct: 52  FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLS------------------------STNNMLLVKT 105
                        +     L+ L ++                        S N +  +  
Sbjct: 112 VETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

Query: 106 ENFLP----TFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTK 161
            +             L+++   ++ +         L  L L  N    +     LQN   
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230

Query: 162 LEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS-------SNNFIGTLPQDMGTILKKLLVL 214
           L V  L    F     L   +   +  L          +     +        L  +  +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF 274
            ++           V +  +   L + +    + F T  L     L  L L+ N   G  
Sbjct: 291 SLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQ-FPTLDLP---FLKSLTLTMNK--GSI 342

Query: 275 FSKDLNLTQMEFLYLENNKFSGKIEE--GLLNSTKLYQLDISHNFLSGHIPHWMGNFSNL 332
             K + L  + +L L  N  S         L +  L  LD+S N     +         L
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL 401

Query: 333 EILLMSNNCLEGNIPVQLL-NHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALS 390
           + L   ++ L+         +   L  L +S           F  L+SL  L +  N+  
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 391 GPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM 448
                 +F + + L  LDL    LE         L RL ++++SHN       S +  +
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  162 bits (411), Expect = 2e-42
 Identities = 85/448 (18%), Positives = 138/448 (30%), Gaps = 37/448 (8%)

Query: 15  LANLTILQVLDLSG------SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLT----SL 64
           +  L  L+ L+++               L++L  +D+S+N +     + +  L       
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 65  EYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSL 124
             LD+S N  +      +     KL  L L    N   +          L V  L     
Sbjct: 184 LSLDMSLNPIDF-IQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 125 NVVPTF---------LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGN 175
                           L    +    L+  N   D           +  + L   S    
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKYL 300

Query: 176 LRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKEL 235
             +P   H     L             D    L  L  L ++ N   G+I      +  L
Sbjct: 301 EDVPK--HFKWQSLSIIRCQLKQFPTLD----LPFLKSLTLTMNK--GSISFKKVALPSL 352

Query: 236 IILHLSKNNFSEDFSTPF-LTGCISLWFLDLSDNNFYGQFFSKDL-NLTQMEFLYLENNK 293
             L LS+N  S      +   G  SL  LDLS N       S +   L +++ L  +++ 
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHST 410

Query: 294 FSGKIEEGLL-NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN 352
                E     +  KL  LDIS+              ++L  L M+ N  + N    +  
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 353 H-RTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRG 410
           +   L  L +S+  L       F  L  L+ L +  N L         +   L TLD   
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 411 NNLEGQIPDQICQLRRLGMMDLSHNRFN 438
           N +E          + L   +L++N   
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (355), Expect = 4e-35
 Identities = 65/345 (18%), Positives = 112/345 (32%), Gaps = 28/345 (8%)

Query: 11  FLTGLANLTILQVLDLSGSSSNCLKYLS----------HLKVLDISHNQLSGSLSSTITS 60
            L  LA L + +++         L+              +    +++             
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283

Query: 61  LTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELA 120
           L ++  + L+  + +    L  +  H K + L +      L       LP   LK L L 
Sbjct: 284 LANVSAMSLAGVSIKY---LEDVPKHFKWQSLSII--RCQLKQFPTLDLP--FLKSLTLT 336

Query: 121 NCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFP-SWMLQNNTKLEVLFLTNNSFTGN---- 175
               ++    +     L YLDLS N L      S+       L  L L+ N         
Sbjct: 337 MNKGSISFKKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395

Query: 176 LRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKEL 235
           + L       L HLD   +             L+KLL LDIS  + + +       +  L
Sbjct: 396 MGLEE-----LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450

Query: 236 IILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFS 295
             L ++ N+F ++  +       +L FLDLS        +     L +++ L + +N   
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 296 GKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNN 340
                       L  LD S N +            +L    ++NN
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  126 bits (319), Expect = 1e-30
 Identities = 71/365 (19%), Positives = 128/365 (35%), Gaps = 25/365 (6%)

Query: 259 SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFL 318
           S   +DLS N           N +++++L L   +     ++       L  L ++ N +
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 319 SGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF--NL 376
               P      ++LE L+     L       +    TLK L+V+ N++      ++  NL
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 377 SSLKHLYVQKNALSGPIPDML----FRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDL 432
           ++L H+ +  N +     + L          ++LD+  N ++  I DQ  Q  +L  + L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTL 211

Query: 433 SHNRFNGSIPSCFTNMLQWT----------IENVDLFGGELSIFPPLGFCYIGTYYNSTL 482
             N  + +I       L              +  +L   E SI   L    I  +  +  
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 483 DLEVCKRDMFTSPQQVKVEFVTKNRYE-LYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQ 541
           +        F     V    +     + L +         L +   +L         DL 
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL---DLP 328

Query: 542 KIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLS--NFNVSYN 599
            ++ L L+ N   GSI      L  +  LDLS N LS        +L   S  + ++S+N
Sbjct: 329 FLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 600 NLSGL 604
               +
Sbjct: 387 GAIIM 391

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.7 bits (236), Expect = 2e-20
 Identities = 53/339 (15%), Positives = 104/339 (30%), Gaps = 59/339 (17%)

Query: 287 LYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI 346
               + K S K+ + + +STK   +D+S N L     +   NFS L+ L +S   +E   
Sbjct: 16  YQCMDQKLS-KVPDDIPSSTK--NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 347 PVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMT 405
                    L  L ++ N +      SF  L+SL++L   +  L+      + +   L  
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 406 LDLRGNNLEG-QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM--LQWTIENVDLFGGE 462
           L++  N +   ++P     L  L  +DLS+N       +    +        ++D+    
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 463 LSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGL 522
           +       F                                         G  L+    L
Sbjct: 193 IDFIQDQAF----------------------------------------QGIKLHE---L 209

Query: 523 DLSCNELTGNVPSE-IGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESL--------DLS 573
            L  N  + N+    + +L  +    L                 ++E L         L+
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 574 NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYS 612
                     +   L  +S  +++  ++  L      + 
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  174 bits (444), Expect = 2e-49
 Identities = 70/311 (22%), Positives = 132/311 (42%), Gaps = 35/311 (11%)

Query: 140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNT--KHDFLHHLD-ASSNNF 196
            D      +G           ++  L L+  +      +P++     +L+ L     NN 
Sbjct: 31  TDCCNRTWLGVLCDT-DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 197 IGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTG 256
           +G +P  +   L +L  L I++ +  G IP  + ++K L+ L  S N  S         G
Sbjct: 90  VGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---------G 139

Query: 257 CISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQ-LDISH 315
            +                     +L  +  +  + N+ SG I +   + +KL+  + IS 
Sbjct: 140 TLPPSIS----------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 316 NFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFN 375
           N L+G IP    N  NL  + +S N LEG+  V   + +  + + +++N L+  +     
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

Query: 376 LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHN 435
             +L  L ++ N + G +P  L +   L +L++  NNL G+IP Q   L+R  +   ++N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

Query: 436 RF--NGSIPSC 444
           +      +P+C
Sbjct: 302 KCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  169 bits (430), Expect = 2e-47
 Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 4/238 (1%)

Query: 214 LDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP-FLTGCISLWFLDLSD-NNFY 271
            D  N  + G +  +  +   +  L LS  N  + +  P  L     L FL +   NN  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 272 GQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSN 331
           G        LTQ+ +LY+ +   SG I + L     L  LD S+N LSG +P  + +  N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 332 LEILLMSNNCLEGNIPVQLLNHRTL-KLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALS 390
           L  +    N + G IP    +   L   +++S N L+G +  +F   +L  + + +N L 
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 391 GPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM 448
           G    +         + L  N+L   +  ++   + L  +DL +NR  G++P   T +
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  165 bits (421), Expect = 3e-46
 Identities = 79/310 (25%), Positives = 117/310 (37%), Gaps = 40/310 (12%)

Query: 43  LDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS-SLANHSKLEVLLLSSTNNML 101
            D  +    G L  T T    +  LDLS  N   P P+  SLAN   L  L +   NN+ 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL- 89

Query: 102 LVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTK 161
                  +P        +A  +             L YL ++  N+ G  P + L     
Sbjct: 90  ----VGPIPP------AIAKLT------------QLHYLYITHTNVSGAIPDF-LSQIKT 126

Query: 162 LEVLFLTNNSFTGNL-----RLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDI 216
           L  L  + N+ +G L      LPN     L  +    N   G +P   G+  K    + I
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPN-----LVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 217 SNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFS 276
           S N   G IP +   +  L  + LS+N    D S        +   + L+ N+       
Sbjct: 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFD-LG 238

Query: 277 KDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEIL- 335
           K      +  L L NN+  G + +GL     L+ L++S N L G IP   GN    ++  
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSA 297

Query: 336 LMSNNCLEGN 345
             +N CL G+
Sbjct: 298 YANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  163 bits (414), Expect = 3e-45
 Identities = 82/348 (23%), Positives = 125/348 (35%), Gaps = 87/348 (25%)

Query: 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSG--HIPHWMGNFSNLEILLMSN-NCLEGNIP 347
           N  + G + +    + ++  LD+S   L     IP  + N   L  L +   N L G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 348 VQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLD 407
             +                         L+ L +LY+    +SG IPD L +   L+TLD
Sbjct: 95  PAI-----------------------AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 408 LRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS--I 465
              N L G +P  I  L  L  +    NR +G+IP  + +       ++ +    L+  I
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKI 190

Query: 466 FPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNR------YELYNGSNLNYM 519
            P      +     + +DL                    +N           +  N    
Sbjct: 191 PPTFANLNL-----AFVDLS-------------------RNMLEGDASVLFGSDKNTQK- 225

Query: 520 VGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG 579
             + L+ N L  ++                               + +  LDL NNR+ G
Sbjct: 226 --IHLAKNSLAFDLG-------------------------KVGLSKNLNGLDLRNNRIYG 258

Query: 580 QIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCG 627
            +P  L +L FL + NVS+NNL G IP  G    FD S+Y  N  LCG
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 96.4 bits (241), Expect = 5e-22
 Identities = 44/209 (21%), Positives = 74/209 (35%), Gaps = 52/209 (24%)

Query: 405 TLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGS--IPSCF---TNMLQWTIENVDLF 459
           T D       G + D   Q  R+  +DLS         IPS       +    I  ++  
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 460 GGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYM 519
            G +   PP                                         +   + L+Y 
Sbjct: 90  VGPI---PP----------------------------------------AIAKLTQLHY- 105

Query: 520 VGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG 579
             L ++   ++G +P  +  ++ +  L+ S+N LSG++P S S+L  +  +    NR+SG
Sbjct: 106 --LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 580 QIPAQLIELNFLSNF-NVSYNNLSGLIPD 607
            IP      + L     +S N L+G IP 
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  171 bits (434), Expect = 9e-45
 Identities = 124/686 (18%), Positives = 229/686 (33%), Gaps = 88/686 (12%)

Query: 37  LSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
           L+  + L +S N +    +S+   L  L+ L+L            +  N   L +L L S
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 97  TNNMLLVKTENFLPTFQLKVLELANCSLN---VVPTFLLHQYDLKYLDLSLNNLVGDFPS 153
            + +  +  + F   F L  L L  C L+   +   +  +   L  LDLS N +   +  
Sbjct: 83  -SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 154 WMLQNNTKLEVLFLTNNSFTG-------NLRLPNTKHDFLHHLDASSNNFIGTLPQDMGT 206
                   L+ +  ++N            L+        L      S   +         
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 207 ILKKLLVLDISNNHFEGNIPS------------SVGEMKELIILHLSKNNFSEDFSTPFL 254
               L +LD+S N +  +I              S+     ++      +N  +     F 
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 255 TGC-ISLWFLDLSDNNFYGQFFSKDL--NLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQ 310
                S+  LDLS         +  +   L  ++ L L  NK + KI +        L  
Sbjct: 262 GLARSSVRHLDLSHGFV--FSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQV 318

Query: 311 LDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM 370
           L++S+N L             +  + +  N +             L+ L + +N    ++
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN----AL 374

Query: 371 TSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG-QIPDQICQLRRLGM 429
           T+   + S+  +++  N L   +P +   ++    + L  N LE   I   + ++  L +
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVT-LPKINLTAN---LIHLSENRLENLDILYFLLRVPHLQI 430

Query: 430 MDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKR 489
           + L+ NRF+        +    ++E + L    L +      C                 
Sbjct: 431 LILNQNRFSSCSGDQTPSENP-SLEQLFLGENMLQLAWETELC----------------W 473

Query: 490 DMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLS 549
           D+F     ++V                     L L+ N L    P     L  +RGL+L+
Sbjct: 474 DVFEGLSHLQV---------------------LYLNHNYLNSLPPGVFSHLTALRGLSLN 512

Query: 550 HNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKG 609
            N L+            +E LD+S N+L    P        LS  ++++N          
Sbjct: 513 SNRLTVLSHNDL--PANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICEC---- 563

Query: 610 QYSTFDESSYRGNLYLCGPTINKSCNSAEETPA--IKSKGREDEDDFVIDMVSLYWSFGA 667
           + STF       N+ + GP  +  C   +      + S   E  D+  +     +  F  
Sbjct: 564 ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIV 623

Query: 668 SYVTVILGLFAILWINSFWRKRWFYF 693
             VT+ L L  IL +  F    +  +
Sbjct: 624 CTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  151 bits (383), Expect = 3e-38
 Identities = 95/493 (19%), Positives = 177/493 (35%), Gaps = 48/493 (9%)

Query: 15  LANLTILQVLDLSGS------SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
              L  LQ+L+L              + L +L++LD+  +++          L  L  L 
Sbjct: 44  FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103

Query: 69  LSYNNFEGPC-PLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVV 127
           L +              N   L  L LS      L    +F     LK ++ ++  + +V
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

Query: 128 PTFL---LHQYDLKYLDLSLNNLVGDFPSWMLQ-----NNTKLEVLFLTNNSFTGNL--- 176
                  L    L +  L+ N+L         +      N  LE+L ++ N +T ++   
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223

Query: 177 ------RLPNTKHDFLHHLDAS--SNNFIGTLPQDMGTILKK--LLVLDISNNHFEGNIP 226
                 +         HH+  +    + I    Q+    L +  +  LD+S+        
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283

Query: 227 SSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEF 286
                +K+L +L+L+ N  ++  +     G  +L  L+LS N     + S    L ++ +
Sbjct: 284 RVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342

Query: 287 LYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI 346
           + L+ N  +   ++      KL  LD+  N L+      +    ++  + +S N L   +
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TL 396

Query: 347 PVQLLNHRTLKLLSVSENYLSGSMTSSF--NLSSLKHLYVQKNALSGPIPDMLFRS-SKL 403
           P   L    + L   SEN L       F   +  L+ L + +N  S    D        L
Sbjct: 397 PKINLTANLIHL---SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453

Query: 404 MTLDLRGNNLEGQIPDQIC-----QLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL 458
             L L  N L+     ++C      L  L ++ L+HN  N   P  F+++    +  + L
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA--LRGLSL 511

Query: 459 FGGELSIFPPLGF 471
               L++      
Sbjct: 512 NSNRLTVLSHNDL 524

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  140 bits (354), Expect = 1e-34
 Identities = 86/463 (18%), Positives = 157/463 (33%), Gaps = 39/463 (8%)

Query: 4   SLTNLYIFLTGLANLTILQVLDLSG------SSSNCLKYLSHLKVLDISHNQLSGSLSST 57
            L++  +      NL  L  LDLS               L+ LK +D S NQ+       
Sbjct: 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

Query: 58  ITSLT--SLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLK 115
           +  L   +L +  L+ N+      +      +    ++L       L  + N        
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI-----LDVSGNGWTVDITG 222

Query: 116 VLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQN--NTKLEVLFLTNNSFT 173
               A          L H   +       +N+  D           + +  L L++    
Sbjct: 223 NFSNAISKSQAFSLILAHH--IMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 174 GNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMK 233
                       L  L+ + N  I  +  +    L  L VL++S N       S+   + 
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 234 ELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNK 293
           ++  + L KN+ +             L  LDL DN       +    +  +  ++L  NK
Sbjct: 339 KVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNA-----LTTIHFIPSIPDIFLSGNK 392

Query: 294 FSGKIEEGLLNSTKLYQLDISHNFLSG-HIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN 352
               + +  L +     + +S N L    I +++    +L+IL+++ N        Q  +
Sbjct: 393 LV-TLPKINLTAN---LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 353 HRT-LKLLSVSENYLSGSMTSSF------NLSSLKHLYVQKNALSGPIPDMLFRSSKLMT 405
               L+ L + EN L  +  +         LS L+ LY+  N L+   P +    + L  
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508

Query: 406 LDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM 448
           L L  N L   +         L ++D+S N+     P  F ++
Sbjct: 509 LSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVFVSL 549

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (286), Expect = 2e-26
 Identities = 81/432 (18%), Positives = 153/432 (35%), Gaps = 64/432 (14%)

Query: 4   SLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQ------------LS 51
            L    +    LA  ++   + +             L++LD+S N             +S
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229

Query: 52  GSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLAN--HSKLEVLLLSSTNNMLLVKTENFL 109
            S + ++     +      ++N + P   ++ A    S +  L LS    +  + +  F 
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDP-DQNTFAGLARSSVRHLDLSH-GFVFSLNSRVFE 287

Query: 110 PTFQLKVLELANCSLNVVP-TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLT 168
               LKVL LA   +N +         +L+ L+LS  NL+G+  S       K+  + L 
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS-YNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 169 NNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSS 228
            N                             +       L+KL  LD+ +N       ++
Sbjct: 347 KNHIA-------------------------IIQDQTFKFLEKLQTLDLRDNAL-----TT 376

Query: 229 VGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG-QFFSKDLNLTQMEFL 287
           +  +  +  + LS N               +   + LS+N           L +  ++ L
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINL-----TANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 288 YLENNKFSGKIEEGLL-NSTKLYQLDISHNFLSGHI-----PHWMGNFSNLEILLMSNNC 341
            L  N+FS    +     +  L QL +  N L                S+L++L +++N 
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

Query: 342 LEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSS 401
           L    P    +   L+ LS++ N L+  ++ +   ++L+ L + +N L  P PD+     
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVF---V 547

Query: 402 KLMTLDLRGNNL 413
            L  LD+  N  
Sbjct: 548 SLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  110 bits (276), Expect = 4e-25
 Identities = 71/427 (16%), Positives = 129/427 (30%), Gaps = 76/427 (17%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP 252
               +  +PQ     L     L +S N+      SS   +++L +L L            
Sbjct: 12  RFCNLTQVPQV----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 253 FLTGCISLWFLDLSDNNFYGQFFSKDL--NLTQMEFLYLENNKFSGKI--EEGLLNSTKL 308
                 +L  LDL  +     F   D    L  +  L L     S  +  +    N   L
Sbjct: 68  AFRNLPNLRILDLGSSKI--YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 309 YQLDISHNFLSGHIPHWM-GNFSNLEILLMSNNCLEGNIPVQL---LNHRTLKLLSVSEN 364
            +LD+S N +     H   G  ++L+ +  S+N +   +       L  +TL   S++ N
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAAN 184

Query: 365 YLS-------GSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI 417
            L        G   + F    L+ L V  N  +  I                 N +    
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS------------NAISKSQ 232

Query: 418 PDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTY 477
              +     +       +       + F  + + ++ ++DL  G +       F      
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF------ 286

Query: 478 YNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEI 537
                                                 L  +  L+L+ N++        
Sbjct: 287 ------------------------------------ETLKDLKVLNLAYNKINKIADEAF 310

Query: 538 GDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVS 597
             L  ++ LNLS+N L      +F  L  +  +DL  N ++         L  L   ++ 
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 598 YNNLSGL 604
            N L+ +
Sbjct: 371 DNALTTI 377

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.1 bits (195), Expect = 2e-15
 Identities = 50/219 (22%), Positives = 79/219 (36%), Gaps = 19/219 (8%)

Query: 15  LANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLT-SLEYLDLSYNN 73
              L  LQ LDL  ++   + ++  +  + +S N+L      T+  +  +   + LS N 
Sbjct: 358 FKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL-----VTLPKINLTANLIHLSENR 412

Query: 74  FEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLH 133
            E    L  L     L++L+L+          +       L+ L L    L +     L 
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472

Query: 134 QYD------LKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLH 187
                    L+ L L+ N L    P  +  + T L  L L +N  T      N     L 
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVL--SHNDLPANLE 529

Query: 188 HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIP 226
            LD S N  +     D   +   L VLDI++N F     
Sbjct: 530 ILDISRNQ-LLAPNPD---VFVSLSVLDITHNKFICECE 564

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  148 bits (375), Expect = 5e-38
 Identities = 86/467 (18%), Positives = 154/467 (32%), Gaps = 40/467 (8%)

Query: 15  LANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
             +L+ L  L L+G+     +      LS L+ L      L+   +  I  L +L+ L++
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKV----LELANCSLN 125
           ++N  +        +N + LE L LSS N +  +   +     Q+ +    L+L+   +N
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 126 VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF 185
            +      +  L  L L  N    +     +Q    LEV  L    F     L       
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 186 L--------HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSS-VGEMKELI 236
           L             +  ++      D+   L  +    + +   E     S     + L 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 237 ILHLSKNNFSEDF---------------STPFLTGCISLWFLDLSDNNFYGQFFSKD--L 279
           +++     F                   +        SL FLDLS N    +        
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWM-GNFSNLEILLMS 338
             T +++L L  N     +    L   +L  LD  H+ L       +  +  NL  L +S
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 339 NNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF--NLSSLKHLYVQKNALSGPIPDM 396
           +               +L++L ++ N    +        L +L  L + +  L    P  
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 397 LFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPS 443
               S L  L++  N L+        +L  L  + L  N ++ S P 
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  147 bits (374), Expect = 7e-38
 Identities = 103/586 (17%), Positives = 189/586 (32%), Gaps = 93/586 (15%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
              K LD+S N L    S +  S   L+ LDLS    +      +  + S L  L+L+  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTG- 85

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDFPSWML 156
           N +  +    F     L+ L     +L  +  F +     LK L+++ N +         
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 157 QNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS------SNNFIGTLPQDMGTILKK 210
            N T LE L L++N       +  T    LH +         S N +  +       ++ 
Sbjct: 146 SNLTNLEHLDLSSNKIQ---SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR- 201

Query: 211 LLVLDISNNHFEGNIPSSV-GEMKELIILHLSKNNFS-----EDFSTPFLTGCISLWFLD 264
           L  L + NN    N+  +    +  L +  L    F      E F    L G  +L   +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 265 LSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPH 324
                                      + +   I +     T +    +    +   +  
Sbjct: 262 FRLAY---------------------LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD 299

Query: 325 WMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYV 384
           +       + L + N        ++L +   LK L+ + N    +  S  +L SL+ L +
Sbjct: 300 FSY-NFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGG-NAFSEVDLPSLEFLDL 354

Query: 385 QKNALS--GPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP 442
            +N LS  G      F ++ L  LDL  N +   +      L +L  +D  H+       
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 443 SCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEF 502
                 L+  +  +D+      +     F                               
Sbjct: 414 FSVFLSLR-NLIYLDISHTHTRVAFNGIF------------------------------- 441

Query: 503 VTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCLSGSIPRSF 561
                      + L+ +  L ++ N    N   +I  +L+ +  L+LS   L    P +F
Sbjct: 442 -----------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 562 SNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
           ++L  ++ L++++N+L          L  L    +  N      P 
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (349), Expect = 1e-34
 Identities = 88/458 (19%), Positives = 153/458 (33%), Gaps = 36/458 (7%)

Query: 15  LANLTILQVLDLSGSS-----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
             +   LQVLDLS            + LSHL  L ++ N +        + L+SL+ L  
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
              N         + +   L+ L ++          E F     L+ L+L++  +  +  
Sbjct: 108 VETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 130 FLLH-----QYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL------RL 178
             L            LDLSLN +         +   +L  L L NN  + N+       L
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 179 PNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNH---FEGNIPSSVGEMKEL 235
              +   L   +  +   +    +     L  L + +    +   +  +I      +  +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 236 IILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFS 295
               L            +  G   L  ++     F        L L  ++ L   +NK  
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNKGG 338

Query: 296 GKIEEGLLNSTKLYQLDISHNFLS--GHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH 353
               E  L    L  LD+S N LS  G         ++L+ L +S N +   +    L  
Sbjct: 339 NAFSEVDL--PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 354 RTLKLLSVSENYLSGSMTSSF--NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGN 411
             L+ L    + L      S   +L +L +L +           +    S L  L + GN
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 412 NLEGQIPDQI-CQLRRLGMMDLSHNRFNGSIPSCFTNM 448
           + +      I  +LR L  +DLS  +     P+ F ++
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (291), Expect = 3e-27
 Identities = 88/513 (17%), Positives = 166/513 (32%), Gaps = 54/513 (10%)

Query: 115 KVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTG 174
              +    +   +P  L      K LDLS N L     S+   +  +L+VL L+      
Sbjct: 10  ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ- 65

Query: 175 NLRLPNT---KHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGE 231
              + +        L  L  + N  I +L     + L  L  L     +        +G 
Sbjct: 66  --TIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 232 MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF---YGQFFSKDLNLTQMEF-L 287
           +K L  L+++ N         + +   +L  LDLS N     Y         +  +   L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 288 YLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPH-WMGNFSNLEILLMSNNCLEGNI 346
            L  N  +  I+ G     +L++L + +NF S ++    +   + LE+  +         
Sbjct: 183 DLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 347 PVQLLNHRT---LKLLSVSENYLS-------GSMTSSFNLSSLKHLYVQKNALSGPIPDM 396
            ++  +      L  L++ E  L+         +     L+++    +    +   + D 
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDF 300

Query: 397 LFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENV 456
            +       L+L           ++  L+RL     + N+   +        L++    +
Sbjct: 301 SYNFG-WQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGNAFSEVDLPSLEF----L 352

Query: 457 DLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNL 516
           DL    LS          GT     LDL        +S                     L
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS--------------NFLGLEQL 398

Query: 517 NYMVGLDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN 575
            +   LD   + L       +   L+ +  L++SH     +    F+ L  +E L ++ N
Sbjct: 399 EH---LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 576 RLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPD 607
                    +   L  L+  ++S   L  L P 
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 98.6 bits (246), Expect = 1e-21
 Identities = 62/329 (18%), Positives = 117/329 (35%), Gaps = 29/329 (8%)

Query: 4   SLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLS----------HLKVLDISHNQLSGS 53
           SL  +   + GLA L + +++     +   L+              ++   +++      
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 54  -LSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTF 112
            +      LT++    L     E    +   + +   + L L +            L   
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQF----PTLKLK 325

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNL-VGDFPSWMLQNNTKLEVLFLTNNS 171
            LK L   +       + +     L++LDLS N L      S      T L+ L L+ N 
Sbjct: 326 SLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 172 FTGNLRLPNT--KHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV 229
                 + +     + L HLD   +N        +   L+ L+ LDIS+ H         
Sbjct: 385 VI---TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL--NLTQMEFL 287
             +  L +L ++ N+F E+F     T   +L FLDLS      +  S     +L+ ++ L
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVL 499

Query: 288 YLENNKFSGKIEEGLLNSTKLYQLDISHN 316
            + +N+     +      T L ++ +  N
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 19/95 (20%), Positives = 34/95 (35%)

Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS 573
            +   +  LDLS  E+          L  +  L L+ N +      +FS L  ++ L   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 574 NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK 608
              L+      +  L  L   NV++N +      +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (372), Expect = 1e-37
 Identities = 86/551 (15%), Positives = 174/551 (31%), Gaps = 76/551 (13%)

Query: 37  LSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
            + +K LD+S N+++      + +  +L+ L L  +         +  +   LE L LS 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSD 83

Query: 97  TNNMLLVKTENFLPTFQLKVLELANCSLNVVP--TFLLHQYDLKYLDLSLNNLVGDFPSW 154
            N++  + +  F P   LK L L       +   +   +  +L+ L +       +    
Sbjct: 84  -NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 155 MLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVL 214
                T L  L +   S              +HHL     +    L +    IL  +  L
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH-LSESAFLLEIFADILSSVRYL 201

Query: 215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWF-LDLSDNNFYGQ 273
           ++ + +      S +   +    +       S      F      L + L+LS+  F   
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF--- 258

Query: 274 FFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLE 333
                 + T         ++     E G + +  + +L I   +L   +         ++
Sbjct: 259 -----DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 334 ILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSMTSSF----NLSSLKHLYVQKNA 388
            + + N+ +   +P     H ++L+ L +SEN +      +        SL+ L + +N 
Sbjct: 314 RITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 389 LS--GPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFT 446
           L       ++L     L +LD+  N     +PD      ++  ++LS       + +C  
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP 430

Query: 447 NMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKN 506
             L+     +D+    L  F                                        
Sbjct: 431 QTLEV----LDVSNNNLDSFS--------------------------------------- 447

Query: 507 RYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM 566
                    L  +  L +S N+L      +      +  + +S N L       F  L  
Sbjct: 448 -------LFLPRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 567 IESLDLSNNRL 577
           ++ + L  N  
Sbjct: 499 LQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (361), Expect = 3e-36
 Identities = 93/476 (19%), Positives = 161/476 (33%), Gaps = 63/476 (13%)

Query: 15  LANLTILQVLDLSGSS-----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
           L     LQVL L  S       +    L  L+ LD+S N LS   SS    L+SL+YL+L
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
             N ++     S   N + L+ L + +      ++  +F     L  LE+   SL    +
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165

Query: 130 FLLHQ-YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH 188
             L    D+ +L L L+              + +  L L + +       P    +    
Sbjct: 166 QSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 189 LDASSNNFIGTLPQDMGTILK--------------------------------------- 209
           +   +        +    +LK                                       
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 210 --KLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD 267
              +  L I   +   ++ +    ++++  + +  +         F     SL FLDLS+
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSE 343

Query: 268 NNFYGQFFSKDL---NLTQMEFLYLENNKFS--GKIEEGLLNSTKLYQLDISHNFLSGHI 322
           N    ++            ++ L L  N      K  E LL    L  LDIS N     +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402

Query: 323 PHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHL 382
           P        +  L +S+  +   +   +     L++L VS N L    + S  L  L+ L
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNNNLD---SFSLFLPRLQEL 456

Query: 383 YVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN 438
           Y+ +N L   +PD       L+ + +  N L+        +L  L  + L  N ++
Sbjct: 457 YISRNKLKT-LPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  110 bits (277), Expect = 1e-25
 Identities = 83/514 (16%), Positives = 163/514 (31%), Gaps = 95/514 (18%)

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
              V +  + S   +P+ L     +K LDLS N +        L+    L+VL L     
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTA--AMKSLDLSFNKIT-YIGHGDLRACANLQVLIL----- 57

Query: 173 TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM 232
                                ++ I T+  D    L  L  LD+S+NH      S  G +
Sbjct: 58  --------------------KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97

Query: 233 KELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL-NLTQMEFLYLEN 291
             L  L+L  N +     T       +L  L + +   + +    D   LT +  L ++ 
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 292 NKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGN------ 345
                   + L +   ++ L +  +  +  +  +    S++  L + +  L         
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 346 -----IPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNAL-------SGPI 393
                 P++ L  R   L   S N L   +     LS ++      N L       S  +
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277

Query: 394 PDMLF-RSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWT 452
            ++    +  +  L +    L   +      L ++  + + +++      S   ++    
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS-- 335

Query: 453 IENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYN 512
           +E +DL                    N  ++  +       +   ++             
Sbjct: 336 LEFLDL------------------SENLMVEEYLKNSACKGAWPSLQT------------ 365

Query: 513 GSNLNYMVGLDLSCNELT--GNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESL 570
                    L LS N L         +  L+ +  L++S N     +P S    + +  L
Sbjct: 366 ---------LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415

Query: 571 DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
           +LS+  +   +   +     L   +VS NNL   
Sbjct: 416 NLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSF 446

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.1 bits (216), Expect = 5e-18
 Identities = 56/274 (20%), Positives = 92/274 (33%), Gaps = 21/274 (7%)

Query: 4   SLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTS 63
            L+ +      L  L      +    S         ++ L I    L   LS+  + L  
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 64  LEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQ---LKVLELA 120
           ++ + +  +      P S   +   LE L LS  N M+    +N         L+ L L+
Sbjct: 312 VKRITVENSKVFLV-PCSFSQHLKSLEFLDLSE-NLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 121 NCSLNVVPT---FLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLR 177
              L  +      LL   +L  LD+S N       S   Q   K+  L L++        
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS--CQWPEKMRFLNLSSTGIR---V 424

Query: 178 LPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELII 237
           +       L  LD S+NN            L +L  L IS N  +  +P +      L++
Sbjct: 425 VKTCIPQTLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDASL-FPVLLV 477

Query: 238 LHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFY 271
           + +S+N               SL  + L  N + 
Sbjct: 478 MKISRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 34/190 (17%)

Query: 5   LTNLYIFLTG-LANLTILQVLDLSG-------SSSNCLKYLSHLKVLDISHNQLSGSLSS 56
           +   Y+  +        LQ L LS         +   L  L +L  LDIS N     +  
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD 404

Query: 57  TITSLTSLEYLDLSYNNFE--GPCPLSSL--------------ANHSKLEVLLLSSTNNM 100
           +      + +L+LS         C   +L                  +L+ L +S  N +
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR-NKL 463

Query: 101 LLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQY-DLKYLDLSLNNLVGD-----FPSW 154
             +   +  P   L V++++   L  VP  +  +   L+ + L  N          + S 
Sbjct: 464 KTLPDASLFP--VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 521

Query: 155 MLQNNTKLEV 164
            L  N++ E 
Sbjct: 522 WLNKNSQKEQ 531

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 23/87 (26%), Positives = 39/87 (44%)

Query: 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQI 581
           LDLS N++T     ++     ++ L L  + ++     +F +L  +E LDLS+N LS   
Sbjct: 31  LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90

Query: 582 PAQLIELNFLSNFNVSYNNLSGLIPDK 608
            +    L+ L   N+  N    L    
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQTLGVTS 117

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 35/237 (14%), Positives = 72/237 (30%), Gaps = 49/237 (20%)

Query: 373 SFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDL 432
           S +  +      +  + +  IP  L  +  + +LDL  N +       +     L ++ L
Sbjct: 1   SLSCDASGVCDGRSRSFTS-IPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 433 SHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMF 492
             +R N      F ++    +E++DL    LS      F                     
Sbjct: 58  KSSRINTIEGDAFYSLGS--LEHLDLSDNHLSSLSSSWF--------------------- 94

Query: 493 TSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG-NVPSEIGDLQKIRGLNLSHN 551
                                  L+ +  L+L  N      V S   +L  ++ L + + 
Sbjct: 95  ---------------------GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 552 CLSGSIPR-SFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
                I R  F+ L  +  L++    L       L  +  + +  +  +  + L+  
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  138 bits (351), Expect = 2e-35
 Identities = 98/446 (21%), Positives = 171/446 (38%), Gaps = 34/446 (7%)

Query: 10  IFLTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
           +  T L  +T LQ   L   S + ++YL++L  ++ S+NQL+    + + +LT L  + +
Sbjct: 40  VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILM 97

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
           + N      PL++L N   L  L L +     +   +       L  LEL++ +++ +  
Sbjct: 98  NNNQIADITPLANLTN---LTGLTLFNNQ---ITDIDPLKNLTNLNRLELSSNTISDISA 151

Query: 130 FLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL 189
            L     L+ L    N +    P   L N T LE L +++N  +    L    +  L  L
Sbjct: 152 -LSGLTSLQQLSFG-NQVTDLKP---LANLTTLERLDISSNKVSDISVLAKLTN--LESL 204

Query: 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDF 249
            A++N      P  +   L  L  L ++ N  +     ++  +  L  L L+ N  S   
Sbjct: 205 IATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS--- 256

Query: 250 STPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLY 309
           +   L+G   L  L L  N       S    LT +  L L  N+        + N   L 
Sbjct: 257 NLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI--SPISNLKNLT 312

Query: 310 QLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGS 369
            L +  N +S   P  + + + L+ L   NN +     +  L +  +  LS   N +S  
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTN--INWLSAGHNQIS-D 367

Query: 370 MTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM 429
           +T   NL+ +  L +   A +    +     S   T+      L    P  I        
Sbjct: 368 LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTE 425

Query: 430 MDLSHNRFNGSIPSCFTNMLQWTIEN 455
            D++ N  + +    +T     TI  
Sbjct: 426 PDITWNLPSYTNEVSYTFSQPVTIGK 451

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  119 bits (300), Expect = 8e-29
 Identities = 82/403 (20%), Positives = 140/403 (34%), Gaps = 35/403 (8%)

Query: 40  LKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNN 99
           L    I+ +     + +  T+L       L   N       + L    ++  L       
Sbjct: 3   LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQADRLG- 57

Query: 100 MLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNN 159
             +   +       L  +  +N  L  +   L +   L  + ++ N +    P   L N 
Sbjct: 58  --IKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP---LANL 111

Query: 160 TKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNN 219
           T L  L L NN  T    L N  +  L+ L+ SSN             L  L  L   N 
Sbjct: 112 TNLTGLTLFNNQITDIDPLKNLTN--LNRLELSSNTISDISALSG---LTSLQQLSFGNQ 166

Query: 220 HFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL 279
             +      +  +  L  L +S N  S       L    +L  L  ++N       +   
Sbjct: 167 VTD---LKPLANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISD--ITPLG 218

Query: 280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSN 339
            LT ++ L L  N+        L + T L  LD+++N +S   P  +   + L  L +  
Sbjct: 219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274

Query: 340 NCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFR 399
           N +    P+  L    L  L ++EN L   ++   NL +L +L +  N +S   P  +  
Sbjct: 275 NQISNISPLAGLTA--LTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDISP--VSS 329

Query: 400 SSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP 442
            +KL  L    N +       +  L  +  +   HN+ +   P
Sbjct: 330 LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  117 bits (296), Expect = 3e-28
 Identities = 92/514 (17%), Positives = 171/514 (33%), Gaps = 80/514 (15%)

Query: 91  VLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGD 150
           +   + T +  + +        +     L   ++    +       +  L       +  
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQAD-RLGIKS 60

Query: 151 FPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKK 210
                ++    L  +  +NN  T    L N     L  +  ++N      P      L  
Sbjct: 61  IDG--VEYLNNLTQINFSNNQLTDITPLKNLTK--LVDILMNNNQIADITPLAN---LTN 113

Query: 211 LLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF 270
           L  L + NN         +  +  L  L LS N  S       L+G  SL  L   +   
Sbjct: 114 LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFGNQVT 168

Query: 271 YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFS 330
             +  +   NLT +E L + +NK S      L   T L  L  ++N +S   P  +G  +
Sbjct: 169 DLKPLA---NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILT 221

Query: 331 NLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALS 390
           NL+ L ++ N L+    +  L +  L  L ++ N +S ++     L+ L  L +  N +S
Sbjct: 222 NLDELSLNGNQLKDIGTLASLTN--LTDLDLANNQIS-NLAPLSGLTKLTELKLGANQIS 278

Query: 391 GPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQ 450
              P  L   + L  L+L  N LE   P  I  L+ L  + L  N  +   P      LQ
Sbjct: 279 NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQ 334

Query: 451 WTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYEL 510
                +  +  ++S    L                                         
Sbjct: 335 R----LFFYNNKVSDVSSLA---------------------------------------- 350

Query: 511 YNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESL 570
               NL  +  L    N+++    + + +L +I  L L+    + +     +N+ +  ++
Sbjct: 351 ----NLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

Query: 571 DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
                 L    PA + +    +  ++++N  S  
Sbjct: 405 KNVTGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (294), Expect = 6e-28
 Identities = 93/549 (16%), Positives = 165/549 (30%), Gaps = 107/549 (19%)

Query: 34  LKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLL 93
              L+      +    ++ +   + T L  +  L       +    +  L N        
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVEYLNN-------- 69

Query: 94  LSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPS 153
                               L  +  +N  L  +   L +   L  + ++ N +    P 
Sbjct: 70  --------------------LTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP- 107

Query: 154 WMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLV 213
             L N T L  L L NN  T    L N  +  L+ L+ SSN             L  L  
Sbjct: 108 --LANLTNLTGLTLFNNQITDIDPLKNLTN--LNRLELSSNTISDISALSG---LTSLQQ 160

Query: 214 LDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQ 273
           L   N   +      +  +  L  L +S N  S       L    +L  L  ++N     
Sbjct: 161 LSFGNQVTD---LKPLANLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISD- 213

Query: 274 FFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLE 333
             +    LT ++ L L  N+        L + T L  LD+++N +S   P  +   + L 
Sbjct: 214 -ITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268

Query: 334 ILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPI 393
            L +  N +    P+  L    L  L ++EN L   ++   NL +L +L +  N +S   
Sbjct: 269 ELKLGANQISNISPLAGLTA--LTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDIS 325

Query: 394 PDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTI 453
           P  +   +KL  L    N +       +  L  +  +   HN+ +   P    N+ + T 
Sbjct: 326 P--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT- 378

Query: 454 ENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNG 513
             + L     +  P                                              
Sbjct: 379 -QLGLNDQAWTNAPV------------------------------------------NYK 395

Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS 573
           +N++    +      L    P+ I D       +++ N L               ++   
Sbjct: 396 ANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWN-LPSYTNEVSYTFSQPVTIGKG 452

Query: 574 NNRLSGQIP 582
               SG + 
Sbjct: 453 TTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  112 bits (283), Expect = 1e-26
 Identities = 83/426 (19%), Positives = 157/426 (36%), Gaps = 56/426 (13%)

Query: 186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNF 245
                    N   T+ Q     L ++  L              V  +  L  ++ S N  
Sbjct: 26  KMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL 80

Query: 246 SEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS 305
           +       L     L  + +++N       +   NLT +  L L NN+ +    + L N 
Sbjct: 81  T---DITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNL 133

Query: 306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENY 365
           T L +L++S N +S      +   ++L+ L   N  +    P+  L    L+ L +S N 
Sbjct: 134 TNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ-VTDLKPLANLTT--LERLDISSNK 188

Query: 366 LSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR 425
           +S  ++    L++L+ L    N +S   P  L   + L  L L GN L+      +  L 
Sbjct: 189 VS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLT 243

Query: 426 RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLE 485
            L  +DL++N+ +   P   + + +  +  + L   ++S   PL                
Sbjct: 244 NLTDLDLANNQISNLAP--LSGLTK--LTELKLGANQISNISPLAGL------------- 286

Query: 486 VCKRDMFTSPQQVKVEFVTKNR-YELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR 544
                       +    + +N+  ++   SNL  +  L L  N ++    S +  L K++
Sbjct: 287 ----------TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQ 334

Query: 545 GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
            L   +N +S     S +NL  I  L   +N++S   P  L  L  ++   ++    +  
Sbjct: 335 RLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390

Query: 605 IPDKGQ 610
             +   
Sbjct: 391 PVNYKA 396

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  103 bits (259), Expect = 2e-23
 Identities = 76/421 (18%), Positives = 146/421 (34%), Gaps = 75/421 (17%)

Query: 186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNF 245
           L     + +  I  +  D  T L + +   +   +    +     ++ ++  L   +   
Sbjct: 3   LGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 246 SEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS 305
               S   +    +L  ++ S+N       +   NLT++  + + NN+ +      L N 
Sbjct: 59  K---SIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIAD--ITPLANL 111

Query: 306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENY 365
           T L  L + +N ++   P  + N +NL  L +S+N +     +  L    L+ LS     
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTS--LQQLSFGNQV 167

Query: 366 LSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR 425
                 +  NL++L+ L +  N +S      L + + L +L    N +    P  +  L 
Sbjct: 168 TDLKPLA--NLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILT 221

Query: 426 RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLE 485
            L  + L+ N+          ++    + ++DL   ++S   PL                
Sbjct: 222 NLDELSLNGNQLKD--IGTLASLTN--LTDLDLANNQISNLAPL---------------- 261

Query: 486 VCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRG 545
                                       S L  +  L L  N+++    S +  L  +  
Sbjct: 262 ----------------------------SGLTKLTELKLGANQISN--ISPLAGLTALTN 291

Query: 546 LNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLI 605
           L L+ N L    P   SNL+ +  L L  N +S   P  +  L  L       N +S + 
Sbjct: 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS 347

Query: 606 P 606
            
Sbjct: 348 S 348

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (318), Expect = 4e-31
 Identities = 71/418 (16%), Positives = 128/418 (30%), Gaps = 46/418 (11%)

Query: 17  NLTILQVLDLSGSS-----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSY 71
           N    ++  ++ SS     ++  +   ++K LD+S N LS   ++ +   T LE L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 72  NNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFL 131
           N          L + S L  L L+  NN +    +  L    ++ L  AN +++ V    
Sbjct: 68  NVLYE---TLDLESLSTLRTLDLN--NNYV----QELLVGPSIETLHAANNNISRVSCSR 118

Query: 132 LHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF--LHHL 189
                 K + L+ N +            ++++ L L  N     +           L HL
Sbjct: 119 GQG--KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHL 174

Query: 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDF 249
           +    NFI  +   +     KL  LD+S+N     +         +  + L  N      
Sbjct: 175 NL-QYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-- 228

Query: 250 STPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLY 309
               L    +L   DL  N F+     +D          +          +     T   
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCG-TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 310 QLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGS 369
                          +      L  L    +                 LLS   +     
Sbjct: 288 LGHYGAYCCEDLPAPF---ADRLIALKRKEH----------------ALLSGQGSETERL 328

Query: 370 MTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRL 427
                N +  + +   K      I  +  R    +TL+ +   L+ Q+ +       L
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (299), Expect = 1e-28
 Identities = 68/462 (14%), Positives = 161/462 (34%), Gaps = 43/462 (9%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP 252
           +++ +      +      +  LD+S N       + +    +L +L+LS N   E   T 
Sbjct: 18  TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE---TL 74

Query: 253 FLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLD 312
            L    +L  LDL++N        + L    +E L+  NN  S ++            + 
Sbjct: 75  DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRGQG--KKNIY 126

Query: 313 ISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG-NIPVQLLNHRTLKLLSVSENYLSGSMT 371
           +++N ++       G  S ++ L +  N ++  N      +  TL+ L++  N++   + 
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185

Query: 372 SSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMD 431
                + LK L +  N L+  +      ++ +  + LR N L   I   +   + L   D
Sbjct: 186 GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243

Query: 432 LSHNRFN-GSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRD 490
           L  N F+ G++   F+   +  ++ V     +         C +     +         +
Sbjct: 244 LRGNGFHCGTLRDFFSKNQR--VQTVAKQTVKKLTGQNEEECTV----PTLGHYGAYCCE 297

Query: 491 MFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSH 550
              +P   ++  + +  + L           L    +E    +  E  +  + R ++   
Sbjct: 298 DLPAPFADRLIALKRKEHAL-----------LSGQGSETE-RLECERENQARQREIDALK 345

Query: 551 NCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQ 610
                 I +     Q   +L+     L      + +     ++  +       +   + Q
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALD-----EQVSNGRRAHAELDGTLQQAVGQIELQ 400

Query: 611 YSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGREDED 652
           ++T ++S  +    +    + +      E  ++++    D D
Sbjct: 401 HATEEQSPLQLLRAI----VKRYEEMYVEQQSVQNNAIRDWD 438

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (297), Expect = 2e-28
 Identities = 56/407 (13%), Positives = 122/407 (29%), Gaps = 31/407 (7%)

Query: 53  SLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTF 112
           ++     +    +   ++ ++ +     S   +   ++ L LS  N +  +   +  P  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSG-NPLSQISAADLAPFT 58

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
           +L++L L++  L            L+ LDL+ N +        L     +E L   NN+ 
Sbjct: 59  KLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNI 111

Query: 173 TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG-NIPSSVGE 231
           +   R+  ++     ++  ++N  I  L         ++  LD+  N  +  N       
Sbjct: 112 S---RVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 232 MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL-NLTQMEFLYLE 290
              L  L+L  N                L  LDLS N     F   +  +   + ++ L 
Sbjct: 168 SDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLR 222

Query: 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLS-GHIPHWMGNFSNLEILLMSNNCLEGNIPVQ 349
           NNK    IE+ L  S  L   D+  N    G +  +      ++ +  +   ++      
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV--AKQTVKKLTGQN 279

Query: 350 LLNHRTLKLLSVSENYLSGSMTSSF------NLSSLKHLYVQKNALSGPIPDMLFRSSKL 403
                   L                             L  Q +     +       ++ 
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQ 338

Query: 404 MTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQ 450
             +D         I     + +    ++      +  + +      +
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (264), Expect = 3e-24
 Identities = 53/347 (15%), Positives = 108/347 (31%), Gaps = 57/347 (16%)

Query: 279 LNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS 338
            N  + +   + ++     +     ++  + +LD+S N LS      +  F+ LE+L +S
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 339 NNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLF 398
           +N L   + ++ L+   L+ L ++ NY+           S++ L+   N +S  +     
Sbjct: 67  SNVLYETLDLESLST--LRTLDLNNNYV----QELLVGPSIETLHAANNNISR-VSCSRG 119

Query: 399 RSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL 458
           +      + L  N +            R+  +DL  N  +    +        T+E+++L
Sbjct: 120 QG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNL 176

Query: 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNY 518
               +                                                  + L  
Sbjct: 177 QYNFIYDVKGQVVF-----------------------------------------AKLKT 195

Query: 519 MVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS 578
              LDLS N+L   +  E      +  ++L +N L   I ++    Q +E  DL  N   
Sbjct: 196 ---LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 579 GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYL 625
                            V+   +  L     +  T     + G    
Sbjct: 251 CGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.2 bits (229), Expect = 7e-20
 Identities = 61/407 (14%), Positives = 120/407 (29%), Gaps = 38/407 (9%)

Query: 12  LTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSY 71
              L +L+ L+ LDL+ +    L     ++ L  ++N +S     + +     + + L+ 
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLAN 129

Query: 72  NNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQ-LKVLELANCSLNVVPTF 130
           N              S+++ L L   N +  V       +   L+ L L    +  V   
Sbjct: 130 NKITML-RDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187

Query: 131 LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF--LHH 188
           ++    LK LDLS N L    P    Q+   +  + L NN       +         L H
Sbjct: 188 VVFAK-LKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLV---LIEKALRFSQNLEH 241

Query: 189 LDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSED 248
            D   N F     +D  +  +++  +       +     +  E     + H       ED
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEECTVPTLGHYG-AYCCED 298

Query: 249 FSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKL 308
              PF    I+                   L   +   L  + ++   ++E    N  + 
Sbjct: 299 LPAPFADRLIA-------------------LKRKEHALLSGQGSETE-RLECERENQARQ 338

Query: 309 YQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG 368
            ++D         I            L      L+  +      H  L            
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398

Query: 369 SMTSSFNLSSLKHLYVQKNALS-GPIPDMLFRSSKLMTLDLRGNNLE 414
              ++   S L+ L           +     +++ +   D+  +   
Sbjct: 399 LQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 15/70 (21%), Positives = 28/70 (40%)

Query: 537 IGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV 596
             +  + +   ++ + L  ++     +   ++ LDLS N LS    A L     L   N+
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 597 SYNNLSGLIP 606
           S N L   + 
Sbjct: 66  SSNVLYETLD 75

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (311), Expect = 6e-31
 Identities = 75/361 (20%), Positives = 135/361 (37%), Gaps = 34/361 (9%)

Query: 12  LTGLANLTILQVLDLSGSSSNCLKY---LSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
           +   A+L       L  +S   +     L  +  L ++  +++ S+   I  LT+LEYL+
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLN 72

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP 128
           L+ N      PLS+L    KL  L + +     +           L+ L L   +++ + 
Sbjct: 73  LNGNQITDISPLSNL---VKLTNLYIGTNK---ITDISALQNLTNLRELYLNEDNISDIS 126

Query: 129 TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH 188
             L +   +  L+L  N+ + D     L N T L  L +T +       + N     L+ 
Sbjct: 127 -PLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTD--LYS 181

Query: 189 LDASSNNF--IGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFS 246
           L  + N    I  L       L  L       N      P  V  M  L  L +  N  +
Sbjct: 182 LSLNYNQIEDISPLAS-----LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234

Query: 247 EDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNST 306
                  L     L +L++  N       +   +LT+++ L + +N+ S      L N +
Sbjct: 235 ---DLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLS 287

Query: 307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYL 366
           +L  L +++N L       +G  +NL  L +S N +    P+  L+   +     +   +
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSK--MDSADFANQVI 345

Query: 367 S 367
            
Sbjct: 346 K 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (306), Expect = 3e-30
 Identities = 76/420 (18%), Positives = 144/420 (34%), Gaps = 78/420 (18%)

Query: 18  LTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGP 77
              L  L    +       L+      +    ++     T   L S+  L ++       
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVASI 59

Query: 78  CPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDL 137
             +  L N                            L+ L L    +  +   L +   L
Sbjct: 60  QGIEYLTN----------------------------LEYLNLNGNQITDIS-PLSNLVKL 90

Query: 138 KYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFI 197
             L +  N +  D  +  LQN T L  L+L  ++ +               +   +N   
Sbjct: 91  TNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNIS--------------DISPLAN--- 130

Query: 198 GTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGC 257
                     L K+  L++  NH   ++ S +  M  L  L ++++          +   
Sbjct: 131 ----------LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK---DVTPIANL 176

Query: 258 ISLWFLDLSDNNFYG-QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHN 316
             L+ L L+ N        +   +LT + +     N+ +      + N T+L  L I +N
Sbjct: 177 TDLYSLSLNYNQIEDISPLA---SLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNN 231

Query: 317 FLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNL 376
            ++   P  + N S L  L +  N +     V+ L    LK+L+V  N +S  ++   NL
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTK--LKMLNVGSNQIS-DISVLNNL 286

Query: 377 SSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR 436
           S L  L++  N L     +++   + L TL L  N++    P  +  L ++   D ++  
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (281), Expect = 5e-27
 Identities = 67/411 (16%), Positives = 146/411 (35%), Gaps = 71/411 (17%)

Query: 192 SSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFST 251
           +    I  +  D    L + +   +           +  E++ +  L ++    +   S 
Sbjct: 7   TLPAPINQIFPDAD--LAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA---SI 59

Query: 252 PFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQL 311
             +    +L +L+L+ N       S   NL ++  LY+  NK +      L N T L +L
Sbjct: 60  QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLREL 115

Query: 312 DISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMT 371
            ++ + +S   P  + N + +  L +  N    ++   L N   L  L+V+E+ +     
Sbjct: 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP 172

Query: 372 SSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMD 431
            + NL+ L  L +  N +    P  L   + L       N +    P  +  + RL  + 
Sbjct: 173 IA-NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLK 227

Query: 432 LSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDM 491
           + +N+     P    N+ Q  +  +++   ++S    +                      
Sbjct: 228 IGNNKITDLSP--LANLSQ--LTWLEIGTNQISDINAVK--------------------- 262

Query: 492 FTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHN 551
                                  +L  +  L++  N+++    S + +L ++  L L++N
Sbjct: 263 -----------------------DLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN 297

Query: 552 CLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602
            L          L  + +L LS N ++   P  L  L+ + + + +   + 
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (273), Expect = 6e-26
 Identities = 72/393 (18%), Positives = 143/393 (36%), Gaps = 69/393 (17%)

Query: 214 LDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQ 273
           L           P    ++ E I   L K + ++           S+  L ++       
Sbjct: 5   LATLPAPINQIFP--DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKV--A 57

Query: 274 FFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLE 333
                  LT +E+L L  N+ +      L N  KL  L I  N ++      + N +NL 
Sbjct: 58  SIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLR 113

Query: 334 ILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPI 393
            L ++ + +    P+  L    +  L++  N+    ++   N++ L +L V ++ +    
Sbjct: 114 ELYLNEDNISDISPLANLTK--MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 394 PDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTI 453
           P  +   + L +L L  N +E   P  +  L  L       N+     P    NM +  +
Sbjct: 172 P--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR--L 223

Query: 454 ENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNG 513
            ++ +   +++   PL                                            
Sbjct: 224 NSLKIGNNKITDLSPLANL----------------------------------------- 242

Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS 573
           S L +   L++  N+++    + + DL K++ LN+  N +S       +NL  + SL L+
Sbjct: 243 SQLTW---LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLN 295

Query: 574 NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606
           NN+L  +    +  L  L+   +S N+++ + P
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (251), Expect = 4e-23
 Identities = 65/360 (18%), Positives = 127/360 (35%), Gaps = 34/360 (9%)

Query: 114 LKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN--- 170
              L      +N +        +     L   ++         +    +  L +      
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVA 57

Query: 171 SFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVG 230
           S  G   L N     L +L+ + N      P    + L KL  L I  N       S++ 
Sbjct: 58  SIQGIEYLTN-----LEYLNLNGNQITDISPL---SNLVKLTNLYIGTNKIT--DISALQ 107

Query: 231 EMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE 290
            +  L  L+L+++N S       L     ++ L+L  N+      S   N+T + +L + 
Sbjct: 108 NLTNLRELYLNEDNIS---DISPLANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVT 163

Query: 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL 350
            +K        + N T LY L +++N +    P  + + ++L       N +    PV  
Sbjct: 164 ESKVKDV--TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVAN 219

Query: 351 LNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRG 410
           +    L  L +  N ++  ++   NLS L  L +  N +S      +   +KL  L++  
Sbjct: 220 MTR--LNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGS 274

Query: 411 NNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLG 470
           N +       +  L +L  + L++N+           +    +  + L    ++   PL 
Sbjct: 275 NQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN--LTTLFLSQNHITDIRPLA 330

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.9 bits (211), Expect = 6e-18
 Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 27/254 (10%)

Query: 4   SLTNLYIF------LTGLANLTILQVLDLSG----SSSNCLKYLSHLKVLDISHNQLSGS 53
           +L  LY+       ++ LANLT +  L+L      S  + L  ++ L  L ++ +++   
Sbjct: 111 NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 54  LSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQ 113
             + I +LT L  L L+YN  E    +S LA+ + L            +          +
Sbjct: 171 --TPIANLTDLYSLSLNYNQIED---ISPLASLTSLHYFTAYVNQ---ITDITPVANMTR 222

Query: 114 LKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFT 173
           L  L++ N  +  +         L +L++   N + D  +  +++ TKL++L + +N  +
Sbjct: 223 LNSLKIGNNKITDLSPLANLS-QLTWLEIG-TNQISDINA--VKDLTKLKMLNVGSNQIS 278

Query: 174 GNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMK 233
               L N     L+ L  + NN +G    ++   L  L  L +S NH     P  +  + 
Sbjct: 279 DISVLNNLSQ--LNSLFLN-NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333

Query: 234 ELIILHLSKNNFSE 247
           ++     +     +
Sbjct: 334 KMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 9e-10
 Identities = 36/251 (14%), Positives = 87/251 (34%), Gaps = 58/251 (23%)

Query: 356 LKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG 415
              L+     ++  +    +L+      +QK +++  +         +  L + G  +  
Sbjct: 2   AATLATLPAPIN-QIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA- 57

Query: 416 QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIG 475
            I   I  L  L  ++L+ N+     P   +N+++  + N+ +   +++    L      
Sbjct: 58  SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVK--LTNLYIGTNKITDISAL------ 106

Query: 476 TYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPS 535
                                                  NL  +  L L+ + ++    S
Sbjct: 107 --------------------------------------QNLTNLRELYLNEDNISD--IS 126

Query: 536 EIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN 595
            + +L K+  LNL  N     +    SN+  +  L ++ +++    P  +  L  L + +
Sbjct: 127 PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183

Query: 596 VSYNNLSGLIP 606
           ++YN +  + P
Sbjct: 184 LNYNQIEDISP 194

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  125 bits (316), Expect = 7e-31
 Identities = 92/542 (16%), Positives = 170/542 (31%), Gaps = 98/542 (18%)

Query: 37  LSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
            + L+      + L+  +     ++ S      +++ +E   P  +     ++ V  L  
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRD 67

Query: 97  TNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWML 156
                           Q   LEL N  L+ +P    H   L+ L  S N+L  + P    
Sbjct: 68  ------------CLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPEL-P 110

Query: 157 QNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDI 216
           Q+   L V      + +    L       L +L   SNN +  LP+        L ++D+
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPL-------LEYLGV-SNNQLEKLPELQN--SSFLKIIDV 160

Query: 217 SNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFS 276
            NN  +  +P        L  +    N   E    P L     L  +   +N        
Sbjct: 161 DNNSLK-KLPD---LPPSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNN----SLKK 209

Query: 277 KDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILL 336
                  +E +   NN    ++ E L N   L  +   +N L   +P       +LE L 
Sbjct: 210 LPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPP---SLEALN 263

Query: 337 MSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDM 396
           + +N L  ++P    +   L +     + LS          +L +L    N +   + D+
Sbjct: 264 VRDNYLT-DLPELPQSLTFLDVSENIFSGLSEL------PPNLYYLNASSNEIRS-LCDL 315

Query: 397 LFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENV 456
                 L  L++  N L  ++P    +L RL     S N     +P    N+     + +
Sbjct: 316 P---PSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQNL-----KQL 362

Query: 457 DLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNL 516
            +    L  FP +            L +     ++   PQ +K                 
Sbjct: 363 HVEYNPLREFPDI------PESVEDLRMNSHLAEVPELPQNLKQ---------------- 400

Query: 517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNR 576
                L +  N L    P     ++    L ++   +      +      +E     ++ 
Sbjct: 401 -----LHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 577 LS 578
             
Sbjct: 452 HH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (281), Expect = 2e-26
 Identities = 84/494 (17%), Positives = 166/494 (33%), Gaps = 67/494 (13%)

Query: 117 LELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNN-TKLEVLFLTNNSFTGN 175
           +   N S   +   L H  +L  + +   N+      +   +   +              
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 176 LRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKEL 235
            RL +      H L+ ++   + +LP+        L  L  S N     +P     +K L
Sbjct: 63  SRLRDCLDRQAHELELNNLG-LSSLPELPP----HLESLVASCNSLT-ELPELPQSLKSL 116

Query: 236 IILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFS 295
           ++ + +    S+            L +L +S+N    +   +  N + ++ + ++NN   
Sbjct: 117 LVDNNNLKALSDLPP--------LLEYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK 166

Query: 296 GKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRT 355
            K+ +       L  +   +N L   +P  + N   L  +   NN L+  +P   L+   
Sbjct: 167 -KLPDLP---PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLS--- 216

Query: 356 LKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG 415
           L+ +    N L   +    NL  L  +Y   N L   +PD+      L  L++R N L  
Sbjct: 217 LESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDLP---PSLEALNVRDNYLT- 270

Query: 416 QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIG 475
            +P+    L  L   D+S N F+  +     N     +  ++    E+     L      
Sbjct: 271 DLPELPQSLTFL---DVSENIFS-GLSELPPN-----LYYLNASSNEIRSLCDL------ 315

Query: 476 TYYNSTLDLEVCK-RDMFTSPQQVKVEFVTKNRYEL--YNGSNLNYMVGLDLSCNELTGN 532
                 L++   K  ++   P +++    + N          NL     L +  N L   
Sbjct: 316 PPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQ---LHVEYNPLR-E 371

Query: 533 VPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLS 592
            P     ++     +L  N     +P    NL+    L +  N L  + P        + 
Sbjct: 372 FPDIPESVE-----DLRMNSHLAEVPELPQNLK---QLHVETNPLR-EFPD---IPESVE 419

Query: 593 NFNVSYNNLSGLIP 606
           +  ++   +     
Sbjct: 420 DLRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (255), Expect = 5e-23
 Identities = 98/458 (21%), Positives = 159/458 (34%), Gaps = 79/458 (17%)

Query: 2   SGSLTNLYIFLTGLANLTILQVLDLSGSSSNCL-KYLSHLKVLDISHNQLSGSLSSTITS 60
           +G    + +             L+L+    + L +   HL+ L  S N L+  L     S
Sbjct: 54  NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQS 112

Query: 61  LTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTF----QLKV 116
           L SL   + +        P         LE L +S  NN L       LP       LK+
Sbjct: 113 LKSLLVDNNNLKALSDLPP--------LLEYLGVS--NNQL-----EKLPELQNSSFLKI 157

Query: 117 LELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL 176
           +++ N SL  +P        L+++    N L  + P   LQN   L  ++  NNS     
Sbjct: 158 IDVDNNSLKKLPDLPPS---LEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLK--- 208

Query: 177 RLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELI 236
           +LP+     L  + A +N  +  LP+     L  L  +   NN  +  +P     ++ L 
Sbjct: 209 KLPDLPLS-LESIVAGNNI-LEELPELQN--LPFLTTIYADNNLLK-TLPDLPPSLEALN 263

Query: 237 ILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSG 296
           +      +  E           SL FLD+S+N     F         + +L   +N+   
Sbjct: 264 VRDNYLTDLPELPQ--------SLTFLDVSEN----IFSGLSELPPNLYYLNASSNEIRS 311

Query: 297 KIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTL 356
             +        L +L++S+N L   +P        LE L+ S N L   +P    N   L
Sbjct: 312 LCDL----PPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQN---L 359

Query: 357 KLLSVSENYLS------GSMTS----------SFNLSSLKHLYVQKNALSGPIPDMLFRS 400
           K L V  N L        S+                 +LK L+V+ N L    PD+    
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE-FPDIP--- 415

Query: 401 SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN 438
             +  L +    +            +L      H+  +
Sbjct: 416 ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.8 bits (231), Expect = 4e-20
 Identities = 82/437 (18%), Positives = 150/437 (34%), Gaps = 90/437 (20%)

Query: 15  LANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNF 74
             N+        + S         + +  +++ ++L   L            L+L+    
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------DRQAHELELNNLG- 82

Query: 75  EGPCPLSSL-ANHSKLEVLLLSSTNNMLLVKTENFLPT--FQLKVLELANCSLNVVPTFL 131
                LSSL      LE L+ S   N L       LP     LK L + N +L  +    
Sbjct: 83  -----LSSLPELPPHLESLVAS--CNSL-----TELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 132 LHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDA 191
                L+YL +S N L    P   LQN++ L+++ + NNS     +LP+           
Sbjct: 131 PL---LEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLK---KLPDL---------- 171

Query: 192 SSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFST 251
                              L  +   NN  E      +  +  L  ++   N+  +    
Sbjct: 172 ----------------PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDL 213

Query: 252 PFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQL 311
           P      SL  +   +N    +   +  NL  +  +Y +NN     + +       L  L
Sbjct: 214 PL-----SLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLP---PSLEAL 262

Query: 312 DISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMT 371
           ++  N+L+  +P    + + L++     + L    P        L  L+ S N +    +
Sbjct: 263 NVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR---S 311

Query: 372 SSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMD 431
                 SL+ L V  N L   +P +     +L  L    N+L  ++P+    L++L    
Sbjct: 312 LCDLPPSLEELNVSNNKLIE-LPALP---PRLERLIASFNHLA-EVPELPQNLKQL---H 363

Query: 432 LSHNRFNGSIPSCFTNM 448
           + +N      P    ++
Sbjct: 364 VEYNPLR-EFPDIPESV 379

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  123 bits (311), Expect = 1e-30
 Identities = 80/335 (23%), Positives = 134/335 (40%), Gaps = 28/335 (8%)

Query: 36  YLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLS 95
            L++ K++   ++ +    ++ + S   +E L+L+    E      + A    ++ L + 
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMG 101

Query: 96  STNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDFPSW 154
             N +  +    F     L VL L    L+ +P  + H    L  L +S NNL       
Sbjct: 102 F-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 159

Query: 155 MLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVL 214
             Q  T L+ L L++N  T    +  +    L H + S N  + TL      I   +  L
Sbjct: 160 TFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNL-LSTLA-----IPIAVEEL 210

Query: 215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF 274
           D S+N     +   V    EL IL L  NN ++   T +L     L  +DLS N    + 
Sbjct: 211 DASHNSIN-VVRGPV--NVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNEL--EK 262

Query: 275 FSKDL--NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNL 332
                   + ++E LY+ NN+    +         L  LD+SHN L  H+      F  L
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320

Query: 333 EILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLS 367
           E L + +N +   + +   +   LK L++S N   
Sbjct: 321 ENLYLDHNSIV-TLKLSTHHT--LKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (276), Expect = 4e-26
 Identities = 69/406 (16%), Positives = 136/406 (33%), Gaps = 71/406 (17%)

Query: 34  LKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLL 93
           L+Y      + I              +L + + +    +      P + L +  ++E+L 
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLN 75

Query: 94  LSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDFP 152
           L+    +  + T  F     ++ L +   ++  +P  +      L  L L  N+L    P
Sbjct: 76  LND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 153 SWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLL 212
             +  N  KL  L +                         SNN +  +  D       L 
Sbjct: 134 RGIFHNTPKLTTLSM-------------------------SNNNLERIEDDTFQATTSLQ 168

Query: 213 VLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG 272
            L +S+N                 + H+  +               SL+  ++S N    
Sbjct: 169 NLQLSSNR----------------LTHVDLSLIP------------SLFHANVSYNLL-- 198

Query: 273 QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNL 332
              +  + + +   L   +N  +  +   +    +L  L + HN L+     W+ N+  L
Sbjct: 199 STLAIPIAVEE---LDASHNSIN-VVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGL 250

Query: 333 EILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGP 392
             + +S N LE  +    +  + L+ L +S N L         + +LK L +  N L   
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH- 309

Query: 393 IPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN 438
           +     +  +L  L L  N++   +         L  + LSHN ++
Sbjct: 310 VERNQPQFDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (275), Expect = 6e-26
 Identities = 67/334 (20%), Positives = 128/334 (38%), Gaps = 30/334 (8%)

Query: 15  LANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
           L +   +++L+L+        +    Y   ++ L +  N +         ++  L  L L
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
             N+     P     N  KL  L +S+ NN+  ++ + F  T  L+ L+L++  L  V  
Sbjct: 125 ERNDLSS-LPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 182

Query: 130 FLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL 189
            L+    L + ++S N L        L     +E L  ++NS      +    +  L  L
Sbjct: 183 SLIPS--LFHANVSYNLLS------TLAIPIAVEELDASHNSIN---VVRGPVNVELTIL 231

Query: 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDF 249
               NN +      +      L+ +D+S N  E  +     +M+ L  L++S N      
Sbjct: 232 KLQHNN-LTDTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL- 287

Query: 250 STPFLTGCISLWFLDLSDNNFYGQFFSKDL-NLTQMEFLYLENNKFSGKIEEGLLNSTKL 308
              +     +L  LDLS N+       ++     ++E LYL++N     ++    ++  L
Sbjct: 288 -NLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIV-TLKLSTHHT--L 341

Query: 309 YQLDISHNFLSG-HIPHWMGNFSNLEILLMSNNC 341
             L +SHN      +     N +   +     +C
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.2 bits (245), Expect = 4e-22
 Identities = 60/351 (17%), Positives = 126/351 (35%), Gaps = 42/351 (11%)

Query: 258 ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNF 317
              + + +        F  +D+ L   + +  +N+         L +  ++  L+++   
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80

Query: 318 LSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSMTSSF-N 375
           +     +       ++ L M  N +   +P  +  +   L +L +  N LS      F N
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 376 LSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH 434
              L  L +  N L   I D  F++ + L  L L  N L   +      +  L   ++S+
Sbjct: 140 TPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSY 195

Query: 435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTS 494
           N  + ++           +E +D     +++        +     + L L          
Sbjct: 196 NLLS-TLAIPIA------VEELDASHNSINVVRGPVNVEL-----TILKL---------- 233

Query: 495 PQQVKVEFVTKNR-YELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL 553
                      N   +     N   +V +DLS NEL   +      +Q++  L +S+N L
Sbjct: 234 ---------QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 554 SGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
             ++      +  ++ LDLS+N L   +     + + L N  + +N++  L
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.2 bits (219), Expect = 8e-19
 Identities = 61/329 (18%), Positives = 119/329 (36%), Gaps = 39/329 (11%)

Query: 279 LNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS 338
                   ++++            +       +   ++ +       + +F  +E+L ++
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 339 NNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDML 397
           +  +E           T++ L +  N +       F N+  L  L +++N LS  +P  +
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGI 136

Query: 398 FRS-SKLMTLDLRGNNLEGQIPDQICQ-LRRLGMMDLSHNRFNGSIPSCFTNMLQWTIEN 455
           F +  KL TL +  NNLE +I D   Q    L  + LS NR      S   ++      +
Sbjct: 137 FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL-----FH 190

Query: 456 VDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSN 515
            ++    LS                 LD      ++   P  V++               
Sbjct: 191 ANVSYNLLSTLAIPIAV-------EELDASHNSINVVRGPVNVELTI------------- 230

Query: 516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN 575
                 L L  N LT    + + +   +  ++LS+N L   +   F  +Q +E L +SNN
Sbjct: 231 ------LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 576 RLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
           RL   +      +  L   ++S+N+L  +
Sbjct: 283 RLV-ALNLYGQPIPTLKVLDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 20/180 (11%)

Query: 4   SLTNLYI---FLTGLANLTILQVLDLSGSSSNCLKYL-----SHLKVLDISHNQLSGSLS 55
           SL +  +    L+ LA    ++ LD S    N +  +       L +L + HN L+   +
Sbjct: 187 SLFHANVSYNLLSTLAIPIAVEELDASH---NSINVVRGPVNVELTILKLQHNNLTD--T 241

Query: 56  STITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLK 115
           + + +   L  +DLSYN  E            +LE L +S  NN L+       P   LK
Sbjct: 242 AWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYIS--NNRLVALNLYGQPIPTLK 298

Query: 116 VLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGN 175
           VL+L++  L  V         L+ L L  N++V    +  L  +  L+ L L++N +  N
Sbjct: 299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV----TLKLSTHHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 47/284 (16%), Positives = 102/284 (35%), Gaps = 26/284 (9%)

Query: 331 NLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALS 390
           N++       C++ N+    + +  + +   +++   G       L++ K +  + + + 
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYD-VHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMR 58

Query: 391 GPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNML 449
             +P  L  S  ++  L+L    +E            +  + +  N      P  F N+ 
Sbjct: 59  K-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 450 QWTIENVDLFGGELSIFPPLGFCYIGT------YYNSTLDLEVCKRDMFTSPQQVKVEFV 503
              +  + L   +LS  P   F             N+   LE  + D F +   ++   +
Sbjct: 118 L--LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN---LERIEDDTFQATTSLQNLQL 172

Query: 504 TKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSN 563
           + NR    + S +  +   ++S N L+      +     +  L+ SHN ++         
Sbjct: 173 SSNRLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVE 227

Query: 564 LQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
           L     L L +N L+      L+    L   ++SYN L  ++  
Sbjct: 228 LT---ILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYH 266

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 35/161 (21%)

Query: 12  LTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEY 66
              L N   L  +DLS +       +    +  L+ L IS+N+L  +L+     + +L+ 
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 67  LDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNV 126
           LDLS+N+      L  +                       N     +L+ L L + S+  
Sbjct: 300 LDLSHNH------LLHV---------------------ERNQPQFDRLENLYLDHNSIVT 332

Query: 127 VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFL 167
           +     H   LK L LS N+   +    + +N  +  V   
Sbjct: 333 LKLSTHHT--LKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (300), Expect = 2e-28
 Identities = 80/335 (23%), Positives = 134/335 (40%), Gaps = 28/335 (8%)

Query: 36  YLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLS 95
            L++ K++   ++ +    ++ + S   +E L+L+    E      + A    ++ L + 
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMG 107

Query: 96  STNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDFPSW 154
             N +  +    F     L VL L    L+ +P  + H    L  L +S NNL       
Sbjct: 108 F-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 165

Query: 155 MLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVL 214
             Q  T L+ L L++N  T    +  +    L H + S N  + TL      I   +  L
Sbjct: 166 TFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNL-LSTLA-----IPIAVEEL 216

Query: 215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF 274
           D S+N     +   V    EL IL L  NN ++   T +L     L  +DLS N    + 
Sbjct: 217 DASHNSIN-VVRGPV--NVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNEL--EK 268

Query: 275 FSKDL--NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNL 332
                   + ++E LY+ NN+    +         L  LD+SHN L  H+      F  L
Sbjct: 269 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326

Query: 333 EILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLS 367
           E L + +N +   + +   +   LK L++S N   
Sbjct: 327 ENLYLDHNSIV-TLKLSTHHT--LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (270), Expect = 1e-24
 Identities = 77/441 (17%), Positives = 155/441 (35%), Gaps = 42/441 (9%)

Query: 15  LANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
           L +   +++L+L+        +    Y   ++ L +  N +         ++  L  L L
Sbjct: 71  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
             N+     P     N  KL  L +S+ NN+  ++ + F  T  L+ L+L++  L  V  
Sbjct: 131 ERNDLSS-LPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188

Query: 130 FLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL 189
            L+    L + ++S N L        L     +E L  ++NS      +    +  L  L
Sbjct: 189 SLIPS--LFHANVSYNLLS------TLAIPIAVEELDASHNSIN---VVRGPVNVELTIL 237

Query: 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDF 249
               NN +      +      L+ +D+S N  E  +     +M+ L  L++S N      
Sbjct: 238 KLQHNN-LTDTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL- 293

Query: 250 STPFLTGCISLWFLDLSDNNFYGQFFSKDL-NLTQMEFLYLENNKFSGKIEEGLLNSTKL 308
              +     +L  LDLS N+       ++     ++E LYL++N     ++    ++  L
Sbjct: 294 -NLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIV-TLKLSTHHT--L 347

Query: 309 YQLDISHNFLSG-HIPHWMGNFSNLEILLMSNNCLEGNIPVQLL-------NHRTLKLLS 360
             L +SHN      +     N +   +     +C         L        +    L  
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQY 407

Query: 361 VSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI-- 417
           ++   +   +  +    S+   +   ++                  L+   N L  ++  
Sbjct: 408 IALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

Query: 418 --PDQICQLRRLGMMDLSHNR 436
              +QI Q + L  +    + 
Sbjct: 468 LTNEQIQQEQLLQGLHAEIDT 488

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.8 bits (238), Expect = 1e-20
 Identities = 60/351 (17%), Positives = 126/351 (35%), Gaps = 42/351 (11%)

Query: 258 ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNF 317
              + + +        F  +D+ L   + +  +N+         L +  ++  L+++   
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86

Query: 318 LSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSMTSSF-N 375
           +     +       ++ L M  N +   +P  +  +   L +L +  N LS      F N
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 376 LSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH 434
              L  L +  N L   I D  F++ + L  L L  N L   +      +  L   ++S+
Sbjct: 146 TPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSY 201

Query: 435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTS 494
           N  + ++           +E +D     +++        +     + L L          
Sbjct: 202 NLLS-TLAI------PIAVEELDASHNSINVVRGPVNVEL-----TILKL---------- 239

Query: 495 PQQVKVEFVTKNR-YELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL 553
                      N   +     N   +V +DLS NEL   +      +Q++  L +S+N L
Sbjct: 240 ---------QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 554 SGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
             ++      +  ++ LDLS+N L   +     + + L N  + +N++  L
Sbjct: 291 V-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.1 bits (213), Expect = 1e-17
 Identities = 62/329 (18%), Positives = 126/329 (38%), Gaps = 17/329 (5%)

Query: 283 QMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
           Q  +           I+  L      Y + I       +        +N +I+   N+ +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 343 EGNIPVQLL-NHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS 400
              +P  LL + R ++LL++++  +    T +F    +++ LY+  NA+   +P  +F++
Sbjct: 64  R-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQN 121

Query: 401 -SKLMTLDLRGNNLEGQIPDQI-CQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL 458
              L  L L  N+L   +P  I     +L  + +S+N         F       ++N+ L
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS--LQNLQL 178

Query: 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNY 518
               L+         +        ++          P  V+    + N   +  G     
Sbjct: 179 SSNRLTHVDLSLIPSL-----FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233

Query: 519 MVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS 578
           +  L L  N LT    + + +   +  ++LS+N L   +   F  +Q +E L +SNNRL 
Sbjct: 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 579 GQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
             +      +  L   ++S+N+L  +  +
Sbjct: 292 -ALNLYGQPIPTLKVLDLSHNHLLHVERN 319

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.8 bits (155), Expect = 1e-10
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 20/180 (11%)

Query: 4   SLTNLYI---FLTGLANLTILQVLDLSGSSSNCLKYL-----SHLKVLDISHNQLSGSLS 55
           SL +  +    L+ LA    ++ LD S    N +  +       L +L + HN L+   +
Sbjct: 193 SLFHANVSYNLLSTLAIPIAVEELDASH---NSINVVRGPVNVELTILKLQHNNLTD--T 247

Query: 56  STITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLK 115
           + + +   L  +DLSYN  E            +LE L +S  NN L+       P   LK
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYIS--NNRLVALNLYGQPIPTLK 304

Query: 116 VLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGN 175
           VL+L++  L  V         L+ L L  N++V    +  L  +  L+ L L++N +  N
Sbjct: 305 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV----TLKLSTHHTLKNLTLSHNDWDCN 360

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 6e-07
 Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 35/164 (21%)

Query: 12  LTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEY 66
              L N   L  +DLS +       +    +  L+ L IS+N+L  +L+     + +L+ 
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 67  LDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNV 126
           LDLS+N+      L  +                       N     +L+ L L + S+  
Sbjct: 306 LDLSHNH------LLHV---------------------ERNQPQFDRLENLYLDHNSIVT 338

Query: 127 VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN 170
           +     H   LK L LS N+   +    + +N  +  V     +
Sbjct: 339 LKLSTHHT--LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (279), Expect = 7e-27
 Identities = 50/338 (14%), Positives = 102/338 (30%), Gaps = 32/338 (9%)

Query: 28  GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHS 87
           GSS +   + S  + L    +         ++        D +             AN +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN-----RWHSAWRQANSN 56

Query: 88  KLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNL 147
             ++   +                     LEL +  L   P        L+++ +    L
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116

Query: 148 VGDFPSWMLQNNTKLEVLFLTNNSFT------GNLRLPNTKHDFLHHLDASSNNFIGTLP 201
           + + P   +Q    LE L L  N          +L         L  L   +   +  LP
Sbjct: 117 M-ELPDT-MQQFAGLETLTLARNPLRALPASIASLN-------RLRELSIRACPELTELP 167

Query: 202 QDMGTI--------LKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPF 253
           + + +         L  L  L +       ++P+S+  ++ L  L +  +  S     P 
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA--LGPA 224

Query: 254 LTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDI 313
           +     L  LDL        +         ++ L L++      +   +   T+L +LD+
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 314 SHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLL 351
                   +P  +       I+L+  + L+  +     
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPH-LQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.9 bits (242), Expect = 4e-22
 Identities = 57/337 (16%), Positives = 106/337 (31%), Gaps = 38/337 (11%)

Query: 280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSN 339
           + +  E LY + +       + L    + Y  D +    +        N +N +I   + 
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 340 NCLEGNIP-VQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLF 398
             L+     ++         L +    L      +F LS L+H+ +    L   +PD + 
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME-LPDTMQ 124

Query: 399 RSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTI----- 453
           + + L TL L  N L   +P  I  L RL  + +        +P    +           
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 454 --ENVDLFGGELSIFPPLGFCYIGTYYN-STLDLEVCKRDMFTSPQQVKVEFVTKNRYEL 510
             +++ L    +   P      I    N  +L +             +            
Sbjct: 184 NLQSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPLSAL--GPAI------------ 225

Query: 511 YNGSNLNYMVGLDLS-CNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIES 569
               +L  +  LDL  C  L    P   G    ++ L L       ++P     L  +E 
Sbjct: 226 ---HHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 570 LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606
           LDL       ++P+ + +L       V  +  + L  
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 7e-22
 Identities = 52/325 (16%), Positives = 101/325 (31%), Gaps = 30/325 (9%)

Query: 114 LKVLELANCS-LNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
            + L     + L      L         D +  +      +W   N+   ++   T  + 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS-----AWRQANSNNPQIETRTGRAL 68

Query: 173 TGNLR-LPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGE 231
                 L +        L+  S   +   P      L  L  + I        +P ++ +
Sbjct: 69  KATADLLEDATQPGRVALELRSVP-LPQFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 232 MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLEN 291
              L  L L++N          +     L  L +               LT+     L  
Sbjct: 126 FAGLETLTLARNPLRA--LPASIASLNRLRELSIRACP----------ELTE-----LPE 168

Query: 292 NKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLL 351
              S            L  L +    +   +P  + N  NL+ L + N+ L   +   + 
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH 226

Query: 352 NHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRG 410
           +   L+ L +       +    F   + LK L ++  +    +P  + R ++L  LDLRG
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 411 NNLEGQIPDQICQLRRLGMMDLSHN 435
                ++P  I QL    ++ +  +
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 1e-19
 Identities = 48/248 (19%), Positives = 86/248 (34%), Gaps = 30/248 (12%)

Query: 14  GLANLTILQVLDLSGSS----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
             A       L+L         +    LSHL+ + I    L   L  T+     LE L L
Sbjct: 76  EDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134

Query: 70  SYNNFEG-PCPLSSLANHSKLEVLLLSSTNNM--------LLVKTENFLPTFQLKVLELA 120
           + N     P   +S+A+ ++L  L + +   +            +        L+ L L 
Sbjct: 135 ARNPLRALP---ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 121 NCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL---- 176
              +  +P  + +  +LK L +  + L        + +  KLE L L   +   N     
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSA-LGP-AIHHLPKLEELDLRGCTALRNYPPIF 249

Query: 177 -RLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKEL 235
                     L  L     + + TLP D+   L +L  LD+        +PS + ++   
Sbjct: 250 GGRAP-----LKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 236 IILHLSKN 243
            I+ +  +
Sbjct: 304 CIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 8e-19
 Identities = 47/374 (12%), Positives = 111/374 (29%), Gaps = 69/374 (18%)

Query: 228 SVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFL 287
                     L+   +     +    L+     +  D +          +  N    +  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHD-VLSQWQRHYNADRNRW----HSAWRQANSNNPQIE 61

Query: 288 YLENNKFSGKIEE-GLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI 346
                      +            L++    L    P      S+L+ + +    L   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 347 PVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSS---- 401
           P  +     L+ L+++ N L  ++ +S  +L+ L+ L ++       +P+ L  +     
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 402 -----KLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENV 456
                 L +L L    +   +P  I  L+ L  + + ++  + ++     ++ +  +E +
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK--LEEL 234

Query: 457 DLFGG-ELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSN 515
           DL G   L  +PP                                             + 
Sbjct: 235 DLRGCTALRNYPP----------------------------------------IFGGRAP 254

Query: 516 LNYMVGLDLS-CNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSN 574
           L     L L  C+ L   +P +I  L ++  L+L        +P   + L     + +  
Sbjct: 255 LKR---LILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 575 NRLSGQIPAQLIEL 588
           +  +     + +  
Sbjct: 311 HLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.1 bits (201), Expect = 8e-17
 Identities = 35/273 (12%), Positives = 76/273 (27%), Gaps = 32/273 (11%)

Query: 183 HDFLHH------LDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELI 236
           H   HH      L    +  +      +    ++    D +  H                
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWHS----AWRQANSNNPQ 59

Query: 237 ILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL-NLTQMEFLYLENNKFS 295
           I   +                     L+L         F      L+ ++ + ++     
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 296 GKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRT 355
            ++ + +     L  L ++ N L   +P  + + + L  L +        +P  L +   
Sbjct: 118 -ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 356 LKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG 415
                               L +L+ L ++   +   +P  +     L +L +R + L  
Sbjct: 176 SGEHQ--------------GLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS- 219

Query: 416 QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM 448
            +   I  L +L  +DL       + P  F   
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.2 bits (196), Expect = 3e-16
 Identities = 46/314 (14%), Positives = 99/314 (31%), Gaps = 38/314 (12%)

Query: 304 NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE 363
           +S+    L    +         +  +        +          +  N    ++ + + 
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 364 NYLSGSMTSSFNLSS--LKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQI 421
             L  +     + +      L ++   L    PD  FR S L  + +    L  ++PD +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 422 CQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGG-ELSIFPP-LGFCYIGTYYN 479
            Q   L  + L+ N    ++P+   ++ +  +  + +    EL+  P  L        + 
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNR--LRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 480 S-----TLDLEVCKRDMFTS-PQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNV 533
                 +L LE        S P  +               +NL  +  L +  + L+  +
Sbjct: 181 GLVNLQSLRLEWTG---IRSLPASI---------------ANLQNLKSLKIRNSPLSA-L 221

Query: 534 PSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSN 593
              I  L K+  L+L       + P  F     ++ L L +      +P  +  L  L  
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 594 FNVSYNNLSGLIPD 607
            ++        +P 
Sbjct: 282 LDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 35/250 (14%), Positives = 74/250 (29%), Gaps = 40/250 (16%)

Query: 366 LSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR 425
           +  S     + S  ++LY Q +    P  D+L +  +    D    +       +     
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 426 RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYN-STLDL 484
              +   +      +      +  Q     ++L    L  FP           +   + +
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQFPD----QAFRLSHLQHMTI 111

Query: 485 EVCKRDMFTS-PQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKI 543
           +          P  +                    +  L L+ N L   +P+ I  L ++
Sbjct: 112 DAAG---LMELPDTM---------------QQFAGLETLTLARNPLR-ALPASIASLNRL 152

Query: 544 RGLNLSHNCLSGSIPRSFSNLQMI---------ESLDLSNNRLSGQIPAQLIELNFLSNF 594
           R L++        +P   ++             +SL L    +   +PA +  L  L + 
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 595 NVSYNNLSGL 604
            +  + LS L
Sbjct: 212 KIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 13/142 (9%)

Query: 4   SLTNLYIFLTGL-------ANLTILQVLDLSGSS----SNCLKYLSHLKVLDISHNQLSG 52
           +L +L +  TG+       ANL  L+ L +  S        + +L  L+ LD+       
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243

Query: 53  SLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTF 112
           +          L+ L L   +     P   +   ++LE L L      L           
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRG-CVNLSRLPSLIAQLP 301

Query: 113 QLKVLELANCSLNVVPTFLLHQ 134
              ++ +       +       
Sbjct: 302 ANCIILVPPHLQAQLDQHRPVA 323

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  112 bits (281), Expect = 3e-26
 Identities = 99/426 (23%), Positives = 157/426 (36%), Gaps = 41/426 (9%)

Query: 17  NLTILQVLDLSGSSSNCLKYLS-----HLKVLDISHNQL-SGSLSSTITSLTSLEYLDLS 70
               L+ LDLS    N L  +S     +LK LD+S N   +  +     +++ L++L LS
Sbjct: 67  FNQELEYLDLS---HNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 71  YNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTF 130
             + E    +  +A+ +  +VLL+         +    L  F  + L +     N    F
Sbjct: 124 TTHLEKS-SVLPIAHLNISKVLLVLG-ETYGEKEDPEGLQDFNTESLHI-VFPTNKEFHF 180

Query: 131 LLHQYDLKYLDLSLNNLVGDFPSWMLQN----------NTKLEVLFLTNNSFTGNL---R 177
           +L        +L L+N+                     N KL  L L N   T N     
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 178 LPNTKHDFLHHLDASSNNFIGTLPQDM----GTILKKLLVLDISNNHFEGNIPSSVGEMK 233
           L    H  + +   S+    G L        GT LK L +  + ++ F            
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 234 ELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNK 293
            + I + + +  +        +       LD S+N      F    +LT++E L L+ N+
Sbjct: 301 NMNIKNFTVSG-TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359

Query: 294 FS--GKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFS---NLEILLMSNNCLEGNIPV 348
                KI E       L QLDIS N +S       G+ S   +L  L MS+N L   I  
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSNILTDTIFR 417

Query: 349 QLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLD 407
            L     +K+L +  N +         L +L+ L V  N L   +PD +F   + L  + 
Sbjct: 418 CLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIW 474

Query: 408 LRGNNL 413
           L  N  
Sbjct: 475 LHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (252), Expect = 1e-22
 Identities = 89/470 (18%), Positives = 160/470 (34%), Gaps = 63/470 (13%)

Query: 21  LQVLDLSG-----SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFE 75
             +L++S        ++ +  LS L++L ISHN++     S       LEYLDLS+N   
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-- 80

Query: 76  GPCPLSSLANHS--KLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSL-NVVPTFLL 132
               L  ++ H    L+ L LS      L   + F    QLK L L+   L       + 
Sbjct: 81  ----LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 133 HQYDLKYLDLSLNNLVGDFPSWMLQN--NTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLD 190
           H    K L +             LQ+     L ++F TN  F   L +       L   +
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 191 ASSNNFIGTLPQDMGTILKK--------------------------------LLVLDISN 218
                        +  + K                                 +    ISN
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 219 NHFEGNIPSSVGE-----MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQ 273
              +G +     +     +K L I  +  + F    S  +     ++   + + +     
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY-EIFSNMNIKNFTVSGTRMV 315

Query: 274 FFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNF---S 330
                  ++    L   NN  +  + E   + T+L  L +  N L   +           
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMK 374

Query: 331 NLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNAL 389
           +L+ L +S N +  +      +  ++L  L++S N L+ ++        +K L +  N +
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKI 433

Query: 390 SGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ-LRRLGMMDLSHNRFN 438
              IP  + +   L  L++  N L+  +PD I   L  L  + L  N ++
Sbjct: 434 KS-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 99.6 bits (248), Expect = 4e-22
 Identities = 76/433 (17%), Positives = 148/433 (34%), Gaps = 47/433 (10%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
               +L+IS N +S   +S I SL+ L  L +S+N       +  L              
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNR------IQYLDISV---------- 64

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ 157
                     F    +L+ L+L++  L  +         LK+LDLS N            
Sbjct: 65  ----------FKFNQELEYLDLSHNKLVKISCHPTVN--LKHLDLSFNAFDALPICKEFG 112

Query: 158 NNTKLEVLFLTNNSFTGN--LRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLD 215
           N ++L+ L L+      +  L + +     +  +   +               + L ++ 
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 216 ISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPF-----LTGCISLWFLDLSDNNF 270
            +N  F   +  SV  +  L + ++         S        L     L  L L++   
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 271 YGQFFSKDLNL---TQMEFLYLENNKFSGKIEEGLLNST-----KLYQLDISHNFLSGHI 322
               F + L L   T + +  + N K  G+++    + +      L    +  +      
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 323 PHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKH 381
            +    FSN+ I   + +       +          L  S N L+ ++  +  +L+ L+ 
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 382 LYVQKNALS--GPIPDMLFRSSKLMTLDLRGNNLEGQIPDQIC-QLRRLGMMDLSHNRFN 438
           L +Q N L     I +M  +   L  LD+  N++        C   + L  +++S N   
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 439 GSIPSCFTNMLQW 451
            +I  C    ++ 
Sbjct: 413 DTIFRCLPPRIKV 425

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 71/454 (15%), Positives = 143/454 (31%), Gaps = 47/454 (10%)

Query: 160 TKLEVLFLTNNSFTGNLRLPNT---KHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDI 216
            K  +L ++ N  +    L  +       L  L  S N  I  L   +    ++L  LD+
Sbjct: 21  QKTTILNISQNYIS---ELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDL 76

Query: 217 SNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFS 276
           S+N     I         L  L LS N F              L FL LS  +       
Sbjct: 77  SHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 277 KDLNLTQMEFLYLENNKFSGKIEEGLLNS---TKLYQLDISHNFLSGHIPHWMGNFSNLE 333
              +L   + L +    +  K +   L       L+ +  ++      +   +   +NLE
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 334 ILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPI 393
           +          NI   L +++    LS+     +    S+  L++++  +     +   +
Sbjct: 194 LS---------NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244

Query: 394 PDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTI 453
                    +  + L+G             L+ L +  +  + F       +       I
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 454 ENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNG 513
           +N  + G  +             +    LD                            N 
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLH----LDFSNNLLTDTVF----------------ENC 344

Query: 514 SNLNYMVGLDLSCNELT--GNVPSEIGDLQKIRGLNLSHNCLSGSIPR-SFSNLQMIESL 570
            +L  +  L L  N+L     +      ++ ++ L++S N +S    +   S  + + SL
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

Query: 571 DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
           ++S+N L+  I   L     +   ++  N +  +
Sbjct: 405 NMSSNILTDTIFRCLPPR--IKVLDLHSNKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 60/421 (14%), Positives = 129/421 (30%), Gaps = 63/421 (14%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP 252
           S N+I  L       L KL +L IS+N  +    S     +EL  L LS N   +    P
Sbjct: 29  SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHP 88

Query: 253 FLTGCISLWFLDLSDNNF----YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKL 308
                ++L  LDLS N F      + F    N++Q++FL L            + +    
Sbjct: 89  T----VNLKHLDLSFNAFDALPICKEFG---NMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141

Query: 309 YQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG 368
             L +                 +     +            +L+     + ++  + +  
Sbjct: 142 KVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK- 198

Query: 369 SMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLG 428
                  +          + L+    +    +  L  ++   N+       Q+     + 
Sbjct: 199 ------CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR--ILQLVWHTTVW 250

Query: 429 MMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCK 488
              +S+ +  G +     +    +++ + +                          +V  
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSI-------------------------HQVVS 285

Query: 489 RDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNL 548
                    +   F           SN+N     + + +            +     L+ 
Sbjct: 286 DVFGFPQSYIYEIF-----------SNMNI---KNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 549 SHNCLSGSIPRSFSNLQMIESLDLSNNRLS--GQIPAQLIELNFLSNFNVSYNNLSGLIP 606
           S+N L+ ++  +  +L  +E+L L  N+L    +I     ++  L   ++S N++S    
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 607 D 607
            
Sbjct: 392 K 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 8e-09
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 33/249 (13%)

Query: 1   YSGSLTNLYIFLTGLANLTILQV--LDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTI 58
                 +     T L  L+I QV         S   +  S++ + + + +          
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

Query: 59  TSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLE 118
           + ++   +LD S N         +  + ++LE L+L                  QLK   
Sbjct: 321 SKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMN---------------QLK--- 361

Query: 119 LANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL-- 176
                L+ +         L+ LD+S N++  D           L  L +++N  T  +  
Sbjct: 362 ----ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417

Query: 177 RLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELI 236
            LP      +  LD  SN  I ++P+ +   L+ L  L++++N  +         +  L 
Sbjct: 418 CLPPR----IKVLDLHSNK-IKSIPKQV-VKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

Query: 237 ILHLSKNNF 245
            + L  N +
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 51/307 (16%), Positives = 94/307 (30%), Gaps = 16/307 (5%)

Query: 311 LDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM 370
           +D S N L  H+P          IL +S N +       +L+   L++L +S N +    
Sbjct: 5   VDRSKNGLI-HVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 371 TSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG-QIPDQICQLRRLG 428
            S F     L++L +  N L             L  LDL  N  +   I  +   + +L 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 429 MMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCK 488
            + LS      S      + L  +   + L         P G     T     +      
Sbjct: 119 FLGLSTTHLEKSSVLPIAH-LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT--- 174

Query: 489 RDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNL 548
                    + V   T    EL N   +          + L     +       +  +  
Sbjct: 175 --NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 549 SHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK 608
           + N     +         +    +SN +L GQ+  +  + +  S   +S + +   +   
Sbjct: 233 TWNSFIRIL--QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 609 GQYSTFD 615
            Q   ++
Sbjct: 291 PQSYIYE 297

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (280), Expect = 4e-26
 Identities = 60/357 (16%), Positives = 122/357 (34%), Gaps = 59/357 (16%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
           +  ++LD+  N++         S   LE L+L+ N       +S++   +          
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI------VSAVEPGA---------- 75

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYD-LKYLDLSLNNLVGDFPSWML 156
                     F   F L+ L L +  L ++P  +      L  LD+S N +V     +M 
Sbjct: 76  ----------FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMF 124

Query: 157 QNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDI 216
           Q+   L+ L +                          +N +  +     + L  L  L +
Sbjct: 125 QDLYNLKSLEV-------------------------GDNDLVYISHRAFSGLNSLEQLTL 159

Query: 217 SNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFS 276
              +       ++  +  LI+L L   N +             L  L++S   +      
Sbjct: 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTP 218

Query: 277 KDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGHIPHWMGNFSNLEIL 335
             L    +  L + +   +  +    +     L  L++S+N +S      +     L+ +
Sbjct: 219 NCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277

Query: 336 LMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALS 390
            +    L   +          L++L+VS N L+    S F ++ +L+ L +  N L+
Sbjct: 278 QLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (279), Expect = 4e-26
 Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 29/314 (9%)

Query: 21  LQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFE 75
            ++LDL  +     + +      HL+ L+++ N +S        +L +L  L L  N  +
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 76  GPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLL-HQ 134
              PL      S L  L +S  N ++++    F   + LK LE+ +  L  +        
Sbjct: 94  LI-PLGVFTGLSNLTKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 135 YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGN-----LRLPNTKHDFLHHL 189
             L+ L L   NL    P+  L +   L VL L + +          RL       L  L
Sbjct: 152 NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR-----LKVL 205

Query: 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-GEMKELIILHLSKNNFSED 248
           + S   ++ T+  +    L  L  L I++ +    +P      +  L  L+LS N  S  
Sbjct: 206 EISHWPYLDTMTPNCLYGL-NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 249 FSTPFLTGCISLWFLDLSDNNFYGQFFSKDL--NLTQMEFLYLENNKFSGKIEEGLLNS- 305
             +      + L  + L                 L  +  L +  N+ +  +EE + +S 
Sbjct: 264 EGSML-HELLRLQEIQLVGGQL--AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSV 319

Query: 306 TKLYQLDISHNFLS 319
             L  L +  N L+
Sbjct: 320 GNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 57/286 (19%), Positives = 103/286 (36%), Gaps = 19/286 (6%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP 252
                  +P+    I  +  +LD+  N  +            L  L L++N  S      
Sbjct: 19  HRKRFVAVPEG---IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPG 74

Query: 253 FLTGCISLWFLDLSDNNFY---GQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKL 308
                 +L  L L  N         F+    L+ +  L +  NK    + + +      L
Sbjct: 75  AFNNLFNLRTLGLRSNRLKLIPLGVFT---GLSNLTKLDISENKIV-ILLDYMFQDLYNL 130

Query: 309 YQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLS 367
             L++  N L           ++LE L +    L  +IP + L+H   L +L +    ++
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

Query: 368 GSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ-LR 425
                SF  L  LK L +        +         L +L +   NL   +P    + L 
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV 248

Query: 426 RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGF 471
            L  ++LS+N  +    S    +L+  ++ + L GG+L++  P  F
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLR--LQEIQLVGGQLAVVEPYAF 292

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 74/349 (21%), Positives = 130/349 (37%), Gaps = 61/349 (17%)

Query: 263 LDLSDNNF---YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFL 318
           LDL  N         F+   +   +E L L  N  S  +E G  N+   L  L +  N L
Sbjct: 37  LDLGKNRIKTLNQDEFA---SFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRL 92

Query: 319 SGHIPHWM-GNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSMTSSF-N 375
              IP  +    SNL  L +S N +   +   +      LK L V +N L      +F  
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 376 LSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH 434
           L+SL+ L ++K  L+  IP         L+ L LR  N+         +L RL ++++SH
Sbjct: 151 LNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTS 494
             +  ++       L   + ++ +    L+  P L                         
Sbjct: 210 WPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPYLAV----------------------- 244

Query: 495 PQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLS 554
                               +L Y+  L+LS N ++    S + +L +++ + L    L+
Sbjct: 245 -------------------RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285

Query: 555 GSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLS 602
              P +F  L  +  L++S N+L+  +   +   +  L    +  N L+
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 58/261 (22%), Positives = 96/261 (36%), Gaps = 28/261 (10%)

Query: 15  LANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
              L+ L  LD+S +          + L +LK L++  N L        + L SLE L L
Sbjct: 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELA-NCSLNVVP 128
              N     P  +L++   L VL L    N+  ++  +F   ++LKVLE++    L+ + 
Sbjct: 160 EKCNLTS-IPTEALSHLHGLIVLRLRH-LNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 129 TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF--- 185
              L+  +L  L ++  NL    P   +++   L  L L+ N  +    +          
Sbjct: 218 PNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS---TIEG--SMLHEL 271

Query: 186 --LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKN 243
             L  +       +  +       L  L VL++S N       S    +  L  L L  N
Sbjct: 272 LRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330

Query: 244 NFSEDFSTPFLTGCISLWFLD 264
             + D        C  LW   
Sbjct: 331 PLACD--------CRLLWVFR 343

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 92.9 bits (231), Expect = 5e-20
 Identities = 58/266 (21%), Positives = 99/266 (37%), Gaps = 19/266 (7%)

Query: 15  LANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
             NL  L+ L L  +            LS+L  LDIS N++   L      L +L+ L++
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
             N+        + +  + LE L L    N+  + TE       L VL L + ++N +  
Sbjct: 136 GDNDLVYI-SHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 130 FLLHQ-YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPN---TKHDF 185
           +   + Y LK L++S    +       L     L  L +T+ + T    +P        +
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLT---AVPYLAVRHLVY 249

Query: 186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-GEMKELIILHLSKNN 244
           L  L+ S N  I T+   M   L +L  + +        +       +  L +L++S N 
Sbjct: 250 LRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQ 307

Query: 245 FSEDFSTPFLTGCISLWFLDLSDNNF 270
            +            +L  L L  N  
Sbjct: 308 LTT-LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 50/309 (16%), Positives = 103/309 (33%), Gaps = 55/309 (17%)

Query: 305 STKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSE 363
            T+   LD+  N +         +F +LE L ++ N +   +     N+   L+ L +  
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89

Query: 364 NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQI 421
           N L       F  LS+L  L + +N +   + D +F+    L +L++  N+L   I  + 
Sbjct: 90  NRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLV-YISHRA 147

Query: 422 -CQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNS 480
              L  L  + L             +++    +  + L    ++      F         
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHG--LIVLRLRHLNINAIRDYSF--------- 196

Query: 481 TLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDL 540
                                              L  +  L++S       +       
Sbjct: 197 ---------------------------------KRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 541 QKIRGLNLSHNCLSGSIPR-SFSNLQMIESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSY 598
             +  L+++H  L+ ++P  +  +L  +  L+LS N +S  I   ++  L  L    +  
Sbjct: 224 LNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVG 281

Query: 599 NNLSGLIPD 607
             L+ + P 
Sbjct: 282 GQLAVVEPY 290

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (275), Expect = 1e-25
 Identities = 87/408 (21%), Positives = 155/408 (37%), Gaps = 36/408 (8%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
           +H+  +D+S N ++    ++ + L  L++L +           ++    S L +L L   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY- 88

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVV---PTFLLHQYDLKYLDLSLNNLVGDFPSW 154
           N  L ++T  F     L+VL L  C+L+       F      L+ L L  NN+    P+ 
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 155 MLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVL 214
              N  +  VL LT N      ++ +   + L +        +          L  + + 
Sbjct: 149 FFLNMRRFHVLDLTFN------KVKSICEEDLLNFQGKHFTLLR---------LSSITLQ 193

Query: 215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF 274
           D++          +  +   +  L LS N F E  +  F           L  +N Y   
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 275 FSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEI 334
            S         F   +N  F G      L ++ +   D+S + +   +     +F++LE 
Sbjct: 254 SS----FGHTNFKDPDNFTFKG------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303

Query: 335 LLMSNNCLEGNIPVQLLNHRT-LKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGP 392
           L ++ N +   I        T L  L++S+N+L    +  F NL  L+ L +  N +   
Sbjct: 304 LTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA- 361

Query: 393 IPDMLFRS-SKLMTLDLRGNNLEGQIPDQI-CQLRRLGMMDLSHNRFN 438
           + D  F     L  L L  N L+  +PD I  +L  L  + L  N ++
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 80/420 (19%), Positives = 129/420 (30%), Gaps = 83/420 (19%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-GEMKELIILHLSKNNFSEDFST 251
           S N I  L +   + L+ L  L +        I ++    +  LIIL L  N F +   T
Sbjct: 38  SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LET 96

Query: 252 PFLTGCISLWFLDLSDNNFYGQFFSKDL--NLTQMEFLYLENNKFSGKIEEGLLNS-TKL 308
               G  +L  L L+  N  G   S +    LT +E L L +N            +  + 
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 309 YQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG 368
           + LD++ N +   I     +  N                  LL   ++ L  ++E +L  
Sbjct: 157 HVLDLTFNKVK-SICE--EDLLNF-----------QGKHFTLLRLSSITLQDMNEYWLGW 202

Query: 369 SMTSSF-NLSSLKHLYVQKNALSGPIPDMLFR---SSKLMTLDLRGNNLEGQIPDQICQL 424
               +    +S+  L +  N     +    F     +K+ +L L  +   G         
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-------- 254

Query: 425 RRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDL 484
                    H  F       F  +    ++  DL   ++       F             
Sbjct: 255 ------SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF------------- 295

Query: 485 EVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD-LQKI 543
                                        S+   +  L L+ NE+   +       L  +
Sbjct: 296 -----------------------------SHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325

Query: 544 RGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLS 602
             LNLS N L     R F NL  +E LDLS N +   +  Q    L  L    +  N L 
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 42/269 (15%), Positives = 88/269 (32%), Gaps = 39/269 (14%)

Query: 355 TLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNN 412
            +  + +S N ++    +SF  L  L+ L V++      I +  FR  S L+ L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 413 LEGQIPDQICQ-LRRLGMMDLSHNRFNGSI--PSCFTNMLQWTIENVDLFGGELSIFPPL 469
              Q+       L  L ++ L+    +G++   + F  +    +E + L    +    P 
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS--LEMLVLRDNNIKKIQPA 147

Query: 470 GFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNEL 529
            F                    F + ++  V  +T N+ +     +L    G   +   L
Sbjct: 148 SF--------------------FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187

Query: 530 TGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN 589
           +                +++   L      +      I +LDLS N     +  +  +  
Sbjct: 188 SSI-----------TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 590 FLSNFNVSYNNLSGLIPDKGQYSTFDESS 618
             +       + S  +     ++ F +  
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (264), Expect = 4e-25
 Identities = 53/345 (15%), Positives = 109/345 (31%), Gaps = 57/345 (16%)

Query: 279 LNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS 338
            N  + +   + ++     +     ++  + +LD+S N LS      +  F+ LE+L +S
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 339 NNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLF 398
           +N L   + ++ L+   L+ L ++ NY+           S++ L+   N +S  +     
Sbjct: 67  SNVLYETLDLESLST--LRTLDLNNNYV----QELLVGPSIETLHAANNNISR-VSCSRG 119

Query: 399 RSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL 458
           +      + L  N +            R+  +DL  N  +    +        T+E+++L
Sbjct: 120 QG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNL 176

Query: 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNY 518
               +                                                  + L  
Sbjct: 177 QYNFIYDVKGQVVF-----------------------------------------AKLKT 195

Query: 519 MVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS 578
              LDLS N+L   +  E      +  ++L +N L   I ++    Q +E  DL  N   
Sbjct: 196 ---LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

Query: 579 GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNL 623
                +           V+   +  L     +  T     + G  
Sbjct: 251 -CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  102 bits (257), Expect = 4e-24
 Identities = 59/303 (19%), Positives = 105/303 (34%), Gaps = 27/303 (8%)

Query: 17  NLTILQVLDLSGSS-----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSY 71
           N    ++  ++ SS     ++  +   ++K LD+S N LS   ++ +   T LE L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 72  NNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFL 131
           N          L + S L  L L+  NN +    +  L    ++ L  AN +++ V    
Sbjct: 68  NVLYE---TLDLESLSTLRTLDLN--NNYV----QELLVGPSIETLHAANNNISRVSCSR 118

Query: 132 LHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF--LHHL 189
                 K + L+ N +            ++++ L L  N     +           L HL
Sbjct: 119 GQG--KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHL 174

Query: 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDF 249
           +    NFI  +   +     KL  LD+S+N     +         +  + L  N      
Sbjct: 175 NL-QYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-- 228

Query: 250 STPFLTGCISLWFLDLSDNNFY-GQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKL 308
               L    +L   DL  N F+ G          +++ +  +  K      E       L
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 309 YQL 311
              
Sbjct: 289 GHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  102 bits (257), Expect = 4e-24
 Identities = 53/311 (17%), Positives = 104/311 (33%), Gaps = 22/311 (7%)

Query: 53  SLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTF 112
           ++     +    +   ++ ++ +     S   +   ++ L LS  N +  +   +  P  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSG-NPLSQISAADLAPFT 58

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
           +L++L L++  L            L+ LDL+ N +        L     +E L   NN+ 
Sbjct: 59  KLELLNLSSNVLYETLDL-ESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNI 111

Query: 173 TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG-NIPSSVGE 231
           +   R+  ++     ++  ++N  I  L         ++  LD+  N  +  N       
Sbjct: 112 S---RVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 232 MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL-NLTQMEFLYLE 290
              L  L+L  N                L  LDLS N     F   +  +   + ++ L 
Sbjct: 168 SDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLR 222

Query: 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLS-GHIPHWMGNFSNLEILLMSNNCLEGNIPVQ 349
           NNK    IE+ L  S  L   D+  N    G +  +      ++ +             +
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 350 LLNHRTLKLLS 360
                TL    
Sbjct: 282 ECTVPTLGHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 55/278 (19%), Positives = 102/278 (36%), Gaps = 29/278 (10%)

Query: 15  LANLTILQVLDLSG-----SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
             +   ++ LDLSG      S+  L   + L++L++S N L    +  + SL++L  LDL
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDL 87

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
           + N       +  L     +E L  ++ NN+  V           K + LAN  + ++  
Sbjct: 88  NNNY------VQELLVGPSIETLHAAN-NNISRVSCSRGQ---GKKNIYLANNKITMLRD 137

Query: 130 FLLHQYD-LKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFT---GNLRLPNTKHDF 185
                   ++YLDL LN +     + +  ++  LE L L  N      G +         
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK----- 192

Query: 186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNF 245
           L  LD SSN  +  +  +  +    +  + + NN     I  ++   + L    L  N F
Sbjct: 193 LKTLDLSSNK-LAFMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

Query: 246 SEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ 283
                  F +    +  +             ++  +  
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 45/261 (17%), Positives = 84/261 (32%), Gaps = 20/261 (7%)

Query: 12  LTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSY 71
              L +L+ L+ LDL+ +    L     ++ L  ++N +S     + +     + + L+ 
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLAN 129

Query: 72  NNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFL 131
           N              S+++ L L       +   E    +  L+ L L    +  V   +
Sbjct: 130 NKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 132 LHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNT--KHDFLHHL 189
           +    LK LDLS N L         Q+   +  + L NN       +         L H 
Sbjct: 189 VFAK-LKTLDLSSNKLA-FMGP-EFQSAAGVTWISLRNNKLV---LIEKALRFSQNLEHF 242

Query: 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDF 249
           D   N F     +D  +  +++  +          +     E   +  L        ED 
Sbjct: 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 250 STPFLTGCISLWFLDLSDNNF 270
             PF         + L  ++ 
Sbjct: 300 PAPFA-----DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 15/73 (20%), Positives = 28/73 (38%)

Query: 534 PSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSN 593
                +  + +   ++ + L  ++     +   ++ LDLS N LS    A L     L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 594 FNVSYNNLSGLIP 606
            N+S N L   + 
Sbjct: 63  LNLSSNVLYETLD 75

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 64/242 (26%), Positives = 96/242 (39%), Gaps = 18/242 (7%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFE-GPCPLSSLANHSKLEVLLLSS 96
           S    L++  N+L          LT L  L LS N      C   S    + L+ L LS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS- 86

Query: 97  TNNMLLVKTENFLPTFQLKVLELANCSLNVVP--TFLLHQYDLKYLDLSLNNLVGDFPSW 154
             N ++  + NFL   QL+ L+  + +L  +   +  L   +L YLD+S  +      + 
Sbjct: 87  -FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNG 144

Query: 155 MLQNNTKLEVLFLTNNSFTGNL------RLPNTKHDFLHHLDASSNNFIGTLPQDMGTIL 208
           +    + LEVL +  NSF  N        L N     L  LD S    +  L       L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-----LTFLDLSQCQ-LEQLSPTAFNSL 198

Query: 209 KKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDN 268
             L VL++S+N+F          +  L +L  S N+              SL FL+L+ N
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

Query: 269 NF 270
           +F
Sbjct: 259 DF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 19/256 (7%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP 252
           ++  + ++P     I      L++ +N  +        ++ +L  L LS N  S      
Sbjct: 15  NSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71

Query: 253 F-LTGCISLWFLDLSDNNFY---GQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TK 307
               G  SL +LDLS N        F    L L Q+E L  +++      E  +  S   
Sbjct: 72  QSDFGTTSLKYLDLSFNGVITMSSNF----LGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 308 LYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYL 366
           L  LDISH              S+LE+L M+ N  + N    +    R L  L +S+  L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 367 SGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQ- 423
                ++F +LSSL+ L +  N     +    ++  + L  LD   N++      Q  Q 
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQH 245

Query: 424 -LRRLGMMDLSHNRFN 438
               L  ++L+ N F 
Sbjct: 246 FPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 49/244 (20%), Positives = 80/244 (32%), Gaps = 18/244 (7%)

Query: 224 NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKD--LNL 281
            IPSS         L L  N         F      L  L LS N    +          
Sbjct: 25  GIPSS------ATRLELESNKLQSLPHGVF-DKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 282 TQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWM-GNFSNLEILLMSNN 340
           T +++L L  N     +    L   +L  LD  H+ L       +  +  NL  L +S+ 
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 341 CLEGNIPVQLLNH-RTLKLLSVSENYLSGSMTSSF--NLSSLKHLYVQKNALSGPIPDML 397
                    + N   +L++L ++ N    +        L +L  L + +  L   +    
Sbjct: 137 HTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTA 194

Query: 398 FRS-SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENV 456
           F S S L  L++  NN           L  L ++D S N    S      +    ++  +
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS-SLAFL 253

Query: 457 DLFG 460
           +L  
Sbjct: 254 NLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 8/166 (4%)

Query: 14  GLANLTILQVLDLSG------SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYL 67
               L  L+ LD         S  +    L +L  LDISH     + +     L+SLE L
Sbjct: 96  NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155

Query: 68  DLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVV 127
            ++ N+F+             L  L LS    +  +    F     L+VL +++ +   +
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 128 PTFLL-HQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
            TF       L+ LD SLN+++      +    + L  L LT N F
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 8e-15
 Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 18/181 (9%)

Query: 4   SLTNLYIFLTGLANLTILQVLDLSG----SSSNCLKYLSHLKVLDISHNQLSGSLS-STI 58
            L+            T L+ LDLS     + S+    L  L+ LD  H+ L      S  
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 59  TSLTSLEYLDLSYNNFEGPCPLSSLANH-----SKLEVLLLSSTNNMLLVKTENFLPTFQ 113
            SL +L YLD+S+ +           N      S LEVL ++  +       + F     
Sbjct: 123 LSLRNLIYLDISHTH------TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176

Query: 114 LKVLELANCSLNVVPTFLLH-QYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
           L  L+L+ C L  +     +    L+ L++S NN      ++  +    L+VL  + N  
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHI 235

Query: 173 T 173
            
Sbjct: 236 M 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 54/301 (17%), Positives = 104/301 (34%), Gaps = 56/301 (18%)

Query: 285 EFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE- 343
             +   +   +  +  G+ +S    +L++  N L           + L  L +S+N L  
Sbjct: 10  TEIRCNSKGLT-SVPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 344 -GNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS- 400
            G          +LK L +S N +  +M+S+F  L  L+HL  Q + L       +F S 
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 401 SKLMTLDLRGNNLEGQIPDQICQ-LRRLGMMDLSHNRFNGSIPS-CFTNMLQWTIENVDL 458
             L+ LD+   +      + I   L  L ++ ++ N F  +     FT +    +  +DL
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN--LTFLDL 182

Query: 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNY 518
              +L    P  F                                          ++L+ 
Sbjct: 183 SQCQLEQLSPTAF------------------------------------------NSLSS 200

Query: 519 MVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM-IESLDLSNNRL 577
           +  L++S N            L  ++ L+ S N +  S  +   +    +  L+L+ N  
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

Query: 578 S 578
           +
Sbjct: 261 A 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 514 SNLNYMVGLDLSCNELT--GNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLD 571
             L  +  L LS N L+  G           ++ L+LS N +  ++  +F  L+ +E LD
Sbjct: 49  DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107

Query: 572 LSNNRLSGQIPAQ--LIELNFLSNFNVSYNNLSGLIPD 607
             ++ L  Q+      + L  L   ++S+ +       
Sbjct: 108 FQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 37/205 (18%), Positives = 60/205 (29%), Gaps = 30/205 (14%)

Query: 405 TLDLRGNNLEGQIPDQI-CQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL 463
            +      L   +P  I     RL   +L  N+        F  + Q  +  + L    L
Sbjct: 11  EIRCNSKGLT-SVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQ--LTKLSLSSNGL 64

Query: 464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNG--SNLNYMVG 521
           S          GT     LDL                     N     +     L  +  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLS-------------------FNGVITMSSNFLGLEQLEH 105

Query: 522 LDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ 580
           LD   + L       +   L+ +  L++SH     +    F+ L  +E L ++ N     
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 581 IPAQ-LIELNFLSNFNVSYNNLSGL 604
                  EL  L+  ++S   L  L
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQL 190

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.6 bits (248), Expect = 6e-22
 Identities = 92/445 (20%), Positives = 164/445 (36%), Gaps = 59/445 (13%)

Query: 17  NLTILQVLDLSGSSSNCLKY--------LSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
            L+ L+VL LS    N ++            L+ LD+SHN+L  ++S     + SL +LD
Sbjct: 74  FLSELRVLRLS---HNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLD 127

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSST---------------NNMLLVKTENFLPTFQ 113
           LS+N+F+         N +KL  L LS+                + +LL      +   +
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187

Query: 114 LKVLELANCSL------------NVVPTFLLHQYDLKYLDLSLNNLVGDF---PSWMLQN 158
            + L++ N ++              V   +     L+  ++ LN+            L  
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 159 NTKLEVLFLTNNSFTGNLR---LPNTKHDFLHHLDASSNNFIG----TLPQDMGTILKKL 211
              L  + L +   T               + +L+  +                T LK L
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307

Query: 212 LVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFY 271
           ++  + N  F  +  +      E+ I  LS ++ +            S  FL+ + N F 
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 272 GQFFSKDLNLTQMEFLYLENNKFS--GKIEEGLLNSTKLYQLDISHNFL-SGHIPHWMGN 328
              F     L +++ L L+ N      K+     N + L  LD+S N L S         
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426

Query: 329 FSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNA 388
             ++ +L +S+N L G++   L     +K+L +  N +        +L +L+ L V  N 
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ 484

Query: 389 LSGPIPDMLFRS-SKLMTLDLRGNN 412
           L   +PD +F   + L  + L  N 
Sbjct: 485 LKS-VPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 3e-18
 Identities = 82/434 (18%), Positives = 152/434 (35%), Gaps = 51/434 (11%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
              K L +S N +S      I+ L+ L  L LS+N       + SL  H           
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR------IRSLDFHV---------- 95

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ 157
                     FL    L+ L++++  L  +    +    L++LDLS N+           
Sbjct: 96  ----------FLFNQDLEYLDVSHNRLQNISCCPMAS--LRHLDLSFNDFDVLPVCKEFG 143

Query: 158 NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQD-----MGTILKKLL 212
           N TKL  L L+   F    +L       LH      +     +               L 
Sbjct: 144 NLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

Query: 213 VLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTG---CISLWFLDLSDNN 269
           ++   N+ F   +  SV  +  L + ++  N+ +      FL+      +L  + L    
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 270 FYGQFFSKDLNL---TQMEFLYLENNKFSGKIEEGLLNSTK-----LYQLDISHNFLSGH 321
              +   K         +E+L + N   + +I+      ++     L    + +      
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320

Query: 322 IPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLK 380
                  F+ + I ++S +       V   +  +   L+ ++N  + S+      L  L+
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 381 HLYVQKNALS--GPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQL-RRLGMMDLSHNRF 437
            L +Q+N L     +  M    S L TLD+  N+L     D+ C     + +++LS N  
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 438 NGSIPSCFTNMLQW 451
            GS+  C    ++ 
Sbjct: 441 TGSVFRCLPPKVKV 454

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 88/443 (19%), Positives = 169/443 (38%), Gaps = 51/443 (11%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-GEMKELIILHLSKNNFSEDFST 251
           S N I  L     + L +L VL +S+N    ++   V    ++L  L +S N        
Sbjct: 60  SQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC 118

Query: 252 PFLTGCISLWFLDLSDNNF----YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTK 307
           P      SL  LDLS N+F      + F    NLT++ FL L   KF  +++   +    
Sbjct: 119 PMA----SLRHLDLSFNDFDVLPVCKEFG---NLTKLTFLGLSAAKFR-QLDLLPVAHLH 170

Query: 308 LY--QLDISHNFLSGHIPH--WMGNFSNLEILLMSNNCLEGNI-----PVQLLNHRTLKL 358
           L    LD+    + G       + N + L ++   N+     +      +  L    +KL
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 359 LSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS---SKLMTLDLRGNNLEG 415
              +   L   ++      +L ++ +Q    +      LF+      +  L++    +  
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 416 QIPDQI-----CQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLG 470
           +I  +        L+ L +  + +  F  S  + ++   +  I+ + +   +      + 
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI--SDTPFIHMVC 348

Query: 471 FC------YIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYE-LYNGS----NLNYM 519
                   ++    N   D         ++ ++++   + +N  +  +  +    N++ +
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVF---QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405

Query: 520 VGLDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS 578
             LD+S N L  +         + I  LNLS N L+GS+ R       ++ LDL NNR+ 
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463

Query: 579 GQIPAQLIELNFLSNFNVSYNNL 601
             IP  +  L  L   NV+ N L
Sbjct: 464 -SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 66/383 (17%), Positives = 126/383 (32%), Gaps = 40/383 (10%)

Query: 237 ILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL--NLTQMEFLYLENNKF 294
            L LS+N+ SE       +    L  L LS N    +     +      +E+L + +N+ 
Sbjct: 56  ALSLSQNSISELRMPDI-SFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 295 SGKIEEGLLNSTKLYQLDISHN-FLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH 353
              I    +    L  LD+S N F    +    GN + L  L +S       + +  + H
Sbjct: 113 Q-NISCCPM--ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAH 168

Query: 354 RTLK--LLSVSENYLSGSMTSSFNLSSLK--HLYVQKNALSGPIPDMLFRSSK---LMTL 406
             L   LL +   ++ G  T S  + +    HL    N+L     +M   +     L  +
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 407 DLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGS---IPSCFTNMLQWTIENVDLFGGEL 463
            L   N +  +       R   +++++      +       F       +E ++++   +
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 464 SIFPPLGFCYIGTYYNSTLDLE-VCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGL 522
           +                +L +E V  +    S + +   F   N                
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI--------------K 334

Query: 523 DLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS---- 578
            LS ++                 LN + N  + S+ +  S L+ +++L L  N L     
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 579 -GQIPAQLIELNFLSNFNVSYNN 600
              +   +  L  L     S N+
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNS 417

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 41/231 (17%), Positives = 77/231 (33%), Gaps = 23/231 (9%)

Query: 2   SGSLTNLYIFLTGLANLTILQV--LDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTIT 59
                      T L +L I  V       S        + + +  +S +           
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350

Query: 60  SLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLEL 119
           S +S  +L+ + N F         +   +L+ L+L    N L    +  L T  +  LE 
Sbjct: 351 SPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQ--RNGLKNFFKVALMTKNMSSLET 407

Query: 120 ANCSLNVVPTFLLHQY-----DLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFT- 173
            + SLN + +    +       +  L+LS N L G     +      ++VL L NN    
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK---VKVLDLHNNRIMS 464

Query: 174 ---GNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHF 221
                  L   +   +       +N + ++P  +   L  L  + + +N +
Sbjct: 465 IPKDVTHLQALQELNVA------SNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 43/281 (15%), Positives = 97/281 (34%), Gaps = 27/281 (9%)

Query: 355 TLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNN 412
             K LS+S+N +S         LS L+ L +  N +   +   +F     L  LD+  N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNR 111

Query: 413 LEGQIPDQICQLRRLGMMDLSHNRFNGSIPSC--FTNMLQWTIENVDLFGGELSIFPPLG 470
           L+      +  LR L   DLS N F+  +P C  F N+ +  +  + L   +      L 
Sbjct: 112 LQNISCCPMASLRHL---DLSFNDFD-VLPVCKEFGNLTK--LTFLGLSAAKFRQLDLLP 165

Query: 471 FCYIGTYY----NSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLN-------YM 519
             ++          +  ++  + +    P    +  V           N++        +
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225

Query: 520 VGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM-----IESLDLSN 574
             + L+       +       +    LN++   +  +   S    Q      +E L++ N
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285

Query: 575 NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFD 615
             ++ +I  +    +  +  ++   ++   +    + + + 
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.2 bits (247), Expect = 9e-22
 Identities = 68/341 (19%), Positives = 121/341 (35%), Gaps = 65/341 (19%)

Query: 277 KDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILL 336
           +         L +  +  +  + + L     +  L I  N L+  +P        L  L 
Sbjct: 35  RACLNNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLP---ALPPELRTLE 87

Query: 337 MSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDM 396
           +S N L  ++PV       L + S    +L          S L  L++  N L+  +P +
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL------PSGLCKLWIFGNQLTS-LPVL 139

Query: 397 LFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENV 456
                 L  L +  N L   +P    +L +L      +N+   S+P   + +     + +
Sbjct: 140 P---PGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSGL-----QEL 186

Query: 457 DLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMF-TSPQQVKVEFVTKNRYELYNGSN 515
            +   +L+  P L        Y   L     +       P  +K                
Sbjct: 187 SVSDNQLASLPTL----PSELYK--LWAYNNRLTSLPALPSGLKE--------------- 225

Query: 516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN 575
                 L +S N LT ++P    +L++   L +S N L+ S+P   S L    SL +  N
Sbjct: 226 ------LIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSGLL---SLSVYRN 271

Query: 576 RLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDE 616
           +L+ ++P  LI L+  +  N+  N LS       +  T   
Sbjct: 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP 311

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.0 bits (236), Expect = 2e-20
 Identities = 73/347 (21%), Positives = 120/347 (34%), Gaps = 45/347 (12%)

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
              VL +    L  +P  L     +  L +  NNL    P+       +L  L ++ N  
Sbjct: 41  GNAVLNVGESGLTTLPDCLPAH--ITTLVIPDNNLT-SLPALP----PELRTLEVSGNQL 93

Query: 173 TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM 232
           T    LP      L  L   SN     LP     +   L  L I  N    ++P     +
Sbjct: 94  T---SLPVLPPG-LLELSIFSNPLT-HLP----ALPSGLCKLWIFGNQLT-SLPVLPPGL 143

Query: 233 KELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENN 292
           +EL +      +     S         L  L   +N    Q  S  +  + ++ L + +N
Sbjct: 144 QELSVSDNQLASLPALPS--------ELCKLWAYNN----QLTSLPMLPSGLQELSVSDN 191

Query: 293 KFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN 352
           + +  +        KL+  +     L           S L+ L++S N L  ++PV    
Sbjct: 192 QLA-SLPTLPSELYKLWAYNNRLTSLPALP-------SGLKELIVSGNRLT-SLPVLPSE 242

Query: 353 HRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNN 412
              LK L VS N L+   +     S L  L V +N L+  +P+ L   S   T++L GN 
Sbjct: 243 ---LKELMVSGNRLT---SLPMLPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNP 295

Query: 413 LEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLF 459
           L  +    + ++           RF+ +  S         +   D  
Sbjct: 296 LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.4 bits (232), Expect = 6e-20
 Identities = 67/395 (16%), Positives = 128/395 (32%), Gaps = 79/395 (20%)

Query: 36  YLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSL-ANHSKLEVLLL 94
             +   VL++  + L+ +L   +     +  L +  NN      L+SL A   +L  L +
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNN------LTSLPALPPELRTLEV 88

Query: 95  SSTNNMLLVKTENFLPT--FQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFP 152
           S   N L       LP     L  L + +  L  +P        L  L +  N L    P
Sbjct: 89  S--GNQL-----TSLPVLPPGLLELSIFSNPLTHLPALPSG---LCKLWIFGNQL-TSLP 137

Query: 153 SWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLL 212
                    L+ L +++N       LP    + L  L A +N  + +LP         L 
Sbjct: 138 VLP----PGLQELSVSDNQLA---SLPALPSE-LCKLWAYNNQ-LTSLPMLPS----GLQ 184

Query: 213 VLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG 272
            L +S+N    ++P+   E+ +L   +    +                            
Sbjct: 185 ELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPA------------------------- 218

Query: 273 QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNL 332
                    + ++ L +  N+ +  +       ++L +L +S N L+  +P        L
Sbjct: 219 -------LPSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLT-SLPMLPS---GL 263

Query: 333 EILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGP 392
             L +  N L   +P  L++  +   +++  N LS     +    +    Y         
Sbjct: 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDM 322

Query: 393 IPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRL 427
                 R ++ + L    + L      +     R 
Sbjct: 323 AGASAPRETRALHLAAA-DWLVPAREGEPAPADRW 356

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.0 bits (231), Expect = 7e-20
 Identities = 63/344 (18%), Positives = 111/344 (32%), Gaps = 66/344 (19%)

Query: 18  LTILQVLDLSGSSSNCL-KYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEG 76
              +  L +  ++   L      L+ L++S NQL+ SL      L  L        +   
Sbjct: 60  PAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA 118

Query: 77  PCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYD 136
                                           LP+  L  L +    L  +P        
Sbjct: 119 --------------------------------LPS-GLCKLWIFGNQLTSLPVLPPG--- 142

Query: 137 LKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNF 196
           L+ L +S N L    P+      ++L  L+  NN  T    LP      L  L  S N  
Sbjct: 143 LQELSVSDNQL-ASLPALP----SELCKLWAYNNQLT---SLPMLP-SGLQELSVSDNQ- 192

Query: 197 IGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTG 256
           + +LP        +L  L   NN    ++P+    +KE   L +S N  +     P    
Sbjct: 193 LASLPTLPS----ELYKLWAYNNRLT-SLPALPSGLKE---LIVSGNRLTSLPVLP---- 240

Query: 257 CISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHN 316
              L  L +S N    +  S  +  + +  L +  N+ + ++ E L++ +    +++  N
Sbjct: 241 -SELKELMVSGN----RLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 317 FLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLS 360
            LS      +   ++           +          R L L +
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.2 bits (208), Expect = 4e-17
 Identities = 68/372 (18%), Positives = 115/372 (30%), Gaps = 95/372 (25%)

Query: 208 LKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCIS-LWFLDLS 266
                VL++  +     +P  +     +  L +  NN +       L      L  L++S
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS------LPALPPELRTLEVS 89

Query: 267 DNNFYGQFFSKDL-NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHW 325
            N             L ++                     + L +L I  N L+  +P  
Sbjct: 90  GNQL--TSLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPV- 138

Query: 326 MGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQ 385
                 L+ L +S+N L  ++P        L  L    N L+   +     S L+ L V 
Sbjct: 139 --LPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT---SLPMLPSGLQELSVS 189

Query: 386 KNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCF 445
            N L+  +P +    S+L  L    N L   +P     L+ L    +S NR   S+P   
Sbjct: 190 DNQLAS-LPTLP---SELYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLT-SLPVLP 240

Query: 446 TNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTK 505
           + +     + + + G  L+  P L                                    
Sbjct: 241 SEL-----KELMVSGNRLTSLPML----PS------------------------------ 261

Query: 506 NRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQ 565
                     L     L +  N+LT  +P  +  L     +NL  N LS    R+   L+
Sbjct: 262 ---------GLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---ERTLQALR 305

Query: 566 MIESLDLSNNRL 577
            I S    +  +
Sbjct: 306 EITSAPGYSGPI 317

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.8 bits (236), Expect = 8e-21
 Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 25/218 (11%)

Query: 15  LANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
             +L  L+VL L  +            L+ L  L++  N L+   S     L+ L  L L
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
             N  E   P  +      L  L L     +  +    F   F LK L L  C++  +P 
Sbjct: 155 RNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213

Query: 130 FLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNS--------FTGNLRLPNT 181
                  L+ L++S N+   +         + L+ L++ N+         F G   L + 
Sbjct: 214 L-TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG---LAS- 267

Query: 182 KHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNN 219
               L  L+ + NN + +LP D+ T L+ L+ L + +N
Sbjct: 268 ----LVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 47/239 (19%), Positives = 85/239 (35%), Gaps = 17/239 (7%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSL-----ANHSKLEVL 92
           S+ + L++  N +    + T   L  LE L L  N+      +  +        + L  L
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS------IRQIEVGAFNGLASLNTL 128

Query: 93  LLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDF 151
            L   N + ++ +  F    +L+ L L N  +  +P++  ++   L  LDL     +   
Sbjct: 129 ELFD-NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 152 PSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKL 211
                +    L+ L L   +      L       L  L+ S N+    +       L  L
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG--LEELEMSGNH-FPEIRPGSFHGLSSL 244

Query: 212 LVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF 270
             L + N+       ++   +  L+ L+L+ NN S        T    L  L L  N +
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.8 bits (197), Expect = 6e-16
 Identities = 69/311 (22%), Positives = 109/311 (35%), Gaps = 73/311 (23%)

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN-- 170
           Q   +      L+ VP  +    + +YL+L  NN+     +   ++   LEVL L  N  
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI 111

Query: 171 ------SFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGN 224
                 +F G   L +     L+ L+   N  +  +P      L KL  L + NN  E +
Sbjct: 112 RQIEVGAFNG---LAS-----LNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIE-S 161

Query: 225 IPSSV-GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ 283
           IPS     +  L+ L L +    E  S     G  +L +L+L   N   +       L  
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVG 219

Query: 284 MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE 343
           +E L +  N F  +I  G  +                         S+L+ L + N+   
Sbjct: 220 LEELEMSGNHFP-EIRPGSFH-----------------------GLSSLKKLWVMNS--- 252

Query: 344 GNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS-SK 402
                        ++  +  N   G       L+SL  L +  N LS  +P  LF     
Sbjct: 253 -------------QVSLIERNAFDG-------LASLVELNLAHNNLSS-LPHDLFTPLRY 291

Query: 403 LMTLDLRGNNL 413
           L+ L L  N  
Sbjct: 292 LVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 44/247 (17%), Positives = 81/247 (32%), Gaps = 34/247 (13%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP 252
           +   +  +PQ    I      L++  N+ +     +   +  L +L L +N+  +     
Sbjct: 62  TRRGLSEVPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ----- 113

Query: 253 FLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLL-NSTKLYQL 311
                       +    F G        L  +  L L +N  +  I  G     +KL +L
Sbjct: 114 ------------IEVGAFNG--------LASLNTLELFDNWLT-VIPSGAFEYLSKLREL 152

Query: 312 DISHNFLSGHIPHWMGNFSNLEIL-LMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGS 369
            + +N +     +      +L  L L     LE  I          LK L++    +   
Sbjct: 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-D 210

Query: 370 MTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM 429
           M +   L  L+ L +  N      P      S L  L +  + +     +    L  L  
Sbjct: 211 MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 430 MDLSHNR 436
           ++L+HN 
Sbjct: 271 LNLAHNN 277

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 59/302 (19%), Positives = 108/302 (35%), Gaps = 57/302 (18%)

Query: 305 STKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSEN 364
           S +  ++  +   LS  +P  +   SN   L +  N ++        +   L++L +  N
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 365 YLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQI- 421
            +      +F  L+SL  L +  N L+  IP   F   SKL  L LR N +E  IP    
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYAF 167

Query: 422 CQLRRLGMMDLSHNRFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNS 480
            ++  L  +DL   +    I    F  +    ++ ++L    +   P L           
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFN--LKYLNLGMCNIKDMPNL----------- 214

Query: 481 TLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDL 540
                                            + L  +  L++S N      P     L
Sbjct: 215 ---------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 541 QKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYN 599
             ++ L + ++ +S     +F  L  +  L+L++N LS  +P  L   L +L   ++ +N
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

Query: 600 NL 601
             
Sbjct: 301 PW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 16/166 (9%)

Query: 15  LANLTILQVLDLSGS------SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
              +  L  LDL         S    + L +LK L++    +   +   +T L  LE L+
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM-PNLTPLVGLEELE 224

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP 128
           +S N+F       S    S L+ L + + + + L++   F     L  L LA+ +L+ +P
Sbjct: 225 MSGNHFPEI-RPGSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHNNLSSLP 282

Query: 129 TFLLHQYD-LKYLDLSLNNLVGD-----FPSWMLQNNTKLEVLFLT 168
             L      L  L L  N    D        W+ +           
Sbjct: 283 HDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGR 328

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 53/235 (22%)

Query: 377 SSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQI-CQLRRLGMMDLSHN 435
           S+ ++L + +N +     D       L  L L  N++  QI       L  L  ++L  N
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133

Query: 436 RFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTS 494
                IPS  F  + +  +  + L    +   P   F                       
Sbjct: 134 WLT-VIPSGAFEYLSK--LRELWLRNNPIESIPSYAF----------------------- 167

Query: 495 PQQVKVEFVTKNRYELYNGSNLNYMVGLDLS-CNELTGNVPSEI-GDLQKIRGLNLSHNC 552
                              + +  ++ LDL    +L   +       L  ++ LNL    
Sbjct: 168 -------------------NRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCN 207

Query: 553 LSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
           +   +P + + L  +E L++S N      P     L+ L    V  + +S +  +
Sbjct: 208 IK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 54/209 (25%)

Query: 400 SSKLMTLDLRGNNLEGQIPDQI-CQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL 458
           S++   +      L  ++P  I    R L   +L  N         F ++    +E + L
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPSNTRYL---NLMENNIQMIQADTFRHLHH--LEVLQL 106

Query: 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNY 518
               +       F                                          + L  
Sbjct: 107 GRNSIRQIEVGAF------------------------------------------NGLAS 124

Query: 519 MVGLDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS-NNR 576
           +  L+L  N LT  +PS     L K+R L L +N +      +F+ +  +  LDL    +
Sbjct: 125 LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183

Query: 577 LSGQIPAQ-LIELNFLSNFNVSYNNLSGL 604
           L   I       L  L   N+   N+  +
Sbjct: 184 LE-YISEGAFEGLFNLKYLNLGMCNIKDM 211

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 80/409 (19%), Positives = 144/409 (35%), Gaps = 52/409 (12%)

Query: 15  LANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSY 71
              L  L  LD      +    ++ L+ L  L  + N ++   +  ++  T+L YL    
Sbjct: 38  EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLACDS 94

Query: 72  NNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFL 131
           N          +   +KL  L      N L     +      L  L  A  +L  +   +
Sbjct: 95  NKLTNL----DVTPLTKLTYLNCD--TNKL--TKLDVSQNPLLTYLNCARNTLTEID--V 144

Query: 132 LHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDA 191
            H   L  LD  LN  +       +   T+L  L  + N  T    L  +++  L+ L+ 
Sbjct: 145 SHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNC 198

Query: 192 SSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSE-DFS 250
            +NN I  L         +L  LD S+N     I   V  + +L     S N  +E D S
Sbjct: 199 DTNN-ITKLD---LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVS 251

Query: 251 TPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQ 310
                    L  L     +      +   + TQ+ +   E  +   +++  + ++T+LY 
Sbjct: 252 -----TLSKLTTLHCIQTDLLEIDLT---HNTQLIYFQAEGCRKIKELD--VTHNTQLYL 301

Query: 311 LDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM 370
           LD     ++  +   +     L  L ++N  L   + V       LK LS    ++    
Sbjct: 302 LDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELDVSHNTK--LKSLSCVNAHIQ-DF 354

Query: 371 TSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMT-----LDLRGNNLE 414
           +S   + +L + +  +        + L  +S  +      LD  GN + 
Sbjct: 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 69/408 (16%), Positives = 132/408 (32%), Gaps = 45/408 (11%)

Query: 20  ILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCP 79
           +    ++  + +   + L+ L  LD  ++ ++  ++  I  LT L  L  + NN      
Sbjct: 24  VAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNNITTL-- 79

Query: 80  LSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKY 139
              L+ ++ L  L     +N L     +  P  +L  L      L  +         L Y
Sbjct: 80  --DLSQNTNLTYLACD--SNKL--TNLDVTPLTKLTYLNCDTNKLTKLDVSQNPL--LTY 131

Query: 140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGT 199
           L+ + N L        + +NT+L  L    N     L +       L  LD S N  I  
Sbjct: 132 LNCARNTLT----EIDVSHNTQLTELDCHLNKKITKLDVTPQTQ--LTTLDCSFNK-ITE 184

Query: 200 LPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCIS 259
           L     +  K L  L+   N+    +   + +  +L  L  S N      +   +T    
Sbjct: 185 LD---VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNK----LTEIDVTPLTQ 234

Query: 260 LWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLS 319
           L + D S N            L+++  L+          E  L ++T+L           
Sbjct: 235 LTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRKI 288

Query: 320 GHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSL 379
             +   + + + L +L      +   + +       L  L ++   L+  +  S + + L
Sbjct: 289 KELD--VTHNTQLYLLDCQAAGIT-ELDLSQN--PKLVYLYLNNTELT-ELDVS-HNTKL 341

Query: 380 KHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRL 427
           K L      +       + +   L             +P +      L
Sbjct: 342 KSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTI-TMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.3 bits (183), Expect = 4e-14
 Identities = 61/429 (14%), Positives = 141/429 (32%), Gaps = 40/429 (9%)

Query: 208 LKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD 267
               +               S  ++  L  L    ++ +       +     L  L  + 
Sbjct: 20  FASEVAAAFEMQ---ATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTS 73

Query: 268 NNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMG 327
           NN      S     T + +L  ++NK +      +   TKL  L+   N L+  +   + 
Sbjct: 74  NNITTLDLS---QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLT-KLD--VS 124

Query: 328 NFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKN 387
               L  L  + N L     + + ++  L  L    N     +  +   + L  L    N
Sbjct: 125 QNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLDCSFN 180

Query: 388 ALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTN 447
            ++  +   + ++  L  L+   NN+  ++   + Q  +L  +D S N+      +  T 
Sbjct: 181 KITE-LD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQ 234

Query: 448 MLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNR 507
                +   D     L+         + T +    DL   + D+  + Q +  +     +
Sbjct: 235 -----LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLL--EIDLTHNTQLIYFQAEGCRK 287

Query: 508 YELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMI 567
            +  + ++   +  LD     +T     ++    K+  L L++  L+  +    S+   +
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKL 341

Query: 568 ESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCG 627
           +SL   N  +     + + ++  L+N   +      +  +    ++   +     L   G
Sbjct: 342 KSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

Query: 628 PTINKSCNS 636
             +N     
Sbjct: 400 NPMNIEPGD 408

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 53/314 (16%), Positives = 97/314 (30%), Gaps = 60/314 (19%)

Query: 12  LTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSY 71
           ++    LT L        +   +   + L  LD S N+++      ++    L  L+   
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDT 200

Query: 72  NNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFL 131
           NN         L  + +L  L  SS                +L  +++   +        
Sbjct: 201 NNITKL----DLNQNIQLTFLDCSSN---------------KLTEIDVTPLT-------- 233

Query: 132 LHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDA 191
                L Y D S+N L        +   +KL  L            +  T +  L +  A
Sbjct: 234 ----QLTYFDCSVNPLT----ELDVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQA 282

Query: 192 SSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSE-DFS 250
                I  L     T   +L +LD             + +  +L+ L+L+    +E D S
Sbjct: 283 EGCRKIKELDV---THNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELTELDVS 336

Query: 251 TPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLY- 309
                    L  L   + +   Q FS    +  +   +    +     +E L N++    
Sbjct: 337 -----HNTKLKSLSCVNAHI--QDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389

Query: 310 ----QLDISHNFLS 319
                LD   N ++
Sbjct: 390 VSPDLLDQFGNPMN 403

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 1e-20
 Identities = 50/218 (22%), Positives = 84/218 (38%), Gaps = 25/218 (11%)

Query: 15  LANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
             +L  L++L LS +            L++L  L++  N+L+   +     L+ L+ L L
Sbjct: 84  FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
             N  E   P  +      L  L L     +  +    F     L+ L LA C+L  +P 
Sbjct: 144 RNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202

Query: 130 FLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN--------SFTGNLRLPNT 181
                  L  LDLS N+L         Q    L+ L++  +        +F     L + 
Sbjct: 203 L-TPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN---LQS- 256

Query: 182 KHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNN 219
               L  ++ + NN +  LP D+ T L  L  + + +N
Sbjct: 257 ----LVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 7/234 (2%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
           ++ ++L++  NQ+     ++   L  LE L LS N+      + +    + L  L L   
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFD- 121

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDFPSWML 156
           N +  +    F+   +LK L L N  +  +P++  ++   L+ LDL     +        
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 157 QNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDI 216
           +  + L  L L   +      L       L  LD S N+ +  +       L  L  L +
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNLTPLIK--LDELDLSGNH-LSAIRPGSFQGLMHLQKLWM 238

Query: 217 SNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF 270
             +  +    ++   ++ L+ ++L+ NN +        T    L  + L  N +
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 6e-16
 Identities = 62/311 (19%), Positives = 101/311 (32%), Gaps = 73/311 (23%)

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN-- 170
           Q   +     +L  VP  +    + + L+L  N +         ++   LE+L L+ N  
Sbjct: 44  QFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI 100

Query: 171 ------SFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGN 224
                 +F G   L N     L+ L+   N  + T+P      L KL  L + NN  E +
Sbjct: 101 RTIEIGAFNG---LAN-----LNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIE-S 150

Query: 225 IPSSV-GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ 283
           IPS     +  L  L L +       S     G  +L +L+L+  N   +       L +
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIK 208

Query: 284 MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE 343
           ++ L L  N  S  I  G                             +L+ L M  +   
Sbjct: 209 LDELDLSGNHLS-AIRPGSFQ-----------------------GLMHLQKLWMIQS--- 241

Query: 344 GNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS-SK 402
                        ++  +  N           L SL  + +  N L+  +P  LF     
Sbjct: 242 -------------QIQVIERNAFDN-------LQSLVEINLAHNNLTL-LPHDLFTPLHH 280

Query: 403 LMTLDLRGNNL 413
           L  + L  N  
Sbjct: 281 LERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 63/251 (25%), Positives = 99/251 (39%), Gaps = 20/251 (7%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP 252
               +  +P     I     +L++  N  +    +S   ++ L IL LS+N+        
Sbjct: 51  VRKNLREVPDG---ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107

Query: 253 FLTGCISLWFLDLSDNNF----YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TK 307
           F  G  +L  L+L DN       G F      L++++ L+L NN     I     N    
Sbjct: 108 F-NGLANLNTLELFDNRLTTIPNGAFV----YLSKLKELWLRNNPIE-SIPSYAFNRIPS 161

Query: 308 LYQLDISHNFLSGHIPHWM-GNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYL 366
           L +LD+       +I        SNL  L ++   L   IP  L     L  L +S N+L
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219

Query: 367 SGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQL 424
           S     SF  L  L+ L++ ++ +   I    F +   L+ ++L  NNL     D    L
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278

Query: 425 RRLGMMDLSHN 435
             L  + L HN
Sbjct: 279 HHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 61/302 (20%), Positives = 112/302 (37%), Gaps = 57/302 (18%)

Query: 305 STKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSEN 364
           S +  ++      L   +P  +   +N  +L +  N ++        + R L++L +S N
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 365 YLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQI- 421
           ++      +F  L++L  L +  N L+  IP+  F   SKL  L LR N +E  IP    
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 422 CQLRRLGMMDLSHNRFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNS 480
            ++  L  +DL   +    I    F  +    +  ++L    L   P L           
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSN--LRYLNLAMCNLREIPNL----------- 203

Query: 481 TLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDL 540
                                            + L  +  LDLS N L+   P     L
Sbjct: 204 ---------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGL 230

Query: 541 QKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYN 599
             ++ L +  + +      +F NLQ +  ++L++N L+  +P  L   L+ L   ++ +N
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

Query: 600 NL 601
             
Sbjct: 290 PW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 48/218 (22%), Positives = 81/218 (37%), Gaps = 36/218 (16%)

Query: 259 SLWFLDLSDNNF---YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDIS 314
           +   L+L +N         F    +L  +E L L  N     IE G  N    L  L++ 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFK---HLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELF 120

Query: 315 HNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF 374
            N L+          S L+ L + NN +E +IP    N                      
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN---------------------- 157

Query: 375 NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLS 433
            + SL+ L + +      I +  F   S L  L+L   NL  +IP+ +  L +L  +DLS
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLS 215

Query: 434 HNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGF 471
            N  +   P  F  ++   ++ + +   ++ +     F
Sbjct: 216 GNHLSAIRPGSFQGLMH--LQKLWMIQSQIQVIERNAF 251

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 16/166 (9%)

Query: 15  LANLTILQVLDLSGS------SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
              +  L+ LDL         S    + LS+L+ L+++   L       +T L  L+ LD
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELD 213

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP 128
           LS N+        S      L+ L +   + + +++   F     L  + LA+ +L ++P
Sbjct: 214 LSGNHLSA-IRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271

Query: 129 TFLLHQYD-LKYLDLSLNNLVGD-----FPSWMLQNNTKLEVLFLT 168
             L      L+ + L  N    +        W+             
Sbjct: 272 HDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCAR 317

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 41/235 (17%), Positives = 76/235 (32%), Gaps = 53/235 (22%)

Query: 377 SSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQI-CQLRRLGMMDLSHN 435
           ++ + L + +N +     +       L  L L  N++   I       L  L  ++L  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 436 RFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTS 494
           R   +IP+  F  + +  ++ + L    +   P   F                       
Sbjct: 123 RLT-TIPNGAFVYLSK--LKELWLRNNPIESIPSYAF----------------------- 156

Query: 495 PQQVKVEFVTKNRYELYNGSNLNYMVGLDLS-CNELTGNVPSEI-GDLQKIRGLNLSHNC 552
                              + +  +  LDL     L+  +       L  +R LNL+   
Sbjct: 157 -------------------NRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCN 196

Query: 553 LSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
           L   IP + + L  ++ LDLS N LS   P     L  L    +  + +  +  +
Sbjct: 197 LR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 7   NLYIFLTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSL 61
                +  L  L  L  LDLSG+          + L HL+ L +  +Q+     +   +L
Sbjct: 195 CNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 62  TSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
            SL  ++L++NN     P         LE + L  
Sbjct: 255 QSLVEINLAHNNLTL-LPHDLFTPLHHLERIHLHH 288

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.5 bits (220), Expect = 3e-19
 Identities = 58/294 (19%), Positives = 95/294 (32%), Gaps = 50/294 (17%)

Query: 15  LANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
             NL  L  L L  +     S      L  L+ L +S NQL   L   +    +L+ L +
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRV 128

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNML---LVKTENFLPTFQLKVLELANCSLNV 126
             N        S     +++ V+ L    N L    ++   F    +L  + +A+ ++  
Sbjct: 129 HENEITK-VRKSVFNGLNQMIVVELG--TNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 127 VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFL 186
           +P  L     L  L L  N +     +  L+    L  L L                   
Sbjct: 186 IPQGLPPS--LTELHLDGNKI-TKVDAASLKGLNNLAKLGL------------------- 223

Query: 187 HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFS 246
                 S N I  +          L  L ++NN     +P  + + K + +++L  NN S
Sbjct: 224 ------SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

Query: 247 E----DFSTP-FLTGCISLWFLDLSDNNFYGQFFSKDL--NLTQMEFLYLENNK 293
                DF  P + T   S   + L  N              +     + L N K
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.7 bits (218), Expect = 5e-19
 Identities = 61/335 (18%), Positives = 119/335 (35%), Gaps = 47/335 (14%)

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
            L+V++ ++  L  VP  L    D   LDL  N +                   + +  F
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITE-----------------IKDGDF 72

Query: 173 TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM 232
                L N     LH L   +N  I  +       L KL  L +S N  +  +P  +   
Sbjct: 73  KN---LKN-----LHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--P 120

Query: 233 KELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL--NLTQMEFLYLE 290
           K L  L + +N  ++   + F  G   +  ++L  N              + ++ ++ + 
Sbjct: 121 KTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL 350
           +   +  I +GL  S  L +L +  N ++      +   +NL  L +S N +       L
Sbjct: 180 DTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 351 LNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS-------SKL 403
            N   L+ L ++ N L        +   ++ +Y+  N +S  I    F         +  
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASY 295

Query: 404 MTLDLRGNNLE-GQIPDQICQ-LRRLGMMDLSHNR 436
             + L  N ++  +I     + +     + L + +
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 7e-18
 Identities = 57/316 (18%), Positives = 109/316 (34%), Gaps = 71/316 (22%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
               +LD+ +N+++        +L +L  L L  N       +S ++  +          
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK------ISKISPGA---------- 95

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ 157
                     F P  +L+ L L+   L  +P  +     L+ L +  N +       +  
Sbjct: 96  ----------FAPLVKLERLYLSKNQLKELPEKMPKT--LQELRVHENEIT-KVRKSVFN 142

Query: 158 NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDIS 217
              ++ V+ L  N               L      +  F G         +KKL  + I+
Sbjct: 143 GLNQMIVVELGTNP--------------LKSSGIENGAFQG---------MKKLSYIRIA 179

Query: 218 NNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF----YGQ 273
           + +    IP  +     L  LHL  N  ++      L G  +L  L LS N+      G 
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 274 FFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSG------HIPHWMG 327
                 N   +  L+L NNK   K+  GL +   +  + + +N +S         P +  
Sbjct: 236 LA----NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290

Query: 328 NFSNLEILLMSNNCLE 343
             ++   + + +N ++
Sbjct: 291 KKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 63/336 (18%), Positives = 108/336 (32%), Gaps = 76/336 (22%)

Query: 259 SLWFLDLSDNNF----YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDI 313
               LDL +N       G F     NL  +  L L NNK S KI  G      KL +L +
Sbjct: 53  DTALLDLQNNKITEIKDGDF----KNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL 107

Query: 314 SHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSM-- 370
           S N L   +P        L+ L +  N +   +   + N    + ++ +  N L  S   
Sbjct: 108 SKNQLK-ELP--EKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 371 TSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ-LRRLG 428
             +F  +  L ++ +    ++  IP  L  S  L  L L GN +  ++     + L  L 
Sbjct: 164 NGAFQGMKKLSYIRIADTNITT-IPQGLPPS--LTELHLDGNKIT-KVDAASLKGLNNLA 219

Query: 429 MMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCK 488
            + LS N  +        N     +  + L   +L   P  G                  
Sbjct: 220 KLGLSFNSISAVDNGSLANTPH--LRELHLNNNKLVKVPG-GL----------------- 259

Query: 489 RDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG------NVPSEIGDLQK 542
                                    ++  Y+  + L  N ++         P        
Sbjct: 260 -------------------------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 543 IRGLNLSHNCLSGSI--PRSFSNLQMIESLDLSNNR 576
             G++L  N +      P +F  + +  ++ L N +
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 58/281 (20%)

Query: 329 FSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKN 387
             +  +L + NN +         N + L  L +  N +S     +F  L  L+ LY+ KN
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 388 ALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQI-CQLRRLGMMDLSHNRFNGSI--PSC 444
            L   +P+ + ++  L  L +  N +  ++   +   L ++ +++L  N    S      
Sbjct: 111 QLKE-LPEKMPKT--LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 445 FTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVT 504
           F  M +  +  + +    ++  P                       +  S  +       
Sbjct: 167 FQGMKK--LSYIRIADTNITTIPQ---------------------GLPPSLTE------- 196

Query: 505 KNRYELYNGSNLNYMVGLDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCLSGSIPRSFSN 563
                            L L  N++T  V +     L  +  L LS N +S     S +N
Sbjct: 197 -----------------LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 564 LQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
              +  L L+NN+L  ++P  L +  ++    +  NN+S +
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 48/298 (16%), Positives = 104/298 (34%), Gaps = 59/298 (19%)

Query: 285 EFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG 344
             +   +     K+ + L   T    LD+ +N ++        N  NL  L++ NN +  
Sbjct: 34  RVVQCSDLGLE-KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS- 89

Query: 345 NIPVQLLNH-RTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS-SK 402
            I          L+ L +S+N L           +L+ L V +N ++  +   +F   ++
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQ 146

Query: 403 LMTLDLRGNNL-EGQIPDQICQ-LRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFG 460
           ++ ++L  N L    I +   Q +++L  + ++             +     +  + L G
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS-----LTELHLDG 201

Query: 461 GELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMV 520
            +++                                                   LN + 
Sbjct: 202 NKITKVDAASL------------------------------------------KGLNNLA 219

Query: 521 GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS 578
            L LS N ++      + +   +R L+L++N L   +P   ++ + I+ + L NN +S
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 19/180 (10%)

Query: 4   SLTNLYIFLTGLANLTILQVLDLSGSSSNCLKYL-----SHLKVLDISHNQLSGSLSSTI 58
            L +  I       +  L  + ++      +  +       L  L +  N+++   ++++
Sbjct: 156 PLKSSGIENGAFQGMKKLSYIRIAD---TNITTIPQGLPPSLTELHLDGNKITKVDAASL 212

Query: 59  TSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLE 118
             L +L  L LS+N+        SLAN   L  L L+  NN L+           ++V+ 
Sbjct: 213 KGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLN--NNKLVKVPGGLADHKYIQVVY 269

Query: 119 LANCSLNVVP--TFLLHQYD-----LKYLDLSLNNL-VGDFPSWMLQNNTKLEVLFLTNN 170
           L N +++ +    F    Y+        + L  N +   +      +       + L N 
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 57/222 (25%)

Query: 378 SLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRF 437
            L+ +      L   +P  L        LDL+ N +          L+ L  + L +N+ 
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 438 NGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQ 497
           +   P  F  +++  +E + L   +L   P                       M  + Q+
Sbjct: 89  SKISPGAFAPLVK--LERLYLSKNQLKELPE---------------------KMPKTLQE 125

Query: 498 VKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCLSGS 556
                                   L +  NE+T  V   +   L ++  + L  N L  S
Sbjct: 126 ------------------------LRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 557 I--PRSFSNLQMIESLDLSNNRLSG---QIPAQLIELNFLSN 593
                +F  ++ +  + +++  ++     +P  L EL+   N
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.4 bits (217), Expect = 8e-19
 Identities = 58/291 (19%), Positives = 98/291 (33%), Gaps = 33/291 (11%)

Query: 21  LQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFE 75
             +LDL  +       +  K L HL  L + +N++S       + L  L+ L +S N+  
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-- 113

Query: 76  GPCPLSSLANH--SKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLN--VVPTFL 131
               L  +  +  S L  L +   N +  V    F     +  +E+    L         
Sbjct: 114 ----LVEIPPNLPSSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 132 LHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFT--GNLRLPNTKHDFLHHL 189
                L YL +S   L    P  + +    L  L L +N         L       L+ L
Sbjct: 169 FDGLKLNYLRISEAKLT-GIPKDLPET---LNELHLDHNKIQAIELEDLLRYSK--LYRL 222

Query: 190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSE-- 247
               N  I  +     + L  L  L + NN     +P+ + ++K L +++L  NN ++  
Sbjct: 223 GLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 248 --DFS-TPFLTGCISLWFLDLSDNNFYGQFFSKDL--NLTQMEFLYLENNK 293
             DF    F         + L +N              +T    +   N K
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.7 bits (210), Expect = 6e-18
 Identities = 62/336 (18%), Positives = 122/336 (36%), Gaps = 50/336 (14%)

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN-- 170
            L+V++ ++  L  VP  +    D   LDL  N++  +      +    L  L L NN  
Sbjct: 34  HLRVVQCSDLGLKAVPKEISP--DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 171 ------SFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGN 224
                 +F+    L       L  L  S N+ +  +P ++      L+ L I +N     
Sbjct: 91  SKIHEKAFSP---LRK-----LQKLYISKNH-LVEIPPNL---PSSLVELRIHDNRIR-K 137

Query: 225 IPSSV-GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ 283
           +P  V   ++ +  + +  N        P     + L +L +S+         KDL    
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL--TGIPKDL-PET 194

Query: 284 MEFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
           +  L+L++NK    IE   L   +KLY+L + HN +       +     L  L + NN L
Sbjct: 195 LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 343 EGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSK 402
              +P  L + + L+++ +  N ++                V  N        +  + + 
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNIT---------------KVGVNDFCPVGFGV--KRAY 295

Query: 403 LMTLDLRGNNLE-GQIPDQICQ-LRRLGMMDLSHNR 436
              + L  N +   ++     + +     +   + +
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 50/315 (15%), Positives = 97/315 (30%), Gaps = 50/315 (15%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
               +LD+ +N +S         L  L  L L  N       +S +   +          
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK------ISKIHEKA---------- 97

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ 157
                     F P  +L+ L ++   L  +P  L     L  L +  N +    P  +  
Sbjct: 98  ----------FSPLRKLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIR-KVPKGVFS 144

Query: 158 NNTKLEVLFLTNNSFTGNLRLPNTKHDF-LHHLDASSNNFIGTLPQDMGTILKKLLVLDI 216
               +  + +  N    +   P       L++L  S    +  +P+D+    + L  L +
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDL---PETLNELHL 200

Query: 217 SNNHFEGNIPSSV-GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFF 275
            +N  +  I         +L  L L  N          L+   +L  L L +N       
Sbjct: 201 DHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKL--SRV 256

Query: 276 SKDL-NLTQMEFLYLENNKFSGKIEEG-------LLNSTKLYQLDISHNFLSGHI--PHW 325
              L +L  ++ +YL  N  + K+           +       + + +N +      P  
Sbjct: 257 PAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 326 MGNFSNLEILLMSNN 340
               ++   +   N 
Sbjct: 316 FRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 54/306 (17%), Positives = 96/306 (31%), Gaps = 61/306 (19%)

Query: 282 TQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNC 341
                L L+NN  S   ++       LY L + +N +S            L+ L +S N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 342 LEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNAL-SGPIPDMLFR 399
           L   IP  L    +L  L + +N +       F  L ++  + +  N L +       F 
Sbjct: 114 LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 400 SSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPS-CFTNMLQWTIENVDL 458
             KL  L +    L   IP  +     L  + L HN+   +I         +  +  + L
Sbjct: 171 GLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSK--LYRLGL 224

Query: 459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNY 518
              ++ +                                                S L  
Sbjct: 225 GHNQIRMIENGSL------------------------------------------SFLPT 242

Query: 519 MVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM------IESLDL 572
           +  L L  N+L+  VP+ + DL+ ++ + L  N ++      F  +           + L
Sbjct: 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301

Query: 573 SNNRLS 578
            NN + 
Sbjct: 302 FNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 66/336 (19%), Positives = 112/336 (33%), Gaps = 77/336 (22%)

Query: 259 SLWFLDLSDNNF----YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDI 313
               LDL +N+        F      L  +  L L NNK S KI E   +   KL +L I
Sbjct: 55  DTTLLDLQNNDISELRKDDF----KGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYI 109

Query: 314 SHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSM-- 370
           S N L   IP      S+L  L + +N +   +P  + +  R +  + +  N L  S   
Sbjct: 110 SKNHLV-EIP--PNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 371 TSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ-LRRLGM 429
             +F+   L +L + +  L+G IP  L  +  L  L L  N ++  I  +      +L  
Sbjct: 166 PGAFDGLKLNYLRISEAKLTG-IPKDLPET--LNELHLDHNKIQ-AIELEDLLRYSKLYR 221

Query: 430 MDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKR 489
           + L HN+         + +    +  + L   +LS  P  G                   
Sbjct: 222 LGLGHNQIRMIENGSLSFLPT--LRELHLDNNKLSRVPA-GL------------------ 260

Query: 490 DMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEI-------GDLQK 542
                                    +L  +  + L  N +T  V                
Sbjct: 261 ------------------------PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAY 295

Query: 543 IRGLNLSHNCLSGSI--PRSFSNLQMIESLDLSNNR 576
             G++L +N +      P +F  +    ++   N +
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 58/281 (20%), Positives = 98/281 (34%), Gaps = 59/281 (20%)

Query: 329 FSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKN 387
             +  +L + NN +           + L  L +  N +S     +F  L  L+ LY+ KN
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 388 ALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ-LRRLGMMDLSHNRFNGSI--PSC 444
            L   IP  L  S  L+ L +  N +  ++P  +   LR +  +++  N    S   P  
Sbjct: 113 HLVE-IPPNLPSS--LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 445 FTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVT 504
           F  +    +  + +   +L+  P                                     
Sbjct: 169 FDGL---KLNYLRISEAKLTGIPKDLP--------------------------------- 192

Query: 505 KNRYELYNGSNLNYMVGLDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCLSGSIPRSFSN 563
                      LN    L L  N++   +  E      K+  L L HN +      S S 
Sbjct: 193 ---------ETLNE---LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 564 LQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
           L  +  L L NN+LS ++PA L +L  L    +  NN++ +
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 15  LANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
           L   + L  L L  +      +  L +L  L+ L + +N+LS  + + +  L  L+ + L
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271

Query: 70  SYNNFE-----GPCPLSSLANHSKLEVLLLSSTN-NMLLVKTENFLPTFQLKVLELAN 121
             NN         CP+      +    + L +       V+   F        ++  N
Sbjct: 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 87.7 bits (218), Expect = 2e-18
 Identities = 81/462 (17%), Positives = 143/462 (30%), Gaps = 96/462 (20%)

Query: 21  LQVLDLSGSS------SNCLKYLSHLKVLDISHNQLS----GSLSSTITSLTSLEYLDLS 70
           +Q LD+          +  L  L   +V+ +    L+      +SS +    +L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 71  YNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSL-----N 125
            N   G   +  +          L + +              +++ L L NC L      
Sbjct: 65  SNEL-GDVGVHCVLQG-------LQTPSC-------------KIQKLSLQNCCLTGAGCG 103

Query: 126 VVPTFLLHQYDLKYLDLSLNNL----VGDFPSWMLQNNTKLEVLFLTNNSFTGN------ 175
           V+ + L     L+ L LS N L    +      +L    +LE L L   S +        
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 176 LRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILK----KLLVLDISNNHFE----GNIPS 227
             L          L  S+N+      + +   LK    +L  L + +         ++  
Sbjct: 164 SVLRAKPD--FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 228 SVGEMKELIILHLSKNNFSED----FSTPFLTGCISLWFLDLSDNNF---YGQFFSKDL- 279
            V     L  L L  N   +          L     L  L + +            + L 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 280 NLTQMEFLYLENNKFSGK----IEEGLLN-STKLYQLDISHNFLSG----HIPHWMGNFS 330
               ++ L L  N+   +    + E LL    +L  L +     +     H    +    
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 331 NLEILLMSNNCLEGNIPVQLL------NHRTLKLLSVSEN--------YLSGSMTSSFNL 376
            L  L +SNN L  +  V+ L          L++L +++          L+ ++ ++   
Sbjct: 342 FLLELQISNNRL-EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN--- 397

Query: 377 SSLKHLYVQKNALSGPIPDMLFRS-----SKLMTLDLRGNNL 413
            SL+ L +  N L       L  S       L  L L     
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 3e-15
 Identities = 72/371 (19%), Positives = 125/371 (33%), Gaps = 77/371 (20%)

Query: 15  LANLTILQVLDLSGSS---------SNCLKYLS-HLKVLDISHNQLS----GSLSSTITS 60
           L     L  L+L  +             L+  S  ++ L + +  L+    G LSST+ +
Sbjct: 52  LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 61  LTSLEYLDLSYNNF--EGPCPLSS--LANHSKLEVLLLSSTN----------NMLLVKTE 106
           L +L+ L LS N     G   L    L    +LE L L   +          ++L  K  
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP- 170

Query: 107 NFLPTFQLKVLELANCSLNVVPTFLL------HQYDLKYLDLSLNNL----VGDFPSWML 156
                   K L ++N  +N     +L          L+ L L    +      D    ++
Sbjct: 171 ------DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL-CGIV 223

Query: 157 QNNTKLEVLFLTNNSFTGN--------LRLPNTKHDFLHHLDASSNNFIGTLPQDMGTIL 208
            +   L  L L +N             L  P+++   L  L             D+  +L
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSR---LRTLWIWECGITAKGCGDLCRVL 280

Query: 209 KK---LLVLDISNNHFEGNIPSSVGEM-----KELIILHLSKNNFSEDFSTPF---LTGC 257
           +    L  L ++ N         + E       +L  L +   +F+    + F   L   
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 258 ISLWFLDLSDNNFYG---QFFSKDL--NLTQMEFLYLENNKFSGK----IEEGLLNSTKL 308
             L  L +S+N       +   + L    + +  L+L +   S      +   LL +  L
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400

Query: 309 YQLDISHNFLS 319
            +LD+S+N L 
Sbjct: 401 RELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.8 bits (182), Expect = 5e-14
 Identities = 74/456 (16%), Positives = 130/456 (28%), Gaps = 97/456 (21%)

Query: 62  TSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTN----------NMLLVKTENFLPT 111
             ++ LD+             L    + +V+ L              + L V        
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP------ 56

Query: 112 FQLKVLELANCSLN------VVPTFLLHQYDLKYLDLSLNNL----VGDFPSWMLQNNTK 161
             L  L L +  L       V+         ++ L L    L     G   S  L+    
Sbjct: 57  -ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPT 114

Query: 162 LEVLFLTNNSFTGN--------LRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKK--- 210
           L+ L L++N             L  P  +   L  L     +      + + ++L+    
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCR---LEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 211 LLVLDISNNHFEGNIPSSVGEMKE-----LIILHLSKNNFSEDFSTPF---LTGCISLWF 262
              L +SNN         + +  +     L  L L     + D        +    SL  
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 263 LDLSDNNFYGQFFSKDL------NLTQMEFLYLENNKFSGK----IEEGLLNSTKLYQLD 312
           L L  N   G     +L        +++  L++     + K    +   L     L +L 
Sbjct: 232 LALGSNKL-GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290

Query: 313 ISHN--------FLSGHIPHWMGNFSNLEILLMSNNCLEG----NIPVQLLNHRTLKLLS 360
           ++ N         L   +         LE L + +         +    L  +R L  L 
Sbjct: 291 LAGNELGDEGARLLCETLLE---PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 361 VSENYLSGSMTSSF------NLSSLKHLYVQKNALS----GPIPDMLFRSSKLMTLDLRG 410
           +S N L  +             S L+ L++    +S      +   L  +  L  LDL  
Sbjct: 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407

Query: 411 NNLEGQ--------IPDQICQLRRLGMMDLSHNRFN 438
           N L           +    C L +L    L    ++
Sbjct: 408 NCLGDAGILQLVESVRQPGCLLEQL---VLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 56/288 (19%), Positives = 83/288 (28%), Gaps = 63/288 (21%)

Query: 14  GLANLTILQVLDLSGSS---------SNCLKY-LSHLKVLDISHNQLS----GSLSSTIT 59
            L      + L +S +             LK     L+ L +    ++      L   + 
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 60  SLTSLEYLDLSYNNF--EGPCPLSS--LANHSKLEVLLLSSTN----------NMLLVKT 105
           S  SL  L L  N     G   L    L   S+L  L +               +L  K 
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 106 ENFLPTFQLKVLELANCSL------NVVPTFLLHQYDLKYLDLSLNNLVGD---FPSWML 156
                   LK L LA   L       +  T L     L+ L +   +         S +L
Sbjct: 285 -------SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 157 QNNTKLEVLFLTNNSFTGN--------LRLPNTKHDFLHHLDASSNNFIGTLPQDMGTIL 208
             N  L  L ++NN             L  P +    L  L  +  +   +    +   L
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV---LRVLWLADCDVSDSSCSSLAATL 394

Query: 209 KK---LLVLDISNNHFEGNIPSSVGEMKE-----LIILHLSKNNFSED 248
                L  LD+SNN         + E        L  L L    +SE+
Sbjct: 395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 50/264 (18%), Positives = 100/264 (37%), Gaps = 27/264 (10%)

Query: 15  LANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
           L     LQ L L+ +       +    L  L+ LD+S+N LS   SS    L+SL +L+L
Sbjct: 72  LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131

Query: 70  SYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
             N ++     S  ++ +KL++L + + +    ++ ++F     L+ LE+    L     
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191

Query: 130 FLLHQ-YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGN--LRLPN------ 180
             L    ++ +L L +   +       +   + +E L L +          L        
Sbjct: 192 KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 181 TKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-GEMKELIILH 239
            K     ++  +  +    +       +  LL L+ S N  + ++P  +   +  L  + 
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQ--ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW 307

Query: 240 LSKNNFSEDFSTPFLTGCISLWFL 263
           L  N        P+   C  + +L
Sbjct: 308 LHTN--------PWDCSCPRIDYL 323

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 47/293 (16%)

Query: 136 DLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN--------SFTGNLRLPNTKHDFLH 187
            +K LDLS N +     +  LQ    L+ L LT+N        SF+    L +     L 
Sbjct: 53  AVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS---LGS-----LE 103

Query: 188 HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-GEMKELIILHLSKNNFS 246
           HLD S N  +  L       L  L  L++  N ++    +S+   + +L IL +   +  
Sbjct: 104 HLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 247 EDFSTPFLTGCISLWFLDLSDNNF----YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGL 302
                    G   L  L++  ++              ++  +  L L   +    + E  
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSL----KSIQNVSHLILHMKQHI-LLLEIF 217

Query: 303 L-NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV 361
           +  ++ +  L++    L         +FS L     ++          L+   T + + +
Sbjct: 218 VDVTSSVECLELRDTDLDTF------HFSELSTGETNS----------LIKKFTFRNVKI 261

Query: 362 SENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNL 413
           ++  L   M     +S L  L   +N L   +PD +F   + L  + L  N  
Sbjct: 262 TDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 9e-14
 Identities = 52/306 (16%), Positives = 107/306 (34%), Gaps = 58/306 (18%)

Query: 21  LQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFE 75
           ++ LDLS +     S++ L+   +L+ L ++ N ++     + +SL SLE+LDLSYN   
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 76  GPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSL--NVVPTFLLH 133
                S     S L  L L       L +T  F    +L++L + N      +       
Sbjct: 114 N-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 134 QYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASS 193
              L+ L++  ++L   +    L++   +  L L                          
Sbjct: 173 LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-------------------- 211

Query: 194 NNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPF 253
                 L +    +   +  L++ +                     L   +FSE  +   
Sbjct: 212 -----LLLEIFVDVTSSVECLELRDT-------------------DLDTFHFSELSTGET 247

Query: 254 --LTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQ 310
             L    +   + ++D + + Q       ++ +  L    N+    + +G+ +  T L +
Sbjct: 248 NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQK 305

Query: 311 LDISHN 316
           + +  N
Sbjct: 306 IWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 52/276 (18%), Positives = 101/276 (36%), Gaps = 20/276 (7%)

Query: 305 STKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSE 363
           +  +  LD+S+N ++      +    NL+ L++++N +   I     +   +L+ L +S 
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 364 NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQI 421
           NYLS   +S F  LSSL  L +  N         LF   +KL  L +   +   +I  + 
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 422 -CQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNS 480
              L  L  +++  +      P    ++    + ++ L   +  +   +      T    
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSI--QNVSHLILHMKQHILLLEIFVD--VTSSVE 225

Query: 481 TLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDL 540
            L+L     D F   +    E          +         + ++   L   V   +  +
Sbjct: 226 CLELRDTDLDTFHFSELSTGET--------NSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 541 QKIRGLNLSHNCLSGSIPRS-FSNLQMIESLDLSNN 575
             +  L  S N L  S+P   F  L  ++ + L  N
Sbjct: 277 SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 9/169 (5%)

Query: 12  LTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSY 71
           LT L  L +  +   +         L+ L+ L+I  + L      ++ S+ ++ +L L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 72  NNFEGPCPLSSLANHSKLEVLLLSST-------NNMLLVKTENFLPTFQLKVLELANCSL 124
                      +   S +E L L  T       + +   +T + +  F  + +++ + SL
Sbjct: 208 KQHILL-LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

Query: 125 NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFT 173
             V   L     L  L+ S N L    P  +    T L+ ++L  N + 
Sbjct: 267 FQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 38/264 (14%), Positives = 78/264 (29%), Gaps = 57/264 (21%)

Query: 355 TLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNN 412
            +K L +S N ++    S      +L+ L +  N ++  I +  F S   L  LDL  N 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNY 111

Query: 413 LEGQIPDQICQ-LRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGF 471
           L   +     + L  L  ++L  N +     +   + L              +      F
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 472 CYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG 531
                                                     + L ++  L++  ++L  
Sbjct: 171 ------------------------------------------AGLTFLEELEIDASDLQS 188

Query: 532 NVPSEIGDLQKIRGLNLSHNCLSGSIPR-SFSNLQMIESLDLSNNRLSG----QIPA--- 583
             P  +  +Q +  L L        +          +E L+L +  L      ++     
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

Query: 584 -QLIELNFLSNFNVSYNNLSGLIP 606
             LI+     N  ++  +L  ++ 
Sbjct: 248 NSLIKKFTFRNVKITDESLFQVMK 271

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 8e-04
 Identities = 32/231 (13%), Positives = 67/231 (29%), Gaps = 48/231 (20%)

Query: 377 SSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR 436
            ++K L +  N ++      L R   L  L L  N +     D    L  L  +DLS+N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 437 FNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP 495
              ++ S  F  +    +  ++L G                                   
Sbjct: 112 L-SNLSSSWFKPLSS--LTFLNLLGNPYKTLGETSL------------------------ 144

Query: 496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCLS 554
                             S+L  +  L +   +    +  +    L  +  L +  + L 
Sbjct: 145 -----------------FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 555 GSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGL 604
              P+S  ++Q +  L L   +    +    ++  + +    +   +L   
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 83.5 bits (206), Expect = 7e-17
 Identities = 50/306 (16%), Positives = 99/306 (32%), Gaps = 52/306 (16%)

Query: 326 MGNFSNLEILLMSNN--CLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLY 383
           + N  +L      N       +            L   + N     +     ++    L 
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-INQFSELQ 65

Query: 384 VQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPS 443
           + +  LS  +PD L    ++  L++  N L   +P+    L  L   D   NR + ++P 
Sbjct: 66  LNRLNLSS-LPDNLP--PQITVLEITQNALI-SLPELPASLEYL---DACDNRLS-TLPE 117

Query: 444 CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFV 503
              ++     +++D+   +L++ P L                         P  ++    
Sbjct: 118 LPASL-----KHLDVDNNQLTMLPEL-------------------------PALLEYINA 147

Query: 504 TKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSN 563
             N+  +        +  L +  N+LT  +P     L+    L++S N L  S+P     
Sbjct: 148 DNNQLTMLP-ELPTSLEVLSVRNNQLTF-LPELPESLEA---LDVSTNLLE-SLPAVPVR 201

Query: 564 LQ----MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSY 619
                          NR++  IP  ++ L+      +  N LS  I +     T     +
Sbjct: 202 NHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 620 RGNLYL 625
              +Y 
Sbjct: 261 GPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 53/313 (16%), Positives = 105/313 (33%), Gaps = 48/313 (15%)

Query: 140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL-RLPNTKHDFLHHLDASSNNFIG 198
            +   N + G +         K E   L   +    +  L     +    L  +  N + 
Sbjct: 15  QNSFYNTISGTYAD-YFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-LS 72

Query: 199 TLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCI 258
           +LP +   +  ++ VL+I+ N    ++P     ++ L       +   E  +        
Sbjct: 73  SLPDN---LPPQITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPELPA-------- 120

Query: 259 SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFL 318
           SL  LD+ +N    Q          +E++  +NN+ +  + E     T L  L + +N L
Sbjct: 121 SLKHLDVDNN----QLTMLPELPALLEYINADNNQLT-MLPELP---TSLEVLSVRNNQL 172

Query: 319 SGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSS 378
           +  +P    +   LE L +S N LE ++P   + +   +                     
Sbjct: 173 T-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEET------------------- 208

Query: 379 LKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN 438
                 ++N ++  IP+ +       T+ L  N L  +I + + Q             F+
Sbjct: 209 EIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

Query: 439 GSIPSCFTNMLQW 451
            S     T     
Sbjct: 268 MSDGQQNTLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.9 bits (194), Expect = 2e-15
 Identities = 60/317 (18%), Positives = 91/317 (28%), Gaps = 62/317 (19%)

Query: 16  ANLTILQVLDLSGSSSNCLKYL-----SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLS 70
             +     L L+      L  L       + VL+I+ N L  SL        SLEYLD  
Sbjct: 56  CLINQFSELQLNR---LNLSSLPDNLPPQITVLEITQNALI-SLPE---LPASLEYLDAC 108

Query: 71  YNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTF 130
            N               +L  L     +               LK L++ N  L ++P  
Sbjct: 109 DN---------------RLSTLPELPAS---------------LKHLDVDNNQLTMLPEL 138

Query: 131 LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLD 190
                 L+Y++   N L    P       T LEVL + NN  T    LP      L  LD
Sbjct: 139 PAL---LEYINADNNQLT-MLPELP----TSLEVLSVRNNQLT---FLPELPES-LEALD 186

Query: 191 ASSNNFIGTLPQDMGTI---LKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSE 247
             S N + +LP          +  +      N    +IP ++  +     + L  N  S 
Sbjct: 187 V-STNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244

Query: 248 DFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTK 307
                  +        D      Y        N             F    +  +     
Sbjct: 245 R---IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWH 301

Query: 308 LYQLDISHNFLSGHIPH 324
            ++ +   N  S  +  
Sbjct: 302 AFEHEEHANTFSAFLDR 318

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.1 bits (192), Expect = 4e-15
 Identities = 60/317 (18%), Positives = 103/317 (32%), Gaps = 54/317 (17%)

Query: 43  LDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLL 102
            +  +N +SG+ +   ++    E   L   N                        N  + 
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENR-----------------------NEAVS 51

Query: 103 VKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKL 162
           +  E  +   Q   L+L   +L+ +P  L  Q  +  L+++ N L+   P         L
Sbjct: 52  LLKECLIN--QFSELQLNRLNLSSLPDNLPPQ--ITVLEITQNALI-SLPELP----ASL 102

Query: 163 EVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE 222
           E L   +N  +    LP      L HLD  +N     LP+        L  ++  NN   
Sbjct: 103 EYLDACDNRLS---TLPELPAS-LKHLDVDNNQLT-MLPELPA----LLEYINADNNQLT 153

Query: 223 GNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG--QFFSKDLN 280
             +P        L +L +  N  +     P      SL  LD+S N          ++ +
Sbjct: 154 -MLPEL---PTSLEVLSVRNNQLTFLPELPE-----SLEALDVSTNLLESLPAVPVRNHH 204

Query: 281 LTQME-FLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSN 339
             + E F     N+ +  I E +L+      + +  N LS  I   +   +         
Sbjct: 205 SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 340 NCLEGNIPVQLLNHRTL 356
                +   Q   HR L
Sbjct: 264 IYFSMSDGQQNTLHRPL 280

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.0 bits (200), Expect = 1e-16
 Identities = 46/236 (19%), Positives = 84/236 (35%), Gaps = 14/236 (5%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
            +   L     +L        +    LE +++S N+          +N  KL  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFL-LHQYDLKYLDLSLNNLVGDFPSWML 156
           NN+L +  E F     L+ L ++N  +  +P    +H      LD+  N  +        
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 157 QN-NTKLEVLFLTNNSFTGNLRLPNT--KHDFLHHLDASSNNFIGTLPQDMGTILKKLLV 213
              + +  +L+L  N       + N+      L  L+ S NN +  LP D+       ++
Sbjct: 150 VGLSFESVILWLNKNGIQ---EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 214 LDISNNHFEGNIPSSV-GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDN 268
           LDIS      ++PS     +K+L                P L   ++L    L+  
Sbjct: 207 LDISRTRIH-SLPSYGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 37/213 (17%), Positives = 81/213 (38%), Gaps = 14/213 (6%)

Query: 15  LANLTILQVLDLSGS------SSNCLKYLSHLKVLDISH-NQLSGSLSSTITSLTSLEYL 67
            +    L+ +++S +       ++    L  L  + I   N L         +L +L+YL
Sbjct: 50  FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 68  DLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLP-TFQLKVLELANCSLNV 126
            +S    +   P     +  +  +L +    N+  ++  +F+  +F+  +L L    +  
Sbjct: 110 LISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168

Query: 127 VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFL 186
           +     +   L  L+LS NN + + P+ +    +   +L ++         LP+   + L
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH---SLPSYGLENL 225

Query: 187 HHLDASSNNFIGTLPQDMGTILKKLLVLDISNN 219
             L A S   +  LP      L  L+   ++  
Sbjct: 226 KKLRARSTYNLKKLPTL--EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.5 bits (139), Expect = 5e-09
 Identities = 44/242 (18%), Positives = 77/242 (31%), Gaps = 30/242 (12%)

Query: 114 LKVLELANCSLNVVPTFLLHQY-DLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN-- 170
              L      L V+       + DL+ +++S N+++    + +  N  KL  + +     
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 171 -------SFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG 223
                  +F     LPN     L +L  S+   I  LP        + ++LDI +N    
Sbjct: 92  LLYINPEAFQN---LPN-----LQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 224 NIPSSV--GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL-- 279
            I  +   G   E +IL L+KN   E        G          +NN   +    D+  
Sbjct: 143 TIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNL--EELPNDVFH 199

Query: 280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSN 339
             +    L +   +       GL N  KL      +          +     L    ++ 
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL----KKLPTLEKLVALMEASLTY 255

Query: 340 NC 341
             
Sbjct: 256 PS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 21/236 (8%)

Query: 354 RTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGN 411
           R    L      L      +F     L+ + + +N +   I   +F +  KL  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 412 NLEGQIPDQICQ-LRRLGMMDLSHNRFNGSIPS-CFTNMLQWTIENVDLFG-GELSIFPP 468
           N    I  +  Q L  L  + +S+      +P     + LQ     +D+     +     
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQ--KVLLDIQDNINIHTIER 146

Query: 469 LGFCYIGTYYNSTLDLEVCK-----RDMFTSPQQVKVEFVTKNR-YELYNG--SNLNYMV 520
             F  + ++ +  L L            F   Q  ++     N   EL N      +  V
Sbjct: 147 NSFVGL-SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 521 GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNR 576
            LD+S   +       + +L+K+R  +  +      +P +   L  +    L+   
Sbjct: 206 ILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 35/232 (15%), Positives = 67/232 (28%), Gaps = 39/232 (16%)

Query: 377 SSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQI-CQLRRLGMMDLSH 434
            +   L      L   I    F     L  +++  N++   I   +   L +L  + +  
Sbjct: 30  RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 435 NRFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDL------EVC 487
                 I    F N+    ++ + +    +   P +   +        LD+         
Sbjct: 89  ANNLLYINPEAFQNLPN--LQYLLISNTGIKHLPDVHKIHSLQ--KVLLDIQDNINIHTI 144

Query: 488 KRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLN 547
           +R+ F                             L L+ N +   + +   +  ++  LN
Sbjct: 145 ERNSFVGLS-----------------FESVI---LWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 548 LSH-NCLSGSIPRSFSNLQMIESLDLSNNRLS---GQIPAQLIELNFLSNFN 595
           LS  N L       F        LD+S  R+          L +L   S +N
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 1e-16
 Identities = 58/290 (20%), Positives = 97/290 (33%), Gaps = 21/290 (7%)

Query: 119 LANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL-- 176
             NC              L+YL   ++          +  +  L+ L +        +  
Sbjct: 27  AFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86

Query: 177 -RLPNTKHDFLHHLDASSNNFIGTLP-QDMGTILKKLLVLDISNNHFEGNIPSSVGEMKE 234
             L       L  L   +    GT P   +      L +L++ N  +     + + E+++
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ 145

Query: 235 LIILHLSK----NNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSK----DLNLTQMEF 286
            +   L         S +FS   +    +L  LDLSDN   G+         L    ++ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 287 LYLENNKF---SGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNF-SNLEILLMSNNCL 342
           L L N      SG          +L  LD+SHN L         ++ S L  L +S   L
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 343 EGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGP 392
           +  +P  L     L +L +S N L     S   L  + +L ++ N     
Sbjct: 266 KQ-VPKGLP--AKLSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 48/275 (17%), Positives = 75/275 (27%), Gaps = 19/275 (6%)

Query: 60  SLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLS--STNNMLLVKTENFLPTFQLKVL 117
              SLEYL    +        + +     L+ L +      + +L      L    L+ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 118 ELANCSLNVVPTFLLHQY---DLKYLDLSLNNLVG---DFPSWMLQNNTKLEVLFLTNNS 171
            L N  +       L +    DL  L+L   +                  L+VL +    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 172 FTGNLRLPNTKHDFLHHLDASSNNFIG------TLPQDMGTILKKLLVLDISNNHFEGNI 225
                         L  LD S N  +G       L       L+ L + +       G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 226 PSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQME 285
            +      +L  L LS N+  +    P       L  L+LS              L    
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---S 277

Query: 286 FLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSG 320
            L L  N+         L   ++  L +  N    
Sbjct: 278 VLDLSYNRLDRNPSPDEL--PQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 45/245 (18%), Positives = 81/245 (33%), Gaps = 20/245 (8%)

Query: 212 LVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFL--TGCISLWFLDLSDNN 269
            +L   +   +    + + +   L  L +             L   G   L  L L +  
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 270 FYGQFFSKDLNLT--QMEFLYLENNKFSGKIEE----GLLNSTKLYQLDISHNFLSGHIP 323
             G      L  T   +  L L N  ++ +              L  L I+         
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 324 HWMGNFSNLEILLMSNNCLEGNI-------PVQLLNHRTLKLLSVSENYLSGSMTSSF-N 375
             +  F  L  L +S+N   G         P++    + L L +      SG  ++    
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 376 LSSLKHLYVQKNALSGPIPDMLFR-SSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH 434
              L+ L +  N+L            S+L +L+L    L+ Q+P  +    +L ++DLS+
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSY 283

Query: 435 NRFNG 439
           NR + 
Sbjct: 284 NRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.0 bits (153), Expect = 8e-11
 Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 17/147 (11%)

Query: 15  LANLTILQVLDLSG---------SSSNCLKYLSHLKVLDISHNQ---LSGSLSSTITSLT 62
           +     L  LDLS           S+ C      L+VL + +      SG  S+   +  
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 63  SLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANC 122
            L+ LDLS+N+        S    S+L  L LS     L    +      +L VL+L+  
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF--TGLKQVPKGLPA--KLSVLDLSYN 284

Query: 123 SLNVVPTFLLHQYDLKYLDLSLNNLVG 149
            L+  P+       +  L L  N  + 
Sbjct: 285 RLDRNPSPDELPQ-VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 51/288 (17%), Positives = 87/288 (30%), Gaps = 29/288 (10%)

Query: 327 GNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF----NLSSLKHL 382
           G  S   +L   +   +      ++   +LK L+V    +   +         +S L+ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 383 YVQKNALSGPIPDMLFR--SSKLMTLDLRGNNLEGQIPD----QICQLRRLGMMDLSHNR 436
            ++   ++G  P  L       L  L+LR  +   +       Q      L ++ ++   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 437 FNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQ 496
              +       +    +  +DL          L        + +   L +    M T   
Sbjct: 161 SL-NFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 497 QVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD-LQKIRGLNLSHNCLSG 555
                              L     LDLS N L     +   D   ++  LNLS   L  
Sbjct: 219 VCSALAA--------ARVQLQG---LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 556 SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG 603
                 + L     LDLS NRL    P    EL  + N ++  N    
Sbjct: 268 VPKGLPAKL---SVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 54/312 (17%), Positives = 98/312 (31%), Gaps = 65/312 (20%)

Query: 262 FLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEG---LLNSTKLYQLDISHNFL 318
            L   D       F+  +    ++ L +   +   +I  G   +L  + L +L + +  +
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 319 SGHIPHWMGNFS--NLEILLMSNNCLEGNIP----VQLLNHRTLKLLSVSENYLSG-SMT 371
           +G  P  +   +  +L IL + N            +Q      LK+LS+++ +    S  
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167

Query: 372 SSFNLSSLKHLYVQKNALSGPIPDM----LFRSSKLMTLDLRGNNLE---GQIPDQICQL 424
                 +L  L +  N   G    +      +   L  L LR   +E   G         
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 425 RRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDL 484
            +L  +DLSHN    +  +   +     + +++L    L   P                 
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPS-QLNSLNLSFTGLKQVPK---------------- 270

Query: 485 EVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR 544
                     P ++ V                     LDLS N L  N      +L ++ 
Sbjct: 271 --------GLPAKLSV---------------------LDLSYNRLDRN--PSPDELPQVG 299

Query: 545 GLNLSHNCLSGS 556
            L+L  N    S
Sbjct: 300 NLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 35/244 (14%), Positives = 76/244 (31%), Gaps = 26/244 (10%)

Query: 375 NLSSLKHLYVQKNALSGPIPDM-LFRSSKLMTLDLRGNNLEGQIPDQ---ICQLRRLGMM 430
              SL++L  + +  +       + +S  L  L +R   +  +I      +  +  L  +
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 431 DLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRD 490
            L +    G+ P          +  ++L     +                   L   ++ 
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW--------------LAELQQW 146

Query: 491 MFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEI----GDLQKIRGL 546
           +    + + +       +          +  LDLS N   G               ++ L
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 547 NLSHN---CLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLS 602
            L +      SG      +    ++ LDLS+N L     A   +  + L++ N+S+  L 
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 603 GLIP 606
            +  
Sbjct: 267 QVPK 270

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSI-------PRSFSNLQMIESLDLSN 574
           L ++          ++     +  L+LS N   G         P  F  LQ++   +   
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 575 NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
              SG   A       L   ++S+N+L      
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 5e-16
 Identities = 50/261 (19%), Positives = 96/261 (36%), Gaps = 23/261 (8%)

Query: 12  LTGLANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
           +            +L     + +     L+ +  +  +++ +  S+   I  L ++  L 
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLF 71

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP 128
           L+ N      PL++L N   L  L L       +    +     +LK L L +  ++ + 
Sbjct: 72  LNGNKLTDIKPLTNLKN---LGWLFLDENK---IKDLSSLKDLKKLKSLSLEHNGISDI- 124

Query: 129 TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH 188
             L+H   L+ L L  NN + D     L   TKL+ L L +N  + ++  P      L +
Sbjct: 125 NGLVHLPQLESLYLG-NNKITDITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQN 179

Query: 189 LDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSED 248
           L   S N I  L    G  LK L VL++ +        +       L++ +  KN     
Sbjct: 180 LYL-SKNHISDLRALAG--LKNLDVLELFSQECLNKPIN---HQSNLVVPNTVKNTDGSL 233

Query: 249 FSTPFLTGCISLWFLDLSDNN 269
            +   ++        ++  + 
Sbjct: 234 VTPEIISDDGDYEKPNVKWHL 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.4 bits (164), Expect = 8e-12
 Identities = 48/270 (17%), Positives = 83/270 (30%), Gaps = 34/270 (12%)

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN-- 170
           +     L   S+    T       +  +  + N+ +       +Q    +  LFL  N  
Sbjct: 22  ETIKDNLKKKSVTDAVTQNELNS-IDQIIAN-NSDIKSVQG--IQYLPNVTKLFLNGNKL 77

Query: 171 -SFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV 229
                   L N     L  L    N             LKKL  L + +N    +I + +
Sbjct: 78  TDIKPLTNLKN-----LGWLFLDENKIKDLSSLKD---LKKLKSLSLEHNGIS-DI-NGL 127

Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL----NLTQME 285
             + +L  L+L  N  +       L+    L  L L DN         D+     LT+++
Sbjct: 128 VHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQI------SDIVPLAGLTKLQ 178

Query: 286 FLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGN 345
            LYL  N  S      L     L  L++          +   N      +  ++  L   
Sbjct: 179 NLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--V 234

Query: 346 IPVQLLNHRTLKLLSVSENYLSGSMTSSFN 375
            P  + +    +  +V  +    +   SF 
Sbjct: 235 TPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.5 bits (159), Expect = 3e-11
 Identities = 49/340 (14%), Positives = 115/340 (33%), Gaps = 28/340 (8%)

Query: 232 MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL----NLTQMEFL 287
             E I  +L K + +            S+  +  ++++       K +     L  +  L
Sbjct: 20  FAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI------KSVQGIQYLPNVTKL 70

Query: 288 YLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIP 347
           +L  NK +  I+  L N   L  L +  N +   +   + +   L+ L + +N +  +I 
Sbjct: 71  FLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DIN 125

Query: 348 VQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLD 407
             L++   L+ L +  N ++  +T    L+ L  L ++ N +S  +P  L   +KL  L 
Sbjct: 126 G-LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 181

Query: 408 LRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQ----WTIENVDLFGGEL 463
           L  N++       +  L+ L +++L          +  +N++        +   +    +
Sbjct: 182 LSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 239

Query: 464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLD 523
           S         +  +     +          +  + K  F  +    L     ++Y V   
Sbjct: 240 SDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGT 299

Query: 524 LSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSN 563
           +   ++              +G          +    ++ 
Sbjct: 300 VIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNF 339

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 42/363 (11%), Positives = 114/363 (31%), Gaps = 71/363 (19%)

Query: 300 EGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLL 359
                  +  + ++    ++  +       ++++ ++ +N+ ++    +Q L +  +  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPN--VTKL 70

Query: 360 SVSENYLSGSMTSSFNLSSLKHLYVQKNALS--GPIPDMLFRSSKLMTLDLRGNNLEGQI 417
            ++ N L+  +    NL +L  L++ +N +     + D+     KL +L L  N +   I
Sbjct: 71  FLNGNKLT-DIKPLTNLKNLGWLFLDENKIKDLSSLKDL----KKLKSLSLEHNGIS-DI 124

Query: 418 PDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTY 477
              +  L +L  + L +N+   +  +  + + +  ++ + L   ++S   PL        
Sbjct: 125 NG-LVHLPQLESLYLGNNKI--TDITVLSRLTK--LDTLSLEDNQISDIVPL-------- 171

Query: 478 YNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEI 537
                                               + L  +  L LS N ++      +
Sbjct: 172 ------------------------------------AGLTKLQNLYLSKNHIS--DLRAL 193

Query: 538 GDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG----QIPAQLIELNFLSN 593
             L+ +  L L             SNL +  ++  ++  L             + N   +
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 253

Query: 594 FNVSYNNLSGLIPDKGQYS----TFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGRE 649
                N +S +             F     +    +   + +      +      ++   
Sbjct: 254 LPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITA 313

Query: 650 DED 652
            + 
Sbjct: 314 PKP 316

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 4   SLTNLYIF------LTGLANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSL 54
            L  L +       +  LA LT LQ L LS    S    L  L +L VL++   +     
Sbjct: 154 KLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 213

Query: 55  SSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVL 92
            +  ++L     +  +  +   P  +S   ++ K  V 
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 25/213 (11%)

Query: 21  LQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFE 75
            Q + L G+      +   +   +L +L +  N L+   ++  T L  LE LDLS N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 76  GPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLL-HQ 134
                ++     +L  L L     +  +    F     L+ L L + +L  +P       
Sbjct: 94  RSVDPATFHGLGRLHTLHLDR-CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 135 YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN--------SFTGNLRLPNTKHDFL 186
            +L +L L  N +    P    +    L+ L L  N        +F     L       L
Sbjct: 153 GNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD---LGR-----L 203

Query: 187 HHLDASSNNFIGTLPQDMGTILKKLLVLDISNN 219
             L   +NN +  LP +    L+ L  L +++N
Sbjct: 204 MTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 44/226 (19%), Positives = 69/226 (30%), Gaps = 33/226 (14%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-GEMKELIILHLSKNNFSEDFST 251
             N I  +P       + L +L + +N     I ++    +  L  L LS N        
Sbjct: 40  HGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDP 98

Query: 252 PFLTGCISLWFLDLSDNNFYGQFFSKDL--NLTQMEFLYLENNKFSGKIEEGLLNS-TKL 308
               G   L  L L       Q     L   L  +++LYL++N     + +        L
Sbjct: 99  ATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNL 155

Query: 309 YQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG 368
             L +  N +S           +L+ LL+  N                ++  V  +    
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQN----------------RVAHVHPHAFRD 199

Query: 369 SMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNL 413
                  L  L  LY+  N LS  +P         L  L L  N  
Sbjct: 200 -------LGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 45/215 (20%), Positives = 79/215 (36%), Gaps = 16/215 (7%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
           +  + + +  N++S   +++  +  +L  L L  N        ++    + LE L LS  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDN 90

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDFPSWML 156
             +  V    F    +L  L L  C L  +   L      L+YL L  N L    P    
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 157 QNNTKLEVLFLTNNSFT----GNLR-LPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKL 211
           ++   L  LFL  N  +       R L +     L  L    N  +  +       L +L
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHS-----LDRLLLHQNR-VAHVHPHAFRDLGRL 203

Query: 212 LVLDISNNHFEGNIPSSV-GEMKELIILHLSKNNF 245
           + L +  N+    +P+     ++ L  L L+ N +
Sbjct: 204 MTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 16/187 (8%)

Query: 259 SLWFLDLSDNNF----YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDI 313
           +   + L  N         F         +  L+L +N  + +I+         L QLD+
Sbjct: 33  ASQRIFLHGNRISHVPAASFR----ACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDL 87

Query: 314 SHNFLSGHIP-HWMGNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSMT 371
           S N     +          L  L +    L+  +   L      L+ L + +N L     
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 372 SSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQLRRLGM 429
            +F +L +L HL++  N +S  +P+  FR    L  L L  N +    P     L RL  
Sbjct: 147 DTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 430 MDLSHNR 436
           + L  N 
Sbjct: 206 LYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 40/166 (24%), Positives = 56/166 (33%), Gaps = 12/166 (7%)

Query: 15  LANLTILQVLDLSGS------SSNCLKYLSHLKVLDISHNQLSGSLSSTI-TSLTSLEYL 67
              L +L+ LDLS +             L  L  L +    L   L   +   L +L+YL
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134

Query: 68  DLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVV 127
            L  N  +   P  +  +   L  L L   N +  V    F     L  L L    +  V
Sbjct: 135 YLQDNALQA-LPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 128 PTFLLHQ-YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
                     L  L L  NNL    P+  L     L+ L L +N +
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 42/251 (16%), Positives = 72/251 (28%), Gaps = 48/251 (19%)

Query: 354 RTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNN 412
              + + +  N +S    +SF    +L  L++  N L+          + L  LDL  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 413 LEGQIPDQI-CQLRRLGMMDLSHNRFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLG 470
               +       L RL  + L        +    F  +    ++ + L    L   P   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA--LQYLYLQDNALQALPDDT 148

Query: 471 FCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELT 530
           F                                           +L  +  L L  N ++
Sbjct: 149 F------------------------------------------RDLGNLTHLFLHGNRIS 166

Query: 531 GNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNF 590
                    L  +  L L  N ++   P +F +L  + +L L  N LS      L  L  
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 591 LSNFNVSYNNL 601
           L    ++ N  
Sbjct: 227 LQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 46/232 (19%), Positives = 72/232 (31%), Gaps = 51/232 (21%)

Query: 377 SSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQI-CQLRRLGMMDLSHN 435
           ++ + +++  N +S            L  L L  N L  +I       L  L  +DLS N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 436 RFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTS 494
               S+    F  + +  +  + L    L    P  F                       
Sbjct: 91  AQLRSVDPATFHGLGR--LHTLHLDRCGLQELGPGLF----------------------- 125

Query: 495 PQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCL 553
                                L  +  L L  N L   +P +   DL  +  L L  N +
Sbjct: 126 -------------------RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI 165

Query: 554 SGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGL 604
           S    R+F  L  ++ L L  NR++  +       L  L    +  NNLS L
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 514 SNLNYMVGLDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCLSGSIP-RSFSNLQMIESLD 571
           + L  +  LDLS N    +V       L ++  L+L    L   +    F  L  ++ L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY 135

Query: 572 LSNNRLSGQIPAQLIE-LNFLSNFNVSYNNLSGLIPD 607
           L +N L   +P      L  L++  +  N +S +   
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPER 171

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 47/242 (19%), Positives = 95/242 (39%), Gaps = 23/242 (9%)

Query: 12  LTGLANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
               A+L  +  L   G   ++   ++YL++L  L++  NQ++  L+  + +LT +  L+
Sbjct: 34  TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELE 91

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP 128
           LS N  +    ++ L +   ++ L L+ST    +           L+VL L    +  + 
Sbjct: 92  LSGNPLKNVSAIAGLQS---IKTLDLTSTQ---ITDVTPLAGLSNLQVLYLDLNQITNIS 145

Query: 129 TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH 188
             L    +L+YL +    +  D     L N +KL  L   +N  +    L +  +  L  
Sbjct: 146 -PLAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISDISPLASLPN--LIE 199

Query: 189 LDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSED 248
           +    NN I  +          L ++ ++N          V     L++ ++ K      
Sbjct: 200 VHL-KNNQISDVSPLAN--TSNLFIVTLTNQTITNQ---PVFYNNNLVVPNVVKGPSGAP 253

Query: 249 FS 250
            +
Sbjct: 254 IA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 7e-12
 Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 22/240 (9%)

Query: 12  LTGLANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
           +     L     +       + +     L  +  L      ++ ++   +  L +L  L+
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLE 69

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP 128
           L  N       L+ L N +K+  L LS      L           +K L+L +  +  V 
Sbjct: 70  LKDNQITD---LAPLKNLTKITELELSGNP---LKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 129 TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH 188
             L    +L+ L L   N + +     L   T L+ L + N   +    L N     L  
Sbjct: 124 -PLAGLSNLQVLYLD-LNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSK--LTT 177

Query: 189 LDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSED 248
           L A  N  I  +       L  L+ + + NN       S +     L I+ L+    +  
Sbjct: 178 LKADDNK-ISDISPLAS--LPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQ 232

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 46/266 (17%), Positives = 98/266 (36%), Gaps = 21/266 (7%)

Query: 156 LQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLD 215
                    +    ++ T  +   +     +  L A     + T+       L  L+ L+
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTG-VTTIEGVQY--LNNLIGLE 69

Query: 216 ISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFF 275
           + +N       + +  + ++  L LS N      +   + G  S+  LDL+         
Sbjct: 70  LKDNQITD--LAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITD--V 122

Query: 276 SKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEIL 335
           +    L+ ++ LYL+ N+ +  I   L   T L  L I +  +S   P  + N S L  L
Sbjct: 123 TPLAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 336 LMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPD 395
              +N +    P  L +   L  + +  N +S  ++   N S+L  + +    ++     
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITNQPV- 234

Query: 396 MLFRSSKLMTLDLRGNNLEGQIPDQI 421
             + ++ ++   ++G +     P  I
Sbjct: 235 -FYNNNLVVPNVVKGPSGAPIAPATI 259

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 4e-11
 Identities = 50/269 (18%), Positives = 94/269 (34%), Gaps = 28/269 (10%)

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
               +     ++    T       +  L       V       +Q    L  L L +N  
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDG-ITTLSAF-GTGVTTIEG--VQYLNNLIGLELKDNQI 75

Query: 173 TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM 232
           T    L N     +  L+ S N  +  +    G  L+ +  LD+++       P  +  +
Sbjct: 76  TDLAPLKNLTK--ITELELSGNP-LKNVSAIAG--LQSIKTLDLTSTQITDVTP--LAGL 128

Query: 233 KELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL----NLTQMEFLY 288
             L +L+L  N  +   +   L G  +L +L + +          DL    NL+++  L 
Sbjct: 129 SNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQV------SDLTPLANLSKLTTLK 179

Query: 289 LENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPV 348
            ++NK S      L +   L ++ + +N +S   P  + N SNL I+ ++N  +      
Sbjct: 180 ADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF 235

Query: 349 QLLNHRTLKLLSVSENYLSGSMTSSFNLS 377
              N     ++           T S N +
Sbjct: 236 YNNNLVVPNVVKGPSGAPIAPATISDNGT 264

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 40/210 (19%), Positives = 86/210 (40%), Gaps = 24/210 (11%)

Query: 231 EMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL----NLTQMEF 286
            +   I +   K+N +    T        +  L               +     L  +  
Sbjct: 17  ALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGV------TTIEGVQYLNNLIG 67

Query: 287 LYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI 346
           L L++N+ +  +   L N TK+ +L++S N L       +    +++ L +++  +    
Sbjct: 68  LELKDNQIT-DLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT 123

Query: 347 PVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTL 406
           P+  L++  L++L +  N ++ +++    L++L++L +    +S   P  L   SKL TL
Sbjct: 124 PLAGLSN--LQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 407 DLRGNNLEGQIPDQICQLRRLGMMDLSHNR 436
               N +   I   +  L  L  + L +N+
Sbjct: 179 KADDNKIS-DISP-LASLPNLIEVHLKNNQ 206

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 44/289 (15%), Positives = 103/289 (35%), Gaps = 41/289 (14%)

Query: 328 NFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKN 387
             +N   +    + +   +    L+   +  LS     ++ ++     L++L  L ++ N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 388 ALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTN 447
            ++   P  L   +K+  L+L GN L+      I  L+ +  +DL+  +     P     
Sbjct: 74  QITDLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 448 MLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNR 507
           +    ++ + L   +++   PL                            ++   +   +
Sbjct: 128 LSN--LQVLYLDLNQITNISPLAGL-----------------------TNLQYLSIGNAQ 162

Query: 508 -YELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM 566
             +L   +NL+ +  L    N+++    S +  L  +  ++L +N +S   P   +N   
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSN 218

Query: 567 IESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS--GLIPDKGQYST 613
           +  + L+N  ++ Q       L   +              I D G Y++
Sbjct: 219 LFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYAS 267

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 25/218 (11%)

Query: 37  LSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANH-----SKLEV 91
               + L +    L    S   ++L ++  + +S +       L  L +H     SK+  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-----TLQQLESHSFYNLSKVTH 84

Query: 92  LLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP--TFLLHQYDLKYLDLSLNNLVG 149
           + + +T N+  +  +       LK L + N  L + P  T +        L+++ N  + 
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 150 DFPSWMLQN-NTKLEVLFLTNNSFT----GNLRLPNTKHDFLHHLDASSNNFIGTLPQDM 204
             P    Q    +   L L NN FT                L  +  + N ++  + +D 
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-----LDAVYLNKNKYLTVIDKDA 199

Query: 205 GTILKKLL-VLDISNNHFEGNIPSSV-GEMKELIILHL 240
              +     +LD+S       +PS     +KELI  + 
Sbjct: 200 FGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 44/257 (17%), Positives = 85/257 (33%), Gaps = 40/257 (15%)

Query: 112 FQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNS 171
            Q +   +    +  +P+        + L L   +L                   + +++
Sbjct: 11  HQEEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLR-----------------TIPSHA 50

Query: 172 FTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-G 230
           F+    LPN     +  +  S +  +  L       L K+  ++I N      I      
Sbjct: 51  FSN---LPN-----ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102

Query: 231 EMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF----YGQFFSKDLNLTQMEF 286
           E+  L  L +             +      + L+++DN +        F    N T    
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL--T 160

Query: 287 LYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWM--GNFSNLEILLMSNNCLEG 344
           L L NN F+  ++    N TKL  + ++ N     I      G +S   +L +S   +  
Sbjct: 161 LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT- 218

Query: 345 NIPVQLLNH-RTLKLLS 360
            +P + L H + L   +
Sbjct: 219 ALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 29/189 (15%), Positives = 66/189 (34%), Gaps = 12/189 (6%)

Query: 15  LANLTILQVLDLSGS------SSNCLKYLSHLKVLDISHNQLSGSLSS-TITSLTSLEYL 67
            +NL  +  + +S         S+    LS +  ++I + +    +    +  L  L++L
Sbjct: 51  FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110

Query: 68  DLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLP-TFQLKVLELANCSLNV 126
            +     +    L+ + +     +L ++    M  +    F     +   L+L N     
Sbjct: 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170

Query: 127 VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQN-NTKLEVLFLTNNSFTGNLRLPNTKHDF 185
           V  +  +   L  + L+ N  +            +   +L ++  S T    LP+   + 
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT---ALPSKGLEH 227

Query: 186 LHHLDASSN 194
           L  L A + 
Sbjct: 228 LKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 38/232 (16%)

Query: 234 ELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN----FYGQFFSKDLNLTQMEFLYL 289
               L L + +     S  F +   ++  + +S +          F    NL+++  + +
Sbjct: 32  STQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDVTLQQLESHSFY---NLSKVTHIEI 87

Query: 290 ENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGHIPHWMGNFS--NLEILLMSNNCLEGNI 346
            N +    I+   L     L  L I +  L    P     +S     IL +++N    +I
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 347 PVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTL 406
           PV                            +    L +  N  +  +    F  +KL  +
Sbjct: 147 PVNAFQGLC---------------------NETLTLKLYNNGFTS-VQGYAFNGTKLDAV 184

Query: 407 DLRGNNLEGQIPDQICQ--LRRLGMMDLSHNRFNGSIPS-CFTNMLQWTIEN 455
            L  N     I             ++D+S      ++PS    ++ +    N
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 36/229 (15%), Positives = 74/229 (32%), Gaps = 29/229 (12%)

Query: 376 LSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQI-CQLRRLGMMDLS 433
             S + L + +  L   IP   F +   +  + +  +    Q+       L ++  +++ 
Sbjct: 30  PPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 434 HNRFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMF 492
           + R    I       +    ++ + +F   L +FP L   Y  T     L++        
Sbjct: 89  NTRNLTYIDPDALKELPL--LKFLGIFNTGLKMFPDLTKVY-STDIFFILEITDNPYMTS 145

Query: 493 TSPQQVKVEFVTKNRYELYNGSNL-NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHN 551
                                  L N  + L L  N  T +V     +  K+  + L+ N
Sbjct: 146 IPVNAF---------------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189

Query: 552 CLSGSIPR-SFSNL-QMIESLDLSNNRLS---GQIPAQLIELNFLSNFN 595
                I + +F  +      LD+S   ++    +    L EL   + + 
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 34/180 (18%), Positives = 71/180 (39%), Gaps = 38/180 (21%)

Query: 4   SLTNLYIF------LTGLANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSL 54
           SLT + +       LTG+     ++ L ++    ++ N +  LS+L+ L I    ++   
Sbjct: 45  SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDK 104

Query: 55  SSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQL 114
              ++ LTSL  LD+S++  +    L+ +    K+  + LS    +  +           
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIM---------- 153

Query: 115 KVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTG 174
               L                +LK L++   + V D+    +++  KL  L+  + +  G
Sbjct: 154 ---PLKTLP------------ELKSLNIQ-FDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 18/188 (9%)

Query: 208 LKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD 267
            K  L   +  +        +  +M  L  + L+  N +       +    ++  L +++
Sbjct: 22  FKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINN 75

Query: 268 NNFYGQFFSKDL----NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP 323
            +        +      L+ +E L +     +      L   T L  LDISH+     I 
Sbjct: 76  IHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

Query: 324 HWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLY 383
             +     +  + +S N    +I   L     LK L++  + +        +   L  LY
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH-DYRGIEDFPKLNQLY 187

Query: 384 VQKNALSG 391
                + G
Sbjct: 188 AFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 137 LKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNF 196
           L Y+ L+ N  V D     ++    ++ L + N   T    +    +  L  L     + 
Sbjct: 46  LTYITLA-NINVTDLTG--IEYAHNIKDLTINNIHATNYNPISGLSN--LERLRIMGKDV 100

Query: 197 IGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTG 256
                 ++   L  L +LDIS++  + +I + +  + ++  + LS N    D     L  
Sbjct: 101 TSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKT 157

Query: 257 CISLWFLDLSDNNFYGQFFSKDL----NLTQMEFLYLENNKFSG 296
              L  L++  +         D     +  ++  LY  +    G
Sbjct: 158 LPELKSLNIQFDGV------HDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 31/194 (15%), Positives = 69/194 (35%), Gaps = 20/194 (10%)

Query: 224 NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL---- 279
           NIP S    K  +   L +++ +            SL ++ L++ N        DL    
Sbjct: 16  NIPDS--TFKAYLNGLLGQSSTAN----ITEAQMNSLTYITLANINV------TDLTGIE 63

Query: 280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSN 339
               ++ L + N   +      +   + L +L I    ++      +   ++L +L +S+
Sbjct: 64  YAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 340 NCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFR 399
           +  + +I  ++     +  + +S N     +     L  LK L +Q + +       +  
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IED 179

Query: 400 SSKLMTLDLRGNNL 413
             KL  L      +
Sbjct: 180 FPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS 573
           S L+ +  L +   ++T +    +  L  +  L++SH+    SI    + L  + S+DLS
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 574 NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606
            N     I   L  L  L + N+ ++ +     
Sbjct: 145 YNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 34/190 (17%)

Query: 57  TITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKV 116
           T   + SL Y+ L+  N      +    N                            +K 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIEYAHN----------------------------IKD 70

Query: 117 LELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL 176
           L + N         +    +L+ L +   ++  D     L   T L +L +++++   ++
Sbjct: 71  LTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSI 128

Query: 177 RLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELI 236
                    ++ +D S N  I  +       L +L  L+I  +    +    + +  +L 
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLKT--LPELKSLNIQFDGVH-DY-RGIEDFPKLN 184

Query: 237 ILHLSKNNFS 246
            L+       
Sbjct: 185 QLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQI 581
           L ++    T    + I  L  +  L +    ++     + S L  +  LD+S++     I
Sbjct: 71  LTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 582 PAQLIELNFLSNFNVSYNNL 601
             ++  L  +++ ++SYN  
Sbjct: 129 LTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 30/167 (17%)

Query: 277 KDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILL 336
            D          L  +  +   E  +     L  + +++  ++  +   +    N++ L 
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINVT-DLTG-IEYAHNIKDLT 72

Query: 337 MSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDM 396
           ++N                   +S               LS+L+ L +    ++      
Sbjct: 73  INNIHA-----------TNYNPIS--------------GLSNLERLRIMGKDVTSDKIPN 107

Query: 397 LFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPS 443
           L   + L  LD+  +  +  I  +I  L ++  +DLS+N     I  
Sbjct: 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 47/239 (19%), Positives = 88/239 (36%), Gaps = 20/239 (8%)

Query: 12  LTGLANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
           +            +L     + +     L+ +  +  +++ +  S+   I  L ++  L 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLF 74

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP 128
           L+ N      PL++L N   L  L L       +    +     +LK L L +  ++ + 
Sbjct: 75  LNGNKLTDIKPLANLKN---LGWLFLDENK---VKDLSSLKDLKKLKSLSLEHNGISDI- 127

Query: 129 TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH 188
             L+H   L+ L L  NN + D     L   TKL+ L L +N  + ++  P      L +
Sbjct: 128 NGLVHLPQLESLYLG-NNKITDITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQN 182

Query: 189 LDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSE 247
           L   S N I  L    G  LK L VL++ +        +    +     +  +  +   
Sbjct: 183 LYL-SKNHISDLRALAG--LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 49/270 (18%), Positives = 86/270 (31%), Gaps = 28/270 (10%)

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
           +     L   S+    T       +  +  + +++        +Q    +  LFL  N  
Sbjct: 25  ETIKDNLKKKSVTDAVTQNELNS-IDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKL 80

Query: 173 TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM 232
           T    L N K+  L  L    N             LKKL  L + +N    +I + +  +
Sbjct: 81  TDIKPLANLKN--LGWLFLDENKVKDLSSLKD---LKKLKSLSLEHNGIS-DI-NGLVHL 133

Query: 233 KELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL----NLTQMEFLY 288
            +L  L+L  N  +       L+    L  L L DN         D+     LT+++ LY
Sbjct: 134 PQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQI------SDIVPLAGLTKLQNLY 184

Query: 289 LENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPV 348
           L  N  S      L     L  L++          +   N      +  ++  L    P 
Sbjct: 185 LSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PE 240

Query: 349 QLLNHRTLKLLSVSENYLSGSMTSSFNLSS 378
            + +    +  +V  +    +   SF    
Sbjct: 241 IISDDGDYEKPNVKWHLPEFTNEVSFIFYQ 270

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 45/231 (19%), Positives = 94/231 (40%), Gaps = 25/231 (10%)

Query: 232 MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL----NLTQMEFL 287
             E I  +L K + +            S+  +  ++++       K +     L  +  L
Sbjct: 23  FAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDI------KSVQGIQYLPNVTKL 73

Query: 288 YLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIP 347
           +L  NK +  I+  L N   L  L +  N +       + +   L+ L + +N +  +I 
Sbjct: 74  FLNGNKLT-DIK-PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DIN 128

Query: 348 VQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLD 407
             L++   L+ L +  N ++  +T    L+ L  L ++ N +S  +P  L   +KL  L 
Sbjct: 129 G-LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY 184

Query: 408 LRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQ-WTIENVD 457
           L  N++       +  L+ L +++L          +  +N++   T++N D
Sbjct: 185 LSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 38/283 (13%), Positives = 78/283 (27%), Gaps = 68/283 (24%)

Query: 34  LKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLL 93
               +     ++    ++ +   T   L S++ +  + ++ +    +  +     +  L 
Sbjct: 20  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS---VQGIQYLPNVTKLF 74

Query: 94  LSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPS 153
           L+      L   +       L  L L    +  + +                        
Sbjct: 75  LNGNK---LTDIKPLANLKNLGWLFLDENKVKDLSS------------------------ 107

Query: 154 WMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLV 213
             L++  KL+ L L +N  +    +    H                        L +L  
Sbjct: 108 --LKDLKKLKSLSLEHNGIS---DINGLVH------------------------LPQLES 138

Query: 214 LDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQ 273
           L + NN       + +  + +L  L L  N  S       L G   L  L LS N+    
Sbjct: 139 LYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHI--S 191

Query: 274 FFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHN 316
                  L  ++ L L + +   K      N      +  +  
Sbjct: 192 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 54/299 (18%), Positives = 89/299 (29%), Gaps = 71/299 (23%)

Query: 14  GLANLTILQVLDLSGSS---------SNCLKYLSHLKVLDISHNQLS----------GSL 54
            L     ++ + LSG++         S  +     L++ + S                 L
Sbjct: 27  VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86

Query: 55  SSTITSLTSLEYLDLSYNNF--EGPCPLSS-LANHSKLEVLLLSSTNNML---------- 101
              +     L  + LS N F      PL   L+ H+ LE L L   NN L          
Sbjct: 87  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH--NNGLGPQAGAKIAR 144

Query: 102 ----LVKTENFLPTFQLKVLELANCSLNVVPTFLL-----HQYDLKYLDLSLNNL----V 148
               L   +       L+ +      L                 L  + +  N +    +
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 149 GDFPSWMLQNNTKLEVLFLTNNSFT--GNLRLPN--TKHDFLHHLDASSNNFIGTLPQDM 204
                  L    +L+VL L +N+FT  G+  L         L  L  +    +       
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LS----AR 259

Query: 205 GTIL----------KKLLVLDISNNHFEGNIPSSVGE-----MKELIILHLSKNNFSED 248
           G               L  L +  N  E +   ++       M +L+ L L+ N FSE+
Sbjct: 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 51/330 (15%), Positives = 99/330 (30%), Gaps = 69/330 (20%)

Query: 40  LKVLDISHNQLSG----SLSSTITSLTSLEYLDLSYNNF--EGPCPLSS-LANHSKLEVL 92
           ++   +  + ++     S+ + +    S++ + LS N    E    LS  +A+   LE+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 93  LLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFP 152
             S  +       +      +L +  L  C              L  + LS N       
Sbjct: 66  EFS--DIFTGRVKDEIPEALRLLLQALLKCP------------KLHTVRLSDNAFGPTAQ 111

Query: 153 SW---MLQNNTKLEVLFLTNNSFT-------------GNLRLPNTKHDFLHHLDASSNNF 196
                 L  +T LE L+L NN                  +         L  +    N  
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 197 IGTLPQDMGTI--------LKKLLVLDISNNHF-----EGNIPSSVGEMKELIILHLSKN 243
                ++             + L  + +  N       E  +   +   +EL +L L  N
Sbjct: 172 -----ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

Query: 244 NFSEDFSTPF---LTGCISLWFLDLSDNNFY---GQFFSKDLNL---TQMEFLYLENNKF 294
            F+   S+     L    +L  L L+D               +      ++ L L+ N+ 
Sbjct: 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

Query: 295 SGK----IEEGLL-NSTKLYQLDISHNFLS 319
                  ++  +      L  L+++ N  S
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 50/346 (14%), Positives = 109/346 (31%), Gaps = 75/346 (21%)

Query: 134 QYDLKYLDLSLNNLVGDFPSWM---LQNNTKLEVLFLTNNSFTGN--------LRLPNTK 182
           ++ ++   L L+ +  +    +   L  +  ++ + L+ N+            +      
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA----S 58

Query: 183 HDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSK 242
              L   + S + F G +  ++   L+ LL               ++ +  +L  + LS 
Sbjct: 59  KKDLEIAEFS-DIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLSD 103

Query: 243 NNFSEDFSTPF---LTGCISLWFLDLSDNNF-------------YGQFFSKDLNLTQMEF 286
           N F      P    L+    L  L L +N                     K  N   +  
Sbjct: 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163

Query: 287 LYLENNKFSGK----IEEGLLNSTKLYQLDISHNFL-----SGHIPHWMGNFSNLEILLM 337
           +    N+          +   +   L+ + +  N +        +   +     L++L +
Sbjct: 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL 223

Query: 338 SNNCLEGNIPVQ-----LLNHRTLKLLSVSENYLS-------GSMTSSFNLSSLKHLYVQ 385
            +N    ++        L +   L+ L +++  LS           S      L+ L +Q
Sbjct: 224 QDNTF-THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282

Query: 386 KNALSGPIPDMLFRS-----SKLMTLDLRGNNL--EGQIPDQICQL 424
            N +       L          L+ L+L GN    E  + D+I ++
Sbjct: 283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 45/283 (15%), Positives = 82/283 (28%), Gaps = 60/283 (21%)

Query: 5   LTNLYIFLTGLANLTILQVLDLSGSS---------SNCLKYLSHLKVLDISHNQLS---- 51
              L + L  L     L  + LS ++          + L   + L+ L + +N L     
Sbjct: 80  PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139

Query: 52  ---------GSLSSTITSLTSLEYLDLSYNNF--EGPCPLSS-LANHSKLEVLLLSSTNN 99
                     +++    +   L  +    N          +    +H  L  + +   N 
Sbjct: 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ-NG 198

Query: 100 MLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGD----FPSWM 155
           +     E+ L         LA C             +LK LDL  N           +  
Sbjct: 199 IRPEGIEHLLLEG------LAYCQ------------ELKVLDLQDNTF-THLGSSALAIA 239

Query: 156 LQNNTKLEVLFLTNNSFTGN------LRLPNTKHDFLHHLDASSNNF----IGTLPQDMG 205
           L++   L  L L +   +              ++  L  L    N      + TL   + 
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 206 TILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSED 248
             +  LL L+++ N F       V E++E+            D
Sbjct: 300 EKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGELDELD 341

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 25/170 (14%)

Query: 21  LQVLDLSG------SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNF 74
             +LDLS        +      L++L  L +SHN L+   S     + +L YLDLS N+ 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH- 99

Query: 75  EGPCPLSSLANH-----SKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
                L +L          LEVLLL + N++++V    F    QL+ L L+   ++  P 
Sbjct: 100 -----LHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 130 FLLHQYD----LKYLDLSLNNLVGDFPSWMLQNNTKL--EVLFLTNNSFT 173
            L+   +    L  LDLS N L    P   LQ         L+L NN   
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 311 LDISHNFLSGHIPHWM-GNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSG 368
           LD+SHN LS     W     +NL  LL+S+N L   I  +       L+ L +S N+L  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 369 SMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQI----C 422
                F +L +L+ L +  N +   +    F   ++L  L L  N +  + P ++     
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGN 160

Query: 423 QLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFG 460
           +L +L ++DLS N+      +    +  W    + L  
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 19/171 (11%)

Query: 62  TSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELAN 121
           +    LDLS+NN        +    + L  LLLS  N++  + +E F+P   L+ L+L++
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLSS 97

Query: 122 CSLNVVPTFLLHQY-DLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN--------SF 172
             L+ +  FL      L+ L L  NN +        ++  +L+ L+L+ N          
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLY-NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 173 TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKL--LVLDISNNHF 221
               +LP      L  LD SSN  +  LP      L       L + NN  
Sbjct: 157 KDGNKLPK-----LMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 56/191 (29%), Positives = 76/191 (39%), Gaps = 32/191 (16%)

Query: 120 ANCS---LNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN------ 170
            +CS   L  VP  L        LDLS NNL      W     T L  L L++N      
Sbjct: 23  LSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 171 --SFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSS 228
             +F     +PN     L +LD SSN+ + TL + + + L+ L VL + NNH    +  +
Sbjct: 81  SEAFVP---VPN-----LRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIV-VVDRN 130

Query: 229 V-GEMKELIILHLSKNNFS--EDFSTPFLTGCISLWFLDLSDNNF----YGQFFSKDLNL 281
              +M +L  L+LS+N  S               L  LDLS N            + L  
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL--QKLPA 188

Query: 282 TQMEFLYLENN 292
                LYL NN
Sbjct: 189 WVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 514 SNLNYMVGLDLSCNELTGNVPSEI-GDLQKIRGLNLSHNCLSGSIPR-SFSNLQMIESLD 571
             +  +  LDLS N L   +   +  DLQ +  L L +N +   + R +F ++  ++ L 
Sbjct: 85  VPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLY 142

Query: 572 LSNNRLSGQIPAQLIE----LNFLSNFNVSYNNLSGLIPD 607
           LS N++S + P +LI+    L  L   ++S N L  L   
Sbjct: 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 36/186 (19%)

Query: 237 ILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFY---GQFFSKDLNLTQMEFLYLENNK 293
           +L LS NN S   +    T   +L  L LS N+      + F     +  + +L L +N 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---PVPNLRYLDLSSNH 99

Query: 294 FSGKIEEGLLNS-TKLYQLDISHNFLSGHIPHWMGNF---SNLEILLMSNNCLEGNIPVQ 349
               ++E L +    L  L + +N +   +      F   + L+ L +S N         
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIV-VVDR--NAFEDMAQLQKLYLSQN--------- 146

Query: 350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLM--TLD 407
                  ++       +         L  L  L +  N L       L +    +   L 
Sbjct: 147 -------QISRFPVELIKD----GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Query: 408 LRGNNL 413
           L  N L
Sbjct: 196 LHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 10/116 (8%)

Query: 15  LANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDL 69
              +  L+ LDLS +            L  L+VL + +N +     +    +  L+ L L
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143

Query: 70  SYNNFEG--PCPLSSLANHSKLEVLLLSSTNNMLLVKTENF--LPTFQLKVLELAN 121
           S N         +       KL +L LSS N +  +   +   LP +    L L N
Sbjct: 144 SQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 522 LDLSCNELTGNVPSEI--GDLQKIRGLNLSHNCLSGSIPR-SFSNLQMIESLDLSNNRLS 578
           LDLS N L+  + +E     L  +  L LSHN L+  I   +F  +  +  LDLS+N L 
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 579 GQIPAQ-LIELNFLSNFNVSYNNLSGL 604
             +      +L  L    +  N++  +
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIVVV 127

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 49/193 (25%), Positives = 72/193 (37%), Gaps = 20/193 (10%)

Query: 224 NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ 283
           ++P          ILHLS+N                L  L+L            D  L  
Sbjct: 28  DLPKD------TTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAEL--TKLQVDGTLPV 78

Query: 284 MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNF---SNLEILLMSNN 340
           +  L L +N+    +         L  LD+S N L+  +P   G       L+ L +  N
Sbjct: 79  LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL--GALRGLGELQELYLKGN 134

Query: 341 CLEGNIPVQLLNHRT-LKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLF 398
            L+  +P  LL     L+ LS++ N L+         L +L  L +Q+N+L   IP   F
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192

Query: 399 RSSKLMTLDLRGN 411
            S  L    L GN
Sbjct: 193 GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 50/171 (29%), Positives = 68/171 (39%), Gaps = 28/171 (16%)

Query: 12  LTGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSY 71
           L     LT L +     +       L  L  LD+SHNQL  SL     +L +L  LD+S+
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 72  NNFEGPCPLSSLANH-----SKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNV 126
           N       L+SL         +L+ L L   N +  +      PT +L+ L LAN +L  
Sbjct: 110 NR------LTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE 162

Query: 127 VPTFL---LHQYDLKYLDLSLNNL----VGDFPSWMLQNNTKLEVLFLTNN 170
           +P  L   L    L  L L  N+L     G F       +  L   FL  N
Sbjct: 163 LPAGLLNGLEN--LDTLLLQENSLYTIPKGFF------GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 47/185 (25%), Positives = 67/185 (36%), Gaps = 13/185 (7%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
               +L +S N L     +T+   T L  L+L          L        L  L LS  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLS-- 85

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDFPSWML 156
           +N L            L VL+++   L  +P   L    +L+ L L  N L    P  +L
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLL 144

Query: 157 QNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLD--ASSNNFIGTLPQDMGTILKKLLVL 214
               KLE L L NN+ T    LP    + L +LD      N + T+P+        L   
Sbjct: 145 TPTPKLEKLSLANNNLT---ELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFA 200

Query: 215 DISNN 219
            +  N
Sbjct: 201 FLHGN 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 19/211 (9%)

Query: 12  LTGLANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
           +     L      +L     +     K LS ++  +  ++ +  SL+  +   T+L+ L 
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELH 69

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP 128
           LS+N       LS L + +KLE L ++       +K  N +P+  L  L L N  L    
Sbjct: 70  LSHNQISD---LSPLKDLTKLEELSVNRNR----LKNLNGIPSACLSRLFLDNNELRDT- 121

Query: 129 TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH 188
             L+H  +L+ L +  N L        L   +KLEVL L  N  T    L   K   ++ 
Sbjct: 122 DSLIHLKNLEILSIRNNKLK-SIVM--LGFLSKLEVLDLHGNEITNTGGLTRLKK--VNW 176

Query: 189 LDASSNNFIGTLPQDMGTILKKLLVLDISNN 219
           +D  +       P      L     +   + 
Sbjct: 177 IDL-TGQKCVNEPVKYQPELYITNTVKDPDG 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 22/187 (11%)

Query: 254 LTGCISLWFLDLSDNNFYGQFFSKDL----NLTQMEFLYLENNKFSGKIEEGLLNSTKLY 309
             G  +    +L   +        DL     L+ ++    +N+     +  G+   T L 
Sbjct: 15  DPGLANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLK 66

Query: 310 QLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGS 369
           +L +SHN +S   P  + + + LE L ++ N L+    +  +    L  L +  N L   
Sbjct: 67  ELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELR-D 120

Query: 370 MTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM 429
             S  +L +L+ L ++ N L   +   L   SKL  LDL GN +       + +L+++  
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITN--TGGLTRLKKVNW 176

Query: 430 MDLSHNR 436
           +DL+  +
Sbjct: 177 IDLTGQK 183

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 54/241 (22%), Positives = 84/241 (34%), Gaps = 44/241 (18%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSL-----ANHSKLEVL 92
              K LD+S N L    S +  S   L+ LDLS         + ++      + S L  L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTL 81

Query: 93  LLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDF 151
           +L+  N +  +    F     L+ L     +L  +  F +     LK L+++ N +    
Sbjct: 82  ILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI---- 136

Query: 152 PSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKL 211
                      ++       F+    L N     L HLD SSN  I ++      +L ++
Sbjct: 137 --------QSFKL----PEYFSN---LTN-----LEHLDLSSNK-IQSIYCTDLRVLHQM 175

Query: 212 ----LVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD 267
               L LD+S N     I     +   L  L L  N         F     SL  + L  
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIF-DRLTSLQKIWLHT 233

Query: 268 N 268
           N
Sbjct: 234 N 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 17/166 (10%)

Query: 17  NLTILQVLDLSG-----SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSY 71
           +L+ L  L L+G      +      LS L+ L      L+   +  I  L +L+ L++++
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 72  N---NFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKV----LELANCSL 124
           N   +F+ P   S+L N   LE L LSS N +  +   +     Q+ +    L+L+   +
Sbjct: 134 NLIQSFKLPEYFSNLTN---LEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 125 NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN 170
           N +      +  LK L L  N L    P  +    T L+ ++L  N
Sbjct: 190 NFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 38/228 (16%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-GEMKELIILHLSKNNFSEDFST 251
           S N +  L         +L VLD+S    +  I       +  L  L L+ N        
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 252 PFLTGCISLWFLDLSDNNFYGQFFSKDL------NLTQMEFLYLENNKFSGKIEEGLLNS 305
            F +G  SL  L   + N         L      +L  ++ L + +N           ++
Sbjct: 95  AF-SGLSSLQKLVAVETN------LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 306 -TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSEN 364
            T L  LD+S N +   I     +   L  +              LLN      L +S N
Sbjct: 148 LTNLEHLDLSSNKIQ-SIYC--TDLRVLHQM-------------PLLNLS----LDLSLN 187

Query: 365 YLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGN 411
            ++     +F    LK L +  N L   +PD +F   + L  + L  N
Sbjct: 188 PMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 38/195 (19%)

Query: 16  ANLTILQVLDLSGSSSNCLKY--------LSHLKVLDISHNQLSGSLSSTI-TSLTSLEY 66
            +   LQVLDL   S   ++         LSHL  L ++ N +  SL+    + L+SL+ 
Sbjct: 49  FSFPELQVLDL---SRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104

Query: 67  LDLSYNNFEGPCPLSSLANH-----SKLEVLLLSSTNNML--LVKTENFLPTFQLKVLEL 119
           L     N      L+SL N        L+ L ++  +N++      E F     L+ L+L
Sbjct: 105 LVAVETN------LASLENFPIGHLKTLKELNVA--HNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 120 ANCSLNVVPTFLLH-----QYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTG 174
           ++  +  +    L            LDLSLN +         +   +L+ L L  N    
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFK-EIRLKELALDTNQLK- 213

Query: 175 NLRLPNTKHDFLHHL 189
              +P+   D L  L
Sbjct: 214 --SVPDGIFDRLTSL 226

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 34/228 (14%)

Query: 224 NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF----YGQFFSKDL 279
           N+P S         L LS N      S  F      L  LDLS         G +     
Sbjct: 25  NLPFS------TKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQ---- 73

Query: 280 NLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS 338
           +L+ +  L L  N     +  G  +  + L +L      L+      +G+   L+ L ++
Sbjct: 74  SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 339 NNCLEGNIPV-----QLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLK----HLYVQKNA 388
           +N ++ +  +      L N   L+ L +S N +     +    L  +      L +  N 
Sbjct: 133 HNLIQ-SFKLPEYFSNLTN---LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 389 LSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ-LRRLGMMDLSHN 435
           ++  I    F+  +L  L L  N L+  +PD I   L  L  + L  N
Sbjct: 189 MNF-IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 12/114 (10%)

Query: 12  LTGLANLTILQVLDLSG----SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYL 67
           L  L  L ++  LDLS     +    L  L  L+VL  S N L  ++   + +L  L+ L
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQEL 513

Query: 68  DLSYNNFEGPCPLSSLANHSKLEVLLLS----STNNMLLVKTENFLPTFQLKVL 117
            L  N  +    +  L +  +L +L L          +  +    LP   +  +
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP--SVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 56/334 (16%), Positives = 109/334 (32%), Gaps = 17/334 (5%)

Query: 101 LLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNT 160
           LL + E       + V     C        L     +  L L ++               
Sbjct: 235 LLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRN 294

Query: 161 KLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGT------ILKKLLVL 214
           +   ++L +                +    + S      L              ++L   
Sbjct: 295 RPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRC 354

Query: 215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF 274
           ++S       + S +   KEL  L   +N +        +     L +   +   F    
Sbjct: 355 ELSVEKST-VLQSELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETLQYFSTL- 411

Query: 275 FSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEI 334
             K ++  +  +L    +KF  +     +    +  L ++H  L+  + H +     +  
Sbjct: 412 --KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTH 467

Query: 335 LLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSG-PI 393
           L +S+N L   +P  L   R L++L  S+N L  ++    NL  L+ L +  N L     
Sbjct: 468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAA 525

Query: 394 PDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRL 427
              L    +L+ L+L+GN+L  Q      +L  +
Sbjct: 526 IQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQI 581
           L L+  +LT  V   +  L  +  L+LSHN L  ++P + + L+ +E L  S+N L   +
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501

Query: 582 PAQLIELNFLSNFNVSYNNLSGL 604
              +  L  L    +  N L   
Sbjct: 502 DG-VANLPRLQELLLCNNRLQQS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 48/246 (19%), Positives = 82/246 (33%), Gaps = 16/246 (6%)

Query: 25  DLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNN-FEGPCPLSSL 83
            L   +   +   S  +   +              +   L   +LS          L S 
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESC 371

Query: 84  ANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLS 143
               +LE         ++L+        ++ + L+  +    V P    +  DL+   L 
Sbjct: 372 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 431

Query: 144 LNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKH-DFLHHLDASSNNFIGTLPQ 202
            N++       +      + VL L +   T    L + +    + HLD S N  +  LP 
Sbjct: 432 ENSV-------LKMEYADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNR-LRALPP 480

Query: 203 DMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWF 262
            +   L+ L VL  S+N  E N+   V  +  L  L L  N   +  +   L  C  L  
Sbjct: 481 ALAA-LRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537

Query: 263 LDLSDN 268
           L+L  N
Sbjct: 538 LNLQGN 543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 49/349 (14%), Positives = 92/349 (26%), Gaps = 62/349 (17%)

Query: 34  LKYLSHLKVLDISHNQLSGS----LSSTITSL-TSLEYLDLSYNNF--EGPCPLSSL--A 84
                 +  LD+S N L       L     +   S+  L+LS N+   +    L  +  A
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 85  NHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSL 144
             + +  L LS   N L  K+ + L    +K L     +             +  LDL  
Sbjct: 78  IPANVTSLNLS--GNFLSYKSSDEL----VKTLAAIPFT-------------ITVLDLGW 118

Query: 145 NNL----VGDFPSWMLQNNTKLEVLFLTNNSFTGN--------LRLPNTKHDFLHHLDAS 192
           N+       +F          +  L L  N             L         ++ L+  
Sbjct: 119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN---VNSLNLR 175

Query: 193 SNNFIGTLPQDMGTILK----KLLVLDISNNHFEGNIPSSVGEM-----KELIILHLSKN 243
            NN       ++   L      +  LD+S N       + +  +       ++ L+L  N
Sbjct: 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 244 NFSEDFSTPF---LTGCISLWFLDLSDNNFYGQ-------FFSKDLNLTQMEFLYLENNK 293
                              L  + L  +              +   N+ ++  +     +
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295

Query: 294 FSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
                   + N  +          L      +          L   + L
Sbjct: 296 IHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 51/278 (18%)

Query: 137 LKYLDLSLNNL----VGDFPSWMLQNNTKLEVLFLTNNSFTGN--------LRLPNTKHD 184
           +  LDLSLNNL      +           +  L L+ NS            L        
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN-- 81

Query: 185 FLHHLDASSNNFIGTLPQDMGTILK----KLLVLDISNNHFEGNIPSSVGEM-----KEL 235
            +  L+ S N        ++   L      + VLD+  N F     S   +        +
Sbjct: 82  -VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140

Query: 236 IILHLSKNNFSED----FSTPFLTGCISLWFLDLSDNNFY---GQFFSKDL--NLTQMEF 286
             L+L  N+                  ++  L+L  NN         +K L      +  
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200

Query: 287 LYLENNKFSGK----IEEGLL-NSTKLYQLDISHNFLSG----HIPHWMGNFSNLEILLM 337
           L L  N    K    +          +  L++  N L G    ++     +  +L+ + +
Sbjct: 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 338 SNNCLEGNIPVQ--------LLNHRTLKLLSVSENYLS 367
             + +  N+  +          N + + L+  +   + 
Sbjct: 261 DYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 45/302 (14%), Positives = 90/302 (29%), Gaps = 65/302 (21%)

Query: 155 MLQNNTKLEVLFLTNNSFTGN--------LRLPNTKHDFLHHLDASSNNFIGTLPQDMGT 206
                  +  L L+ N+                      +  L+ S N+       ++  
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPAS---VTSLNLSGNSLGFKNSDELVQ 73

Query: 207 ILKK----LLVLDISNNHFEGNIPSSVGEM-----KELIILHLSKNNFSED----FSTPF 253
           IL      +  L++S N         + +        + +L L  N+FS      F   F
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 254 LTGCISLWFLDLSDNNFY---GQFFSKDL--NLTQMEFLYLENNKFSGK----IEEGLL- 303
                S+  L+L  N+          + L      +  L L  N  + K    + + L  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 304 NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE 363
               +  LD+S N L         +++ L  +  S                 +  L++  
Sbjct: 194 IPASVTSLDLSANLLGLK------SYAELAYIFSSIPN-------------HVVSLNLCL 234

Query: 364 NYLSGSMTSSF-----NLSSLKHLYVQKNALSGPIPD-------MLFRSSKLMTLDLRGN 411
           N L G    +      +L  L+ +Y+  + +     +             K++ +D  G 
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

Query: 412 NL 413
            +
Sbjct: 295 EI 296

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 17/173 (9%)

Query: 12  LTGLANLTILQVLDLSGSS------SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLE 65
           L    +   +Q +DLS S          L   S L+ L +   +LS  + +T+   ++L 
Sbjct: 86  LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145

Query: 66  YLDLSYNNFEGPCPLSSLANH-SKLEVLLLSS----TNNMLLVKTENFLPTFQLKVLELA 120
            L+LS  +      L +L +  S+L+ L LS     T   + V   +      +  L L+
Sbjct: 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE--TITQLNLS 203

Query: 121 NCSLNV----VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTN 169
               N+    + T +    +L +LDLS + ++ +           L+ L L+ 
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 12  LTGLANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
                    L+ L       +S   L  L+ LK L++S N++SG L        +L +L+
Sbjct: 35  EGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLS 95
           LS N  +    +  L     L+ L L 
Sbjct: 95  LSGNKIKDLSTIEPLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSN 339
              ++EFL   N   +  I   L    KL +L++S N +SG +        NL  L +S 
Sbjct: 40  EFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 340 NCLEGNIPVQLLNH-RTLKLLSVSEN 364
           N ++    ++ L     LK L +   
Sbjct: 98  NKIKDLSTIEPLKKLENLKSLDLFNC 123

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 35/203 (17%), Positives = 61/203 (30%), Gaps = 36/203 (17%)

Query: 14  GLANLTILQVLDLSGSS---------SNCLKYLSHLKVLDISHNQLSGS----LSSTITS 60
           GLA  T +  L L  +          +  L     L+ L++++N    +    L+     
Sbjct: 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAARE 237

Query: 61  LTSLEYLDLSYNNF--EGPCPLSSL--ANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKV 116
             SLE L L +N    EG   L  L  A      V++  +    +            L  
Sbjct: 238 HPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV-----ILSE 292

Query: 117 LELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSW----MLQNNTKLEVLFLTNNSF 172
           ++    S +     +    +L   DL  ++       W    +L+   ++  L     S 
Sbjct: 293 VQRNLNSWDRA--RVQRHLELLLRDLE-DSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

Query: 173 T--GNLRL-----PNTKHDFLHH 188
                            H   HH
Sbjct: 350 GSPSGSWSHPQFEKGAGHHHHHH 372

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 36/274 (13%), Positives = 74/274 (27%), Gaps = 58/274 (21%)

Query: 15  LANLTILQVLDLSG---SSSNC---LKYLSHLKVLDISHNQLS----GSLSSTITS-LTS 63
            +    L  ++L+      +     L      + L +  N L       L   +      
Sbjct: 97  GSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQ 156

Query: 64  LEYLDLSYNNF--EGPCPLSS-LANHSKLEVLLLSSTN----------NMLLVKTENFLP 110
           +  L LS N     G   L   LA ++ +  L L  T             L         
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR----- 211

Query: 111 TFQLKVLELANCSL-----NVVPTFLLHQYDLKYLDLSLNNLVGDFPSWML-------QN 158
             QL+ L +A           +         L+ L L  N L       +L       + 
Sbjct: 212 --QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL-SSEGRQVLRDLGGAAEG 268

Query: 159 NTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISN 218
             ++ V      + +          ++   + +     + +  +       +LL+ D+ +
Sbjct: 269 GARVVVSLTEGTAVS----------EYWSVILSEVQRNLNSWDRARVQRHLELLLRDLED 318

Query: 219 NHFEGNIPSSVGEM----KELIILHLSKNNFSED 248
           +      P    ++     E+  L     +    
Sbjct: 319 SRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSP 352

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 12  LTGLANLTILQVLDLSGSSSNCLKYLSH-------LKVLDISHNQLSGSLSSTITSLTSL 64
           ++ L+ +  L++L L     N +K + +       L+ L IS+NQ++ SLS  I  L +L
Sbjct: 63  ISSLSGMENLRILSLG---RNLIKKIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNL 117

Query: 65  EYLDLSYNNFEGPCPLSSLANHSKLEVLLLS 95
             L +S N       +  LA   KLE LLL+
Sbjct: 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 47/194 (24%)

Query: 17  NLTILQVLDLSGSSSN------CLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLS 70
             T  + ++L G           L  L   K L +S N +   +SS ++ + +L  L L 
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLG 78

Query: 71  YNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLE-LANCSLNVVPT 129
            N  +    L ++A+   LE L +S   N             Q+  L  +          
Sbjct: 79  RNLIKKIENLDAVAD--TLEELWIS--YN-------------QIASLSGIEKL------- 114

Query: 130 FLLHQYDLKYLDLSLNNLVGDFPS-WMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH 188
                 +L+ L +S NN + ++     L    KLE L L  N    + +  N   ++   
Sbjct: 115 -----VNLRVLYMS-NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168

Query: 189 LDASSNNFIGTLPQ 202
           +       +  LP 
Sbjct: 169 V-------VKRLPN 175

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 13/89 (14%)

Query: 14  GLANLTILQVLDLSGSSSNC------LKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYL 67
            L+ L   + L LS    N       L  + +L++L +  N +   + +      +LE L
Sbjct: 43  TLSTLKACKHLALST---NNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL 98

Query: 68  DLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
            +SYN       LS +     L VL +S+
Sbjct: 99  WISYNQIAS---LSGIEKLVNLRVLYMSN 124

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 10/133 (7%)

Query: 210 KLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN 269
           + + L       E  + +++  +K    L LS NN         L+G  +L  L L  N 
Sbjct: 26  EKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNL 81

Query: 270 FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLS--GHIPHWMG 327
              +  + D     +E L++  N+ +  +  G+     L  L +S+N ++  G I   + 
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDK-LA 137

Query: 328 NFSNLEILLMSNN 340
               LE LL++ N
Sbjct: 138 ALDKLEDLLLAGN 150

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 15  LANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSY 71
            A    L+ L L      S + L  L  LK L++S N++ G L      L +L +L+LS 
Sbjct: 45  TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 72  NNFEGPCPLSSLANHSKLEVLLLS 95
           N  +    L  L     L+ L L 
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 14/135 (10%)

Query: 231 EMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE 290
           +MK  I L L     +           +    LD   +N  G+          +EFL L 
Sbjct: 9   DMKRRIHLELRNRTPAA----------VRELVLDNCKSND-GKIEGLTAEFVNLEFLSLI 57

Query: 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL 350
           N      +   L    KL +L++S N + G +        NL  L +S N L+    ++ 
Sbjct: 58  NVGLI-SVS-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115

Query: 351 LNH-RTLKLLSVSEN 364
           L     LK L +   
Sbjct: 116 LKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 60  SLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLEL 119
           +  ++  L L              A    LE L L    N+ L+   N     +LK LEL
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI---NVGLISVSNLPKLPKLKKLEL 78

Query: 120 ANCSLNVVPTFLLHQYD-LKYLDLSLNNLVGDFPSWM-LQNNTKLEVLFLTNNSFT 173
           +   +      L  +   L +L+LS  N + D  +   L+    L+ L L N   T
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLS-GNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 16  ANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYN 72
           A L     +D S       +    L  LK L +++N++         +L  L  L L+ N
Sbjct: 39  ATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 73  NFEGPCPLSSLANHSKLEVLLLS 95
           +      L  LA+   L  L + 
Sbjct: 99  SLVELGDLDPLASLKSLTYLCIL 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 13  TGLANLTILQVLDLSGSS----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLD 68
               N    + LDL G       N    L     +D S N++   L      L  L+ L 
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLL 70

Query: 69  LSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQ-LKVLELANC 122
           ++ N                L  L+L++ N+++ +   + L + + L  L +   
Sbjct: 71  VNNNRICRIGE-GLDQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 42  VLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNML 101
           ++ ++   +    ++  T+      LDL          L +  +    + +  S  +N +
Sbjct: 1   MVKLTAELIE--QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQ--FDAIDFS--DNEI 54

Query: 102 LVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDFPSWM-LQNN 159
             K + F    +LK L + N  +  +   L     DL  L L+ NN + +      L + 
Sbjct: 55  -RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT-NNSLVELGDLDPLASL 112

Query: 160 TKLEVLFLTNNSFT 173
             L  L +  N  T
Sbjct: 113 KSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 254 LTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDI 313
            T  +    LDL          +    L Q + +   +N+   K++ G     +L  L +
Sbjct: 15  YTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLV 71

Query: 314 SHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSEN 364
           ++N +            +L  L+++NN L     +  L   ++L  L +  N
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 12/117 (10%)

Query: 156 LQNNTKLEVLFLTNNSFTGNLRLPNTKHDF--LHHLDASSNNF--IGTLPQDMGTILKKL 211
             N  +   L L          + N          +D S N    +   P      L++L
Sbjct: 15  YTNAVRDRELDLRGYKIP---VIENLGATLDQFDAIDFSDNEIRKLDGFPL-----LRRL 66

Query: 212 LVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDN 268
             L ++NN            + +L  L L+ N+  E      L    SL +L +  N
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 92/610 (15%), Positives = 176/610 (28%), Gaps = 197/610 (32%)

Query: 183 HDFLHHLDASSN----NFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIIL 238
           H   HH+D  +      +   L       +      D+ +     +I S   E+  +I+ 
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSK-EEIDHIIM- 56

Query: 239 HLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKI 298
             SK+  S    T  L      W L         +F  + L     +FL    +    + 
Sbjct: 57  --SKDAVSG---TLRL-----FWTLLSKQEEMVQKFVEEVLR-INYKFLM---SPIKTEQ 102

Query: 299 EEGLLNSTKLY--QLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL-----EGNIPVQ-- 349
            +  +  T++Y  Q D  +N       +   N S L+  L     L       N+ +   
Sbjct: 103 RQPSMM-TRMYIEQRDRLYNDNQVFAKY---NVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 350 ------------LLNHRTLKLLSVSENYLS-GSMTSSFN-LSSLKHLYVQKNALSGPIPD 395
                        L+++    +     +L+  +  S    L  L+ L  Q +      P+
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID------PN 212

Query: 396 MLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR----------------FNG 439
              RS     + LR ++++        +LRRL +    +                  FN 
Sbjct: 213 WTSRSDHSSNIKLRIHSIQA-------ELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 440 SIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDL--------------E 485
              SC   +     +  D      +    L    +    +    L              E
Sbjct: 265 ---SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 486 VCKRDMFTSPQQV-------KVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG 538
           V      T+P+++       +    T + ++  N   L  +  ++ S N L    P+E  
Sbjct: 322 VLT----TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI--IESSLNVLE---PAEYR 372

Query: 539 DLQKIRGLNLSHNCLSGSIPRSFSNLQMI-ESLDLSNNRLS---GQIPAQLIE--LNFLS 592
            +                    F  L +   S  +    LS     +    +   +N L 
Sbjct: 373 KM--------------------FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 593 NFNVSYNNLSGLI---PDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSKGRE 649
                      L+   P +   S          +YL      +     E   A+     +
Sbjct: 413 K--------YSLVEKQPKESTISIPS-------IYL------ELKVKLENEYALHRSIVD 451

Query: 650 --------DEDDFVIDMVSLYWSFGASYVTVILG-------------LFAILWINSFWRK 688
                   D DD +   +  Y+    S+    +G             LF +++++     
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYF---YSH----IGHHLKNIEHPERMTLFRMVFLD----- 499

Query: 689 RWFYFIDALI 698
             F F++  I
Sbjct: 500 --FRFLEQKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 71/489 (14%), Positives = 138/489 (28%), Gaps = 132/489 (26%)

Query: 18  LTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSL---TSLEYLDLSYNN- 73
           L +LQ L L     N      H   + +  + +   L   + S      L  L    N  
Sbjct: 199 LEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 74  ----FEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPT 129
               F   C +                     L+ T     T  L      + SL+    
Sbjct: 258 AWNAFNLSCKI---------------------LLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 130 FLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLF---LTNNSFTGNLRLPNTKHDFL 186
            L        L   L+    D P  +L  N +   +    + +    G     N KH   
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD----GLATWDNWKHVNC 352

Query: 187 HHLDASSNNFIGTL-PQDMGTILKKLLVL--DISNNHFEGNIPSSVGEMKELIILHLSKN 243
             L     + +  L P +   +  +L V            +IP+ +     L ++     
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-------HIPTIL-----LSLIW---F 397

Query: 244 NFSEDFSTPFLTGCI--SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEG 301
           +  +      +      SL      ++          +    +E      N+++  +   
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTIS-------IPSIYLELKVKLENEYA--LHRS 448

Query: 302 LLNSTKLYQL-------DISHNFLSG----HIPHWMGNFSNLEILLMSNNCLEGNIPVQL 350
           +++    Y +       D+   +L      HI H + N  + E + +          +  
Sbjct: 449 IVDH---YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL--------FRMVF 497

Query: 351 LNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRG 410
           L+ R L+                     ++H     NA SG I + L          L+ 
Sbjct: 498 LDFRFLE-------------------QKIRHDSTAWNA-SGSILNTL--------QQLK- 528

Query: 411 NNLEGQIPDQICQLRRL--GMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPP 468
              +  I D   +  RL   ++D         I S +T++L+            +++   
Sbjct: 529 -FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR------------IALMAE 575

Query: 469 LGFCYIGTY 477
               +   +
Sbjct: 576 DEAIFEEAH 584

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 51/182 (28%), Positives = 71/182 (39%), Gaps = 17/182 (9%)

Query: 263 LDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGH 321
           LDL  N            LT++  LYL +NK    +  G+      L  L ++ N L   
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-A 99

Query: 322 IPHWMGNF---SNLEILLMSNN---CLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF- 374
           +P   G F    NL  L +  N    L   +   L     L  LS+  N L       F 
Sbjct: 100 LPI--GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK---LTYLSLGYNELQSLPKGVFD 154

Query: 375 NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLS 433
            L+SLK L +  N L   +P+  F   ++L TL L  N L+         L +L M+ L 
Sbjct: 155 KLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 434 HN 435
            N
Sbjct: 214 EN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 50/207 (24%), Positives = 74/207 (35%), Gaps = 33/207 (15%)

Query: 40  LKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNN 99
            K LD+  N+LS   S     LT L  L L+ N       L +L                
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK------LQTLP--------------- 77

Query: 100 MLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDFPSWMLQN 158
                   F     L+ L + +  L  +P  +  Q  +L  L L  N L    P  +  +
Sbjct: 78  -----AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDS 131

Query: 159 NTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS--SNNFIGTLPQDMGTILKKLLVLDI 216
            TKL  L L  N       LP    D L  L      NN +  +P+     L +L  L +
Sbjct: 132 LTKLTYLSLGYNELQ---SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188

Query: 217 SNNHFEGNIPSSVGEMKELIILHLSKN 243
            NN  +     +   +++L +L L +N
Sbjct: 189 DNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 40/208 (19%)

Query: 21  LQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTI-TSLTSLEYLDLSYNNF 74
            + LDL  +      S     L+ L++L ++ N+L  +L + I   L +LE L ++ N  
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK- 96

Query: 75  EGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ 134
                L +L                        F     L  L L    L  +P  +   
Sbjct: 97  -----LQALP--------------------IGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131

Query: 135 -YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLD--A 191
              L YL L  N L    P  +    T L+ L L NN      R+P    D L  L    
Sbjct: 132 LTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK---RVPEGAFDKLTELKTLK 187

Query: 192 SSNNFIGTLPQDMGTILKKLLVLDISNN 219
             NN +  +P+     L+KL +L +  N
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 35/209 (16%)

Query: 136 DLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS--S 193
           D K LDL  N L    PS      TKL +L+L +N       LP      L +L+    +
Sbjct: 38  DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVT 93

Query: 194 NNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV-GEMKELIILHLSKNNFSEDFSTP 252
           +N +  LP  +   L  L  L +  N  + ++P  V   + +L  L L  N         
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ------ 146

Query: 253 FLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQL 311
                       L    F          LT ++ L L NN+   ++ EG  +  T+L  L
Sbjct: 147 -----------SLPKGVFDK--------LTSLKELRLYNNQLK-RVPEGAFDKLTELKTL 186

Query: 312 DISHNFLSGHIPHWMGNFSNLEILLMSNN 340
            + +N L         +   L++L +  N
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 53/197 (26%), Positives = 80/197 (40%), Gaps = 24/197 (12%)

Query: 224 NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL--NL 281
           NIP+          L L  N  S   S  F      L  L L+DN    Q     +   L
Sbjct: 34  NIPAD------TKKLDLQSNKLSSLPSKAF-HRLTKLRLLYLNDNKL--QTLPAGIFKEL 84

Query: 282 TQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGHIPHWMGNF---SNLEILLM 337
             +E L++ +NK    +  G+ +    L +L +  N L   +P     F   + L  L +
Sbjct: 85  KNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSL 140

Query: 338 SNNCLEGNIPVQLLNHRT-LKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPD 395
             N L+ ++P  + +  T LK L +  N L      +F  L+ LK L +  N L   +P+
Sbjct: 141 GYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPE 198

Query: 396 MLFRS-SKLMTLDLRGN 411
             F S  KL  L L+ N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 27/168 (16%), Positives = 57/168 (33%), Gaps = 13/168 (7%)

Query: 15  LANLTILQVLDLSGSS---------SNCLKYLSHLKVLDISHNQLSG----SLSSTITSL 61
           + +   ++ L +  SS             ++ + L+VL+    + +      L +   + 
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219

Query: 62  TSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELAN 121
            SL  + +              A + +       + +  +  K  N +   +L  L L+ 
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 122 CSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTN 169
              N +P        ++ LDL    L  +    ++Q    LEVL   N
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 6e-06
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 532 NVPSEIGDLQKIRGLNLSHNCLSGSIPR-SFSNLQMIESLDLSNNRLSGQIPAQ-LIELN 589
           +    +   + +  L + +      +       L  + +L +  + L   +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 590 FLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLC 626
            LS  N+S+N L  L     Q  +  E    GN   C
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 6/74 (8%)

Query: 7  NLYIFLTGLANLTILQVLDLSGS------SSNCLKYLSHLKVLDISHNQLSGSLSSTITS 60
               L  L     L  L +             L+ L  L+ L I  + L          
Sbjct: 19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 61 LTSLEYLDLSYNNF 74
             L  L+LS+N  
Sbjct: 79 TPRLSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 522 LDLSCNELTGNVPSE-IGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ 580
           L +   +   ++    +  L ++R L +  + L    P +F     +  L+LS N L   
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94

Query: 581 IPAQLIELNFLSNFNVSYNNL 601
           +  + ++   L    +S N L
Sbjct: 95  LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 18/109 (16%)

Query: 121 NCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN--------SF 172
                     L    +L  L +     +       L+   +L  L +  +        +F
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 173 TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHF 221
                 P      L  L+ S N  + +L       L  L  L +S N  
Sbjct: 77  HF---TPR-----LSRLNLSFNA-LESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 280 NLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS 338
               +  LY+EN +    +E   L    +L  L I  + L    P        L  L +S
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 339 NNCLEGNIPVQLLNHRTLKLLSVSENYL 366
            N LE ++  + +   +L+ L +S N L
Sbjct: 89  FNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 4/108 (3%)

Query: 163 EVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE 222
            +    + +      LP  ++  L  L   +   +  L       L +L  L I  +   
Sbjct: 12  GLRCTRDGALDSLHHLPGAEN--LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 223 GNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF 270
              P +      L  L+LS N              +SL  L LS N  
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG--LSLQELVLSGNPL 115

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 17/134 (12%)

Query: 263 LDLSDNNFY---GQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFL 318
           + L  N         FS      ++  + L NN+ S ++          L  L +  N +
Sbjct: 37  IRLEQNTIKVIPPGAFS---PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 319 SGHIPHWMGNF---SNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSVSENYLSGSMTSSF 374
           +  +P     F    +L++LL++ N +   + V        L LLS+ +N L      +F
Sbjct: 93  T-ELPK--SLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 375 -NLSSLKHLYVQKN 387
             L +++ +++ +N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 13/115 (11%)

Query: 15  LANLTILQVLDLSGSSSNCLKY--------LSHLKVLDISHNQLSGSLSSTITSLTSLEY 66
            +    L+ +DLS    N +          L  L  L +  N+++    S    L SL+ 
Sbjct: 52  FSPYKKLRRIDLSN---NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108

Query: 67  LDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELAN 121
           L L+ N       + +  +   L +L L   N +  +    F P   ++ + LA 
Sbjct: 109 LLLNANKINC-LRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 16/139 (11%)

Query: 41  KVLDISHNQLSGSLSSTI-TSLTSLEYLDLSYNNFEGPCPLSSLANH-----SKLEVLLL 94
             + +  N +   +     +    L  +DLS N       +S LA         L  L+L
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQ------ISELAPDAFQGLRSLNSLVL 87

Query: 95  SSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLVGDFPS 153
              N +  +    F   F L++L L    +N +        ++L  L L  N L      
Sbjct: 88  YG-NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAK 145

Query: 154 WMLQNNTKLEVLFLTNNSF 172
                   ++ + L  N F
Sbjct: 146 GTFSPLRAIQTMHLAQNPF 164

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 44/257 (17%), Positives = 85/257 (33%), Gaps = 25/257 (9%)

Query: 21  LQVLDLSGS--SSNCLKYLS----HLKVLDISH-NQLS-GSLSSTITSLTSLEYLDLSYN 72
           L+ + L     + +CL+ ++    + KVL +S     S   L++   +  +L+ LDL  +
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166

Query: 73  NFE--GPCPLSSLANH-SKLEVLLLSSTNNMLLVKTENFLPTF-----QLKVLELANC-S 123
           + +      LS   +  + L  L +S   + +   + + L         LK L+L     
Sbjct: 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEV---SFSALERLVTRCPNLKSLKLNRAVP 223

Query: 124 LNVVPTFLLHQYDLKYLDLSLNNLVGDFPSW-----MLQNNTKLEVLFLTNNSFTGNLRL 178
           L  + T L     L+ L             +      L    +L  L    ++    L  
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283

Query: 179 PNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIIL 238
             +    L  L+ S           +     KL  L + +   +  +       K+L  L
Sbjct: 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLREL 343

Query: 239 HLSKNNFSEDFSTPFLT 255
            +  +          LT
Sbjct: 344 RVFPSEPFVMEPNVALT 360

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 41/172 (23%)

Query: 224 NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF----YGQFFSKDL 279
           +IP    E      L L+ N F+   +T        L  ++ S+N       G F     
Sbjct: 29  HIPQYTAE------LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF----E 78

Query: 280 NLTQMEFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS 338
             + +  + L +N+    ++  +      L  L +  N ++  + +   +F  L      
Sbjct: 79  GASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGN--DSFIGL------ 128

Query: 339 NNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNAL 389
                           +++LLS+ +N ++     +F  L SL  L +  N  
Sbjct: 129 ---------------SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	700
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.98
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.15
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.98
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.99

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.4e-76  Score=677.01  Aligned_cols=619  Identities=32%  Similarity=0.443  Sum_probs=374.0

Q ss_pred             hhccCCCCCCEEEeC-----ccCCc--cccCCCCCCEEECCCCcCCcccchhc-cCCCCCCEEeCCCCcCCCCCChhh--
Q 043317           13 TGLANLTILQVLDLS-----GSSSN--CLKYLSHLKVLDISHNQLSGSLSSTI-TSLTSLEYLDLSYNNFEGPCPLSS--   82 (700)
Q Consensus        13 ~~~~~l~~L~~L~Ls-----g~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~--   82 (700)
                      ..|+++++|++|+|+     |.+|.  .++++++|++|+|++|.+++..|..+ .++++|++|++++|++++..+...  
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  173 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL  173 (768)
T ss_dssp             CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred             hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence            445555555555555     22344  45555555555555555554444433 455555555555555543333111  


Q ss_pred             ccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCC-cChhhcCCCCCCEEEccCCCCCccCchHHhhcCCC
Q 043317           83 LANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNV-VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTK  161 (700)
Q Consensus        83 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  161 (700)
                      +.++++|++|++++|...+..+   +..+++|++|++++|.+.. +|. +.++++|++|++++|.+++.+|..+ ..+++
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~  248 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTE  248 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSS
T ss_pred             hccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCC
Confidence            4455555555555554433222   3566778888888888844 444 7788888888888888887777665 47888


Q ss_pred             CCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEcc
Q 043317          162 LEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLS  241 (700)
Q Consensus       162 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~  241 (700)
                      |++|++++|.+++.+|..  .+++|++|++++|.+.+.+|..++..+++|++|++++|.+++.+|..++++++|++|+++
T Consensus       249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  326 (768)
T 3rgz_A          249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS  326 (768)
T ss_dssp             CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred             CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence            888888888887766554  677777777777777777777766645777777777777777777777777777777777


Q ss_pred             CccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCC-CCcEEEcccCcccc------------------------
Q 043317          242 KNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLT-QMEFLYLENNKFSG------------------------  296 (700)
Q Consensus       242 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~------------------------  296 (700)
                      +|++++.+|...+..+++|++|++++|.+.+..|..+..++ +|+.|++++|++++                        
T Consensus       327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l  406 (768)
T 3rgz_A          327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF  406 (768)
T ss_dssp             SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred             CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence            77777666666556677777777777777666665555444 45555555555544                        


Q ss_pred             --cccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc
Q 043317          297 --KIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF  374 (700)
Q Consensus       297 --~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  374 (700)
                        .+|..+..+++|++|++++|++++.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+++..+..+
T Consensus       407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  486 (768)
T 3rgz_A          407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL  486 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence              444444444555555555555544444445555555555555555544445445455555555555555554444444


Q ss_pred             -CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhh
Q 043317          375 -NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTI  453 (700)
Q Consensus       375 -~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~  453 (700)
                       .+++|++|++++|++++.+|.++..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+.....+..
T Consensus       487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~  566 (768)
T 3rgz_A          487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA  566 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred             hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence             4455555555555555445555555555555555555555455555555555555555555555555544433221110


Q ss_pred             hhccccC-CCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecccc---ccccCccccccceEECCCCcC
Q 043317          454 ENVDLFG-GELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRY---ELYNGSNLNYMVGLDLSCNEL  529 (700)
Q Consensus       454 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~N~l  529 (700)
                        ..... .............................................+..   .......++.|+.|||++|++
T Consensus       567 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l  644 (768)
T 3rgz_A          567 --ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML  644 (768)
T ss_dssp             --CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred             --hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence              00000 000000000000000000000000000000000000000000000000   011124468899999999999


Q ss_pred             cccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCC
Q 043317          530 TGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKG  609 (700)
Q Consensus       530 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~  609 (700)
                      +|.+|..++.+++|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..+..+++|++||+++|+++|.||..+
T Consensus       645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred             cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCccCCCcCCcCcCCCCCCCCCCCCC
Q 043317          610 QYSTFDESSYRGNLYLCGPTINKSCNSAEETP  641 (700)
Q Consensus       610 ~~~~~~~~~~~gn~~lcg~~~~~~c~~~~~~~  641 (700)
                      +|.+++..+|.||+++||.|+. .|.......
T Consensus       725 ~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~  755 (768)
T 3rgz_A          725 QFETFPPAKFLNNPGLCGYPLP-RCDPSNADG  755 (768)
T ss_dssp             SGGGSCGGGGCSCTEEESTTSC-CCCSCC---
T ss_pred             hhccCCHHHhcCCchhcCCCCc-CCCCCccCC
Confidence            9999999999999999999987 897655443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.4e-67  Score=602.24  Aligned_cols=604  Identities=29%  Similarity=0.375  Sum_probs=488.4

Q ss_pred             hhchhccCCCCCCEEEeCcc----CCccccCCCCCCEEECCCCcCCcccch--hccCCCCCCEEeCCCCcCCCCCChhhc
Q 043317           10 IFLTGLANLTILQVLDLSGS----SSNCLKYLSHLKVLDISHNQLSGSLSS--TITSLTSLEYLDLSYNNFEGPCPLSSL   83 (700)
Q Consensus        10 ~~p~~~~~l~~L~~L~Lsg~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~   83 (700)
                      .+|.++.++++|+.++++.+    +|+.++.+++|++|||++|.+++.+|.  .++++++|++|++++|.+.+.+|...+
T Consensus        68 ~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  147 (768)
T 3rgz_A           68 AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG  147 (768)
T ss_dssp             HHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSC
T ss_pred             ccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHh
Confidence            37889999999999999933    458899999999999999999998888  999999999999999999988886556


Q ss_pred             cCCCCCcEEEcccCccccccccC--CCCCCCcccEEEeeCCCCC-CcChhhcCCCCCCEEEccCCCCCccCchHHhhcCC
Q 043317           84 ANHSKLEVLLLSSTNNMLLVKTE--NFLPTFQLKVLELANCSLN-VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNT  160 (700)
Q Consensus        84 ~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  160 (700)
                      .++++|++|++++|.+.+..+..  .+.++++|++|++++|.+. ..|.  ..+++|++|++++|.+++.+|.  +.+++
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~--l~~l~  223 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF--LGDCS  223 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB--CTTCC
T ss_pred             ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc--cccCC
Confidence            89999999999999876655432  1678899999999999994 4443  7899999999999999987877  56999


Q ss_pred             CCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCC-CCCcEEE
Q 043317          161 KLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM-KELIILH  239 (700)
Q Consensus       161 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l-~~L~~L~  239 (700)
                      +|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..   .+++|++|++++|.+++.+|..+... ++|++|+
T Consensus       224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~  300 (768)
T 3rgz_A          224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD  300 (768)
T ss_dssp             SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred             CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence            9999999999999999999999999999999999999888875   47899999999999999999988875 9999999


Q ss_pred             ccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccc-cCCCCCCcEEEcccCcccccccccccCCC-CCcEEEcccCc
Q 043317          240 LSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSK-DLNLTQMEFLYLENNKFSGKIEEGLLNST-KLYQLDISHNF  317 (700)
Q Consensus       240 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~n~  317 (700)
                      +++|++++.+|..+ ..+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+..++ +|++|++++|+
T Consensus       301 Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~  379 (768)
T 3rgz_A          301 LSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN  379 (768)
T ss_dssp             CCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred             CcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence            99999998888776 67999999999999999877765 89999999999999999999999988887 89999999998


Q ss_pred             CCCCcchhhcC--CCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcc
Q 043317          318 LSGHIPHWMGN--FSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIP  394 (700)
Q Consensus       318 l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~  394 (700)
                      +++.+|..+..  +++|++|++++|.+++.+|..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++.+|
T Consensus       380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  459 (768)
T 3rgz_A          380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP  459 (768)
T ss_dssp             EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence            88777777766  7788888888888888888888888888888888888888777777 78888888888888888888


Q ss_pred             hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccc
Q 043317          395 DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYI  474 (700)
Q Consensus       395 ~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  474 (700)
                      ..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..++.++.  ++.+++.++.+....|..+..+
T Consensus       460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~l~~l  537 (768)
T 3rgz_A          460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN--LAILKLSNNSFSGNIPAELGDC  537 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT--CCEEECCSSCCEEECCGGGGGC
T ss_pred             HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC--CCEEECCCCcccCcCCHHHcCC
Confidence            88888888888888888888888888888888888888888888888888777653  3456666666653333222222


Q ss_pred             ccc---cccccccc-cccccCCCC--------cccceEEEeeccccc----------------cccCccccccceEECCC
Q 043317          475 GTY---YNSTLDLE-VCKRDMFTS--------PQQVKVEFVTKNRYE----------------LYNGSNLNYMVGLDLSC  526 (700)
Q Consensus       475 ~~~---~~~~~~~~-~~~~~~~~~--------~~~l~~~~~~~~~~~----------------~~~~~~l~~L~~L~Ls~  526 (700)
                      ...   ......+. ..+...+..        .......+.......                ......+..+..++++.
T Consensus       538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  617 (768)
T 3rgz_A          538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS  617 (768)
T ss_dssp             TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred             CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence            111   11111111 001111110        011122222211110                00112244556678888


Q ss_pred             CcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317          527 NELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP  606 (700)
Q Consensus       527 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  606 (700)
                      |.+.|.+|..++.+++|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.+|..++.+++|++|||++|+++|.+|
T Consensus       618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred             ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCCCcCCCccCCCc
Q 043317          607 DK-GQYSTFDESSYRGNL  623 (700)
Q Consensus       607 ~~-~~~~~~~~~~~~gn~  623 (700)
                      .. ..+..+......+|.
T Consensus       698 ~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          698 QAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             GGGGGCCCCSEEECCSSE
T ss_pred             hHHhCCCCCCEEECcCCc
Confidence            73 333334444444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.7e-58  Score=522.99  Aligned_cols=572  Identities=19%  Similarity=0.164  Sum_probs=387.9

Q ss_pred             chhhhchhccCCCCCCEEEeCcc-----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChh
Q 043317            7 NLYIFLTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS   81 (700)
Q Consensus         7 ~~~~~p~~~~~l~~L~~L~Lsg~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   81 (700)
                      .++.+|..+.  +++++|+|+++     .+..|.++++|++|+|++|.+++..|..|+++++|++|++++|+++ .+|..
T Consensus        15 ~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~   91 (680)
T 1ziw_A           15 KLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDK   91 (680)
T ss_dssp             CCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTT
T ss_pred             CccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChh
Confidence            4566777665  79999999954     3456999999999999999999999999999999999999999998 56656


Q ss_pred             hccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCC-CcChhhcCCCCCCEEEccCCCCCccCchHHh-hcC
Q 043317           82 SLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLN-VVPTFLLHQYDLKYLDLSLNNLVGDFPSWML-QNN  159 (700)
Q Consensus        82 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~-~~l  159 (700)
                      .|+++++|++|++++|.+ ..++...|.++++|++|++++|.+. ..|..+.++++|++|++++|.+++..+..+. ..+
T Consensus        92 ~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  170 (680)
T 1ziw_A           92 TFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN  170 (680)
T ss_dssp             TTTTCTTCSEEECCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred             hhccCCCCCEEECCCCcc-CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence            799999999999999875 4566667999999999999999994 4566788999999999999999855554432 256


Q ss_pred             CCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHh--hccCCcEEEccCCcCCccCCccccCCCC--C
Q 043317          160 TKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGT--ILKKLLVLDISNNHFEGNIPSSVGEMKE--L  235 (700)
Q Consensus       160 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~--L  235 (700)
                      ++|++|++++|.+++..+..+..+.+|+.++++++.+.+.....+..  ..++|++|++++|.+.+..|.++.+++.  |
T Consensus       171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L  250 (680)
T 1ziw_A          171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL  250 (680)
T ss_dssp             CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred             ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence            89999999999999888888888888888888777765332222221  1256777777777777777777776644  7


Q ss_pred             cEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccc-----ccc----ccccCCC
Q 043317          236 IILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSG-----KIE----EGLLNST  306 (700)
Q Consensus       236 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~~~  306 (700)
                      +.|++++|++++..+..+ ..+++|++|++++|++.+..+..+..+++|+.|++++|...+     .+|    ..+..++
T Consensus       251 ~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~  329 (680)
T 1ziw_A          251 TMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK  329 (680)
T ss_dssp             CEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred             CEEECCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence            777777777766554443 557777777777777777777777777777777777664432     122    2566677


Q ss_pred             CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCccc--chhhccC--CCCCCEEEccCccCcccCCCcc-CCCCCcE
Q 043317          307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGN--IPVQLLN--HRTLKLLSVSENYLSGSMTSSF-NLSSLKH  381 (700)
Q Consensus       307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~  381 (700)
                      +|++|++++|.+++..+..|..+++|++|++++|.+...  ....+..  .++|+.|++++|.+++..+..+ .+++|++
T Consensus       330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  409 (680)
T 1ziw_A          330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV  409 (680)
T ss_dssp             TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence            777777777777777777777777777777777764321  1122222  2467777777777777766666 6777777


Q ss_pred             EEccCCcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccC--CCCCchhhhhhhhhhhhccc
Q 043317          382 LYVQKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN--GSIPSCFTNMLQWTIENVDL  458 (700)
Q Consensus       382 L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~l~~~~~~~  458 (700)
                      |++++|++++.+| ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.  +..|..+..+..  ++.+++
T Consensus       410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~--L~~L~L  487 (680)
T 1ziw_A          410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN--LTILDL  487 (680)
T ss_dssp             EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT--CCEEEC
T ss_pred             EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCC--CCEEEC
Confidence            7777777765444 56667777777777777777666677777777777777777765  455666655543  234445


Q ss_pred             cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccc-----------cCccccccceEECCCC
Q 043317          459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELY-----------NGSNLNYMVGLDLSCN  527 (700)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~l~~L~~L~Ls~N  527 (700)
                      .++.+..+++..+                     ..++.++...+..+.....           ....+++|+.|+|++|
T Consensus       488 s~N~l~~i~~~~~---------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          488 SNNNIANINDDML---------------------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             CSSCCCCCCTTTT---------------------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             CCCCCCcCChhhh---------------------ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence            5555544433211                     1111222222222222111           0123455556666666


Q ss_pred             cCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCccccc-CCCCCCeEeccCCcCcccCC
Q 043317          528 ELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLI-ELNFLSNFNVSYNNLSGLIP  606 (700)
Q Consensus       528 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p  606 (700)
                      +++...+..|+++++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.+..+
T Consensus       547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            66543334455566666666666666655555555566666666666666655555554 45556666666666654443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2e-56  Score=509.55  Aligned_cols=579  Identities=22%  Similarity=0.223  Sum_probs=469.8

Q ss_pred             CEEEeCc----cCCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccC
Q 043317           22 QVLDLSG----SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST   97 (700)
Q Consensus        22 ~~L~Lsg----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n   97 (700)
                      +.+++++    .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|++++..| ..++++++|++|++++|
T Consensus         7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSS
T ss_pred             CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCC
Confidence            4567763    3666554  799999999999999888899999999999999999986555 68999999999999988


Q ss_pred             ccccccccCCCCCCCcccEEEeeCCCCCCcC-hhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccC
Q 043317           98 NNMLLVKTENFLPTFQLKVLELANCSLNVVP-TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL  176 (700)
Q Consensus        98 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  176 (700)
                      .+. .++...|.++++|++|++++|+++.+| ..+.++++|++|++++|.+++..|..+ .++++|++|++++|.+++..
T Consensus        84 ~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A           84 ELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALK  161 (680)
T ss_dssp             CCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBC
T ss_pred             ccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh-cccccCCEEEccCCcccccC
Confidence            654 566667999999999999999997776 578899999999999999986656554 58999999999999998766


Q ss_pred             CCCCC--CCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCcccc---CCCCCcEEEccCccCCCCCch
Q 043317          177 RLPNT--KHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVG---EMKELIILHLSKNNFSEDFST  251 (700)
Q Consensus       177 ~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~  251 (700)
                      +..+.  .+++|++|++++|.+.+..|..+.. +++|+.++++++.+.......+.   ..++|+.|++++|.+.+..+.
T Consensus       162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~  240 (680)
T 1ziw_A          162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT  240 (680)
T ss_dssp             HHHHGGGTTCEESEEECTTCCCCCBCTTGGGG-SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred             HHHhhccccccccEEECCCCcccccChhhhhh-hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence            55443  5688999999999998665655544 78999999999887633222221   347899999999999887766


Q ss_pred             HHHhcCC--cCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCC-----Ccch
Q 043317          252 PFLTGCI--SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSG-----HIPH  324 (700)
Q Consensus       252 ~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~~  324 (700)
                      .+ .+++  +|++|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|...+     .+|.
T Consensus       241 ~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~  319 (680)
T 1ziw_A          241 TF-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK  319 (680)
T ss_dssp             TT-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred             Hh-hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccc
Confidence            55 4454  49999999999999988999999999999999999999999999999999999999886553     2332


Q ss_pred             ----hhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcc--cCCCcc---CCCCCcEEEccCCcCccCcch
Q 043317          325 ----WMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG--SMTSSF---NLSSLKHLYVQKNALSGPIPD  395 (700)
Q Consensus       325 ----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~---~l~~L~~L~l~~n~l~~~~~~  395 (700)
                          .|..+++|++|++++|.+.+..+..+.++++|++|++++|.+..  .....+   ..++|+.|++++|++++..|.
T Consensus       320 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~  399 (680)
T 1ziw_A          320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD  399 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred             cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence                68889999999999999999888899999999999999998543  333333   346899999999999988899


Q ss_pred             hhhCCCCccEEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccc
Q 043317          396 MLFRSSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYI  474 (700)
Q Consensus       396 ~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  474 (700)
                      .+..+++|++|++++|++++.+| ..+..+++|++|++++|++.+..+..|..++.+  +.+++.++.+....       
T Consensus       400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L--~~L~l~~n~l~~~~-------  470 (680)
T 1ziw_A          400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL--QRLMLRRVALKNVD-------  470 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC--CEEECTTSCCBCTT-------
T ss_pred             hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccc--ccchhccccccccc-------
Confidence            99999999999999999987665 688999999999999999998888888776533  33444444432111       


Q ss_pred             ccccccccccccccccCCCCcccceEEEeeccccccccC---ccccccceEECCCCcCcccCC--------ccccCcCCC
Q 043317          475 GTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNG---SNLNYMVGLDLSCNELTGNVP--------SEIGDLQKI  543 (700)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L  543 (700)
                                  .....+..++.++...+..+.+.....   ..+++|+.|++++|.+++..+        ..++++++|
T Consensus       471 ------------~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L  538 (680)
T 1ziw_A          471 ------------SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL  538 (680)
T ss_dssp             ------------CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred             ------------cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence                        011234556667777777777665543   457889999999999986422        347899999


Q ss_pred             cEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCC--CCCCcCCCccCC
Q 043317          544 RGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKG--QYSTFDESSYRG  621 (700)
Q Consensus       544 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~--~~~~~~~~~~~g  621 (700)
                      ++|+|++|+++...+..|+++++|+.|||++|++++..+..|..+++|+.|++++|++++.+|...  .+..+....+.|
T Consensus       539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred             CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence            999999999996666689999999999999999998888889999999999999999998877521  345555566777


Q ss_pred             CcCCcCc
Q 043317          622 NLYLCGP  628 (700)
Q Consensus       622 n~~lcg~  628 (700)
                      ||+.|.+
T Consensus       619 N~~~c~c  625 (680)
T 1ziw_A          619 NPFDCTC  625 (680)
T ss_dssp             CCCCBCC
T ss_pred             CCcccCC
Confidence            7777763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-56  Score=520.31  Aligned_cols=549  Identities=19%  Similarity=0.151  Sum_probs=368.6

Q ss_pred             chhhhchhccCCCCCCEEEeCcc-----CCccccCCCCCCEEECCCCcCCccc-chhccCCCCCCEEeCCCCcCCCCCCh
Q 043317            7 NLYIFLTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSL-SSTITSLTSLEYLDLSYNNFEGPCPL   80 (700)
Q Consensus         7 ~~~~~p~~~~~l~~L~~L~Lsg~-----~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~   80 (700)
                      +++.+|.   -.++|++|+|+++     .+..|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|++++..| 
T Consensus        15 ~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-   90 (844)
T 3j0a_A           15 NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-   90 (844)
T ss_dssp             CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-
T ss_pred             CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-
Confidence            4555665   4577888888844     4677888888888888888655444 7778888888888888888875444 


Q ss_pred             hhccCCCCCcEEEcccCcccccccc-CCCCCCCcccEEEeeCCCCCCc--ChhhcCCCCCCEEEccCCCCCccCchHHhh
Q 043317           81 SSLANHSKLEVLLLSSTNNMLLVKT-ENFLPTFQLKVLELANCSLNVV--PTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ  157 (700)
Q Consensus        81 ~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~--p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~  157 (700)
                      ..|.++++|++|++++|.....++. ..+.++++|++|++++|.+..+  +..+.++++|++|++++|.+++..+..+. 
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-  169 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-  169 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-
Confidence            6788888888888888776654433 3477888888888888888544  34677888888888888888766665543 


Q ss_pred             cC--CCCCEEEccCCcCcccCCCCCCCCCC------ccEEeCCCCcCccccChhHHhhc--cCCcEEEccCCc-------
Q 043317          158 NN--TKLEVLFLTNNSFTGNLRLPNTKHDF------LHHLDASSNNFIGTLPQDMGTIL--KKLLVLDISNNH-------  220 (700)
Q Consensus       158 ~l--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~-------  220 (700)
                      .+  ++|+.|++++|.+.+..+..+..+..      |+.|++++|.+.+.++..+...+  .+++.+.++.+.       
T Consensus       170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~  249 (844)
T 3j0a_A          170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF  249 (844)
T ss_dssp             HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred             cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence            44  78888888888888777766665554      88888888877777776665432  356777766332       


Q ss_pred             --CCccCCccccCC--CCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccc
Q 043317          221 --FEGNIPSSVGEM--KELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSG  296 (700)
Q Consensus       221 --i~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  296 (700)
                        +....+..|..+  ++|+.|++++|.+.+..+..+ ..+++|+.|++++|++.+..+..+..+++|++|++++|++++
T Consensus       250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  328 (844)
T 3j0a_A          250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE  328 (844)
T ss_dssp             SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS-SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred             cccCCCChhhhhccccCCccEEECCCCcccccChhhh-hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc
Confidence              222223333333  456666666666655443332 456666666666666666666666666666666666666666


Q ss_pred             cccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCC
Q 043317          297 KIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNL  376 (700)
Q Consensus       297 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l  376 (700)
                      ..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++ +    ..+++|+.|++++|+++..+..   .
T Consensus       329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~~l~~~---~  400 (844)
T 3j0a_A          329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLVTLPKI---N  400 (844)
T ss_dssp             CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCCCCCCC---C
T ss_pred             cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCccccccc---c
Confidence            656666666666666666666665555566666666666666666653 1    2255666666666666644322   3


Q ss_pred             CCCcEEEccCCcCccCc-chhhhCCCCccEEECcCCcccccCCh-hhhccCCCCEEecCCCccCCCCCchhhhhhhhhhh
Q 043317          377 SSLKHLYVQKNALSGPI-PDMLFRSSKLMTLDLRGNNLEGQIPD-QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIE  454 (700)
Q Consensus       377 ~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~  454 (700)
                      .+++.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....       
T Consensus       401 ~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~-------  473 (844)
T 3j0a_A          401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW-------  473 (844)
T ss_dssp             TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS-------
T ss_pred             cccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch-------
Confidence            45666666666665421 22334566666666666666643332 2344566666666666665322211000       


Q ss_pred             hccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCC
Q 043317          455 NVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVP  534 (700)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  534 (700)
                                                                              .....+++|+.|+|++|++++.+|
T Consensus       474 --------------------------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~  497 (844)
T 3j0a_A          474 --------------------------------------------------------DVFEGLSHLQVLYLNHNYLNSLPP  497 (844)
T ss_dssp             --------------------------------------------------------SCSSCBCCEECCCCCHHHHTTCCT
T ss_pred             --------------------------------------------------------hhhcCcccccEEECCCCcccccCh
Confidence                                                                    001235788899999999999999


Q ss_pred             ccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCCCc
Q 043317          535 SEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTF  614 (700)
Q Consensus       535 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~  614 (700)
                      ..|..+++|++|+|++|++++..|..+.  ++|+.|||++|++++.+|..|   .+|+.+++++|++.+.++. .+|..|
T Consensus       498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~-~~f~~~  571 (844)
T 3j0a_A          498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL-STFINW  571 (844)
T ss_dssp             TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC-CSHHHH
T ss_pred             hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc-HHHHHH
Confidence            9999999999999999999987777776  899999999999999998776   4788999999999876553 233222


Q ss_pred             CCCccCCCcCCcCcCCCCCCCCCCCCC
Q 043317          615 DESSYRGNLYLCGPTINKSCNSAEETP  641 (700)
Q Consensus       615 ~~~~~~gn~~lcg~~~~~~c~~~~~~~  641 (700)
                         ...++..+||.+....|..+....
T Consensus       572 ---~~~~~~~~~~~~~~~~C~~p~~~~  595 (844)
T 3j0a_A          572 ---LNHTNVTIAGPPADIYCVYPDSFS  595 (844)
T ss_dssp             ---HHHTTTTTCCCGGGCCCSSCSSSC
T ss_pred             ---HHhcCcccccccccCccCCchhhC
Confidence               224566778887778887665543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.5e-55  Score=493.78  Aligned_cols=519  Identities=21%  Similarity=0.168  Sum_probs=423.5

Q ss_pred             chhhhchhccCCCCCCEEEeCcc-----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChh
Q 043317            7 NLYIFLTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS   81 (700)
Q Consensus         7 ~~~~~p~~~~~l~~L~~L~Lsg~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   81 (700)
                      .++.+|..+..  ++++|+|+++     .|.+|+++++|++|+|++|++++..|.+|.++++|++|++++|++++..| .
T Consensus        23 ~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~   99 (606)
T 3t6q_A           23 GLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-T   99 (606)
T ss_dssp             CCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-T
T ss_pred             CcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-h
Confidence            34567776654  7899999954     46788999999999999999998889999999999999999999985545 6


Q ss_pred             hccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcC-hhhcCCCCCCEEEccCCCCCccCchHHhhcCC
Q 043317           82 SLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP-TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNT  160 (700)
Q Consensus        82 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  160 (700)
                      .++++++|++|++++|.+.. ++...+..+++|++|++++|++..++ ..+..+++|++|++++|.+++..|.. +..++
T Consensus       100 ~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~  177 (606)
T 3t6q_A          100 ALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQ  177 (606)
T ss_dssp             TTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH-HHTTT
T ss_pred             hhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh-hhhhc
Confidence            78999999999999887543 44456888999999999999996652 33445899999999999998444444 46899


Q ss_pred             CCC--EEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCC-----ccCCccccCCC
Q 043317          161 KLE--VLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE-----GNIPSSVGEMK  233 (700)
Q Consensus       161 ~L~--~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~l~~l~  233 (700)
                      +|+  .|++++|.+++..+..+.. ..|+.|++++|.   .++..+.. +.+++...+....+.     ...+..+..+.
T Consensus       178 ~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~-l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~  252 (606)
T 3t6q_A          178 QATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKG-LKNSTIQSLWLGTFEDMDDEDISPAVFEGLC  252 (606)
T ss_dssp             TCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHH-TTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred             ccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhh-ccccchhheechhhccccccccChhHhchhh
Confidence            999  8999999998877766544 689999999886   33333333 455444433332222     12233333333


Q ss_pred             --CCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEE
Q 043317          234 --ELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQL  311 (700)
Q Consensus       234 --~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  311 (700)
                        +|+.|++++|.+++..+. .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..+..+++|++|
T Consensus       253 ~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          253 EMSVESINLQKHYFFNISSN-TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL  330 (606)
T ss_dssp             GSEEEEEECTTCCCSSCCTT-TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred             cCceeEEEeecCccCccCHH-HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence              789999999999765544 3467899999999999987 566778889999999999999998888889999999999


Q ss_pred             EcccCcCCCCcch-hhcCCCCCcEEEcccCcCcccc--hhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCC
Q 043317          312 DISHNFLSGHIPH-WMGNFSNLEILLMSNNCLEGNI--PVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKN  387 (700)
Q Consensus       312 ~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n  387 (700)
                      ++++|.+.+.+|. .+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+++..+..+ .+++|++|++++|
T Consensus       331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence            9999998865554 5888999999999999998766  7788899999999999999998888877 7899999999999


Q ss_pred             cCccCcch-hhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCC-C--chhhhhhhhhhhhccccCCCc
Q 043317          388 ALSGPIPD-MLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSI-P--SCFTNMLQWTIENVDLFGGEL  463 (700)
Q Consensus       388 ~l~~~~~~-~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p--~~~~~l~~l~~~~~~~~~~~~  463 (700)
                      ++++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++.. |  ..+                  
T Consensus       411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------------------  472 (606)
T 3t6q_A          411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL------------------  472 (606)
T ss_dssp             CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG------------------
T ss_pred             cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh------------------
Confidence            99876654 4888999999999999999888888999999999999999987521 1  112                  


Q ss_pred             cCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCC
Q 043317          464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKI  543 (700)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  543 (700)
                                                                        ..+++|+.|++++|.+++..|..|+.+++|
T Consensus       473 --------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  502 (606)
T 3t6q_A          473 --------------------------------------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMM  502 (606)
T ss_dssp             --------------------------------------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             --------------------------------------------------ccCCCccEEECCCCccCccChhhhccccCC
Confidence                                                              225789999999999999999999999999


Q ss_pred             cEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317          544 RGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP  606 (700)
Q Consensus       544 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  606 (700)
                      ++|+|++|++++..|..+++++.| .|++++|++++.+|..+..+++|+++++++|++++.++
T Consensus       503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999999999999999 99999999999999999999999999999999997655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.9e-55  Score=494.71  Aligned_cols=524  Identities=22%  Similarity=0.241  Sum_probs=427.2

Q ss_pred             EEEeCc----cCCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCc
Q 043317           23 VLDLSG----SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTN   98 (700)
Q Consensus        23 ~L~Lsg----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~   98 (700)
                      .++.++    .+|..+.  +++++|+|++|.+++..|.+|.++++|++|++++|++++..| ..|.++++|++|++++|.
T Consensus        16 ~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~   92 (606)
T 3t6q_A           16 TYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANP   92 (606)
T ss_dssp             EEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCC
T ss_pred             eEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCCCCc
Confidence            556652    3565554  478999999999998889999999999999999999985444 678999999999999887


Q ss_pred             cccccccCCCCCCCcccEEEeeCCCCCCc-ChhhcCCCCCCEEEccCCCCCcc-CchHHhhcCCCCCEEEccCCcCcccC
Q 043317           99 NMLLVKTENFLPTFQLKVLELANCSLNVV-PTFLLHQYDLKYLDLSLNNLVGD-FPSWMLQNNTKLEVLFLTNNSFTGNL  176 (700)
Q Consensus        99 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~  176 (700)
                      ... +.+..|.++++|++|++++|+++.+ |..+..+++|++|++++|.+++. +|. ++ .+++|++|++++|.+++..
T Consensus        93 l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~-~l~~L~~L~L~~n~l~~~~  169 (606)
T 3t6q_A           93 LIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GF-PTEKLKVLDFQNNAIHYLS  169 (606)
T ss_dssp             CSE-ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TC-CCTTCCEEECCSSCCCEEC
T ss_pred             ccc-cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-cc-CCcccCEEEcccCcccccC
Confidence            654 4445788899999999999999776 56678889999999999999852 243 33 5889999999999988777


Q ss_pred             CCCCCCCCCcc--EEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCC----CCc
Q 043317          177 RLPNTKHDFLH--HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSE----DFS  250 (700)
Q Consensus       177 ~~~~~~~~~L~--~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~  250 (700)
                      +..+..+++|+  .|++++|.+.+..|.. +. ..+|++|++++|.   ..+..+..+.+++...+....+.+    .++
T Consensus       170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~-~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~  244 (606)
T 3t6q_A          170 KEDMSSLQQATNLSLNLNGNDIAGIEPGA-FD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS  244 (606)
T ss_dssp             HHHHHTTTTCCSEEEECTTCCCCEECTTT-TT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred             hhhhhhhcccceeEEecCCCccCccChhH-hh-hccccccccCCch---hHHHHhhhccccchhheechhhccccccccC
Confidence            77778888888  8899999888654443 44 3578899998886   334455556555544443332221    222


Q ss_pred             hHHHhcCC--cCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcC
Q 043317          251 TPFLTGCI--SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGN  328 (700)
Q Consensus       251 ~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  328 (700)
                      ...+.++.  +|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..|..+..
T Consensus       245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  323 (606)
T 3t6q_A          245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN  323 (606)
T ss_dssp             GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred             hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhc
Confidence            33333343  7999999999999988888999999999999999998 67888999999999999999999888889999


Q ss_pred             CCCCcEEEcccCcCcccchh-hccCCCCCCEEEccCccCcccC--CCcc-CCCCCcEEEccCCcCccCcchhhhCCCCcc
Q 043317          329 FSNLEILLMSNNCLEGNIPV-QLLNHRTLKLLSVSENYLSGSM--TSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLM  404 (700)
Q Consensus       329 l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  404 (700)
                      +++|++|++++|.+.+.++. .+..+++|++|++++|.+++..  +..+ .+++|++|++++|++++..|..+..+++|+
T Consensus       324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  403 (606)
T 3t6q_A          324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE  403 (606)
T ss_dssp             CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred             cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence            99999999999999866655 4889999999999999998876  5555 899999999999999988889999999999


Q ss_pred             EEECcCCcccccCCh-hhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccc
Q 043317          405 TLDLRGNNLEGQIPD-QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLD  483 (700)
Q Consensus       405 ~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (700)
                      +|++++|++++..+. .+..+++|++|++++|++.+..|..+..                                    
T Consensus       404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------  447 (606)
T 3t6q_A          404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG------------------------------------  447 (606)
T ss_dssp             EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT------------------------------------
T ss_pred             eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC------------------------------------
Confidence            999999999877654 4889999999999999998777666544                                    


Q ss_pred             cccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCccc---CCccccCcCCCcEEeCCCccCccccCcc
Q 043317          484 LEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGN---VPSEIGDLQKIRGLNLSHNCLSGSIPRS  560 (700)
Q Consensus       484 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  560 (700)
                                                      +++|+.|++++|.+++.   .+..++.+++|++|++++|++++..|..
T Consensus       448 --------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  495 (606)
T 3t6q_A          448 --------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA  495 (606)
T ss_dssp             --------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred             --------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence                                            37889999999999872   3467999999999999999999999999


Q ss_pred             cccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCC-CCCCCcCCCccCCCcCCcC
Q 043317          561 FSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK-GQYSTFDESSYRGNLYLCG  627 (700)
Q Consensus       561 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~gn~~lcg  627 (700)
                      |+++++|+.|||++|++++.+|..+..++.| +|++++|++++.+|.. ..+..+....+.||++.|.
T Consensus       496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            9999999999999999999999999999999 9999999999888752 3333444455566665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-54  Score=487.33  Aligned_cols=517  Identities=21%  Similarity=0.166  Sum_probs=408.5

Q ss_pred             chhhhchhccCCCCCCEEEeCcc-----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChh
Q 043317            7 NLYIFLTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS   81 (700)
Q Consensus         7 ~~~~~p~~~~~l~~L~~L~Lsg~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   81 (700)
                      .++.+|..+.  ++|++|+|+++     .+..|.++++|++|+|++|.+++..|.+|.++++|++|++++|++++..| .
T Consensus        22 ~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~   98 (606)
T 3vq2_A           22 KLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-G   98 (606)
T ss_dssp             CCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-T
T ss_pred             CcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-h
Confidence            3556676654  78888998854     34578888999999999998888888888889999999999998885545 6


Q ss_pred             hccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCC--CcChhhcCCCCCCEEEccCCCCCccCchHHhhcC
Q 043317           82 SLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLN--VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNN  159 (700)
Q Consensus        82 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l  159 (700)
                      .|+++++|++|++++|... .++...+..+++|++|++++|.+.  .+|..+.++++|++|++++|++++..|..+ +.+
T Consensus        99 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l  176 (606)
T 3vq2_A           99 SFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFL  176 (606)
T ss_dssp             SSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHH
T ss_pred             hcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh-hhh
Confidence            7888899999999887654 344446888888999999999885  578888888899999999998885444433 344


Q ss_pred             CC----CCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCc------cCCccc
Q 043317          160 TK----LEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG------NIPSSV  229 (700)
Q Consensus       160 ~~----L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~------~~~~~l  229 (700)
                      ++    +++|++++|.+++..+..+... +|+.|++++|.+.+.........++.++.+++..+.+.+      ..+..+
T Consensus       177 ~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~  255 (606)
T 3vq2_A          177 RENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM  255 (606)
T ss_dssp             HHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred             hccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence            44    4488899988886665555544 888899988887644444444457888888776554432      111222


Q ss_pred             cCCC--CCcEEEc-cCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCC
Q 043317          230 GEMK--ELIILHL-SKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNST  306 (700)
Q Consensus       230 ~~l~--~L~~L~L-~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  306 (700)
                      ..+.  .++.+++ ..+.+.+..+.  +..+++|+.|++++|.+....  .+..+++|++|++++|.+ +.+| .+ .++
T Consensus       256 ~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~  328 (606)
T 3vq2_A          256 EGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLP  328 (606)
T ss_dssp             TTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCS
T ss_pred             hhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-cccc-cC-CCC
Confidence            2222  3566666 66777776665  567899999999999986543  778889999999999999 4667 44 889


Q ss_pred             CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCccc--chhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEc
Q 043317          307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGN--IPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYV  384 (700)
Q Consensus       307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l  384 (700)
                      +|++|++++|+..+..  .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+++.+.....+++|++|++
T Consensus       329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l  406 (606)
T 3vq2_A          329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF  406 (606)
T ss_dssp             SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEEC
T ss_pred             ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeEC
Confidence            9999999999655333  577889999999999998865  377888999999999999998886644448899999999


Q ss_pred             cCCcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCC-CCchhhhhhhhhhhhccccCCC
Q 043317          385 QKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGS-IPSCFTNMLQWTIENVDLFGGE  462 (700)
Q Consensus       385 ~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~~~~~~~~~  462 (700)
                      ++|++.+..| ..+..+++|++|++++|++++..|..+..+++|++|++++|++++. +|..+..               
T Consensus       407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------------  471 (606)
T 3vq2_A          407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN---------------  471 (606)
T ss_dssp             TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------
T ss_pred             CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc---------------
Confidence            9999987777 6788899999999999999988888999999999999999998763 4544433               


Q ss_pred             ccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCC
Q 043317          463 LSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQK  542 (700)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  542 (700)
                                                                           +++|+.|++++|.+++..|..++.+++
T Consensus       472 -----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~  498 (606)
T 3vq2_A          472 -----------------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHR  498 (606)
T ss_dssp             -----------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             -----------------------------------------------------CCCCCEEECCCCcCCccChhhhccccc
Confidence                                                                 478899999999999999999999999


Q ss_pred             CcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCC-CCCeEeccCCcCcccCCC
Q 043317          543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN-FLSNFNVSYNNLSGLIPD  607 (700)
Q Consensus       543 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~  607 (700)
                      |++|++++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +|++|++++|++.+..+.
T Consensus       499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999999999999988999999999999999999999 6677788887 599999999999976664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.9e-54  Score=497.73  Aligned_cols=516  Identities=21%  Similarity=0.224  Sum_probs=437.7

Q ss_pred             CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCC
Q 043317           30 SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFL  109 (700)
Q Consensus        30 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  109 (700)
                      +|.   -.++|++|||++|.+++..|..|.++++|++|++++|...+.++...|.++++|++|+|++|.+.. +.+..|.
T Consensus        19 vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~   94 (844)
T 3j0a_A           19 VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQ   94 (844)
T ss_dssp             CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSC
T ss_pred             CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHcc
Confidence            555   568999999999999999999999999999999999977767766889999999999999987654 4455799


Q ss_pred             CCCcccEEEeeCCCCC-CcChh--hcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCC--C
Q 043317          110 PTFQLKVLELANCSLN-VVPTF--LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKH--D  184 (700)
Q Consensus       110 ~~~~L~~L~L~~n~l~-~~p~~--l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~  184 (700)
                      ++++|++|+|++|.+. .+|..  +.++++|++|++++|.+++..+...+.++++|++|++++|.+++..+..+..+  +
T Consensus        95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~  174 (844)
T 3j0a_A           95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK  174 (844)
T ss_dssp             SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred             CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence            9999999999999995 45654  88999999999999999866565556799999999999999998888887766  8


Q ss_pred             CccEEeCCCCcCccccChhHHhhcc------CCcEEEccCCcCCccCCccccCC---CCCcEEEccCcc---------CC
Q 043317          185 FLHHLDASSNNFIGTLPQDMGTILK------KLLVLDISNNHFEGNIPSSVGEM---KELIILHLSKNN---------FS  246 (700)
Q Consensus       185 ~L~~L~l~~n~l~~~~~~~~~~~l~------~L~~L~L~~n~i~~~~~~~l~~l---~~L~~L~L~~n~---------l~  246 (700)
                      +|+.|++++|.+.+..|..+.. ++      .|++|++++|.+.+..+..+...   .+++.+.++.+.         +.
T Consensus       175 ~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~  253 (844)
T 3j0a_A          175 TLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK  253 (844)
T ss_dssp             SSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred             ccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence            9999999999999877766543 23      49999999999988888777654   578888887432         22


Q ss_pred             CCCchHHHhc--CCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcch
Q 043317          247 EDFSTPFLTG--CISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPH  324 (700)
Q Consensus       247 ~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  324 (700)
                      +..... +.+  .++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..|.
T Consensus       254 ~~~~~~-f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  332 (844)
T 3j0a_A          254 DPDQNT-FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS  332 (844)
T ss_dssp             TGGGTT-TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred             CCChhh-hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence            222222 233  37899999999999999999999999999999999999999899999999999999999999988899


Q ss_pred             hhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCcc
Q 043317          325 WMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLM  404 (700)
Q Consensus       325 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  404 (700)
                      .|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++...    +++|+.|++++|+++ .+|..   ..+++
T Consensus       333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l~~~---~~~l~  404 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TLPKI---NLTAN  404 (844)
T ss_dssp             SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CCCCC---CTTCC
T ss_pred             HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-ccccc---ccccc
Confidence            99999999999999999998888889999999999999999986543    789999999999998 45543   56899


Q ss_pred             EEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccc
Q 043317          405 TLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLD  483 (700)
Q Consensus       405 ~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (700)
                      .|++++|++++... ..+..+++|+.|++++|++++..+....                                     
T Consensus       405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------------------  447 (844)
T 3j0a_A          405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-------------------------------------  447 (844)
T ss_dssp             EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-------------------------------------
T ss_pred             eeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc-------------------------------------
Confidence            99999999986432 3456899999999999999854332110                                     


Q ss_pred             cccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCc-----ccCCccccCcCCCcEEeCCCccCccccC
Q 043317          484 LEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELT-----GNVPSEIGDLQKIRGLNLSHNCLSGSIP  558 (700)
Q Consensus       484 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  558 (700)
                                                    ..+++|+.|++++|.++     +..+..|.++++|++|+|++|++++.+|
T Consensus       448 ------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  497 (844)
T 3j0a_A          448 ------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP  497 (844)
T ss_dssp             ------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT
T ss_pred             ------------------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh
Confidence                                          11477899999999997     4556779999999999999999999999


Q ss_pred             cccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCCCcCCCccCCCcCCcCcCC
Q 043317          559 RSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTI  630 (700)
Q Consensus       559 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lcg~~~  630 (700)
                      ..|.++++|+.|+|++|++++..|..+.  ++|+.|++++|++++.+|..  +..+....+.||++.|.++.
T Consensus       498 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          498 GVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             TSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             hHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            9999999999999999999988887776  89999999999999999864  45666667888998887653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.7e-53  Score=477.30  Aligned_cols=525  Identities=19%  Similarity=0.165  Sum_probs=432.8

Q ss_pred             CCEEEeCcc----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEccc
Q 043317           21 LQVLDLSGS----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS   96 (700)
Q Consensus        21 L~~L~Lsg~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~   96 (700)
                      -++++.++.    +|..+.  +++++|+|++|.+++..+..|.++++|++|++++|++++..| ..|.++++|++|++++
T Consensus        13 ~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~   89 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTG   89 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTT
T ss_pred             CCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCC
Confidence            356777743    566554  899999999999998888899999999999999999985444 6799999999999998


Q ss_pred             CccccccccCCCCCCCcccEEEeeCCCCCCcC-hhhcCCCCCCEEEccCCCCCc-cCchHHhhcCCCCCEEEccCCcCcc
Q 043317           97 TNNMLLVKTENFLPTFQLKVLELANCSLNVVP-TFLLHQYDLKYLDLSLNNLVG-DFPSWMLQNNTKLEVLFLTNNSFTG  174 (700)
Q Consensus        97 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~  174 (700)
                      |.+. .+.+..|.++++|++|++++|.+..++ ..+.++++|++|++++|.+.+ .+|..+ .++++|++|++++|.+++
T Consensus        90 n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           90 NPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCE
T ss_pred             Cccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCccee
Confidence            8754 444557999999999999999997666 678899999999999999985 567766 489999999999999998


Q ss_pred             cCCCCCCCCCCcc----EEeCCCCcCccccChhHHhhccCCcEEEccCCcCC-ccCCccccCCCCCcEEEccCccCCCC-
Q 043317          175 NLRLPNTKHDFLH----HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE-GNIPSSVGEMKELIILHLSKNNFSED-  248 (700)
Q Consensus       175 ~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~~-  248 (700)
                      ..+..+..+.+|+    ++++++|.+. .++...+.. .+|++|++++|.+. +..|..+.+++.|+.+++..+.+.+. 
T Consensus       168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  245 (606)
T 3vq2_A          168 ITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER  245 (606)
T ss_dssp             ECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             cChhhhhhhhccccccceeeccCCCcc-eeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence            8888777666554    8999999987 566666663 48999999999887 46677889999999988876554431 


Q ss_pred             ----CchHHHhcCC--cCcEEEc-CCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCC
Q 043317          249 ----FSTPFLTGCI--SLWFLDL-SDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH  321 (700)
Q Consensus       249 ----~~~~~~~~~~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~  321 (700)
                          .+...+.++.  .++.+++ ..+.+.+..+. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.
T Consensus       246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~  321 (606)
T 3vq2_A          246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQ  321 (606)
T ss_dssp             CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SS
T ss_pred             cccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cc
Confidence                2222222232  4667777 77778877776 8889999999999999974 45 788899999999999999 57


Q ss_pred             cchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccC--CCcc-CCCCCcEEEccCCcCccCcchhhh
Q 043317          322 IPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM--TSSF-NLSSLKHLYVQKNALSGPIPDMLF  398 (700)
Q Consensus       322 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~  398 (700)
                      +|. + .+++|++|++++|...+..  .+..+++|++|++++|.+++..  +..+ .+++|++|++++|.+++ +|..+.
T Consensus       322 lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~  396 (606)
T 3vq2_A          322 FPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM  396 (606)
T ss_dssp             CCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred             ccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc
Confidence            774 4 8999999999999665444  5778999999999999998773  4444 88999999999999884 668888


Q ss_pred             CCCCccEEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccc
Q 043317          399 RSSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTY  477 (700)
Q Consensus       399 ~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (700)
                      .+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+..                              
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------  446 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG------------------------------  446 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------------
T ss_pred             CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC------------------------------
Confidence            99999999999999998777 68899999999999999998777766544                              


Q ss_pred             cccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcc-cCCccccCcCCCcEEeCCCccCccc
Q 043317          478 YNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG-NVPSEIGDLQKIRGLNLSHNCLSGS  556 (700)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~  556 (700)
                                                            +++|+.|++++|.+++ .+|..++.+++|++|++++|++++.
T Consensus       447 --------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  488 (606)
T 3vq2_A          447 --------------------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI  488 (606)
T ss_dssp             --------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             --------------------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence                                                  3788999999999998 4799999999999999999999999


Q ss_pred             cCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCC-CcCCCccCCCcCCcCcC
Q 043317          557 IPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYS-TFDESSYRGNLYLCGPT  629 (700)
Q Consensus       557 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~~~~~~~gn~~lcg~~  629 (700)
                      .|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++...+....+. .+....+.+|++.|.++
T Consensus       489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            99999999999999999999999999999999999999999999995433322222 24445667777777543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.5e-49  Score=439.16  Aligned_cols=504  Identities=20%  Similarity=0.198  Sum_probs=398.7

Q ss_pred             CEEEeCc----cCCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccC
Q 043317           22 QVLDLSG----SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST   97 (700)
Q Consensus        22 ~~L~Lsg----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n   97 (700)
                      ++.+.++    .+|..+  .+++++|+|++|.+++..+.+|.++++|++|++++|++++ ++...|.++++|++|++++|
T Consensus        10 ~~~~c~~~~l~~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A           10 ITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             TEEECCSSCCSSCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTC
T ss_pred             cEEEeCCCCccccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCC
Confidence            3455552    255544  3589999999999998888899999999999999999984 45477999999999999987


Q ss_pred             ccccccccCCCCCCCcccEEEeeCCCCCCcCh-hhcCCCCCCEEEccCCCCCc-cCchHHhhcCCCCCEEEccCCcCccc
Q 043317           98 NNMLLVKTENFLPTFQLKVLELANCSLNVVPT-FLLHQYDLKYLDLSLNNLVG-DFPSWMLQNNTKLEVLFLTNNSFTGN  175 (700)
Q Consensus        98 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~-~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~  175 (700)
                      .. ..+++..|.++++|++|++++|+++.+|. .+..+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++.
T Consensus        87 ~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A           87 PI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CC-CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEE
T ss_pred             cC-CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCcccee
Confidence            74 44555678999999999999999987765 58889999999999999985 467765 4899999999999999877


Q ss_pred             CCCCCCCCCCc----cEEeCCCCcCccccChhHHhhccCCcEEEccCCcCC-ccCCccccCCCCCcEEEccCccCCC---
Q 043317          176 LRLPNTKHDFL----HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE-GNIPSSVGEMKELIILHLSKNNFSE---  247 (700)
Q Consensus       176 ~~~~~~~~~~L----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~l~~l~~L~~L~L~~n~l~~---  247 (700)
                      .+..+..+.+|    +.+++++|.+.+..| ..+.. .+|+.|++++|... ...+..+..++.++.+.+....+..   
T Consensus       165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~  242 (570)
T 2z63_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN  242 (570)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred             cHHHccchhccchhhhhcccCCCCceecCH-HHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence            77777777777    788999988875444 44442 37888888887543 2345566777777776665433221   


Q ss_pred             --CCchHHHhcCC--cCcEEEcCCc-ccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCc
Q 043317          248 --DFSTPFLTGCI--SLWFLDLSDN-NFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHI  322 (700)
Q Consensus       248 --~~~~~~~~~~~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  322 (700)
                        .++...+.+++  .++.++++++ .+.+..+..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+
T Consensus       243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l  319 (570)
T 2z63_A          243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QF  319 (570)
T ss_dssp             CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SC
T ss_pred             hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-cc
Confidence              11222222333  3566777777 677777788888889999999999888 467777777 8999999999888 45


Q ss_pred             chhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccC--CCcc-CCCCCcEEEccCCcCccCcchhhhC
Q 043317          323 PHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM--TSSF-NLSSLKHLYVQKNALSGPIPDMLFR  399 (700)
Q Consensus       323 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~  399 (700)
                      |.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+ .+++|++|++++|++++..+. +..
T Consensus       320 ~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~  394 (570)
T 2z63_A          320 PT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG  394 (570)
T ss_dssp             CB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET
T ss_pred             Cc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccc
Confidence            54  4678899999999888765554  67888999999999888764  3334 788899999999988754444 888


Q ss_pred             CCCccEEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccc
Q 043317          400 SSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYY  478 (700)
Q Consensus       400 ~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (700)
                      +++|++|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+.+                               
T Consensus       395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------  443 (570)
T 2z63_A          395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------------  443 (570)
T ss_dssp             CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------------
T ss_pred             cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc-------------------------------
Confidence            8899999999998887655 46788889999999999887766655543                               


Q ss_pred             ccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCc-ccCCccccCcCCCcEEeCCCccCcccc
Q 043317          479 NSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELT-GNVPSEIGDLQKIRGLNLSHNCLSGSI  557 (700)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~  557 (700)
                                                           +++|+.|++++|.++ +.+|..++.+++|++|++++|++++..
T Consensus       444 -------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  486 (570)
T 2z63_A          444 -------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS  486 (570)
T ss_dssp             -------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred             -------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC
Confidence                                                 377889999999998 578999999999999999999999888


Q ss_pred             CcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCC
Q 043317          558 PRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK  608 (700)
Q Consensus       558 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  608 (700)
                      |..|+++++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus       487 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            999999999999999999999998889999999999999999999988864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-48  Score=433.10  Aligned_cols=495  Identities=22%  Similarity=0.200  Sum_probs=408.3

Q ss_pred             chhhhchhccCCCCCCEEEeCcc-----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChh
Q 043317            7 NLYIFLTGLANLTILQVLDLSGS-----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS   81 (700)
Q Consensus         7 ~~~~~p~~~~~l~~L~~L~Lsg~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   81 (700)
                      .++.+|..+.  +++++|+|+++     .+.+|.++++|++|+|++|++++..+.+|.++++|++|++++|++++ ++..
T Consensus        18 ~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~   94 (570)
T 2z63_A           18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALG   94 (570)
T ss_dssp             CCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTT
T ss_pred             CccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHh
Confidence            4556776553  57999999955     35678999999999999999998888999999999999999999985 4547


Q ss_pred             hccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCC--cChhhcCCCCCCEEEccCCCCCccCchHHhhcC
Q 043317           82 SLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNV--VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNN  159 (700)
Q Consensus        82 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l  159 (700)
                      .|.++++|++|++++|... .++...+..+++|++|++++|.+..  +|..+.++++|++|++++|++++..+.. +..+
T Consensus        95 ~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l  172 (570)
T 2z63_A           95 AFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVL  172 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHH
T ss_pred             hhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH-ccch
Confidence            8999999999999998754 4454468899999999999999964  7999999999999999999998544444 4577


Q ss_pred             CCC----CEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCC------ccCCccc
Q 043317          160 TKL----EVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE------GNIPSSV  229 (700)
Q Consensus       160 ~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~l  229 (700)
                      ++|    +.+++++|.+++..+..+... +|+.|++++|.............++.++...+....+.      ......+
T Consensus       173 ~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~  251 (570)
T 2z63_A          173 HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL  251 (570)
T ss_dssp             HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred             hccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence            777    899999999998888777766 89999999986443222233334677776665433222      1122233


Q ss_pred             cCCC--CCcEEEccCc-cCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCC
Q 043317          230 GEMK--ELIILHLSKN-NFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNST  306 (700)
Q Consensus       230 ~~l~--~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  306 (700)
                      ..++  .++.++++++ .+.+..+..+ ..+++|++|++++|.+.+ ++..+..+ +|++|++++|.+. .+|.  ..++
T Consensus       252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~  325 (570)
T 2z63_A          252 EGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLK  325 (570)
T ss_dssp             GGGGGSEEEEEEEEETTEEESCSTTTT-GGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCS
T ss_pred             ccccccchhhhhhhcchhhhhhchhhh-cCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--cccc
Confidence            3333  3567778777 6666565554 668999999999999975 66777777 9999999999998 4454  4678


Q ss_pred             CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccc--hhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEc
Q 043317          307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI--PVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYV  384 (700)
Q Consensus       307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l  384 (700)
                      +|+.|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+++..+....+++|++|++
T Consensus       326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l  403 (570)
T 2z63_A          326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF  403 (570)
T ss_dssp             SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred             ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEc
Confidence            999999999998876654  78899999999999998654  77889999999999999999988777338999999999


Q ss_pred             cCCcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccC-CCCCchhhhhhhhhhhhccccCCC
Q 043317          385 QKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN-GSIPSCFTNMLQWTIENVDLFGGE  462 (700)
Q Consensus       385 ~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~~~~~~~~~  462 (700)
                      ++|.+.+..+ ..+..+++|++|++++|++.+..|..+..+++|++|++++|+++ +.+|..+..               
T Consensus       404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~---------------  468 (570)
T 2z63_A          404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---------------  468 (570)
T ss_dssp             TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------
T ss_pred             cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc---------------
Confidence            9999987666 57888999999999999999999999999999999999999987 455544433               


Q ss_pred             ccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCC
Q 043317          463 LSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQK  542 (700)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  542 (700)
                                                                           +++|+.|++++|++++..|..++.+++
T Consensus       469 -----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          469 -----------------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             -----------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             -----------------------------------------------------ccCCCEEECCCCccccCChhhhhcccC
Confidence                                                                 478999999999999999999999999


Q ss_pred             CcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcc
Q 043317          543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPA  583 (700)
Q Consensus       543 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  583 (700)
                      |++|++++|++++.+|..|+++++|+.|++++|++++..|.
T Consensus       496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999998889999999999999999999988764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.1e-48  Score=432.18  Aligned_cols=480  Identities=17%  Similarity=0.187  Sum_probs=350.6

Q ss_pred             CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCC
Q 043317           30 SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFL  109 (700)
Q Consensus        30 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  109 (700)
                      +|..+.  ++|++|+|++|++++..|..|.++++|++|++++|++++. +...|.++++|++|++++|.+.. ++...|.
T Consensus        20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~   95 (549)
T 2z81_A           20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSS-LSSSWFG   95 (549)
T ss_dssp             CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCS-CCHHHHT
T ss_pred             ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCc-cCHHHhc
Confidence            455443  6888888888888887788888888888888888888754 33678888888888888876543 3443577


Q ss_pred             CCCcccEEEeeCCCCC--CcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCcc
Q 043317          110 PTFQLKVLELANCSLN--VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLH  187 (700)
Q Consensus       110 ~~~~L~~L~L~~n~l~--~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  187 (700)
                      ++++|++|++++|.++  .+|..+.++++|++|++++|.+.+.+|...+.++++|++|++++|.+++..|..+..+++|+
T Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  175 (549)
T 2z81_A           96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH  175 (549)
T ss_dssp             TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence            8888888888888885  34667888888999999988855577755556888899999999998888888888888999


Q ss_pred             EEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccC--C-ccccCCCCCcEEEccCccCCCCCchHHH---hcCCcCc
Q 043317          188 HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNI--P-SSVGEMKELIILHLSKNNFSEDFSTPFL---TGCISLW  261 (700)
Q Consensus       188 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~~L~  261 (700)
                      +|++++|.+. .+|..+...+++|++|++++|++.+..  + .....+++|+.|++++|.+++..+..+.   ..+++|+
T Consensus       176 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~  254 (549)
T 2z81_A          176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS  254 (549)
T ss_dssp             EEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred             eEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence            9999888865 667766666788999999999887642  1 2234567788888888877654443322   2345666


Q ss_pred             EEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCC-----cchhhcCCCCCcEEE
Q 043317          262 FLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH-----IPHWMGNFSNLEILL  336 (700)
Q Consensus       262 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~  336 (700)
                      .+++++|.+.+......                  .....+..+.+++.|+++++.+...     .+..+...++|+.|+
T Consensus       255 ~l~l~~~~~~~~~~~~~------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~  316 (549)
T 2z81_A          255 EVEFDDCTLNGLGDFNP------------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT  316 (549)
T ss_dssp             EEEEESCEEECCSCCCC------------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred             ccccccccccccccccc------------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence            66666666544211000                  0011223345555555555544321     122233455677777


Q ss_pred             cccCcCcccchhhc-cCCCCCCEEEccCccCcccCC---Ccc-CCCCCcEEEccCCcCccCcc--hhhhCCCCccEEECc
Q 043317          337 MSNNCLEGNIPVQL-LNHRTLKLLSVSENYLSGSMT---SSF-NLSSLKHLYVQKNALSGPIP--DMLFRSSKLMTLDLR  409 (700)
Q Consensus       337 L~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~---~~~-~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~  409 (700)
                      +++|.+. .+|..+ ..+++|++|++++|.+++..+   ..+ .+++|++|++++|++++..+  ..+..+++|++|+++
T Consensus       317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls  395 (549)
T 2z81_A          317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS  395 (549)
T ss_dssp             EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred             eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence            7777776 445444 457777777777777776542   223 67888889999988875432  457889999999999


Q ss_pred             CCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccc
Q 043317          410 GNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKR  489 (700)
Q Consensus       410 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (700)
                      +|+++ .+|..+..+++|++|++++|++++ +|..+                                            
T Consensus       396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--------------------------------------------  429 (549)
T 2z81_A          396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--------------------------------------------  429 (549)
T ss_dssp             TCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--------------------------------------------
T ss_pred             CCCCc-cCChhhcccccccEEECCCCCccc-ccchh--------------------------------------------
Confidence            99998 678888889999999999999862 22211                                            


Q ss_pred             cCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCE
Q 043317          490 DMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIES  569 (700)
Q Consensus       490 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  569 (700)
                                                .++|+.||+++|++++.+    +.+++|++|+|++|+++ .+|. .+.+++|+.
T Consensus       430 --------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~  477 (549)
T 2z81_A          430 --------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLV  477 (549)
T ss_dssp             --------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCE
T ss_pred             --------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCE
Confidence                                      256888999999998653    57899999999999999 6776 578999999


Q ss_pred             EeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCC
Q 043317          570 LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQY  611 (700)
Q Consensus       570 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  611 (700)
                      |||++|++++.+|..+..+++|++|++++|+++|.+|...++
T Consensus       478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l  519 (549)
T 2z81_A          478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  519 (549)
T ss_dssp             EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred             EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHH
Confidence            999999999999999999999999999999999887753333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.5e-49  Score=444.25  Aligned_cols=379  Identities=20%  Similarity=0.186  Sum_probs=213.5

Q ss_pred             CCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcC------CC------CCChhhccCCCCCcEEEcccCcccccccc
Q 043317           38 SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNF------EG------PCPLSSLANHSKLEVLLLSSTNNMLLVKT  105 (700)
Q Consensus        38 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l------~~------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  105 (700)
                      .+++.|+|++|.++|.+|.+++++++|++|+|++|.+      .+      .+|...   +..|+ ++++.+.....++.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence            5899999999999999999999999999999999976      22      223211   33444 55554443333322


Q ss_pred             CCCC-CCC------------------cccEEEee--CCCCCCcChhhcCCCCCCEEEccCCCCCcc--------------
Q 043317          106 ENFL-PTF------------------QLKVLELA--NCSLNVVPTFLLHQYDLKYLDLSLNNLVGD--------------  150 (700)
Q Consensus       106 ~~~~-~~~------------------~L~~L~L~--~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~--------------  150 (700)
                      . +. .+.                  .++.+.+.  .|+++.+|..++++++|++|+|++|.+++.              
T Consensus       157 ~-~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          157 D-FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             G-SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             h-HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence            1 11 011                  11111111  345544777777777777777777777653              


Q ss_pred             ---CchHHh-hcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCc-Ccc-ccChhHHhh-----ccCCcEEEccCC
Q 043317          151 ---FPSWML-QNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN-FIG-TLPQDMGTI-----LKKLLVLDISNN  219 (700)
Q Consensus       151 ---~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~~-----l~~L~~L~L~~n  219 (700)
                         +|..+. .++++|++|++++|.+.+.+|..+..+++|++|++++|+ +++ .+|..++..     +++|++|++++|
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence               565541 256677777777777777777677777777777777776 666 666666551     256666666666


Q ss_pred             cCCccCCc--cccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCC-CcEEEcccCcccc
Q 043317          220 HFEGNIPS--SVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ-MEFLYLENNKFSG  296 (700)
Q Consensus       220 ~i~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~  296 (700)
                      +++ .+|.  .++++++|+.|++++|++++.+| . +..+++|++|++++|.+. .+|..+..+++ |++|++++|+++ 
T Consensus       316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            666 5565  66666666666666666655555 2 344556666666666555 44444555555 555555555555 


Q ss_pred             cccccccCCC--CCcEEEcccCcCCCCcchhhc-------CCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCc
Q 043317          297 KIEEGLLNST--KLYQLDISHNFLSGHIPHWMG-------NFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLS  367 (700)
Q Consensus       297 ~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  367 (700)
                      .+|..+...+  +|++|++++|++++..|..+.       .+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            4444444332  455555555555555554444       4444555555555554222222333444444444444444


Q ss_pred             ccCCCccC-CCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhh--ccCCCCEEecCCCccCCCCCch
Q 043317          368 GSMTSSFN-LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQIC--QLRRLGMMDLSHNRFNGSIPSC  444 (700)
Q Consensus       368 ~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~  444 (700)
                      ..+...+. ..                 ..+..+++|++|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..
T Consensus       471 ~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~  531 (636)
T 4eco_A          471 EIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ  531 (636)
T ss_dssp             BCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred             CcCHHHhcccc-----------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh
Confidence            33322221 11                 00011126666666666666 4555554  66666666666666654 4444


Q ss_pred             h
Q 043317          445 F  445 (700)
Q Consensus       445 ~  445 (700)
                      +
T Consensus       532 ~  532 (636)
T 4eco_A          532 P  532 (636)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.5e-47  Score=420.27  Aligned_cols=456  Identities=20%  Similarity=0.207  Sum_probs=322.8

Q ss_pred             CEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEee
Q 043317           41 KVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELA  120 (700)
Q Consensus        41 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  120 (700)
                      ++||+++|+++. +|..+.  ++|++|++++|++++ ++...+.++++|++|++++|.... +.+..|.++++|++|+++
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECC
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccc-cChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecC
Confidence            467777777774 455444  777888888887774 343567777777777777665433 333456677777777777


Q ss_pred             CCCCCCcChhhcCCCCCCEEEccCCCCCc-cCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccc
Q 043317          121 NCSLNVVPTFLLHQYDLKYLDLSLNNLVG-DFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGT  199 (700)
Q Consensus       121 ~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  199 (700)
                      +|+++.+|..  .+++|++|++++|.+++ .+|..+ +++++|++|++++|.+++   ..+..                 
T Consensus        78 ~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~-----------------  134 (520)
T 2z7x_B           78 HNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLP-----------------  134 (520)
T ss_dssp             SSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGG-----------------
T ss_pred             CCceeecCcc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCcccch---hhccc-----------------
Confidence            7777766665  66777777777777764 345444 366777777766666543   11222                 


Q ss_pred             cChhHHhhccCC--cEEEccCCcC--CccCCccccCCC-CCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc-----
Q 043317          200 LPQDMGTILKKL--LVLDISNNHF--EGNIPSSVGEMK-ELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN-----  269 (700)
Q Consensus       200 ~~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-----  269 (700)
                              +++|  ++|++++|.+  .+..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|.     
T Consensus       135 --------l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  206 (520)
T 2z7x_B          135 --------IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC  206 (520)
T ss_dssp             --------GTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT
T ss_pred             --------cccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc
Confidence                    3334  5555555555  444444444443 222345555555555554444556666666666664     


Q ss_pred             --cccccccccCCCCCCcEEEcccCccccccccccc---CCCCCcEEEcccCcCCCCcchhh-----cCCCCCcEEEccc
Q 043317          270 --FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLL---NSTKLYQLDISHNFLSGHIPHWM-----GNFSNLEILLMSN  339 (700)
Q Consensus       270 --l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~  339 (700)
                        +.+.++ .+..+++|+.|++++|.+++..+..+.   ..++|++|++++|++++.+|..+     ..+++|+.+++++
T Consensus       207 ~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~  285 (520)
T 2z7x_B          207 SYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS  285 (520)
T ss_dssp             HHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred             ceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence              444444 566677788888877777653322211   24578888888888887788777     7888888888888


Q ss_pred             CcCcccch-hhccCC---CCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccc
Q 043317          340 NCLEGNIP-VQLLNH---RTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG  415 (700)
Q Consensus       340 n~l~~~~~-~~~~~~---~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~  415 (700)
                      |.+  .+| ..+..+   .+|+.|++++|.+...... ..+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus       286 n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  362 (520)
T 2z7x_B          286 DVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP-SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE  362 (520)
T ss_dssp             CCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC-SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB
T ss_pred             cce--ecchhhhhcccccCceeEEEcCCCccccccch-hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc
Confidence            888  344 444433   6789999999888665421 267899999999999998889999999999999999999986


Q ss_pred             --cCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCC
Q 043317          416 --QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFT  493 (700)
Q Consensus       416 --~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (700)
                        .+|..+..+++|++|++++|++++.+|....                                               
T Consensus       363 l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~-----------------------------------------------  395 (520)
T 2z7x_B          363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC-----------------------------------------------  395 (520)
T ss_dssp             HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC-----------------------------------------------
T ss_pred             cccchHHHhhCCCCCEEECCCCcCCcccccchh-----------------------------------------------
Confidence              5567889999999999999999865553210                                               


Q ss_pred             CcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCC
Q 043317          494 SPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS  573 (700)
Q Consensus       494 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  573 (700)
                                          ..++.|+.|++++|.+++..|..+.  ++|++|++++|+++ .+|..+.++++|+.|+++
T Consensus       396 --------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~  452 (520)
T 2z7x_B          396 --------------------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA  452 (520)
T ss_dssp             --------------------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred             --------------------ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence                                1247889999999999988887765  79999999999999 788888899999999999


Q ss_pred             CCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317          574 NNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP  606 (700)
Q Consensus       574 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  606 (700)
                      +|++++..+..+..+++|++|++++|++++.++
T Consensus       453 ~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          453 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            999995444459999999999999999997655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.2e-46  Score=415.99  Aligned_cols=479  Identities=20%  Similarity=0.185  Sum_probs=347.4

Q ss_pred             EEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeC
Q 043317           42 VLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELAN  121 (700)
Q Consensus        42 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~  121 (700)
                      +.|.+++.++. +|..+.  ++|++|++++|++++..| ..+.++                         ++|++|++++
T Consensus         9 ~c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~-~~~~~l-------------------------~~L~~L~Ls~   59 (549)
T 2z81_A            9 VCDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGH-GDLRAC-------------------------ANLQVLILKS   59 (549)
T ss_dssp             EEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECS-STTSSC-------------------------TTCCEEECTT
T ss_pred             eEECCCCcccc-ccccCC--CCccEEECcCCccCccCh-hhhhcC-------------------------CcccEEECCC
Confidence            35666666663 333332  566666666666653322 334444                         4555555555


Q ss_pred             CCCCCcC-hhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcc-cCCCCCCCCCCccEEeCCCCcCccc
Q 043317          122 CSLNVVP-TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTG-NLRLPNTKHDFLHHLDASSNNFIGT  199 (700)
Q Consensus       122 n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~  199 (700)
                      |+++.++ ..+..+++|++|++++|++++ ++...+.++++|++|++++|.+++ ..+..+..+++|++|++++|.+.+.
T Consensus        60 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~  138 (549)
T 2z81_A           60 SRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE  138 (549)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             CCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc
Confidence            5553333 445566666666666666663 333333466667777776666664 2445667777777777777775556


Q ss_pred             cChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccccc---cc
Q 043317          200 LPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF---FS  276 (700)
Q Consensus       200 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~  276 (700)
                      +|...+..+++|++|++++|.+++..|..++.+++|+.|+++.|.+. .++..++..+++|++|++++|++.+..   ..
T Consensus       139 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  217 (549)
T 2z81_A          139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLP  217 (549)
T ss_dssp             ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred             cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccc
Confidence            66544444788889999999888888888888999999999998874 456666667889999999999987753   12


Q ss_pred             ccCCCCCCcEEEcccCcccccccc----cccCCCCCcEEEcccCcCCCCc------chhhcCCCCCcEEEcccCcCccc-
Q 043317          277 KDLNLTQMEFLYLENNKFSGKIEE----GLLNSTKLYQLDISHNFLSGHI------PHWMGNFSNLEILLMSNNCLEGN-  345 (700)
Q Consensus       277 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~-  345 (700)
                      ....+++|+.|++++|.+++..+.    .+..+++|+.+++++|.+.+..      ...+..+++++.|++.++.+... 
T Consensus       218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~  297 (549)
T 2z81_A          218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY  297 (549)
T ss_dssp             SCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred             hhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh
Confidence            334578899999999998865443    3466789999999999876531      12356788999999999887632 


Q ss_pred             ----chhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcch---hhhCCCCccEEECcCCcccccC
Q 043317          346 ----IPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPD---MLFRSSKLMTLDLRGNNLEGQI  417 (700)
Q Consensus       346 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~N~l~~~~  417 (700)
                          .+..+....+|+.|++++|.++..+...+ .+++|++|++++|++++.+|.   .+..+++|++|++++|++++..
T Consensus       298 ~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  377 (549)
T 2z81_A          298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ  377 (549)
T ss_dssp             GSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH
T ss_pred             hcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc
Confidence                12223445789999999999986665555 699999999999999887653   3678899999999999998654


Q ss_pred             C--hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCc
Q 043317          418 P--DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP  495 (700)
Q Consensus       418 ~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (700)
                      +  ..+..+++|++|++++|+++ .+|..+..                                                
T Consensus       378 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------------------------------------  408 (549)
T 2z81_A          378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQW------------------------------------------------  408 (549)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC------------------------------------------------
T ss_pred             cchhhhhcCCCCCEEECCCCCCc-cCChhhcc------------------------------------------------
Confidence            3  56889999999999999998 45543322                                                


Q ss_pred             ccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCC
Q 043317          496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN  575 (700)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  575 (700)
                                          +++|+.|++++|+++ .+|..+.  ++|++|++++|++++.+    +++++|++|||++|
T Consensus       409 --------------------~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N  461 (549)
T 2z81_A          409 --------------------PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRN  461 (549)
T ss_dssp             --------------------CTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSS
T ss_pred             --------------------cccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCC
Confidence                                367899999999998 4454443  68999999999999753    57899999999999


Q ss_pred             cCcccCcccccCCCCCCeEeccCCcCcccCCC-CCCCCCcCCCccCCCcCCcCcC
Q 043317          576 RLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD-KGQYSTFDESSYRGNLYLCGPT  629 (700)
Q Consensus       576 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~-~~~~~~~~~~~~~gn~~lcg~~  629 (700)
                      +++ .+|. ...+++|++|++++|++++.+|. ...+..+......+|++.|.++
T Consensus       462 ~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          462 KLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            999 5675 46799999999999999998886 3445555666777787777644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2e-47  Score=435.08  Aligned_cols=467  Identities=16%  Similarity=0.141  Sum_probs=265.2

Q ss_pred             CCCCEEECCCCcCCcccchhccCCCCCCEEeC-CCCcCCCCCChhhccCCCCCcE-----EEc---------c-cCcccc
Q 043317           38 SHLKVLDISHNQLSGSLSSTITSLTSLEYLDL-SYNNFEGPCPLSSLANHSKLEV-----LLL---------S-STNNML  101 (700)
Q Consensus        38 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~~-----L~l---------~-~n~~~~  101 (700)
                      .+++.|+|++|.+.|.+|.+|++|++|++|+| ++|.+.|..+.........+..     +..         . ..+...
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            68999999999999999999999999999999 8888876644221111000000     000         0 000000


Q ss_pred             cc----------ccCCCCCCCcccEEEeeC--CCCCCcChhhcCCCCCCEEEccCCCCCc-----------------cCc
Q 043317          102 LV----------KTENFLPTFQLKVLELAN--CSLNVVPTFLLHQYDLKYLDLSLNNLVG-----------------DFP  152 (700)
Q Consensus       102 ~~----------~~~~~~~~~~L~~L~L~~--n~l~~~p~~l~~~~~L~~L~Ls~n~l~~-----------------~~~  152 (700)
                      ..          ..........++.+.+..  |+++.+|..+.++++|++|+|++|++++                 .+|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence            00          000001111233333322  5554477777788888888888888876                 256


Q ss_pred             hHH-hhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCc-Ccc-ccChhHHhhcc-------CCcEEEccCCcCC
Q 043317          153 SWM-LQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN-FIG-TLPQDMGTILK-------KLLVLDISNNHFE  222 (700)
Q Consensus       153 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~~l~-------~L~~L~L~~n~i~  222 (700)
                      ..+ |.++++|++|++++|.+.+.+|..+..+++|+.|++++|+ +++ .+|..+.. ++       +|++|++++|.+.
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHCTTTTTTCCEEECCSSCCC
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hhhcccccCCccEEEeeCCcCC
Confidence            554 3366677777777777666666666667777777777776 665 56666554 33       6666666666666


Q ss_pred             ccCCc--cccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCC-CcEEEcccCccccccc
Q 043317          223 GNIPS--SVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ-MEFLYLENNKFSGKIE  299 (700)
Q Consensus       223 ~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~  299 (700)
                       .+|.  .++++++|+.|++++|+++ .+|  .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|+++ .+|
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp  635 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP  635 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence             5555  6666666666666666665 444  2345566666666666665 44555555555 666666666665 445


Q ss_pred             ccccCCCC--CcEEEcccCcCCCCcchhh---c--CCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCC
Q 043317          300 EGLLNSTK--LYQLDISHNFLSGHIPHWM---G--NFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTS  372 (700)
Q Consensus       300 ~~~~~~~~--L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  372 (700)
                      ..+..++.  |+.|++++|++.+.+|...   .  .+++|+.|++++|.++...+..+..+++|+.|++++|.++..+..
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~  715 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN  715 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence            54444432  6666666666655444221   1  223555555555555522222223455555555555555543333


Q ss_pred             ccCC--------CCCcEEEccCCcCccCcchhhh--CCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCC
Q 043317          373 SFNL--------SSLKHLYVQKNALSGPIPDMLF--RSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP  442 (700)
Q Consensus       373 ~~~l--------~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  442 (700)
                      .+..        ++|++|++++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|+.|++++|+      
T Consensus       716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------  787 (876)
T 4ecn_A          716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------  787 (876)
T ss_dssp             SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------
T ss_pred             HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------
Confidence            3311        14444444444444 3344443  44444444444444443 34444444444444444432      


Q ss_pred             chhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceE
Q 043317          443 SCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGL  522 (700)
Q Consensus       443 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L  522 (700)
                                                                                                      
T Consensus       788 --------------------------------------------------------------------------------  787 (876)
T 4ecn_A          788 --------------------------------------------------------------------------------  787 (876)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc
Q 043317          523 DLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS  602 (700)
Q Consensus       523 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  602 (700)
                      ++++|++.+.+|..++.+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.....+..+.+++|++.
T Consensus       788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            1234666677777777777777777777777 46666654  47777777777777666666555555556666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.9e-45  Score=416.28  Aligned_cols=517  Identities=21%  Similarity=0.164  Sum_probs=350.0

Q ss_pred             hhhhchhccCCCCCCEEEeCcc----C-CccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhh
Q 043317            8 LYIFLTGLANLTILQVLDLSGS----S-SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSS   82 (700)
Q Consensus         8 ~~~~p~~~~~l~~L~~L~Lsg~----~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   82 (700)
                      ++.+|..+.  +++++|||+++    + +.+|.++++|++|||++|+|+++.|.+|.++++|++|+|++|+++ .+|...
T Consensus        43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~  119 (635)
T 4g8a_A           43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGA  119 (635)
T ss_dssp             CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGG
T ss_pred             cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHH
Confidence            344454332  35667777743    2 345667777777777777777666666777777777777777766 345456


Q ss_pred             ccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCC--CcChhhcCCCCCCEEEccCCCCCccCchHHhhcCC
Q 043317           83 LANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLN--VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNT  160 (700)
Q Consensus        83 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~  160 (700)
                      |.++++|++|++++|++. .++...|.++++|++|++++|.++  .+|..+..+++|++|++++|++++..+..+ ..+.
T Consensus       120 f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~  197 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLH  197 (635)
T ss_dssp             GTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHH
T ss_pred             hcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc-cchh
Confidence            677777777777666543 344445666677777777777763  345666666777777777777664333332 2322


Q ss_pred             C----CCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcC------CccCCcccc
Q 043317          161 K----LEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHF------EGNIPSSVG  230 (700)
Q Consensus       161 ~----L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~l~  230 (700)
                      +    ...++++.|.+....+..+ ....++.+++.+|.....++...+..+..++...+..+..      .......+.
T Consensus       198 ~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~  276 (635)
T 4g8a_A          198 QMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE  276 (635)
T ss_dssp             TCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred             hhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence            2    3356666666654433332 3334566666666554444444444455555555433221      222233344


Q ss_pred             CCCCCcEEEccCccCCCCCc--hHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCC
Q 043317          231 EMKELIILHLSKNNFSEDFS--TPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKL  308 (700)
Q Consensus       231 ~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  308 (700)
                      .+..+...++..+.......  ...+..+.+++.+++.++.+....  .+.....++.|++.+|.+.+..+.   .+..|
T Consensus       277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L  351 (635)
T 4g8a_A          277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSL  351 (635)
T ss_dssp             GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTC
T ss_pred             cccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhh
Confidence            44455555554443321111  111234567888888887775543  344566788888888887754433   45678


Q ss_pred             cEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcc--cchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccC
Q 043317          309 YQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG--NIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQK  386 (700)
Q Consensus       309 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~  386 (700)
                      +.++++.|.+....  ....+++|+.+++++|.+..  ..+..+..+.+|+.+++..|.+.........+++|+.+++++
T Consensus       352 ~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~  429 (635)
T 4g8a_A          352 KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH  429 (635)
T ss_dssp             CEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTT
T ss_pred             hhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhh
Confidence            88888888776432  34567888999998888753  345566778888999988888877666655888899999888


Q ss_pred             CcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCC-CCCchhhhhhhhhhhhccccCCCcc
Q 043317          387 NALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNG-SIPSCFTNMLQWTIENVDLFGGELS  464 (700)
Q Consensus       387 n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~  464 (700)
                      |......+ ..+..+.+++.++++.|.+.+..+..+..+++++.|++++|++.+ ..|..|.                  
T Consensus       430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~------------------  491 (635)
T 4g8a_A          430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT------------------  491 (635)
T ss_dssp             SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh------------------
Confidence            87765443 456778888999999998888888888888899999998887542 2333332                  


Q ss_pred             CCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCc
Q 043317          465 IFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR  544 (700)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  544 (700)
                                                                        .+++|+.|||++|++++.+|..|+++++|+
T Consensus       492 --------------------------------------------------~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~  521 (635)
T 4g8a_A          492 --------------------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  521 (635)
T ss_dssp             --------------------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             --------------------------------------------------hccccCEEECCCCccCCcChHHHcCCCCCC
Confidence                                                              247889999999999999999999999999


Q ss_pred             EEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCC-CCCCeEeccCCcCcccC
Q 043317          545 GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIEL-NFLSNFNVSYNNLSGLI  605 (700)
Q Consensus       545 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~  605 (700)
                      +|+|++|+|++..|..|+++++|+.|||++|++++.+|..+..+ ++|++|++++|++++..
T Consensus       522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            99999999999999999999999999999999999999999998 68999999999998543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.7e-46  Score=410.13  Aligned_cols=452  Identities=20%  Similarity=0.205  Sum_probs=336.9

Q ss_pred             CEEEeCcc----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccC
Q 043317           22 QVLDLSGS----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST   97 (700)
Q Consensus        22 ~~L~Lsg~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n   97 (700)
                      ++|+++++    +|..+.  ++|++|+|++|.+++..|..|.++++|++|++++|++++..| ..|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCC
Confidence            46788844    666665  899999999999999888999999999999999999985444 68999999999999998


Q ss_pred             ccccccccCCCCCCCcccEEEeeCCCCCC--cChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCC--CEEEccCCcC-
Q 043317           98 NNMLLVKTENFLPTFQLKVLELANCSLNV--VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKL--EVLFLTNNSF-  172 (700)
Q Consensus        98 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~L~~n~l-  172 (700)
                      .+. .++..   .+++|++|++++|.++.  +|..+..+++|++|++++|.+++.    .+..+++|  ++|++++|.+ 
T Consensus        80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~  151 (520)
T 2z7x_B           80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETY  151 (520)
T ss_dssp             CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTT
T ss_pred             cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeeccccc
Confidence            765 56654   78899999999999954  678999999999999999999852    24577888  9999999998 


Q ss_pred             -cccCCCCCCCCC-CccEEeCCCCcCccccChhHHhhccCCcEEEccCCc-------CCccCCccccCCCCCcEEEccCc
Q 043317          173 -TGNLRLPNTKHD-FLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNH-------FEGNIPSSVGEMKELIILHLSKN  243 (700)
Q Consensus       173 -~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------i~~~~~~~l~~l~~L~~L~L~~n  243 (700)
                       .+..|..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.       +.+.+| .++.+++|+.|++++|
T Consensus       152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~  230 (520)
T 2z7x_B          152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI  230 (520)
T ss_dssp             TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred             ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence             666676666554 234566777777666665555556677777777765       444333 4566666666666666


Q ss_pred             cCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccc-----cCCCCCcEEEcccCcC
Q 043317          244 NFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGL-----LNSTKLYQLDISHNFL  318 (700)
Q Consensus       244 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l  318 (700)
                      .+++.....+...                      ...++|++|++++|++++.+|..+     ..+++|+.+++++|.+
T Consensus       231 ~l~~~~~~~~~~~----------------------~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~  288 (520)
T 2z7x_B          231 ETTWNSFIRILQL----------------------VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF  288 (520)
T ss_dssp             EEEHHHHHHHHHH----------------------HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred             ccCHHHHHHHHHH----------------------hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence            6544222211110                      012355555555555555555555     5666677777777766


Q ss_pred             CCCcc-hhhcCC---CCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCcc--
Q 043317          319 SGHIP-HWMGNF---SNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSG--  391 (700)
Q Consensus       319 ~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~--  391 (700)
                        .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|.+++..+..+ .+++|++|++++|++++  
T Consensus       289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  364 (520)
T 2z7x_B          289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS  364 (520)
T ss_dssp             --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred             --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence              233 334333   56777777777765322  12567778888888888877666665 78888888888888876  


Q ss_pred             CcchhhhCCCCccEEECcCCcccccCCh-hhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCc
Q 043317          392 PIPDMLFRSSKLMTLDLRGNNLEGQIPD-QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLG  470 (700)
Q Consensus       392 ~~~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  470 (700)
                      .+|..+..+++|++|++++|++++.+|. .+..+++|+.|++++|++++..|..+                         
T Consensus       365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-------------------------  419 (520)
T 2z7x_B          365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-------------------------  419 (520)
T ss_dssp             HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC-------------------------
T ss_pred             cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh-------------------------
Confidence            5567888999999999999999974555 47888999999999999875443221                         


Q ss_pred             ccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCC
Q 043317          471 FCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSH  550 (700)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  550 (700)
                                                                   .+.|+.|++++|+++ .+|..+..+++|++|++++
T Consensus       420 ---------------------------------------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~  453 (520)
T 2z7x_B          420 ---------------------------------------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVAS  453 (520)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred             ---------------------------------------------cccCCEEECCCCccc-ccchhhhcCCCCCEEECCC
Confidence                                                         156888999999999 7888888999999999999


Q ss_pred             ccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317          551 NCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP  582 (700)
Q Consensus       551 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  582 (700)
                      |++++..+..|..+++|+.|++++|++++..+
T Consensus       454 N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          454 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            99995444459999999999999999997655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.4e-46  Score=421.89  Aligned_cols=238  Identities=18%  Similarity=0.221  Sum_probs=129.6

Q ss_pred             CcCccccChhHHhhccCCcEEEccCCcCCcc-----------------CCcccc--CCCCCcEEEccCccCCCCCchHHH
Q 043317          194 NNFIGTLPQDMGTILKKLLVLDISNNHFEGN-----------------IPSSVG--EMKELIILHLSKNNFSEDFSTPFL  254 (700)
Q Consensus       194 n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~  254 (700)
                      |++++ +|..+.. +++|++|++++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..+ 
T Consensus       193 n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-  269 (636)
T 4eco_A          193 NNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-  269 (636)
T ss_dssp             CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-
T ss_pred             CCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-
Confidence            44444 5555444 55555555555555543                 555555  55555555555555555555443 


Q ss_pred             hcCCcCcEEEcCCcc-ccc-ccccccCCC------CCCcEEEcccCcccccccc--cccCCCCCcEEEcccCcCCCCcch
Q 043317          255 TGCISLWFLDLSDNN-FYG-QFFSKDLNL------TQMEFLYLENNKFSGKIEE--GLLNSTKLYQLDISHNFLSGHIPH  324 (700)
Q Consensus       255 ~~~~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~  324 (700)
                      .++++|++|++++|+ +++ .+|..+..+      ++|++|++++|+++ .+|.  .+..+++|++|++++|+++|.+| 
T Consensus       270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            345555555555555 555 444444443      55556666666555 4454  55555566666666665555555 


Q ss_pred             hhcCCCCCcEEEcccCcCcccchhhccCCCC-CCEEEccCccCcccCCCcc-C--CCCCcEEEccCCcCccCcchhhh--
Q 043317          325 WMGNFSNLEILLMSNNCLEGNIPVQLLNHRT-LKLLSVSENYLSGSMTSSF-N--LSSLKHLYVQKNALSGPIPDMLF--  398 (700)
Q Consensus       325 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~-~--l~~L~~L~l~~n~l~~~~~~~~~--  398 (700)
                      .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++.. +..+ .  +++|++|++++|++++..|..+.  
T Consensus       348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~  425 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL  425 (636)
T ss_dssp             CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred             hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence            5555555666666666555 45555555555 66666666655532 2222 2  23556666666666555555554  


Q ss_pred             -----CCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccC
Q 043317          399 -----RSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       399 -----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  438 (700)
                           .+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus       426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence                 4555666666666655332233344556666666666555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.3e-45  Score=416.77  Aligned_cols=416  Identities=18%  Similarity=0.219  Sum_probs=243.1

Q ss_pred             CcccEEEeeCCCC-CCcChhhcCCCCCCEEEc-cCCCCCccCchHHh---------------------------------
Q 043317          112 FQLKVLELANCSL-NVVPTFLLHQYDLKYLDL-SLNNLVGDFPSWML---------------------------------  156 (700)
Q Consensus       112 ~~L~~L~L~~n~l-~~~p~~l~~~~~L~~L~L-s~n~l~~~~~~~~~---------------------------------  156 (700)
                      .+++.|+|+++++ +.+|..++++++|++|+| ++|.+.|..|....                                 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            3678888888888 678888888888888888 77766544221100                                 


Q ss_pred             -----------------hcCCCCCEEEcc--CCcCcccCCCCCCCCCCccEEeCCCCcCcc-----------------cc
Q 043317          157 -----------------QNNTKLEVLFLT--NNSFTGNLRLPNTKHDFLHHLDASSNNFIG-----------------TL  200 (700)
Q Consensus       157 -----------------~~l~~L~~L~L~--~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----------------~~  200 (700)
                                       .....++.+.+.  .|.+++ +|..+..+++|+.|++++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                             001112222222  244554 55555556666666666666554                 25


Q ss_pred             ChhHH-hhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCcc-CCC-CCchHHHh------cCCcCcEEEcCCcccc
Q 043317          201 PQDMG-TILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNN-FSE-DFSTPFLT------GCISLWFLDLSDNNFY  271 (700)
Q Consensus       201 ~~~~~-~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~------~~~~L~~L~L~~n~l~  271 (700)
                      |..+. ..+++|++|++++|.+.+.+|..++++++|+.|++++|+ +++ .+|..+..      .+++|++|++++|.+.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            55542 125566666666666555666666666666666666665 554 44443321      1235666666666665


Q ss_pred             ccccc--ccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCC-CcEEEcccCcCcccchh
Q 043317          272 GQFFS--KDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSN-LEILLMSNNCLEGNIPV  348 (700)
Q Consensus       272 ~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~  348 (700)
                       .+|.  .+..+++|+.|++++|+++ .+| .+..+++|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .+|.
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~  636 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN  636 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence             4444  5555666666666666655 444 5555566666666666655 55555555555 666666666655 4555


Q ss_pred             hccCCCC--CCEEEccCccCcccCCCcc------CCCCCcEEEccCCcCccCcchhh-hCCCCccEEECcCCcccccCCh
Q 043317          349 QLLNHRT--LKLLSVSENYLSGSMTSSF------NLSSLKHLYVQKNALSGPIPDML-FRSSKLMTLDLRGNNLEGQIPD  419 (700)
Q Consensus       349 ~~~~~~~--L~~L~l~~n~l~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~N~l~~~~~~  419 (700)
                      .+..+..  |+.|++++|.+++.++...      .+++|+.|++++|+++ .+|..+ ..+++|+.|++++|+++ .+|.
T Consensus       637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~  714 (876)
T 4ecn_A          637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE  714 (876)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred             hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence            4444432  6666666666655443221      2345666666666665 333332 35556666666666665 3333


Q ss_pred             hhhc--------cCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccC
Q 043317          420 QICQ--------LRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDM  491 (700)
Q Consensus       420 ~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (700)
                      .+..        +++|+.|+|++|+++ .+|..+..                                            
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~--------------------------------------------  749 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA--------------------------------------------  749 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST--------------------------------------------
T ss_pred             HHhccccccccccCCccEEECCCCCCc-cchHHhhh--------------------------------------------
Confidence            3222        125666666666555 34433320                                            


Q ss_pred             CCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCC------ccCccccCccccccc
Q 043317          492 FTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSH------NCLSGSIPRSFSNLQ  565 (700)
Q Consensus       492 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~  565 (700)
                                            ..+++|+.|+|++|.+++ +|..++.+++|+.|+|++      |++.+.+|..|.+++
T Consensus       750 ----------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~  806 (876)
T 4ecn_A          750 ----------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP  806 (876)
T ss_dssp             ----------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred             ----------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence                                  124677778888888876 677777888888888865      677777888888888


Q ss_pred             CCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317          566 MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP  606 (700)
Q Consensus       566 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  606 (700)
                      +|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+
T Consensus       807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred             CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence            888888888888 56777654  578888888887765443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.3e-44  Score=403.33  Aligned_cols=516  Identities=20%  Similarity=0.171  Sum_probs=371.0

Q ss_pred             CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCC
Q 043317           30 SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFL  109 (700)
Q Consensus        30 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  109 (700)
                      +|..+.  +++++|||++|+|+++.+.+|.++++|++|+|++|+|+ .++..+|.++++|++|+|++|.+ ..++...|.
T Consensus        46 vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~  121 (635)
T 4g8a_A           46 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI-QSLALGAFS  121 (635)
T ss_dssp             CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCC-CEECGGGGT
T ss_pred             cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcC-CCCCHHHhc
Confidence            555442  47999999999999888889999999999999999998 45557899999999999998764 456666788


Q ss_pred             CCCcccEEEeeCCCCCCcCh-hhcCCCCCCEEEccCCCCCcc-CchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCC--
Q 043317          110 PTFQLKVLELANCSLNVVPT-FLLHQYDLKYLDLSLNNLVGD-FPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF--  185 (700)
Q Consensus       110 ~~~~L~~L~L~~n~l~~~p~-~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--  185 (700)
                      ++++|++|++++|+++.+|. .+.++++|++|++++|.+++. +|.. +..+++|++|++++|++++..+..+..+.+  
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~  200 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  200 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhh
Confidence            99999999999999977765 477889999999999998743 4444 458899999999999888776666544333  


Q ss_pred             --ccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCc-cCCccccCCCCCcEEEccCccCCC-----CCchHHHhcC
Q 043317          186 --LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG-NIPSSVGEMKELIILHLSKNNFSE-----DFSTPFLTGC  257 (700)
Q Consensus       186 --L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~  257 (700)
                        ...++++.|.+. .++...+. ...++.+++.+|.... ..+..+..+..++...+..+....     ......+..+
T Consensus       201 ~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~  278 (635)
T 4g8a_A          201 LLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  278 (635)
T ss_dssp             TCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred             hhhhhhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence              346778888776 44544444 3356777777775542 223445666777666554432221     1111112334


Q ss_pred             CcCcEEEcCCccccc---ccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcE
Q 043317          258 ISLWFLDLSDNNFYG---QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEI  334 (700)
Q Consensus       258 ~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  334 (700)
                      ..+...++..+....   .....+....+++.+.+.++.+....  .+.....++.|++++|.+.+..+   ..+..|+.
T Consensus       279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~  353 (635)
T 4g8a_A          279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKR  353 (635)
T ss_dssp             GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCE
T ss_pred             cchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhh
Confidence            455555554433221   22233445667778888877776432  34556778888888887765433   24567778


Q ss_pred             EEcccCcCcccchhhccCCCCCCEEEccCccCcccCCC--cc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCC
Q 043317          335 LLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTS--SF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGN  411 (700)
Q Consensus       335 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N  411 (700)
                      +++.+|.+...  .....+++|+.+++++|.+......  .+ .+.+|+.+++..|.... .+..+..+++|+.++++.|
T Consensus       354 l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~  430 (635)
T 4g8a_A          354 LTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS  430 (635)
T ss_dssp             EEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTS
T ss_pred             cccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhc
Confidence            88888776532  2345677888888888877643322  22 67778888888887763 4555677788888888877


Q ss_pred             cccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccccccc
Q 043317          412 NLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRD  490 (700)
Q Consensus       412 ~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (700)
                      ......+ ..+..+++++.+++++|.+.+..|..+..                                           
T Consensus       431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-------------------------------------------  467 (635)
T 4g8a_A          431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------------------------  467 (635)
T ss_dssp             EEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccc-------------------------------------------
Confidence            7654443 45677888888888888877655544332                                           


Q ss_pred             CCCCcccceEEEeeccccccccCccccccceEECCCCcC-cccCCccccCcCCCcEEeCCCccCccccCcccccccCCCE
Q 043317          491 MFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNEL-TGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIES  569 (700)
Q Consensus       491 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  569 (700)
                                               ++.++.|++++|.+ .+..|..|+.+++|++|+|++|++++.+|..|+++++|++
T Consensus       468 -------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~  522 (635)
T 4g8a_A          468 -------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  522 (635)
T ss_dssp             -------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             -------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence                                     36788999999985 4568899999999999999999999999999999999999


Q ss_pred             EeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCC-CC-CCcCCCccCCCcCCcCc
Q 043317          570 LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKG-QY-STFDESSYRGNLYLCGP  628 (700)
Q Consensus       570 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~~~~~~~~gn~~lcg~  628 (700)
                      |+|++|+|++..|..|..+++|++||+++|++++.+|..- .+ ..+......+||+-|.+
T Consensus       523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            9999999999999999999999999999999999988632 12 34445566777777754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-43  Score=393.25  Aligned_cols=463  Identities=20%  Similarity=0.178  Sum_probs=322.6

Q ss_pred             CCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCccc
Q 043317           36 YLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLK  115 (700)
Q Consensus        36 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  115 (700)
                      .+...+++|+++|++++ +|..+.  ++|++|++++|++++ ++...|.++++|++|++++|.+. .++++.|.++++|+
T Consensus        29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~  103 (562)
T 3a79_B           29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLE  103 (562)
T ss_dssp             ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCC
T ss_pred             ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCC
Confidence            34455899999999985 565553  889999999999984 45467899999999999887654 45555788888999


Q ss_pred             EEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCc-cCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCc--cEEeCC
Q 043317          116 VLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVG-DFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFL--HHLDAS  192 (700)
Q Consensus       116 ~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~l~  192 (700)
                      +|++++|+++.+|..  .+++|++|++++|++++ .+|..+ .++++|++|++++|.+++   ..+..+++|  +.|+++
T Consensus       104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          104 YLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLD  177 (562)
T ss_dssp             EEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEE
T ss_pred             EEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhh-cccCcccEEecCCCcccc---CchhhhhhceeeEEEee
Confidence            999999999888877  78899999999999874 233444 588888888888887763   223333333  555555


Q ss_pred             CCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCC-CCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc--
Q 043317          193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMK-ELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN--  269 (700)
Q Consensus       193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~--  269 (700)
                      +|.+..                       ++..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|.  
T Consensus       178 ~n~l~~-----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  234 (562)
T 3a79_B          178 LVSYHI-----------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN  234 (562)
T ss_dssp             ESSCCC-----------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT
T ss_pred             cccccc-----------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc
Confidence            555400                       333333333332 011234444444443333333344455555555542  


Q ss_pred             ---cccccccccCCCCCCcEEEcccCcccccc----cccccCCCCCcEEEcccCcCCCCcchhh-----cCCCCCcEEEc
Q 043317          270 ---FYGQFFSKDLNLTQMEFLYLENNKFSGKI----EEGLLNSTKLYQLDISHNFLSGHIPHWM-----GNFSNLEILLM  337 (700)
Q Consensus       270 ---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L  337 (700)
                         +.+ ....+..+++|+.++++++.+.+..    +.. ...++|++|++++|.+++.+|..+     ..++.|+.+++
T Consensus       235 ~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~  312 (562)
T 3a79_B          235 CQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV  312 (562)
T ss_dssp             HHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred             cchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence               111 1123445566666666665554321    111 123478888888888877777666     56666666666


Q ss_pred             ccCcCcccch-hhcc---CCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcc
Q 043317          338 SNNCLEGNIP-VQLL---NHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNL  413 (700)
Q Consensus       338 ~~n~l~~~~~-~~~~---~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l  413 (700)
                      ..+.+  .+| ..+.   ...+|+.|++++|.+...... ..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus       313 ~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  389 (562)
T 3a79_B          313 KNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCP-PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL  389 (562)
T ss_dssp             EECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCC-SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC
T ss_pred             cccee--ecChhhhhhhhccCcceEEEccCCCcccccCc-cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc
Confidence            66666  233 2222   235788889988887654321 2678999999999999988899999999999999999999


Q ss_pred             ccc--CChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccC
Q 043317          414 EGQ--IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDM  491 (700)
Q Consensus       414 ~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (700)
                      ++.  +|..+..+++|++|++++|++++.+|....                                             
T Consensus       390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~---------------------------------------------  424 (562)
T 3a79_B          390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC---------------------------------------------  424 (562)
T ss_dssp             CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC---------------------------------------------
T ss_pred             CCcccchhhhcCCCCCCEEECCCCcCCCccChhhh---------------------------------------------
Confidence            863  356788999999999999999875554311                                             


Q ss_pred             CCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEe
Q 043317          492 FTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLD  571 (700)
Q Consensus       492 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  571 (700)
                                            ..++.|+.|++++|.+++.+|..+.  ++|++|+|++|+++ .+|..+.++++|+.|+
T Consensus       425 ----------------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~  479 (562)
T 3a79_B          425 ----------------------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELN  479 (562)
T ss_dssp             ----------------------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEE
T ss_pred             ----------------------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEE
Confidence                                  1247789999999999987777665  79999999999999 6777777999999999


Q ss_pred             CCCCcCcccCcccccCCCCCCeEeccCCcCcccCCC
Q 043317          572 LSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD  607 (700)
Q Consensus       572 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  607 (700)
                      |++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus       480 L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          480 VASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            999999954444499999999999999999977664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.9e-43  Score=387.13  Aligned_cols=458  Identities=20%  Similarity=0.216  Sum_probs=329.5

Q ss_pred             CCCCCEEEeCcc----CCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEE
Q 043317           18 LTILQVLDLSGS----SSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLL   93 (700)
Q Consensus        18 l~~L~~L~Lsg~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~   93 (700)
                      +...++++++++    +|..+.  ++|++|+|++|.+++..|.+|.++++|++|++++|++++..| ..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEE
Confidence            445589999954    566554  899999999999999988999999999999999999995444 6799999999999


Q ss_pred             cccCccccccccCCCCCCCcccEEEeeCCCCCCc--ChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCC--CEEEccC
Q 043317           94 LSSTNNMLLVKTENFLPTFQLKVLELANCSLNVV--PTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKL--EVLFLTN  169 (700)
Q Consensus        94 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L--~~L~L~~  169 (700)
                      +++|.+. .++..   .+++|++|++++|+++.+  |..+.++++|++|++++|.+++. .   +..+++|  ++|++++
T Consensus       107 Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          107 VSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDL  178 (562)
T ss_dssp             CTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEE
T ss_pred             CCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeec
Confidence            9998865 56654   788999999999999765  47899999999999999999842 1   2355666  9999999


Q ss_pred             CcC--cccCCCCCCCCC-CccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCC----ccCCccccCCCCCcEEEccC
Q 043317          170 NSF--TGNLRLPNTKHD-FLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE----GNIPSSVGEMKELIILHLSK  242 (700)
Q Consensus       170 n~l--~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~L~~  242 (700)
                      |.+  ++..+..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|+..    ......+..+++|+.+++++
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            999  766666655443 11245667777666555554444666777777766421    01122345555666666655


Q ss_pred             ccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccc-----cCCCCCcEEEcccCc
Q 043317          243 NNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGL-----LNSTKLYQLDISHNF  317 (700)
Q Consensus       243 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~  317 (700)
                      +.+.+......                    . .. ...++|++|++++|.+++.+|..+     ..++.|+.++++.+.
T Consensus       259 ~~l~~~~~~~~--------------------~-~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~  316 (562)
T 3a79_B          259 IETTWKCSVKL--------------------F-QF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV  316 (562)
T ss_dssp             EEECHHHHHHH--------------------H-HH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred             CcCcHHHHHHH--------------------H-Hh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence            55433111110                    0 00 112356666666666665555554     455555555555555


Q ss_pred             CCCCcc-hhhcC---CCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCcc-
Q 043317          318 LSGHIP-HWMGN---FSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSG-  391 (700)
Q Consensus       318 l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~-  391 (700)
                      +  .+| .++..   ..+|++|++++|.+....  ....+++|++|++++|.+++..+..+ .+++|++|++++|++++ 
T Consensus       317 ~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  392 (562)
T 3a79_B          317 F--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF  392 (562)
T ss_dssp             C--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT
T ss_pred             e--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc
Confidence            5  233 22222   256788888887775321  12567788888888888888766666 78888999999998886 


Q ss_pred             -CcchhhhCCCCccEEECcCCcccccCCh-hhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCC
Q 043317          392 -PIPDMLFRSSKLMTLDLRGNNLEGQIPD-QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPL  469 (700)
Q Consensus       392 -~~~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  469 (700)
                       .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+                        
T Consensus       393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l------------------------  448 (562)
T 3a79_B          393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL------------------------  448 (562)
T ss_dssp             THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC------------------------
T ss_pred             ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh------------------------
Confidence             3356788899999999999999974554 57889999999999999875433221                        


Q ss_pred             cccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCC
Q 043317          470 GFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLS  549 (700)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  549 (700)
                                                                    .+.|+.|+|++|+++ .+|..+..+++|++|+|+
T Consensus       449 ----------------------------------------------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          449 ----------------------------------------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA  481 (562)
T ss_dssp             ----------------------------------------------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECC
T ss_pred             ----------------------------------------------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECC
Confidence                                                          146888999999999 677777799999999999


Q ss_pred             CccCccccCcccccccCCCEEeCCCCcCcccCcc
Q 043317          550 HNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPA  583 (700)
Q Consensus       550 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  583 (700)
                      +|++++..+..|+.+++|+.|++++|++++..|.
T Consensus       482 ~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          482 SNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             SSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            9999954444499999999999999999986653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.8e-42  Score=370.54  Aligned_cols=391  Identities=21%  Similarity=0.220  Sum_probs=255.9

Q ss_pred             ccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccC-CCCCCCCCCccEEeCC
Q 043317          114 LKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL-RLPNTKHDFLHHLDAS  192 (700)
Q Consensus       114 L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~  192 (700)
                      -+.++.++++++.+|. +  .++|++|++++|.+++..|..+ .++++|++|++++|.+.+.+ +..+..+++|++|+++
T Consensus        12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            3457777777777776 2  2577777777777774434433 46777777777777665333 3445555566666666


Q ss_pred             CCcCccccChhHHhhccCCcEEEccCCcCCccCCcc--ccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccc
Q 043317          193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSS--VGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF  270 (700)
Q Consensus       193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l  270 (700)
                      +|.+.+..|..+.. +++|++|++++|.+++..+..  +.++++|++|++++|++++..|..++..+++|++|++++|.+
T Consensus        88 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCTTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCccCccChhhccC-cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            66555443444433 455555555555555433322  555555555555555555444444334445555555555544


Q ss_pred             ccccccccCCCCCCcEEEcccCcccccccccccCC--CCCcEEEcccCcCCCCcchh--------hcCCCCCcEEEcccC
Q 043317          271 YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNS--TKLYQLDISHNFLSGHIPHW--------MGNFSNLEILLMSNN  340 (700)
Q Consensus       271 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n  340 (700)
                      .+                        ..+..+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|
T Consensus       167 ~~------------------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  222 (455)
T 3v47_A          167 KS------------------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN  222 (455)
T ss_dssp             SC------------------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred             cc------------------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence            44                        444444333  34555555555555433222        224456677777777


Q ss_pred             cCcccchhhccCC---CCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhh--CCCCccEEECcCCcccc
Q 043317          341 CLEGNIPVQLLNH---RTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLF--RSSKLMTLDLRGNNLEG  415 (700)
Q Consensus       341 ~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~N~l~~  415 (700)
                      .+.+..|..+...   .+|+.|++++|.+.+.....             +.+.+..+..+.  ..++|++|++++|++++
T Consensus       223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  289 (455)
T 3v47_A          223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFA  289 (455)
T ss_dssp             CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred             cccccchhhhhccccccceeeEeeccccccccccch-------------hhhccCcccccccccccCceEEEecCccccc
Confidence            7666666555433   56677777766654432211             112111122222  23688888888888888


Q ss_pred             cCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCc
Q 043317          416 QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP  495 (700)
Q Consensus       416 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (700)
                      ..|..+..+++|++|++++|++++..|..+.+                                                
T Consensus       290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------------------  321 (455)
T 3v47_A          290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------------------------------------------------  321 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------------------------------------------------
T ss_pred             cchhhcccCCCCCEEECCCCcccccChhHhcC------------------------------------------------
Confidence            88888888889999999998888666655543                                                


Q ss_pred             ccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCC
Q 043317          496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN  575 (700)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  575 (700)
                                          ++.|+.|+|++|.+++..|..++.+++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus       322 --------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          322 --------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN  381 (455)
T ss_dssp             --------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             --------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC
Confidence                                367888999999998888889999999999999999999888999999999999999999


Q ss_pred             cCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCCCc
Q 043317          576 RLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTF  614 (700)
Q Consensus       576 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~  614 (700)
                      ++++..+..+..+++|++|++++|++++.+|...++..|
T Consensus       382 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~  420 (455)
T 3v47_A          382 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  420 (455)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred             ccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHH
Confidence            999888888899999999999999999999875554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1e-40  Score=361.24  Aligned_cols=388  Identities=18%  Similarity=0.149  Sum_probs=302.2

Q ss_pred             EEEcccCccccccccCCCCCCCcccEEEeeCCCCCCc-ChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccC
Q 043317           91 VLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVV-PTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTN  169 (700)
Q Consensus        91 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~  169 (700)
                      .++.+++. ...++.  +  .++|++|++++|.++.+ |..+.++++|++|++++|.+.+.++...+.++++|++|++++
T Consensus        14 ~~~c~~~~-l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRG-LHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSC-CSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCC-cccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            45555543 233443  1  25899999999999766 778999999999999999998788776677999999999999


Q ss_pred             CcCcccCCCCCCCCCCccEEeCCCCcCccccChh-HHhhccCCcEEEccCCcCCccCCcc-ccCCCCCcEEEccCccCCC
Q 043317          170 NSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQD-MGTILKKLLVLDISNNHFEGNIPSS-VGEMKELIILHLSKNNFSE  247 (700)
Q Consensus       170 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~  247 (700)
                      |.+++..|..+..+++|++|++++|.+.+.++.. .+..+++|++|++++|.+.+..|.. +.++++|++|++++|++.+
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            9999999999999999999999999998755543 2344889999999999999887876 8999999999999999988


Q ss_pred             CCchHHHhcC--CcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchh
Q 043317          248 DFSTPFLTGC--ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHW  325 (700)
Q Consensus       248 ~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  325 (700)
                      ..+..+ ..+  .+|+.|++++|.+.+..+..+.                ......+..+++|++|++++|++++..|..
T Consensus       169 ~~~~~l-~~l~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  231 (455)
T 3v47_A          169 ICEEDL-LNFQGKHFTLLRLSSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKESMAKR  231 (455)
T ss_dssp             CCTTTS-GGGTTCEEEEEECTTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred             cChhhh-hccccccccccccccCcccccchhhcc----------------ccccccccccceeeeEecCCCcccccchhh
Confidence            766554 223  5677777777776554332211                001112334456777777777766666655


Q ss_pred             hcCC---CCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc---CCCCCcEEEccCCcCccCcchhhhC
Q 043317          326 MGNF---SNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF---NLSSLKHLYVQKNALSGPIPDMLFR  399 (700)
Q Consensus       326 ~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~  399 (700)
                      +...   ++|+.|++++|.+.+...              ..+.+.+.....+   ..++|++|++++|++++..|..+..
T Consensus       232 ~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  297 (455)
T 3v47_A          232 FFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH  297 (455)
T ss_dssp             HHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred             hhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence            5443   667777777776553211              1122222222222   3578999999999999888888999


Q ss_pred             CCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccc
Q 043317          400 SSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYN  479 (700)
Q Consensus       400 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (700)
                      +++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+                                
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------  345 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN--------------------------------  345 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT--------------------------------
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC--------------------------------
Confidence            999999999999999888889999999999999999997655555543                                


Q ss_pred             cccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCc
Q 043317          480 STLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPR  559 (700)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  559 (700)
                                                          +++|+.|+|++|++++..|..+..+++|++|++++|++++..+.
T Consensus       346 ------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  389 (455)
T 3v47_A          346 ------------------------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG  389 (455)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ------------------------------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence                                                37788999999999999999999999999999999999987778


Q ss_pred             ccccccCCCEEeCCCCcCcccCc
Q 043317          560 SFSNLQMIESLDLSNNRLSGQIP  582 (700)
Q Consensus       560 ~~~~l~~L~~L~Ls~N~l~~~~p  582 (700)
                      .|+.+++|+.|++++|++++.+|
T Consensus       390 ~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          390 IFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCTT
T ss_pred             HhccCCcccEEEccCCCcccCCC
Confidence            88999999999999999998877

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.1e-41  Score=365.39  Aligned_cols=403  Identities=24%  Similarity=0.314  Sum_probs=224.6

Q ss_pred             CCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCccc
Q 043317           36 YLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLK  115 (700)
Q Consensus        36 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  115 (700)
                      ..++|++|++++|.+ +.+|.+++++++|++|++++|++.|.+| ..++.+++|+.+++..|..            .+++
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~------------~~l~   74 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD------------RQAH   74 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH------------HTCS
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc------------cCCC
Confidence            457888899999988 6888889999999999999998887777 4677777777777765531            3678


Q ss_pred             EEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCc
Q 043317          116 VLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN  195 (700)
Q Consensus       116 ~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  195 (700)
                      +|++++|+++.+|..   .++|++|++++|.+++ +|.    ..++|++|++++|++++                     
T Consensus        75 ~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~---------------------  125 (454)
T 1jl5_A           75 ELELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA---------------------  125 (454)
T ss_dssp             EEECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC---------------------
T ss_pred             EEEecCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc---------------------
Confidence            888888888777762   3678888888888874 664    23567777776666553                     


Q ss_pred             CccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccc
Q 043317          196 FIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFF  275 (700)
Q Consensus       196 l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  275 (700)
                          +|..    .++|++|++++|++++ +| .++++++|++|++++|++++ +|.    ..++|++|++++|++.+. +
T Consensus       126 ----l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~l-~  189 (454)
T 1jl5_A          126 ----LSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEEL-P  189 (454)
T ss_dssp             ----CCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSC-C
T ss_pred             ----ccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCcC-c
Confidence                1110    1356666666666664 44 36666666666666666654 332    134666666666666652 3


Q ss_pred             cccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCC
Q 043317          276 SKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRT  355 (700)
Q Consensus       276 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  355 (700)
                       .+..+++|+.|++++|++++ +|..   .++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|.   .+++
T Consensus       190 -~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~  258 (454)
T 1jl5_A          190 -ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPS  258 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTT
T ss_pred             -cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccc
Confidence             46667777777777777664 3322   246777777777776 4553 6677777777777777764 333   2367


Q ss_pred             CCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhcc-CCCCEEecCC
Q 043317          356 LKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQL-RRLGMMDLSH  434 (700)
Q Consensus       356 L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~  434 (700)
                      |+.|++++|.+++.+..   +++|++|++++|++++ +|..   .++|++|++++|++++. +    .+ ++|++|++++
T Consensus       259 L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~  326 (454)
T 1jl5_A          259 LEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSN  326 (454)
T ss_dssp             CCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCS
T ss_pred             cCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCC
Confidence            77777777777764332   3677777777777765 2211   25777777777777642 2    22 4777788877


Q ss_pred             CccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCc
Q 043317          435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGS  514 (700)
Q Consensus       435 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  514 (700)
                      |++++ +|..                                                                      
T Consensus       327 N~l~~-lp~~----------------------------------------------------------------------  335 (454)
T 1jl5_A          327 NKLIE-LPAL----------------------------------------------------------------------  335 (454)
T ss_dssp             SCCSC-CCCC----------------------------------------------------------------------
T ss_pred             Ccccc-cccc----------------------------------------------------------------------
Confidence            77764 3321                                                                      


Q ss_pred             cccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCcc--ccCcccccccCCCEEeCCCCcCcccCcccccCCCCCC
Q 043317          515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSG--SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLS  592 (700)
Q Consensus       515 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  592 (700)
                       +++|+.|++++|.++ .+|.   .+++|++|++++|++++  .+|.+++++        +.|.+.+.+|..   +++|+
T Consensus       336 -~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~  399 (454)
T 1jl5_A          336 -PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLK  399 (454)
T ss_dssp             -CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC----------------
T ss_pred             -CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCC
Confidence             245667778888777 3554   36777888888888776  566655433        345566666653   36677


Q ss_pred             eEeccCCcCcc--cCCC
Q 043317          593 NFNVSYNNLSG--LIPD  607 (700)
Q Consensus       593 ~L~ls~N~l~~--~~p~  607 (700)
                      +|++++|++++  .+|.
T Consensus       400 ~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          400 QLHVETNPLREFPDIPE  416 (454)
T ss_dssp             -----------------
T ss_pred             EEECCCCcCCccccchh
Confidence            77788887776  5553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2e-39  Score=347.87  Aligned_cols=409  Identities=20%  Similarity=0.236  Sum_probs=198.4

Q ss_pred             chhccCCCCCCEEEeC----ccCCccccCCCCCCEEECCCCcCCcccchhccCCCCC-------------CEEeCCCCcC
Q 043317           12 LTGLANLTILQVLDLS----GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSL-------------EYLDLSYNNF   74 (700)
Q Consensus        12 p~~~~~l~~L~~L~Ls----g~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~l   74 (700)
                      |+.+ +.++|++|+++    |.+|++++++++|++|++++|.++|.+|..++++++|             ++|++++|.+
T Consensus         5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l   83 (454)
T 1jl5_A            5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL   83 (454)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred             cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence            4444 46899999999    6799999999999999999999999999999999876             6666666665


Q ss_pred             CCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchH
Q 043317           75 EGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSW  154 (700)
Q Consensus        75 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~  154 (700)
                      ++ +|.    -.                         ++|++|++++|.++.+|..   .++|++|++++|+++ .+|. 
T Consensus        84 ~~-lp~----~~-------------------------~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~-~l~~-  128 (454)
T 1jl5_A           84 SS-LPE----LP-------------------------PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSD-  128 (454)
T ss_dssp             SC-CCS----CC-------------------------TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCS-
T ss_pred             cc-CCC----Cc-------------------------CCCCEEEccCCcCCccccc---cCCCcEEECCCCccC-cccC-
Confidence            53 221    01                         3556666666666555542   256667777777666 3432 


Q ss_pred             HhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCC
Q 043317          155 MLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKE  234 (700)
Q Consensus       155 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~  234 (700)
                         ..++|++|++++|++++ +| .+..+++|++|++++|++.+ +|..    .++|++|++++|++++ +| .++++++
T Consensus       129 ---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~  196 (454)
T 1jl5_A          129 ---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPF  196 (454)
T ss_dssp             ---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred             ---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCC
Confidence               12567777777777665 44 46667777777777777663 5543    2478888888888875 45 5788888


Q ss_pred             CcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcc
Q 043317          235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDIS  314 (700)
Q Consensus       235 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls  314 (700)
                      |+.|++++|++++ +|.    ..++|++|++++|.+. .+| .+..+++|++|++++|++++ +|..   .++|++|+++
T Consensus       197 L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~  265 (454)
T 1jl5_A          197 LTAIYADNNSLKK-LPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVR  265 (454)
T ss_dssp             CCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECC
T ss_pred             CCEEECCCCcCCc-CCC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECC
Confidence            8888888888765 332    1346666666666665 233 25556666666666666653 2221   2455666666


Q ss_pred             cCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcc
Q 043317          315 HNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIP  394 (700)
Q Consensus       315 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~  394 (700)
                      +|++++ +|..   .++|++|++++|+++                        +....   .++|++|++++|++++ ++
T Consensus       266 ~N~l~~-l~~~---~~~L~~L~ls~N~l~------------------------~l~~~---~~~L~~L~l~~N~l~~-i~  313 (454)
T 1jl5_A          266 DNYLTD-LPEL---PQSLTFLDVSENIFS------------------------GLSEL---PPNLYYLNASSNEIRS-LC  313 (454)
T ss_dssp             SSCCSC-CCCC---CTTCCEEECCSSCCS------------------------EESCC---CTTCCEEECCSSCCSE-EC
T ss_pred             CCcccc-cCcc---cCcCCEEECcCCccC------------------------cccCc---CCcCCEEECcCCcCCc-cc
Confidence            665553 2321   244555555555554                        32110   1345555555555543 11


Q ss_pred             hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccc
Q 043317          395 DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYI  474 (700)
Q Consensus       395 ~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  474 (700)
                      .   ..++|++|++++|++++ +|..   +++|++|++++|+++ .+|.   .                           
T Consensus       314 ~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~---------------------------  355 (454)
T 1jl5_A          314 D---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---L---------------------------  355 (454)
T ss_dssp             C---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---C---------------------------
T ss_pred             C---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---h---------------------------
Confidence            1   01356666666666653 3332   356666666666665 2332   0                           


Q ss_pred             ccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcc--cCCccccCcCCCcEEeCCCcc
Q 043317          475 GTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTG--NVPSEIGDLQKIRGLNLSHNC  552 (700)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~  552 (700)
                                                               +++|+.|++++|++++  .+|..++.        ++.|.
T Consensus       356 -----------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~  386 (454)
T 1jl5_A          356 -----------------------------------------PQNLKQLHVEYNPLREFPDIPESVED--------LRMNS  386 (454)
T ss_dssp             -----------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC
T ss_pred             -----------------------------------------hhhccEEECCCCCCCcCCCChHHHHh--------hhhcc
Confidence                                                     1455666666666665  45554433        23455


Q ss_pred             CccccCcccccccCCCEEeCCCCcCcc--cCcccccCCCCCCeEeccCCcCcccCCC
Q 043317          553 LSGSIPRSFSNLQMIESLDLSNNRLSG--QIPAQLIELNFLSNFNVSYNNLSGLIPD  607 (700)
Q Consensus       553 l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~  607 (700)
                      +.+.+|..   +++|+.||+++|++++  .+|.+      ++.|.+++|.+.+.+|.
T Consensus       387 ~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          387 HLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             ---------------------------------------------------------
T ss_pred             cccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence            66666653   4677788888888876  55543      45566777777776653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.7e-38  Score=340.15  Aligned_cols=321  Identities=20%  Similarity=0.175  Sum_probs=236.4

Q ss_pred             cEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcC
Q 043317          187 HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLS  266 (700)
Q Consensus       187 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~  266 (700)
                      +.++.+++.++ .+|..+.   ++++.|++++|++++..+..|.++++|++|++++|.+++..|..+ .++++|++|+++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECC
Confidence            56788888776 6777653   578899999999988778888888999999999988877656554 568888888888


Q ss_pred             CcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccc
Q 043317          267 DNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI  346 (700)
Q Consensus       267 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  346 (700)
                      +|.+.+..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            88888777777788888888888888888777778888888888888888888777777888888888888888888766


Q ss_pred             hhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccC
Q 043317          347 PVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR  425 (700)
Q Consensus       347 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~  425 (700)
                      +..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|...+.+|.......+|++|++++|++++..+..+..++
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence            6777888888888888888877776666 677788888877777666666666666777777777777754445666777


Q ss_pred             CCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeec
Q 043317          426 RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTK  505 (700)
Q Consensus       426 ~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  505 (700)
                      +|+.|++++|++++..+..|..                                                          
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~----------------------------------------------------------  270 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHE----------------------------------------------------------  270 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTT----------------------------------------------------------
T ss_pred             ccCeeECCCCcCCccChhhccc----------------------------------------------------------
Confidence            7777777777665433332222                                                          


Q ss_pred             cccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCccc
Q 043317          506 NRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ  580 (700)
Q Consensus       506 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  580 (700)
                                ++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus       271 ----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          271 ----------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             ----------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             ----------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence                      24566666666666666666666666666666666666655555666666666666666666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.4e-37  Score=332.07  Aligned_cols=353  Identities=21%  Similarity=0.169  Sum_probs=203.9

Q ss_pred             CCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317          110 PTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL  189 (700)
Q Consensus       110 ~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  189 (700)
                      .+++|++|++++|.++.+| .+..+++|++|++++|++++ +|   +..+++|++|++++|.+++.   .+..++     
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~-----  106 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL---DVTPLT-----  106 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCT-----
T ss_pred             HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---ecCCCC-----
Confidence            3444555555555554444 34445555555555555542 32   23444455555555544432   133344     


Q ss_pred             eCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc
Q 043317          190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN  269 (700)
Q Consensus       190 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~  269 (700)
                                          +|++|++++|++++ ++  ++.+++|++|++++|++++. +   +..+++|++|++++|+
T Consensus       107 --------------------~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          107 --------------------KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D---VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             --------------------TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C---CTTCTTCCEEECTTCS
T ss_pred             --------------------cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c---cccCCcCCEEECCCCC
Confidence                                44444444444443 12  44444444444444444432 1   2334455555555553


Q ss_pred             cccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhh
Q 043317          270 FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ  349 (700)
Q Consensus       270 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  349 (700)
                      ..+..  .+..+++|+.|++++|++++. |  +..+++|+.|++++|++++.   .++.+++|++|++++|++++ +|  
T Consensus       160 ~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--  228 (457)
T 3bz5_A          160 KITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--  228 (457)
T ss_dssp             CCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--
T ss_pred             ccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--
Confidence            33222  244455555666666655542 2  45556666666666666543   25556666666666666664 33  


Q ss_pred             ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCE
Q 043317          350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM  429 (700)
Q Consensus       350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  429 (700)
                      +..+++|+.|++++|.+++.+..  .+++|+.|++++|              +|+.|++++|++.+.+|  +..+++|+.
T Consensus       229 ~~~l~~L~~L~l~~N~l~~~~~~--~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~  290 (457)
T 3bz5_A          229 VTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKE  290 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCCCT--TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCC
T ss_pred             ccccCCCCEEEeeCCcCCCcCHH--HCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCE
Confidence            55666666666666666665422  3566666666554              34456666666665555  356677777


Q ss_pred             EecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccc
Q 043317          430 MDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYE  509 (700)
Q Consensus       430 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  509 (700)
                      |++++|+..+.+|.....+..                                                           
T Consensus       291 L~Ls~n~~l~~l~~~~~~L~~-----------------------------------------------------------  311 (457)
T 3bz5_A          291 LDVTHNTQLYLLDCQAAGITE-----------------------------------------------------------  311 (457)
T ss_dssp             CCCTTCTTCCEEECTTCCCSC-----------------------------------------------------------
T ss_pred             EECCCCcccceeccCCCcceE-----------------------------------------------------------
Confidence            777777766555432211110                                                           


Q ss_pred             cccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCC
Q 043317          510 LYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN  589 (700)
Q Consensus       510 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  589 (700)
                       .....++.|+.|++++|++++. +  ++.+++|+.|++++|++++        ++.|+.|++++|+++|.     ..+.
T Consensus       312 -L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~  374 (457)
T 3bz5_A          312 -LDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTI  374 (457)
T ss_dssp             -CCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEE
T ss_pred             -echhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceee
Confidence             0012236788999999999974 3  8999999999999999986        24677788999999987     2445


Q ss_pred             CCCeEeccCCcCcccCCC
Q 043317          590 FLSNFNVSYNNLSGLIPD  607 (700)
Q Consensus       590 ~L~~L~ls~N~l~~~~p~  607 (700)
                      .|..+++++|+++|.+|.
T Consensus       375 ~l~~l~l~~N~l~g~ip~  392 (457)
T 3bz5_A          375 TMPKETLTNNSLTIAVSP  392 (457)
T ss_dssp             ECCCBCCBTTBEEEECCT
T ss_pred             ecCccccccCcEEEEcCh
Confidence            678899999999999996

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.4e-36  Score=324.38  Aligned_cols=345  Identities=26%  Similarity=0.308  Sum_probs=199.8

Q ss_pred             CCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEe
Q 043317          111 TFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLD  190 (700)
Q Consensus       111 ~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  190 (700)
                      +.+++.|+++++.+..+|. +..+++|++|++++|.++ .++.  +..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            3466777777777766664 556677777777777776 4443  3466777777777776664433  55555555555


Q ss_pred             CCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccc
Q 043317          191 ASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF  270 (700)
Q Consensus       191 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l  270 (700)
                      +++|.+.+ ++. + ..+++|++|++++|.+.+ ++ .+..+++|+.|+++ |.+.+..                     
T Consensus       119 L~~n~l~~-~~~-~-~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~---------------------  171 (466)
T 1o6v_A          119 LFNNQITD-IDP-L-KNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK---------------------  171 (466)
T ss_dssp             CCSSCCCC-CGG-G-TTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG---------------------
T ss_pred             CCCCCCCC-ChH-H-cCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch---------------------
Confidence            55555542 222 2 225556666666555553 22 35555555555554 2332211                     


Q ss_pred             ccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhc
Q 043317          271 YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL  350 (700)
Q Consensus       271 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  350 (700)
                            .+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|  ++.+++|++|++++|.+++.  ..+
T Consensus       172 ------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l  239 (466)
T 1o6v_A          172 ------PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTL  239 (466)
T ss_dssp             ------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             ------hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhh
Confidence                  133444444444444444432  124455555555555555554433  44555566666666555532  235


Q ss_pred             cCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEE
Q 043317          351 LNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMM  430 (700)
Q Consensus       351 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  430 (700)
                      ..+++|+.|++++|.+++..+ ...+++|++|++++|++++..+  +..+++|++|++++|++++..+  +..+++|+.|
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  314 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL  314 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred             hcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence            555666666666666655443 2256666666666666664333  5566677777777777664333  5666777777


Q ss_pred             ecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecccccc
Q 043317          431 DLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYEL  510 (700)
Q Consensus       431 ~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  510 (700)
                      ++++|++++..|  +.                                                                
T Consensus       315 ~L~~n~l~~~~~--~~----------------------------------------------------------------  328 (466)
T 1o6v_A          315 TLYFNNISDISP--VS----------------------------------------------------------------  328 (466)
T ss_dssp             ECCSSCCSCCGG--GG----------------------------------------------------------------
T ss_pred             ECcCCcCCCchh--hc----------------------------------------------------------------
Confidence            777776664332  11                                                                


Q ss_pred             ccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcc
Q 043317          511 YNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG  579 (700)
Q Consensus       511 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  579 (700)
                          .+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       329 ----~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          329 ----SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ----GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ----cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence                135666677777777654  356777777777777777776665  6777777777777777775

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.9e-36  Score=322.35  Aligned_cols=345  Identities=25%  Similarity=0.313  Sum_probs=266.1

Q ss_pred             CCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEE
Q 043317          135 YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVL  214 (700)
Q Consensus       135 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  214 (700)
                      ++++.|+++++.+. .+|.  +..+++|++|++++|.+++                         ++. + ..+++|++|
T Consensus        46 ~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~-------------------------~~~-~-~~l~~L~~L   95 (466)
T 1o6v_A           46 DQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTD-------------------------ITP-L-KNLTKLVDI   95 (466)
T ss_dssp             HTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCC-------------------------CGG-G-TTCTTCCEE
T ss_pred             ccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCC-------------------------chh-h-hccccCCEE
Confidence            45556666665554 3443  2345555555555554442                         222 2 235666666


Q ss_pred             EccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcc
Q 043317          215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKF  294 (700)
Q Consensus       215 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  294 (700)
                      ++++|.+.+..+  +.++++|++|++++|.+++..+   +..+++|++|++++|.+.+..  .+..+++|+.|+++ |.+
T Consensus        96 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~  167 (466)
T 1o6v_A           96 LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQV  167 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESC
T ss_pred             ECCCCccccChh--hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-Ccc
Confidence            666666664333  6667777777777777655322   456777777777777776532  46778888888886 445


Q ss_pred             cccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc
Q 043317          295 SGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF  374 (700)
Q Consensus       295 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  374 (700)
                      .+..  .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+++.. ...
T Consensus       168 ~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~  240 (466)
T 1o6v_A          168 TDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLA  240 (466)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGG
T ss_pred             cCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhh
Confidence            4333  388999999999999999864  348899999999999999997665  778999999999999998752 233


Q ss_pred             CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhh
Q 043317          375 NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIE  454 (700)
Q Consensus       375 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~  454 (700)
                      .+++|++|++++|++++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|++.+..|  +.        
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~--------  306 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS--------  306 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG--------
T ss_pred             cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc--------
Confidence            78999999999999987655  8889999999999999996544  8899999999999999975332  21        


Q ss_pred             hccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCC
Q 043317          455 NVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVP  534 (700)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  534 (700)
                                                                                  .+++|+.|++++|++++..|
T Consensus       307 ------------------------------------------------------------~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          307 ------------------------------------------------------------NLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             ------------------------------------------------------------GCTTCSEEECCSSCCSCCGG
T ss_pred             ------------------------------------------------------------CCCCCCEEECcCCcCCCchh
Confidence                                                                        24789999999999997766


Q ss_pred             ccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCccc
Q 043317          535 SEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL  604 (700)
Q Consensus       535 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  604 (700)
                        ++.+++|+.|++++|++++.  ..++++++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             --hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence              78999999999999999975  578999999999999999999887  89999999999999999974

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-36  Score=326.76  Aligned_cols=357  Identities=21%  Similarity=0.195  Sum_probs=251.7

Q ss_pred             ccCCccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCC
Q 043317           28 GSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTEN  107 (700)
Q Consensus        28 g~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  107 (700)
                      +..+..++++++|++|++++|.+++. | .+..+++|++|++++|++++ ++   ++.+++|++|++++|.+.. +   .
T Consensus        32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~-~---~  101 (457)
T 3bz5_A           32 ATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTN-L---D  101 (457)
T ss_dssp             TTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC-C---C
T ss_pred             cccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCce-e---e
Confidence            33455677788888888888888865 4 67888888888888888875 33   6778888888888877544 2   2


Q ss_pred             CCCCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCcc
Q 043317          108 FLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLH  187 (700)
Q Consensus       108 ~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  187 (700)
                      +..+++|++|++++|+++.+|  +..+++|++|++++|++++ ++   +..+++|++|++++|...+.+  .+..+++|+
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence            677788888888888887775  6778888888888888874 44   347788888888888655444  467778888


Q ss_pred             EEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCC
Q 043317          188 HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD  267 (700)
Q Consensus       188 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~  267 (700)
                      .|++++|++++ +|  + ..+++|++|++++|++++.   .++.+++|+.|++++|++++ +|   +..+++|++|++++
T Consensus       174 ~L~ls~n~l~~-l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          174 TLDCSFNKITE-LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSV  242 (457)
T ss_dssp             EEECCSSCCCC-CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCS
T ss_pred             EEECCCCccce-ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeC
Confidence            88888888774 55  3 3367888888888888754   37778888888888888876 44   35678888888888


Q ss_pred             cccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccch
Q 043317          268 NNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIP  347 (700)
Q Consensus       268 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  347 (700)
                      |++++..+   ..+++|+.|++++|              +|+.|++++|.+.+.+|  ++.+++|+.|++++|...+.+|
T Consensus       243 N~l~~~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          243 NPLTELDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             SCCSCCCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred             CcCCCcCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence            88877543   34555555555443              23344444444444443  2344455555555554443333


Q ss_pred             hh--------ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCCh
Q 043317          348 VQ--------LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPD  419 (700)
Q Consensus       348 ~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~  419 (700)
                      ..        +.++++|+.|++++|++++.  ....+++|+.|++++|++++        ++.|..|++++|.+.|.   
T Consensus       304 ~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l--~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~---  370 (457)
T 3bz5_A          304 CQAAGITELDLSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE---  370 (457)
T ss_dssp             CTTCCCSCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE---
T ss_pred             cCCCcceEechhhcccCCEEECCCCccccc--ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec---
Confidence            21        33446788888888888885  23378888888888888875        24566777888888765   


Q ss_pred             hhhccCCCCEEecCCCccCCCCCchhhh
Q 043317          420 QICQLRRLGMMDLSHNRFNGSIPSCFTN  447 (700)
Q Consensus       420 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  447 (700)
                        ..+..|+.+++++|+++|.+|..+..
T Consensus       371 --~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          371 --GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             --EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             --ceeeecCccccccCcEEEEcChhHhc
Confidence              35677888999999999999976544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=330.08  Aligned_cols=278  Identities=17%  Similarity=0.122  Sum_probs=158.0

Q ss_pred             CEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccC
Q 043317          163 EVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSK  242 (700)
Q Consensus       163 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~  242 (700)
                      +.++.+++.++ .+|..+  .+.++.|++++|.+.+..+..+. .+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            34555555544 223322  23556666666665533333333 255666666666666655566666666666666666


Q ss_pred             ccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCc
Q 043317          243 NNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHI  322 (700)
Q Consensus       243 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  322 (700)
                      |++++ ++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus        90 n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           90 NRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            66643 33333345566666666666666655555666666666666666666555555666666666666666666555


Q ss_pred             chhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCC
Q 043317          323 PHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSS  401 (700)
Q Consensus       323 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~  401 (700)
                      +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+... ...+|++|++++|++++..+..+..++
T Consensus       169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence            5556666666666666666665555556666666666666655444333332 444666666666666544434555666


Q ss_pred             CccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchh
Q 043317          402 KLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCF  445 (700)
Q Consensus       402 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  445 (700)
                      +|++|++++|++++..+..+..+++|+.|++++|++++..|..|
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF  292 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence            66666666666665555556666666666666666654444333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=9.8e-35  Score=307.30  Aligned_cols=332  Identities=18%  Similarity=0.152  Sum_probs=192.1

Q ss_pred             CCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEE
Q 043317          184 DFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFL  263 (700)
Q Consensus       184 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  263 (700)
                      .+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.. +..+++|++|
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L  122 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVL  122 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH-hcCCCCCCEE
Confidence            34455555555543 455555555666666666666666555556666666666666666665433332 2445555555


Q ss_pred             EcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCc
Q 043317          264 DLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE  343 (700)
Q Consensus       264 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  343 (700)
                      ++++|.+....+..+..+++|++|++++|++++..+..+..+++|++|++++|++++.   .+..+++|+.|++++|.+ 
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l-  198 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL-  198 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC-
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc-
Confidence            5555555544433344555555555555555544444455555555555555554432   123344444445444444 


Q ss_pred             ccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhc
Q 043317          344 GNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ  423 (700)
Q Consensus       344 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~  423 (700)
                                             ++..    ..++|++|++++|++... |..  ..++|++|++++|++++.  ..+..
T Consensus       199 -----------------------~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~  246 (390)
T 3o6n_A          199 -----------------------STLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLN  246 (390)
T ss_dssp             -----------------------SEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGG
T ss_pred             -----------------------cccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcC
Confidence                                   3321    123455555555555422 221  134566666666666532  35556


Q ss_pred             cCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEe
Q 043317          424 LRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFV  503 (700)
Q Consensus       424 l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  503 (700)
                      +++|++|++++|++++..|..+..                                                        
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------------------------------  270 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYHPFVK--------------------------------------------------------  270 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTT--------------------------------------------------------
T ss_pred             CCCccEEECCCCcCCCcChhHccc--------------------------------------------------------
Confidence            666666666666665444443332                                                        


Q ss_pred             eccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcc
Q 043317          504 TKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPA  583 (700)
Q Consensus       504 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  583 (700)
                                  +++|+.|++++|++++ +|..+..+++|++|++++|+++ .+|..++.+++|+.|++++|+++.. | 
T Consensus       271 ------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-  334 (390)
T 3o6n_A          271 ------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-  334 (390)
T ss_dssp             ------------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-
T ss_pred             ------------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-
Confidence                        2456666666666663 3455567788888888888888 5667788888899999999988855 3 


Q ss_pred             cccCCCCCCeEeccCCcCcccCCCCCCCCCcCCCccCCCcCCcC
Q 043317          584 QLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCG  627 (700)
Q Consensus       584 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lcg  627 (700)
                       +..++.|++|++++|++++... ...+..+....+.+++..|.
T Consensus       335 -~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~  376 (390)
T 3o6n_A          335 -LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCK  376 (390)
T ss_dssp             -CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCC
T ss_pred             -chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceec
Confidence             6778889999999999886432 23444555555666666665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.6e-35  Score=302.54  Aligned_cols=258  Identities=33%  Similarity=0.558  Sum_probs=225.7

Q ss_pred             CCCcEEEcccCcCCC--CcchhhcCCCCCcEEEccc-CcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcE
Q 043317          306 TKLYQLDISHNFLSG--HIPHWMGNFSNLEILLMSN-NCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKH  381 (700)
Q Consensus       306 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~  381 (700)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++..+..+ .+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467788888888877  6777888888888888884 77877788888888888888888888887777666 7888889


Q ss_pred             EEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccC-CCCEEecCCCccCCCCCchhhhhhhhhhhhccccC
Q 043317          382 LYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR-RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFG  460 (700)
Q Consensus       382 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~  460 (700)
                      |++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..+            
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l------------  197 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------  197 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC------------
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC------------
Confidence            99999998888888999999999999999999988999999988 99999999999988887766542            


Q ss_pred             CCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCc
Q 043317          461 GELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDL  540 (700)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  540 (700)
                                                                              + |+.|++++|.+++.+|..++.+
T Consensus       198 --------------------------------------------------------~-L~~L~Ls~N~l~~~~~~~~~~l  220 (313)
T 1ogq_A          198 --------------------------------------------------------N-LAFVDLSRNMLEGDASVLFGSD  220 (313)
T ss_dssp             --------------------------------------------------------C-CSEEECCSSEEEECCGGGCCTT
T ss_pred             --------------------------------------------------------c-ccEEECcCCcccCcCCHHHhcC
Confidence                                                                    3 7889999999999999999999


Q ss_pred             CCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCCCcCCCccC
Q 043317          541 QKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYR  620 (700)
Q Consensus       541 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~  620 (700)
                      ++|++|++++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.
T Consensus       221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~  299 (313)
T 1ogq_A          221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA  299 (313)
T ss_dssp             SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred             CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence            9999999999999977766 889999999999999999999999999999999999999999999998888888889999


Q ss_pred             CCcCCcCcCCCCCC
Q 043317          621 GNLYLCGPTINKSC  634 (700)
Q Consensus       621 gn~~lcg~~~~~~c  634 (700)
                      +|+++||.|+. .|
T Consensus       300 ~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          300 NNKCLCGSPLP-AC  312 (313)
T ss_dssp             SSSEEESTTSS-CC
T ss_pred             CCCCccCCCCC-CC
Confidence            99999998775 46

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.3e-35  Score=326.22  Aligned_cols=335  Identities=19%  Similarity=0.137  Sum_probs=202.5

Q ss_pred             CCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcE
Q 043317          183 HDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWF  262 (700)
Q Consensus       183 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~  262 (700)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..+.. +.++++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH-HcCCCCCCE
Confidence            345566666666554 455555554566666666666666555555666666666666666655433322 234555555


Q ss_pred             EEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcC
Q 043317          263 LDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL  342 (700)
Q Consensus       263 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  342 (700)
                      |++++|.+.+..+..+..+++|++|                        ++++|.+++..|..|..+++|++|++++|.+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L------------------------~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  183 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTL------------------------SMSNNNLERIEDDTFQATTSLQNLQLSSNRL  183 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEE------------------------ECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEE------------------------EeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence            5555555544444344444444444                        4444444444444444445555555555544


Q ss_pred             cccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhh
Q 043317          343 EGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQIC  422 (700)
Q Consensus       343 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~  422 (700)
                      ++..   +..+++|+.|++++|.+++..    ..++|+.|++++|.++.. +..+  .++|+.|++++|.+++  +..+.
T Consensus       184 ~~~~---~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~  251 (597)
T 3oja_B          184 THVD---LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLL  251 (597)
T ss_dssp             SBCC---GGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGG
T ss_pred             CCcC---hhhhhhhhhhhcccCcccccc----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--Chhhc
Confidence            4321   233445555555555444322    133556666666655432 2211  2466666666666664  34566


Q ss_pred             ccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEE
Q 043317          423 QLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEF  502 (700)
Q Consensus       423 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  502 (700)
                      .+++|+.|++++|.+.+..|..|..                                                       
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------------  276 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVK-------------------------------------------------------  276 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTT-------------------------------------------------------
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcC-------------------------------------------------------
Confidence            6667777777777666555544433                                                       


Q ss_pred             eeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317          503 VTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP  582 (700)
Q Consensus       503 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  582 (700)
                                   +++|+.|+|++|.+++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++.. 
T Consensus       277 -------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~-  340 (597)
T 3oja_B          277 -------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK-  340 (597)
T ss_dssp             -------------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC-
T ss_pred             -------------ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC-
Confidence                         2556667777777764 4555677888999999999998 57777888999999999999998653 


Q ss_pred             ccccCCCCCCeEeccCCcCcccCCCCCCCCCcCCCccCCCcCCcCcC
Q 043317          583 AQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPT  629 (700)
Q Consensus       583 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lcg~~  629 (700)
                        +..++.|++|++++|++++..+ ..++..+....+.++...|+.+
T Consensus       341 --~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          341 --LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             --CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred             --hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence              6678899999999999987543 3456667777788888888853

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.9e-33  Score=291.27  Aligned_cols=304  Identities=21%  Similarity=0.311  Sum_probs=240.1

Q ss_pred             ccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEE
Q 043317          208 LKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFL  287 (700)
Q Consensus       208 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  287 (700)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|++++. +.  +..+++|++|++++|.+.+.  ..+..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            5678888888887763 33 377788888888888887653 33  46688888888888887664  357788888888


Q ss_pred             EcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCc
Q 043317          288 YLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLS  367 (700)
Q Consensus       288 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  367 (700)
                      ++++|.+++..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.++
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence            888888875433  7788888888888886554444 37888889999999888875444  778888999999999888


Q ss_pred             ccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhh
Q 043317          368 GSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTN  447 (700)
Q Consensus       368 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  447 (700)
                      +..+ ...+++|+.+++++|.+++..+  +..+++|++|++++|++++..+  +..+++|++|++++|++++. + .+  
T Consensus       191 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~--  261 (347)
T 4fmz_A          191 DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-AV--  261 (347)
T ss_dssp             CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GG--
T ss_pred             cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-hH--
Confidence            7655 3378899999999999886544  7788999999999999985443  88899999999999988742 1 11  


Q ss_pred             hhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCC
Q 043317          448 MLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCN  527 (700)
Q Consensus       448 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  527 (700)
                                                                                        ..+++|+.|++++|
T Consensus       262 ------------------------------------------------------------------~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          262 ------------------------------------------------------------------KDLTKLKMLNVGSN  275 (347)
T ss_dssp             ------------------------------------------------------------------TTCTTCCEEECCSS
T ss_pred             ------------------------------------------------------------------hcCCCcCEEEccCC
Confidence                                                                              12478889999999


Q ss_pred             cCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc
Q 043317          528 ELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS  602 (700)
Q Consensus       528 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  602 (700)
                      .+++.  ..+..+++|++|++++|++++..|..++++++|+.|++++|++++..|  +..++.|++|++++|+++
T Consensus       276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            99864  458899999999999999998889999999999999999999998777  888999999999999986

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.9e-32  Score=285.08  Aligned_cols=305  Identities=22%  Similarity=0.288  Sum_probs=222.7

Q ss_pred             CCCcccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEE
Q 043317          110 PTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL  189 (700)
Q Consensus       110 ~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  189 (700)
                      .+++|++|+++++.+..+|. +..+++|++|++++|+++ .++.  +..+++|++|++++|.+++.  ..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L  115 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL  115 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence            34456666666666655543 555666666666666665 3444  34666666666666666542  235566666666


Q ss_pred             eCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcc
Q 043317          190 DASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN  269 (700)
Q Consensus       190 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~  269 (700)
                      ++++|.+. .++. + ..+++|++|++++|......+ .+..+++|++|++++|.+.+..+   +..+++|++|++++|.
T Consensus       116 ~l~~n~i~-~~~~-~-~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          116 YLNEDNIS-DISP-L-ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             ECTTSCCC-CCGG-G-TTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSC
T ss_pred             ECcCCccc-Cchh-h-ccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCc
Confidence            66666665 3333 2 336777788887775553333 47778888888888887765433   4567888888888888


Q ss_pred             cccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhh
Q 043317          270 FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ  349 (700)
Q Consensus       270 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  349 (700)
                      +.+..+  +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  260 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA  260 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred             cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence            766543  6678888888888888886544  7788899999999999886544  88889999999999998853  45


Q ss_pred             ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCE
Q 043317          350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM  429 (700)
Q Consensus       350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  429 (700)
                      +..+++|++|++++|.+++. +....+++|++|++++|++++..+..+..+++|++|++++|++++..|  +..+++|+.
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  337 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS  337 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred             HhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence            88889999999999998876 333378999999999999998888999999999999999999997655  888999999


Q ss_pred             EecCCCccC
Q 043317          430 MDLSHNRFN  438 (700)
Q Consensus       430 L~Ls~N~l~  438 (700)
                      |++++|+++
T Consensus       338 L~l~~N~i~  346 (347)
T 4fmz_A          338 ADFANQVIK  346 (347)
T ss_dssp             ESSSCC---
T ss_pred             eehhhhccc
Confidence            999999885

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.3e-33  Score=292.89  Aligned_cols=310  Identities=21%  Similarity=0.204  Sum_probs=270.2

Q ss_pred             CCCcccEEEeeCCCCCCcChh-hcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccE
Q 043317          110 PTFQLKVLELANCSLNVVPTF-LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH  188 (700)
Q Consensus       110 ~~~~L~~L~L~~n~l~~~p~~-l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  188 (700)
                      .+.++++|++++|.++.+|.. +..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            456899999999999888876 467899999999999998 555544568999999999999999888888999999999


Q ss_pred             EeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCc
Q 043317          189 LDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDN  268 (700)
Q Consensus       189 L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n  268 (700)
                      |++++|.+. .+|..++..+++|++|++++|.+.+..+..+.++++|++|++++|++++. +   ...+++|+.|++++|
T Consensus       122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYN  196 (390)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSS
T ss_pred             EECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeecccc
Confidence            999999988 77877766689999999999999988888899999999999999999764 3   245899999999999


Q ss_pred             ccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchh
Q 043317          269 NFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPV  348 (700)
Q Consensus       269 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  348 (700)
                      .+.+.     ...++|++|++++|.++.. |..  ..++|+.|++++|.+++.  .++..+++|++|++++|.+.+..|.
T Consensus       197 ~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          197 LLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             CCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred             ccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence            88654     2346899999999999865 332  347999999999999864  5789999999999999999988899


Q ss_pred             hccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCC
Q 043317          349 QLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLG  428 (700)
Q Consensus       349 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~  428 (700)
                      .+..+++|+.|++++|.+++.......+++|++|++++|+++ .+|..+..+++|++|++++|+++.. +  +..+++|+
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~  342 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK  342 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred             HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence            999999999999999999987665557899999999999998 5777788899999999999999854 3  67889999


Q ss_pred             EEecCCCccCC
Q 043317          429 MMDLSHNRFNG  439 (700)
Q Consensus       429 ~L~Ls~N~l~~  439 (700)
                      .|++++|++.+
T Consensus       343 ~L~l~~N~~~~  353 (390)
T 3o6n_A          343 NLTLSHNDWDC  353 (390)
T ss_dssp             EEECCSSCEEH
T ss_pred             EEEcCCCCccc
Confidence            99999999974

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.4e-34  Score=290.67  Aligned_cols=252  Identities=29%  Similarity=0.416  Sum_probs=221.3

Q ss_pred             CCCcEEEcccCcccc--cccccccCCCCCcEEEccc-CcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCE
Q 043317          282 TQMEFLYLENNKFSG--KIEEGLLNSTKLYQLDISH-NFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKL  358 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  358 (700)
                      .+++.|++++|.+++  .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467888888888887  7888888888899999984 8888888888888899999999999988888888888999999


Q ss_pred             EEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCC-CccEEECcCCcccccCChhhhccCCCCEEecCCCc
Q 043317          359 LSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSS-KLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR  436 (700)
Q Consensus       359 L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  436 (700)
                      |++++|.+++..+..+ .+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            9999999888777777 789999999999999888899998887 999999999999989999999887 9999999999


Q ss_pred             cCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccc
Q 043317          437 FNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNL  516 (700)
Q Consensus       437 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  516 (700)
                      +++..|..+..                                                                    +
T Consensus       209 l~~~~~~~~~~--------------------------------------------------------------------l  220 (313)
T 1ogq_A          209 LEGDASVLFGS--------------------------------------------------------------------D  220 (313)
T ss_dssp             EEECCGGGCCT--------------------------------------------------------------------T
T ss_pred             ccCcCCHHHhc--------------------------------------------------------------------C
Confidence            98776655543                                                                    3


Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  596 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  596 (700)
                      ++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..|+++++|+.|+|++|++++.+|.. ..+++|+.+++
T Consensus       221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l  298 (313)
T 1ogq_A          221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY  298 (313)
T ss_dssp             SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred             CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence            6788899999999977666 888999999999999999999999999999999999999999999986 88999999999


Q ss_pred             cCCc-Cccc
Q 043317          597 SYNN-LSGL  604 (700)
Q Consensus       597 s~N~-l~~~  604 (700)
                      ++|+ +.|.
T Consensus       299 ~~N~~lc~~  307 (313)
T 1ogq_A          299 ANNKCLCGS  307 (313)
T ss_dssp             CSSSEEEST
T ss_pred             cCCCCccCC
Confidence            9998 6653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1e-32  Score=307.84  Aligned_cols=314  Identities=20%  Similarity=0.183  Sum_probs=244.1

Q ss_pred             cCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcE
Q 043317          158 NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELII  237 (700)
Q Consensus       158 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~  237 (700)
                      .+.+++.+++++|.+....+..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+++..|..|+++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            5688999999999998766666788999999999999998655555544 899999999999999988888999999999


Q ss_pred             EEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCc
Q 043317          238 LHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNF  317 (700)
Q Consensus       238 L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~  317 (700)
                      |++++|.+++ +|...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..   +..+++|+.|++++|.
T Consensus       128 L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence            9999999985 55555578999999999999999888888888888888888888877542   3445666677776666


Q ss_pred             CCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhh
Q 043317          318 LSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDML  397 (700)
Q Consensus       318 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  397 (700)
                      +++     +...++|+.|++++|                        .++......  .++|+.|++++|.+++  +.++
T Consensus       204 l~~-----l~~~~~L~~L~ls~n------------------------~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l  250 (597)
T 3oja_B          204 LST-----LAIPIAVEELDASHN------------------------SINVVRGPV--NVELTILKLQHNNLTD--TAWL  250 (597)
T ss_dssp             CSE-----EECCTTCSEEECCSS------------------------CCCEEECSC--CSCCCEEECCSSCCCC--CGGG
T ss_pred             ccc-----ccCCchhheeeccCC------------------------ccccccccc--CCCCCEEECCCCCCCC--Chhh
Confidence            552     122234455555554                        444333322  2567788888888775  3567


Q ss_pred             hCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccc
Q 043317          398 FRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTY  477 (700)
Q Consensus       398 ~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (700)
                      ..+++|++|++++|.+++..|..+..+++|+.|++++|++++ +|..+                                
T Consensus       251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~--------------------------------  297 (597)
T 3oja_B          251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG--------------------------------  297 (597)
T ss_dssp             GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSS--------------------------------
T ss_pred             ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccc--------------------------------
Confidence            788888888888888888888888888889999998888864 22111                                


Q ss_pred             cccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCcccc
Q 043317          478 YNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSI  557 (700)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  557 (700)
                                                          ..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++. 
T Consensus       298 ------------------------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-  339 (597)
T 3oja_B          298 ------------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-  339 (597)
T ss_dssp             ------------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred             ------------------------------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-
Confidence                                                12467888999999998 6777888899999999999999854 


Q ss_pred             CcccccccCCCEEeCCCCcCcccCc
Q 043317          558 PRSFSNLQMIESLDLSNNRLSGQIP  582 (700)
Q Consensus       558 p~~~~~l~~L~~L~Ls~N~l~~~~p  582 (700)
                      |  ++.+++|+.|++++|++++..+
T Consensus       340 ~--~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          340 K--LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             C--hhhcCCCCEEEeeCCCCCChhH
Confidence            3  6778899999999999986543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=7e-35  Score=316.09  Aligned_cols=358  Identities=18%  Similarity=0.156  Sum_probs=280.6

Q ss_pred             CCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCc----cCCccccCCCCCcEEEccCccCCCCCchHHHhcCC-
Q 043317          184 DFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG----NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCI-  258 (700)
Q Consensus       184 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-  258 (700)
                      +.|++|++++|++.......++..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+...++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4577888888887654445555668899999999999874    34667788899999999999987655656666666 


Q ss_pred             ---cCcEEEcCCccccc----ccccccCCCCCCcEEEcccCccccccccccc-----CCCCCcEEEcccCcCCCCc----
Q 043317          259 ---SLWFLDLSDNNFYG----QFFSKDLNLTQMEFLYLENNKFSGKIEEGLL-----NSTKLYQLDISHNFLSGHI----  322 (700)
Q Consensus       259 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~Ls~n~l~~~~----  322 (700)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               79999999999985    4577888999999999999998865444333     2568999999999998643    


Q ss_pred             chhhcCCCCCcEEEcccCcCcccchhhcc-----CCCCCCEEEccCccCcccC----CCcc-CCCCCcEEEccCCcCccC
Q 043317          323 PHWMGNFSNLEILLMSNNCLEGNIPVQLL-----NHRTLKLLSVSENYLSGSM----TSSF-NLSSLKHLYVQKNALSGP  392 (700)
Q Consensus       323 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~----~~~~-~l~~L~~L~l~~n~l~~~  392 (700)
                      +..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++..    +..+ .+++|++|++++|++++.
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            56677789999999999998865555443     3669999999999998742    3333 689999999999998754


Q ss_pred             c-----chhhhCCCCccEEECcCCccccc----CChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCc
Q 043317          393 I-----PDMLFRSSKLMTLDLRGNNLEGQ----IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL  463 (700)
Q Consensus       393 ~-----~~~~~~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  463 (700)
                      .     +..+..+++|++|++++|+++..    ++..+..+++|++|++++|++.+..+..+.....             
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-------------  309 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL-------------  309 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT-------------
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc-------------
Confidence            3     22333588999999999999864    5777888999999999999886433333332100             


Q ss_pred             cCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCccc----CCccccC
Q 043317          464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGN----VPSEIGD  539 (700)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~  539 (700)
                                                                        ...+.|+.|++++|.+++.    ++..+..
T Consensus       310 --------------------------------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  339 (461)
T 1z7x_W          310 --------------------------------------------------EPGCQLESLWVKSCSFTAACCSHFSSVLAQ  339 (461)
T ss_dssp             --------------------------------------------------STTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             --------------------------------------------------cCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence                                                              1125789999999999865    4666778


Q ss_pred             cCCCcEEeCCCccCccccCccccc-----ccCCCEEeCCCCcCcc----cCcccccCCCCCCeEeccCCcCccc
Q 043317          540 LQKIRGLNLSHNCLSGSIPRSFSN-----LQMIESLDLSNNRLSG----QIPAQLIELNFLSNFNVSYNNLSGL  604 (700)
Q Consensus       540 l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~  604 (700)
                      +++|++|++++|++++..+..+..     .++|+.|++++|++++    .+|..+..+++|++|++++|++++.
T Consensus       340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            899999999999998766665553     6799999999999996    7888899999999999999999753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=4.8e-35  Score=317.37  Aligned_cols=386  Identities=19%  Similarity=0.161  Sum_probs=196.8

Q ss_pred             cccEEEeeCCCCCCcC--hhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEe
Q 043317          113 QLKVLELANCSLNVVP--TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLD  190 (700)
Q Consensus       113 ~L~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  190 (700)
                      +|++|++++|+++..+  ..+..+++|++|++++|++++....                     .++..+..+++|++|+
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~---------------------~l~~~l~~~~~L~~L~   62 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK---------------------DISSALRVNPALAELN   62 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH---------------------HHHHHHHTCTTCCEEE
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH---------------------HHHHHHHhCCCcCEEe
Confidence            4666666666664332  2244555666666666665421110                     1122223334444555


Q ss_pred             CCCCcCccccChhHHhhcc----CCcEEEccCCcCCc----cCCccccCCCCCcEEEccCccCCCCCchHHHhc----CC
Q 043317          191 ASSNNFIGTLPQDMGTILK----KLLVLDISNNHFEG----NIPSSVGEMKELIILHLSKNNFSEDFSTPFLTG----CI  258 (700)
Q Consensus       191 l~~n~l~~~~~~~~~~~l~----~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~  258 (700)
                      +++|.+.+..+..++..++    +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+...    .+
T Consensus        63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence            5555544344445555455    58888888888773    447777888888888888888765444333221    34


Q ss_pred             cCcEEEcCCccccccc----ccccCCCCCCcEEEcccCccccccccccc-----CCCCCcEEEcccCcCCCC----cchh
Q 043317          259 SLWFLDLSDNNFYGQF----FSKDLNLTQMEFLYLENNKFSGKIEEGLL-----NSTKLYQLDISHNFLSGH----IPHW  325 (700)
Q Consensus       259 ~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~Ls~n~l~~~----~~~~  325 (700)
                      +|++|++++|.+++..    +..+..+++|++|++++|.++...+..+.     ..++|++|++++|.+++.    ++..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  222 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  222 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence            5777777766665532    33334455666666666665543333222     134556666666655543    3444


Q ss_pred             hcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccC----cchhhhCC
Q 043317          326 MGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGP----IPDMLFRS  400 (700)
Q Consensus       326 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~~  400 (700)
                      +..+++|++|++++|.+.+.....+.                   +..+ .+++|++|++++|++++.    ++..+..+
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  283 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK  283 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence            44555555555555555432111110                   1111 244555555555555432    34444455


Q ss_pred             CCccEEECcCCcccccCChhhhcc-----CCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccc
Q 043317          401 SKLMTLDLRGNNLEGQIPDQICQL-----RRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIG  475 (700)
Q Consensus       401 ~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  475 (700)
                      ++|++|++++|.+++..+..+...     ++|+.|++++|.+++.....+....                          
T Consensus       284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l--------------------------  337 (461)
T 1z7x_W          284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL--------------------------  337 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH--------------------------
T ss_pred             CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH--------------------------
Confidence            555666665555544333333322     4566666666655432111111100                          


Q ss_pred             cccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccC-----cCCCcEEeCCC
Q 043317          476 TYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD-----LQKIRGLNLSH  550 (700)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~  550 (700)
                                                            ..++.|+.||+++|.+++..+..+..     .++|++|++++
T Consensus       338 --------------------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          338 --------------------------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  379 (461)
T ss_dssp             --------------------------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             --------------------------------------hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence                                                  11245555666666655443333332     45666666666


Q ss_pred             ccCcc----ccCcccccccCCCEEeCCCCcCcccCccccc-----CCCCCCeEeccCCcCc
Q 043317          551 NCLSG----SIPRSFSNLQMIESLDLSNNRLSGQIPAQLI-----ELNFLSNFNVSYNNLS  602 (700)
Q Consensus       551 N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~  602 (700)
                      |++++    .+|..+..+++|++||+++|++++.....+.     ....|+.|++.++.+.
T Consensus       380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            66664    5566666666666666666666643221111     1234555555555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=3.4e-31  Score=273.37  Aligned_cols=267  Identities=21%  Similarity=0.225  Sum_probs=140.3

Q ss_pred             cCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcc
Q 043317          259 SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS  338 (700)
Q Consensus       259 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  338 (700)
                      ++++|++++|.+++..+..+.++++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+.  ++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence            3344444444444333334444444444444444444444444444444444444444444 2222221  345555555


Q ss_pred             cCcCcccchhhccCCCCCCEEEccCccCcc--cCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccc
Q 043317          339 NNCLEGNIPVQLLNHRTLKLLSVSENYLSG--SMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG  415 (700)
Q Consensus       339 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~  415 (700)
                      +|.+++..+..+.++++|+.|++++|.++.  ..+..+ .+++|++|++++|+++. +|..+.  ++|++|++++|++++
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK  206 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence            555544444444445555555555554432  233333 45555555555555542 333322  556666666666665


Q ss_pred             cCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCc
Q 043317          416 QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP  495 (700)
Q Consensus       416 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (700)
                      ..|..+..+++|+.|++++|++++..+..+..                                                
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------------------  238 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------------------------------------------------  238 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------------------------------------------------
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChhhccC------------------------------------------------
Confidence            55556666666666666666665433333322                                                


Q ss_pred             ccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCccccc------ccCCCE
Q 043317          496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSN------LQMIES  569 (700)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~  569 (700)
                                          +++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|..      ...|+.
T Consensus       239 --------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~  297 (330)
T 1xku_A          239 --------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG  297 (330)
T ss_dssp             --------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSE
T ss_pred             --------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccc
Confidence                                245566666666666 55666666677777777777776655555543      356777


Q ss_pred             EeCCCCcCcc--cCcccccCCCCCCeEeccCCc
Q 043317          570 LDLSNNRLSG--QIPAQLIELNFLSNFNVSYNN  600 (700)
Q Consensus       570 L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~  600 (700)
                      |++++|++..  ..|..|..+..++.+++++|+
T Consensus       298 l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             EECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             eEeecCcccccccCccccccccceeEEEecccC
Confidence            7777777753  556677777777777777774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.6e-31  Score=275.94  Aligned_cols=287  Identities=22%  Similarity=0.242  Sum_probs=199.6

Q ss_pred             CCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEc
Q 043317          234 ELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDI  313 (700)
Q Consensus       234 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L  313 (700)
                      +++.++++++.++ .+|..+   .+++++|++++|.+.+..+..+.++++|++|++++|++++..|..+..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            3555666655554 233322   346666666666666665666666777777777777777666666777777777777


Q ss_pred             ccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcc--cCCCcc-CCCCCcEEEccCCcCc
Q 043317          314 SHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG--SMTSSF-NLSSLKHLYVQKNALS  390 (700)
Q Consensus       314 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~-~l~~L~~L~l~~n~l~  390 (700)
                      ++|+++ .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.++.  ..+..+ .+ +|++|++++|+++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            777776 3343333  567777777777776555567777777777777777753  444555 34 7777888888777


Q ss_pred             cCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCc
Q 043317          391 GPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLG  470 (700)
Q Consensus       391 ~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  470 (700)
                      + +|..+.  ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..                       
T Consensus       186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-----------------------  239 (332)
T 2ft3_A          186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-----------------------  239 (332)
T ss_dssp             S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-----------------------
T ss_pred             c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-----------------------
Confidence            4 454443  67888888888888777777888888888888888887655544433                       


Q ss_pred             ccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCC
Q 043317          471 FCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSH  550 (700)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  550 (700)
                                                                   +++|+.|++++|+++ .+|..+..+++|++|++++
T Consensus       240 ---------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          240 ---------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCS
T ss_pred             ---------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCC
Confidence                                                         366778888888888 6777788888888888888


Q ss_pred             ccCccccCcccccc------cCCCEEeCCCCcCc--ccCcccccCCCCCCeEeccCCc
Q 043317          551 NCLSGSIPRSFSNL------QMIESLDLSNNRLS--GQIPAQLIELNFLSNFNVSYNN  600 (700)
Q Consensus       551 N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~  600 (700)
                      |++++..+..|...      ..|+.|++++|++.  +..|.+|..++.|+.+++++|+
T Consensus       274 N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            88887777766653      56888999999887  6777888888889989888874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.98  E-value=1.7e-31  Score=275.69  Aligned_cols=287  Identities=22%  Similarity=0.276  Sum_probs=157.5

Q ss_pred             CcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcc
Q 043317          211 LLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE  290 (700)
Q Consensus       211 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  290 (700)
                      ++.++++++.++ .+|..+.  ++++.|++++|.+++..+.. +..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDD-FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhH-hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            444444444444 2333221  34444444444444322222 2334455555555555544444455555555555555


Q ss_pred             cCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCc--ccchhhccCCCCCCEEEccCccCcc
Q 043317          291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE--GNIPVQLLNHRTLKLLSVSENYLSG  368 (700)
Q Consensus       291 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~  368 (700)
                      +|+++ .+|..+.  ++|++|++++|++++..+..|..+++|++|++++|.++  +..+..+..+ +|+.|++++|.+++
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            55555 2233222  45666666666665554555566666666666666653  2444455555 66666666666665


Q ss_pred             cCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhh
Q 043317          369 SMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM  448 (700)
Q Consensus       369 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  448 (700)
                      .+....  ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+.. 
T Consensus       187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~-  262 (332)
T 2ft3_A          187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD-  262 (332)
T ss_dssp             CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG-
T ss_pred             cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc-
Confidence            443322  56666666666666555566666666666666666666555556666666666666666665 44443322 


Q ss_pred             hhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCc
Q 043317          449 LQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNE  528 (700)
Q Consensus       449 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  528 (700)
                                                                                         +++|+.|++++|.
T Consensus       263 -------------------------------------------------------------------l~~L~~L~l~~N~  275 (332)
T 2ft3_A          263 -------------------------------------------------------------------LKLLQVVYLHTNN  275 (332)
T ss_dssp             -------------------------------------------------------------------CTTCCEEECCSSC
T ss_pred             -------------------------------------------------------------------CccCCEEECCCCC
Confidence                                                                               2456666666666


Q ss_pred             CcccCCccccC------cCCCcEEeCCCccCc--cccCcccccccCCCEEeCCCCc
Q 043317          529 LTGNVPSEIGD------LQKIRGLNLSHNCLS--GSIPRSFSNLQMIESLDLSNNR  576 (700)
Q Consensus       529 l~~~~p~~~~~------l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~  576 (700)
                      +++..+..|..      ...|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            66555555543      245677777777776  5666777777777777777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.98  E-value=8e-31  Score=270.56  Aligned_cols=289  Identities=17%  Similarity=0.223  Sum_probs=171.8

Q ss_pred             CccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEE
Q 043317          185 FLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLD  264 (700)
Q Consensus       185 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  264 (700)
                      +++.++++++.+. .+|..+.   +.+++|++++|++++..+..|.++++|++|++++|.++                  
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------   89 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS------------------   89 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred             CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC------------------
Confidence            4555555555544 3444331   34555555555555444444555555555555555554                  


Q ss_pred             cCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcc
Q 043317          265 LSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG  344 (700)
Q Consensus       265 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  344 (700)
                             +..+..+..+++|++|++++|+++. +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus        90 -------~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  159 (330)
T 1xku_A           90 -------KISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS  159 (330)
T ss_dssp             -------CBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred             -------eeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence                   4444445555555555555555552 233222  456666666666665555556666666666666666642


Q ss_pred             --cchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhh
Q 043317          345 --NIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQIC  422 (700)
Q Consensus       345 --~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~  422 (700)
                        ..+..+..+++|++|++++|.++..+....  ++|++|++++|++++..|..+..+++|++|++++|++++..+..+.
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  237 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA  237 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred             cCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence              445556666666666666666665443332  5677777777777666666677777777777777777766666677


Q ss_pred             ccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEE
Q 043317          423 QLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEF  502 (700)
Q Consensus       423 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  502 (700)
                      .+++|++|++++|+++ .+|..+..                                                       
T Consensus       238 ~l~~L~~L~L~~N~l~-~lp~~l~~-------------------------------------------------------  261 (330)
T 1xku_A          238 NTPHLRELHLNNNKLV-KVPGGLAD-------------------------------------------------------  261 (330)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTT-------------------------------------------------------
T ss_pred             CCCCCCEEECCCCcCc-cCChhhcc-------------------------------------------------------
Confidence            7777777777777766 44443322                                                       


Q ss_pred             eeccccccccCccccccceEECCCCcCcccCCccccC------cCCCcEEeCCCccCcc--ccCcccccccCCCEEeCCC
Q 043317          503 VTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD------LQKIRGLNLSHNCLSG--SIPRSFSNLQMIESLDLSN  574 (700)
Q Consensus       503 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~  574 (700)
                                   +++|+.|++++|++++..+..|..      ...++.|++++|.+..  ..|..|..+..++.++|++
T Consensus       262 -------------l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~  328 (330)
T 1xku_A          262 -------------HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN  328 (330)
T ss_dssp             -------------CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred             -------------CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence                         255666777777777665555543      3667778888887753  5567778888888888887


Q ss_pred             Cc
Q 043317          575 NR  576 (700)
Q Consensus       575 N~  576 (700)
                      |+
T Consensus       329 N~  330 (330)
T 1xku_A          329 YK  330 (330)
T ss_dssp             --
T ss_pred             cC
Confidence            74

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1e-29  Score=264.79  Aligned_cols=283  Identities=17%  Similarity=0.135  Sum_probs=163.2

Q ss_pred             CCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEE
Q 043317          232 MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQL  311 (700)
Q Consensus       232 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  311 (700)
                      ++.....+.+++.++. +|..+   .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~~-iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS-IPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCSS-CCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCccc-ccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            3444556777777753 44433   3466777777777666555566666666666666666666556666666666666


Q ss_pred             EcccCcCCCCcchhhcCCCCCcEEEcccCcCcccch-hhccCCCCCCEEEccCc-cCcccCCCcc-CCCCCcEEEccCCc
Q 043317          312 DISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIP-VQLLNHRTLKLLSVSEN-YLSGSMTSSF-NLSSLKHLYVQKNA  388 (700)
Q Consensus       312 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~l~~L~~L~l~~n~  388 (700)
                      ++++|++++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++| .+++..+..+ .+++|++|++++|+
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            666666665544456666666666666666653222 24555666666666665 3444444444 45555555555555


Q ss_pred             CccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCC
Q 043317          389 LSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPP  468 (700)
Q Consensus       389 l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  468 (700)
                      +++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+..+..                     
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------  244 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------------  244 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------------
Confidence            55555555555555555555555554322223334555555555555554332221111                     


Q ss_pred             CcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeC
Q 043317          469 LGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNL  548 (700)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  548 (700)
                                                                                          ......++.+++
T Consensus       245 --------------------------------------------------------------------~~~~~~l~~l~L  256 (353)
T 2z80_A          245 --------------------------------------------------------------------GETNSLIKKFTF  256 (353)
T ss_dssp             ----------------------------------------------------------------------CCCCCCEEEE
T ss_pred             --------------------------------------------------------------------ccccchhhcccc
Confidence                                                                                112334455555


Q ss_pred             CCccCcc----ccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCC
Q 043317          549 SHNCLSG----SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD  607 (700)
Q Consensus       549 s~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  607 (700)
                      +++.+++    .+|..++++++|+.||+++|+++...+..|..+++|++|++++|++++.+|.
T Consensus       257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            5555543    3566677777777777777777744333357777888888888887776654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=264.34  Aligned_cols=283  Identities=17%  Similarity=0.162  Sum_probs=227.1

Q ss_pred             ccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEE
Q 043317          208 LKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFL  287 (700)
Q Consensus       208 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  287 (700)
                      ++.....+.+++.++ .+|..+.  ++|++|++++|++++..+.. +..+++|++|++++|.+++..+..+..+++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            556677899999998 5676554  58999999999998754433 4779999999999999999888899999999999


Q ss_pred             EcccCcccccccccccCCCCCcEEEcccCcCCCCcc-hhhcCCCCCcEEEcccC-cCcccchhhccCCCCCCEEEccCcc
Q 043317          288 YLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP-HWMGNFSNLEILLMSNN-CLEGNIPVQLLNHRTLKLLSVSENY  365 (700)
Q Consensus       288 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~  365 (700)
                      ++++|++++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            999999997766668999999999999999996544 47899999999999999 5776667889999999999999999


Q ss_pred             CcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhc---cCCCCEEecCCCccCCCC
Q 043317          366 LSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ---LRRLGMMDLSHNRFNGSI  441 (700)
Q Consensus       366 l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~  441 (700)
                      +++..+..+ .+++|++|++++|++....+..+..+++|++|++++|++++..+..+..   .+.++.++++++.+    
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l----  261 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI----  261 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC----
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc----
Confidence            999988877 8999999999999997443344556899999999999998765544332   23344444444333    


Q ss_pred             CchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccce
Q 043317          442 PSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG  521 (700)
Q Consensus       442 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~  521 (700)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (353)
T 2z80_A          262 --------------------------------------------------------------------------------  261 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317          522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP  582 (700)
Q Consensus       522 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  582 (700)
                         +++.+. .+|..++.+++|++|++++|+++...+..|+++++|++|++++|++++..|
T Consensus       262 ---~~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          262 ---TDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ---CHHHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ---cCcchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence               222222 456678888899999999999985444446899999999999999987665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=5e-29  Score=254.23  Aligned_cols=250  Identities=21%  Similarity=0.256  Sum_probs=183.3

Q ss_pred             EEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCccc--chhhccCCCCCCEEEccC
Q 043317          286 FLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGN--IPVQLLNHRTLKLLSVSE  363 (700)
Q Consensus       286 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~l~~  363 (700)
                      .++.+++.++ .+|..+.  +++++|++++|.++...+..|..+++|++|++++|.++..  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            4555555555 2333322  4666677777766644444566667777777777766522  245555667777777777


Q ss_pred             ccCcccCCCccCCCCCcEEEccCCcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCC-CC
Q 043317          364 NYLSGSMTSSFNLSSLKHLYVQKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNG-SI  441 (700)
Q Consensus       364 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~  441 (700)
                      |.+++.+.....+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++ ..
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            7766554443367777777777777765444 467777888888888888887777778888888888888888764 23


Q ss_pred             CchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccce
Q 043317          442 PSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG  521 (700)
Q Consensus       442 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~  521 (700)
                      |..+..                                                                    +++|+.
T Consensus       168 ~~~~~~--------------------------------------------------------------------l~~L~~  179 (306)
T 2z66_A          168 PDIFTE--------------------------------------------------------------------LRNLTF  179 (306)
T ss_dssp             CSCCTT--------------------------------------------------------------------CTTCCE
T ss_pred             hhHHhh--------------------------------------------------------------------CcCCCE
Confidence            433322                                                                    367888


Q ss_pred             EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCC-CCCeEeccCCc
Q 043317          522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN-FLSNFNVSYNN  600 (700)
Q Consensus       522 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~  600 (700)
                      |++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.||+++|++++..|..+..++ +|++|++++|+
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            99999999888888899999999999999999988787899999999999999999999999999885 89999999999


Q ss_pred             CcccCC
Q 043317          601 LSGLIP  606 (700)
Q Consensus       601 l~~~~p  606 (700)
                      +++..+
T Consensus       260 ~~~~c~  265 (306)
T 2z66_A          260 FACTCE  265 (306)
T ss_dssp             EECSGG
T ss_pred             eecccC
Confidence            986543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=6.4e-31  Score=294.41  Aligned_cols=299  Identities=14%  Similarity=0.072  Sum_probs=150.4

Q ss_pred             CCCCCCEEEccCCCCCccCchHHhhcCCC-CCEEEccCCcC-cc-cCCCCCCCCCCccEEeCCCCcCccccCh---hHHh
Q 043317          133 HQYDLKYLDLSLNNLVGDFPSWMLQNNTK-LEVLFLTNNSF-TG-NLRLPNTKHDFLHHLDASSNNFIGTLPQ---DMGT  206 (700)
Q Consensus       133 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l-~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~  206 (700)
                      .+++|++|+|++|.+++..+.++...+++ |++|++++|.- .. .++.....+++|++|++++|.+.+.-..   .+..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            56667777777776665444444322333 66666666541 10 0111112345555555555554433111   1223


Q ss_pred             hccCCcEEEccCCcCC----ccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccc---cccccccC
Q 043317          207 ILKKLLVLDISNNHFE----GNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFY---GQFFSKDL  279 (700)
Q Consensus       207 ~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~~~  279 (700)
                      .+++|++|++++|.++    +.++..+.++++|+.|++++|.+.+ ++ ..+..+++|++|+++.....   ...+..+.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            3566677777666665    2233344556666666666666654 33 23455666666666543221   12223445


Q ss_pred             CCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcc-hhhcCCCCCcEEEcccCcCcccchhhccCCCCCCE
Q 043317          280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP-HWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKL  358 (700)
Q Consensus       280 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  358 (700)
                      .+++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.++.....+++|++
T Consensus       268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence            5566666666654322 445555556666666666666543322 23455666666666633222223333345566666


Q ss_pred             EEccC-----------ccCcccCCCc-c-CCCCCcEEEccCCcCccCcchhhhC-CCCccEEECc----CCccccc----
Q 043317          359 LSVSE-----------NYLSGSMTSS-F-NLSSLKHLYVQKNALSGPIPDMLFR-SSKLMTLDLR----GNNLEGQ----  416 (700)
Q Consensus       359 L~l~~-----------n~l~~~~~~~-~-~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~N~l~~~----  416 (700)
                      |++++           |.+++..... . .+++|++|+++.|.+++..+..+.. +++|++|+++    .|.+++.    
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            66662           3333321111 1 3556666666555555544444443 5556666664    4444432    


Q ss_pred             -CChhhhccCCCCEEecCC
Q 043317          417 -IPDQICQLRRLGMMDLSH  434 (700)
Q Consensus       417 -~~~~~~~l~~L~~L~Ls~  434 (700)
                       ++..+..+++|+.|++++
T Consensus       427 ~~~~~~~~~~~L~~L~L~~  445 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYL  445 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEEC
T ss_pred             HHHHHHHhCCCCCEEEEec
Confidence             222244555666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=5.8e-31  Score=294.78  Aligned_cols=401  Identities=13%  Similarity=0.080  Sum_probs=220.3

Q ss_pred             chhccCCCCCCEEEeCcc--------CCcccc------------CCCCCCEEECCCCcCCcccchhccC-CC-CCCEEeC
Q 043317           12 LTGLANLTILQVLDLSGS--------SSNCLK------------YLSHLKVLDISHNQLSGSLSSTITS-LT-SLEYLDL   69 (700)
Q Consensus        12 p~~~~~l~~L~~L~Lsg~--------~~~~~~------------~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~L~L   69 (700)
                      +..+.++++|++|+|+|.        +|..++            .+++|++|+|++|.+++..+..+.. ++ +|++|++
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            345567888999999642        222222            6788888888888887766666655 33 4888888


Q ss_pred             CCCc-CCCCCChhhccCCCCCcEEEcccCcccccc---ccCCCCCCCcccEEEeeCCCCC-----CcChhhcCCCCCCEE
Q 043317           70 SYNN-FEGPCPLSSLANHSKLEVLLLSSTNNMLLV---KTENFLPTFQLKVLELANCSLN-----VVPTFLLHQYDLKYL  140 (700)
Q Consensus        70 s~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~~L~~L~L~~n~l~-----~~p~~l~~~~~L~~L  140 (700)
                      ++|. ++..........+++|++|++++|......   -......+++|++|++++|.++     .++..+..+++|++|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            8876 221100122346788888888887643221   0012345678888888888875     234445677888888


Q ss_pred             EccCCCCCccCchHHhhcCCCCCEEEccCCcCc---ccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEcc
Q 043317          141 DLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFT---GNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDIS  217 (700)
Q Consensus       141 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~  217 (700)
                      ++++|.+. .+|.. +..+++|++|+++.....   +.....+..+++|+.++++++.. +.+|..+. .+++|++|+++
T Consensus       226 ~L~~~~~~-~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~-~~~~L~~L~Ls  301 (592)
T 3ogk_B          226 KVGDFEIL-ELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP-FAAQIRKLDLL  301 (592)
T ss_dssp             ECSSCBGG-GGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG-GGGGCCEEEET
T ss_pred             eccCccHH-HHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHh-hcCCCcEEecC
Confidence            88888877 46644 457888888888753322   23334556667777777776532 24444333 36677777777


Q ss_pred             CCcCCccCC-ccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCC-----------cccccccccc-cCCCCCC
Q 043317          218 NNHFEGNIP-SSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD-----------NNFYGQFFSK-DLNLTQM  284 (700)
Q Consensus       218 ~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~~~~~-~~~l~~L  284 (700)
                      +|.+++... ..+..+++|+.|+++ +.+.+.....+...+++|++|++++           +.+++..... ...+++|
T Consensus       302 ~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L  380 (592)
T 3ogk_B          302 YALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL  380 (592)
T ss_dssp             TCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred             CCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence            777553322 234667777777776 4443333333445566677776662           3443321111 2235556


Q ss_pred             cEEEcccCcccccccccccC-CCCCcEEEcc----cCcCCCC-----cchhhcCCCCCcEEEcccCc--CcccchhhccC
Q 043317          285 EFLYLENNKFSGKIEEGLLN-STKLYQLDIS----HNFLSGH-----IPHWMGNFSNLEILLMSNNC--LEGNIPVQLLN  352 (700)
Q Consensus       285 ~~L~L~~n~l~~~~~~~~~~-~~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~  352 (700)
                      ++|+++.|.+++..+..+.. +++|+.|+++    .|.+++.     ++..+..+++|++|++++|.  +++.....+..
T Consensus       381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~  460 (592)
T 3ogk_B          381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ  460 (592)
T ss_dssp             SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred             eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence            66666555555444444433 5555555554    3444432     22234445555555554322  33322222221


Q ss_pred             CCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCcc-CcchhhhCCCCccEEECcCCccccc-CChhhhccCCCCEE
Q 043317          353 HRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSG-PIPDMLFRSSKLMTLDLRGNNLEGQ-IPDQICQLRRLGMM  430 (700)
Q Consensus       353 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L  430 (700)
                                            .+++|++|++++|++++ .++..+..+++|++|++++|++++. ++..+..+++|+.|
T Consensus       461 ----------------------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  518 (592)
T 3ogk_B          461 ----------------------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL  518 (592)
T ss_dssp             ----------------------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEE
T ss_pred             ----------------------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCee
Confidence                                  24445555555554443 2233334445555555555554432 22223345555555


Q ss_pred             ecCCCccCC
Q 043317          431 DLSHNRFNG  439 (700)
Q Consensus       431 ~Ls~N~l~~  439 (700)
                      ++++|++++
T Consensus       519 ~ls~n~it~  527 (592)
T 3ogk_B          519 WVQGYRASM  527 (592)
T ss_dssp             EEESCBCCT
T ss_pred             ECcCCcCCH
Confidence            555555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=5.7e-28  Score=259.40  Aligned_cols=248  Identities=21%  Similarity=0.237  Sum_probs=205.6

Q ss_pred             CcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccC
Q 043317          284 MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE  363 (700)
Q Consensus       284 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  363 (700)
                      ...++..+..++ .+|..+.  ++++.|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            456666776766 4455443  6788888888888877777888888888888888888877777888888888888888


Q ss_pred             ccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCC-cccccCChhhhccCCCCEEecCCCccCCCC
Q 043317          364 NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGN-NLEGQIPDQICQLRRLGMMDLSHNRFNGSI  441 (700)
Q Consensus       364 n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  441 (700)
                      |.+++..+..+ .+++|++|++++|+++...+..|..+++|++|++++| .+....+..|.++++|++|++++|+++ .+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence            88888777766 7888999999999888766778888899999999884 455455557889999999999999887 33


Q ss_pred             CchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccce
Q 043317          442 PSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG  521 (700)
Q Consensus       442 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~  521 (700)
                      |. +                                                                    ..+++|+.
T Consensus       201 ~~-~--------------------------------------------------------------------~~l~~L~~  211 (440)
T 3zyj_A          201 PN-L--------------------------------------------------------------------TPLIKLDE  211 (440)
T ss_dssp             CC-C--------------------------------------------------------------------TTCSSCCE
T ss_pred             cc-c--------------------------------------------------------------------CCCcccCE
Confidence            31 1                                                                    12478899


Q ss_pred             EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcC
Q 043317          522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL  601 (700)
Q Consensus       522 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  601 (700)
                      |+|++|.+++..|..|..+++|+.|+|++|++++..+..|.++++|+.|||++|++++..+..|..+++|+.|++++|++
T Consensus       212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            99999999999899999999999999999999999999999999999999999999988888899999999999999999


Q ss_pred             ccc
Q 043317          602 SGL  604 (700)
Q Consensus       602 ~~~  604 (700)
                      .+.
T Consensus       292 ~Cd  294 (440)
T 3zyj_A          292 NCN  294 (440)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1e-28  Score=251.92  Aligned_cols=273  Identities=20%  Similarity=0.191  Sum_probs=191.0

Q ss_pred             EEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCC--cchhhcCCCCCcEEEccc
Q 043317          262 FLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH--IPHWMGNFSNLEILLMSN  339 (700)
Q Consensus       262 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~  339 (700)
                      .++++++.++.... .+  .+++++|++++|+++...+..+..+++|++|++++|.++..  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcccCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            44555554443322 11  24566777777776654444566777777777777776632  255666677777777777


Q ss_pred             CcCcccchhhccCCCCCCEEEccCccCcccCC-Ccc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccc-c
Q 043317          340 NCLEGNIPVQLLNHRTLKLLSVSENYLSGSMT-SSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG-Q  416 (700)
Q Consensus       340 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~-~  416 (700)
                      |.+. .+|..+..+++|++|++++|.+++..+ ..+ .+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus        88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            7776 455567777788888888887777665 334 67888888888888877777778888888888888888876 5


Q ss_pred             CChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcc
Q 043317          417 IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQ  496 (700)
Q Consensus       417 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (700)
                      .|..+..+++|++|++++|++++..|..+..                                                 
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------------------------  197 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-------------------------------------------------  197 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTT-------------------------------------------------
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcC-------------------------------------------------
Confidence            6778888888888888888887655554433                                                 


Q ss_pred             cceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCccccccc-CCCEEeCCCC
Q 043317          497 QVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQ-MIESLDLSNN  575 (700)
Q Consensus       497 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N  575 (700)
                                         +++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..++ +|+.|+|++|
T Consensus       198 -------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          198 -------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             -------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             -------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence                               36678888888888877777788888999999999999888888888884 8999999999


Q ss_pred             cCcccCcc--cccCCCCCCeEeccCCcCcccCC
Q 043317          576 RLSGQIPA--QLIELNFLSNFNVSYNNLSGLIP  606 (700)
Q Consensus       576 ~l~~~~p~--~l~~l~~L~~L~ls~N~l~~~~p  606 (700)
                      ++++..+.  ....+...+.+.+..+.+.+..|
T Consensus       259 ~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p  291 (306)
T 2z66_A          259 DFACTCEHQSFLQWIKDQRQLLVEVERMECATP  291 (306)
T ss_dssp             CEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred             CeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence            88865331  11122233344455555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=6.3e-28  Score=260.01  Aligned_cols=249  Identities=19%  Similarity=0.242  Sum_probs=202.3

Q ss_pred             CcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccC
Q 043317          284 MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE  363 (700)
Q Consensus       284 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  363 (700)
                      ...++.++..++ .+|..+.  +++++|++++|.+++..|..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            445666666666 3444433  5788888888888877777788888888888888888877777788888888888888


Q ss_pred             ccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcC-CcccccCChhhhccCCCCEEecCCCccCCCC
Q 043317          364 NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRG-NNLEGQIPDQICQLRRLGMMDLSHNRFNGSI  441 (700)
Q Consensus       364 n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  441 (700)
                      |.+++.++..+ .+++|++|++++|+++...+..|..+++|++|++++ |.+....+..+..+++|++|++++|++++. 
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence            88887777766 688888888888888866666788888999999988 455544555788899999999999988742 


Q ss_pred             CchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccce
Q 043317          442 PSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG  521 (700)
Q Consensus       442 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~  521 (700)
                      |. +                                                                    ..+++|+.
T Consensus       212 ~~-~--------------------------------------------------------------------~~l~~L~~  222 (452)
T 3zyi_A          212 PN-L--------------------------------------------------------------------TPLVGLEE  222 (452)
T ss_dssp             CC-C--------------------------------------------------------------------TTCTTCCE
T ss_pred             cc-c--------------------------------------------------------------------cccccccE
Confidence            31 1                                                                    12477889


Q ss_pred             EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcC
Q 043317          522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL  601 (700)
Q Consensus       522 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  601 (700)
                      |+|++|.+++..|..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++
T Consensus       223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            99999999998899999999999999999999998899999999999999999999988888899999999999999998


Q ss_pred             cccC
Q 043317          602 SGLI  605 (700)
Q Consensus       602 ~~~~  605 (700)
                      .+..
T Consensus       303 ~CdC  306 (452)
T 3zyi_A          303 NCDC  306 (452)
T ss_dssp             ECST
T ss_pred             CCCC
Confidence            7543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=6.4e-28  Score=247.62  Aligned_cols=235  Identities=18%  Similarity=0.222  Sum_probs=180.9

Q ss_pred             CCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEE
Q 043317          281 LTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLS  360 (700)
Q Consensus       281 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  360 (700)
                      .++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            467788888888887 56666777888888888888877 67777777888888888888877 6677777777777777


Q ss_pred             ccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCC
Q 043317          361 VSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGS  440 (700)
Q Consensus       361 l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  440 (700)
                      +++|.+.+..+..+.     ..         ..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ 
T Consensus       157 L~~n~~~~~~p~~~~-----~~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          157 IRACPELTELPEPLA-----ST---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             EEEETTCCCCCSCSE-----EE---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             CCCCCCccccChhHh-----hc---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence            777776666554431     10         11123455778888888888887 677778888888888888888874 


Q ss_pred             CCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccc
Q 043317          441 IPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMV  520 (700)
Q Consensus       441 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~  520 (700)
                      +|..+..                                                                    +++|+
T Consensus       221 l~~~l~~--------------------------------------------------------------------l~~L~  232 (328)
T 4fcg_A          221 LGPAIHH--------------------------------------------------------------------LPKLE  232 (328)
T ss_dssp             CCGGGGG--------------------------------------------------------------------CTTCC
T ss_pred             Cchhhcc--------------------------------------------------------------------CCCCC
Confidence            4443333                                                                    36778


Q ss_pred             eEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCc
Q 043317          521 GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNN  600 (700)
Q Consensus       521 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  600 (700)
                      .|++++|.+.+.+|..++.+++|++|++++|++.+.+|..++++++|+.|+|++|++.+.+|..+..++.|+.+++..|.
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            88888888888888888888999999999988888888888999999999999999988999999999999999888776


Q ss_pred             Cc
Q 043317          601 LS  602 (700)
Q Consensus       601 l~  602 (700)
                      +.
T Consensus       313 ~~  314 (328)
T 4fcg_A          313 QA  314 (328)
T ss_dssp             SC
T ss_pred             HH
Confidence            65

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.4e-27  Score=245.19  Aligned_cols=235  Identities=16%  Similarity=0.205  Sum_probs=202.4

Q ss_pred             CCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEE
Q 043317          257 CISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILL  336 (700)
Q Consensus       257 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  336 (700)
                      .+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            579999999999998 56677888999999999999999 78899999999999999999999 7788999999999999


Q ss_pred             cccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccc
Q 043317          337 MSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG  415 (700)
Q Consensus       337 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~  415 (700)
                      +++|.+.+.+|..+...      .         ....+ ++++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus       157 L~~n~~~~~~p~~~~~~------~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          157 IRACPELTELPEPLAST------D---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEEETTCCCCCSCSEEE------C----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             CCCCCCccccChhHhhc------c---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence            99999888888766431      1         11223 5788888888888888 778888889999999999999984


Q ss_pred             cCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCc
Q 043317          416 QIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP  495 (700)
Q Consensus       416 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (700)
                       +|..+..+++|++|++++|++.+.+|..+.+                                                
T Consensus       221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------------------------------------------------  251 (328)
T 4fcg_A          221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGG------------------------------------------------  251 (328)
T ss_dssp             -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------------------------------------------------
T ss_pred             -CchhhccCCCCCEEECcCCcchhhhHHHhcC------------------------------------------------
Confidence             6667888999999999999888877766544                                                


Q ss_pred             ccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCC
Q 043317          496 QQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNN  575 (700)
Q Consensus       496 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  575 (700)
                                          +++|+.|++++|.+.+.+|..++.+++|++|+|++|++.+.+|+.++++++|+.+++..|
T Consensus       252 --------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          252 --------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             --------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             --------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence                                367888999999999999999999999999999999999999999999999999999987


Q ss_pred             cCcc
Q 043317          576 RLSG  579 (700)
Q Consensus       576 ~l~~  579 (700)
                      .+..
T Consensus       312 ~~~~  315 (328)
T 4fcg_A          312 LQAQ  315 (328)
T ss_dssp             GSCC
T ss_pred             HHHH
Confidence            7663

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=2.1e-29  Score=257.86  Aligned_cols=266  Identities=20%  Similarity=0.176  Sum_probs=194.2

Q ss_pred             cEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccC
Q 043317          261 WFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNN  340 (700)
Q Consensus       261 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  340 (700)
                      +..+++.+.+.......+..+++|++|++++|++++..|..+..+++|++|++++|++++..+  +..+++|++|++++|
T Consensus        13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            334444444444333444445566666666666666656666667777777777777665443  666777777777777


Q ss_pred             cCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChh
Q 043317          341 CLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQ  420 (700)
Q Consensus       341 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~  420 (700)
                      .+++..     ..++|++|++++|.+++..+..  +++|++|++++|++++..+..+..+++|++|++++|++++..+..
T Consensus        91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           91 YVQELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             EEEEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             cccccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            766322     2367777888877777765544  567888888888888777777888888999999999888777776


Q ss_pred             hh-ccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccce
Q 043317          421 IC-QLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVK  499 (700)
Q Consensus       421 ~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  499 (700)
                      +. .+++|++|++++|++++. |..                                                       
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~-~~~-------------------------------------------------------  187 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDV-KGQ-------------------------------------------------------  187 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEE-ECC-------------------------------------------------------
T ss_pred             HhhccCcCCEEECCCCcCccc-ccc-------------------------------------------------------
Confidence            64 688899999999988632 100                                                       


Q ss_pred             EEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCc-
Q 043317          500 VEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS-  578 (700)
Q Consensus       500 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-  578 (700)
                                    ..+++|+.|++++|.+++. |..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ 
T Consensus       188 --------------~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          188 --------------VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             --------------CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred             --------------cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence                          1146788899999999854 445888999999999999998 57778889999999999999998 


Q ss_pred             ccCcccccCCCCCCeEeccCC-cCcccCCC
Q 043317          579 GQIPAQLIELNFLSNFNVSYN-NLSGLIPD  607 (700)
Q Consensus       579 ~~~p~~l~~l~~L~~L~ls~N-~l~~~~p~  607 (700)
                      +.+|..+..++.|+.+++++| .++|..|.
T Consensus       252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             cCHHHHHhccccceEEECCCchhccCCchh
Confidence            788888899999999999854 66765553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=6.1e-28  Score=243.39  Aligned_cols=207  Identities=22%  Similarity=0.237  Sum_probs=106.4

Q ss_pred             CCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCc-CccCcchhhhCCCCccEEEC
Q 043317          331 NLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNA-LSGPIPDMLFRSSKLMTLDL  408 (700)
Q Consensus       331 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l  408 (700)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|+ +....|..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            44444444444443333334444444444444444444433333 44445555555554 44333444555555555555


Q ss_pred             cCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccccc
Q 043317          409 RGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCK  488 (700)
Q Consensus       409 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (700)
                      ++|++++..|..+..+++|++|++++|++++..+..+..                                         
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------------------  151 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-----------------------------------------  151 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-----------------------------------------
Confidence            555555444455555555555555555554332222221                                         


Q ss_pred             ccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCC
Q 043317          489 RDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIE  568 (700)
Q Consensus       489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  568 (700)
                                                 +++|+.|++++|.+++..+..+..+++|++|++++|++++..|..|+++++|+
T Consensus       152 ---------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          152 ---------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             ---------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence                                       24455555555555544444555566666666666666655566666666666


Q ss_pred             EEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccC
Q 043317          569 SLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLI  605 (700)
Q Consensus       569 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  605 (700)
                      .|++++|++++..+..+..+++|++|++++|++.+..
T Consensus       205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            6666666666555555666666666666666665433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=6.5e-28  Score=243.19  Aligned_cols=251  Identities=21%  Similarity=0.222  Sum_probs=216.6

Q ss_pred             cEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCc
Q 043317          285 EFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSEN  364 (700)
Q Consensus       285 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  364 (700)
                      +.++.+++.++. +|..+  .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            678899998884 45443  479999999999999877788999999999999999999888999999999999999999


Q ss_pred             c-CcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCC
Q 043317          365 Y-LSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP  442 (700)
Q Consensus       365 ~-l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  442 (700)
                      . ++...+..+ .+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            7 888777777 89999999999999998888899999999999999999998777789999999999999999985444


Q ss_pred             chhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceE
Q 043317          443 SCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGL  522 (700)
Q Consensus       443 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L  522 (700)
                      ..+..                                                                    +++|+.|
T Consensus       171 ~~~~~--------------------------------------------------------------------l~~L~~L  182 (285)
T 1ozn_A          171 RAFRG--------------------------------------------------------------------LHSLDRL  182 (285)
T ss_dssp             TTTTT--------------------------------------------------------------------CTTCCEE
T ss_pred             HHhcC--------------------------------------------------------------------ccccCEE
Confidence            33333                                                                    4788999


Q ss_pred             ECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc
Q 043317          523 DLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS  602 (700)
Q Consensus       523 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  602 (700)
                      ++++|.+++..|..++.+++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .-...++.+..+.|.+.
T Consensus       183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~  261 (285)
T 1ozn_A          183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVP  261 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCB
T ss_pred             ECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccc
Confidence            99999999999999999999999999999999877788999999999999999998655432 12234555667778888


Q ss_pred             ccCCC
Q 043317          603 GLIPD  607 (700)
Q Consensus       603 ~~~p~  607 (700)
                      +..|.
T Consensus       262 c~~p~  266 (285)
T 1ozn_A          262 CSLPQ  266 (285)
T ss_dssp             EEESG
T ss_pred             cCCch
Confidence            77775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=3.5e-29  Score=255.68  Aligned_cols=248  Identities=21%  Similarity=0.246  Sum_probs=174.8

Q ss_pred             CCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCC-CCcchhhc-------CCCCCcEEEcccCcCcccchhhc--
Q 043317          281 LTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLS-GHIPHWMG-------NFSNLEILLMSNNCLEGNIPVQL--  350 (700)
Q Consensus       281 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--  350 (700)
                      .++|+.|++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       ++++|++|++++|++++.+|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            34566666666666  444444433  666677766663 33444443       56777777777777776666655  


Q ss_pred             cCCCCCCEEEccCccCcccCCCcc-CC-----CCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccccc--CChhh-
Q 043317          351 LNHRTLKLLSVSENYLSGSMTSSF-NL-----SSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQ--IPDQI-  421 (700)
Q Consensus       351 ~~~~~L~~L~l~~n~l~~~~~~~~-~l-----~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~--~~~~~-  421 (700)
                      ..+++|++|++++|.+++. +..+ .+     ++|++|++++|++++..|..+..+++|++|++++|++.+.  .+..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            6677777777777777766 4433 33     7888888888888877777888888888888888887654  23344 


Q ss_pred             -hccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceE
Q 043317          422 -CQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKV  500 (700)
Q Consensus       422 -~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  500 (700)
                       ..+++|++|++++|++++ ++.....+.                                                   
T Consensus       197 ~~~l~~L~~L~L~~N~l~~-~~~~~~~~~---------------------------------------------------  224 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMET-PSGVCSALA---------------------------------------------------  224 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCC-HHHHHHHHH---------------------------------------------------
T ss_pred             hccCCCCCEEECCCCcCcc-hHHHHHHHH---------------------------------------------------
Confidence             778888888888888762 111110000                                                   


Q ss_pred             EEeeccccccccCccccccceEECCCCcCcccCC-ccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcc
Q 043317          501 EFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVP-SEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG  579 (700)
Q Consensus       501 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  579 (700)
                                   ..++.|+.|++++|.+++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|+.|||++|++++
T Consensus       225 -------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          225 -------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR  288 (312)
T ss_dssp             -------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS
T ss_pred             -------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC
Confidence                         124678888999998887765 45667889999999999998 6777766  789999999999987


Q ss_pred             cCcccccCCCCCCeEeccCCcCcc
Q 043317          580 QIPAQLIELNFLSNFNVSYNNLSG  603 (700)
Q Consensus       580 ~~p~~l~~l~~L~~L~ls~N~l~~  603 (700)
                      . |. +..+++|++|++++|++++
T Consensus       289 ~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          289 N-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             C-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             C-hh-HhhCCCCCEEeccCCCCCC
Confidence            6 65 8889999999999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=249.10  Aligned_cols=247  Identities=22%  Similarity=0.215  Sum_probs=135.2

Q ss_pred             CcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcc
Q 043317          235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDIS  314 (700)
Q Consensus       235 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls  314 (700)
                      .+.++.++..++. +|..+   .++++.|++++|++.+..+..+.++++|++|++++|++++..+..|..+++|++|+++
T Consensus        45 ~~~v~c~~~~l~~-iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLRE-VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSS-CCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCc-CCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4456666665543 44322   2455555555555555555555555555555555555554444555555555555555


Q ss_pred             cCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCc-CccCc
Q 043317          315 HNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNA-LSGPI  393 (700)
Q Consensus       315 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~  393 (700)
                      +|++++..+..|..+++|++|++++|.+.+..+..|..+                       ++|++|++++|. +....
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-----------------------~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI-----------------------PSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC-----------------------TTCCEEECCCCTTCCEEC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC-----------------------cccCEeCCCCCCCcceeC
Confidence            555554444445555555555555555544434444444                       455555555422 22222


Q ss_pred             chhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccc
Q 043317          394 PDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCY  473 (700)
Q Consensus       394 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  473 (700)
                      +..|..+++|++|++++|+++ .+| .+..+++|+.|++++|++++..|..|.+                          
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------  229 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG--------------------------  229 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT--------------------------
T ss_pred             cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhcc--------------------------
Confidence            234455555555555555555 233 2455566666666666665444443332                          


Q ss_pred             cccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccC
Q 043317          474 IGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL  553 (700)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  553 (700)
                                                                +++|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus       230 ------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          230 ------------------------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             ------------------------------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             ------------------------------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence                                                      24555666666666666666666667777777777777


Q ss_pred             ccccCcccccccCCCEEeCCCCcCc
Q 043317          554 SGSIPRSFSNLQMIESLDLSNNRLS  578 (700)
Q Consensus       554 ~~~~p~~~~~l~~L~~L~Ls~N~l~  578 (700)
                      ++..+..|..+++|+.|+|++|++.
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CccChhHhccccCCCEEEcCCCCcc
Confidence            7666666666777777777777664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=3.1e-29  Score=280.84  Aligned_cols=379  Identities=16%  Similarity=0.094  Sum_probs=193.8

Q ss_pred             CCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCc
Q 043317          133 HQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLL  212 (700)
Q Consensus       133 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  212 (700)
                      .+++|++|++++|.+++..+..+...+++|++|++++|.                       .+.......+...+++|+
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-----------------------~~~~~~l~~~~~~~~~L~  159 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-----------------------GFSTDGLAAIAATCRNLK  159 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE-----------------------EEEHHHHHHHHHHCTTCC
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC-----------------------CCCHHHHHHHHHhCCCCC
Confidence            344555555555555544444333345555555555442                       222111223333356666


Q ss_pred             EEEccCCcCCccCCcccc----CCCCCcEEEccCcc--CCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcE
Q 043317          213 VLDISNNHFEGNIPSSVG----EMKELIILHLSKNN--FSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEF  286 (700)
Q Consensus       213 ~L~L~~n~i~~~~~~~l~----~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  286 (700)
                      +|++++|.+++..+..+.    .+++|++|++++|.  +.......+...+++|++|++++|...+..+..+..+++|++
T Consensus       160 ~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  239 (594)
T 2p1m_B          160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE  239 (594)
T ss_dssp             EEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSE
T ss_pred             EEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceE
Confidence            666666665543333332    45567777777665  211111222334567777777766322224455556667777


Q ss_pred             EEcccC-------cccccccccccCCCCCcEE-EcccCcCCCCcchhhcCCCCCcEEEcccCcCcccch-hhccCCCCCC
Q 043317          287 LYLENN-------KFSGKIEEGLLNSTKLYQL-DISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIP-VQLLNHRTLK  357 (700)
Q Consensus       287 L~L~~n-------~l~~~~~~~~~~~~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~  357 (700)
                      |++..+       .+.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++... ..+..+++|+
T Consensus       240 L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~  317 (594)
T 2p1m_B          240 LGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQ  317 (594)
T ss_dssp             EECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCC
T ss_pred             cccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcC
Confidence            764433       2332 23356666777776 3333222 2344444556777777777777653322 2245667777


Q ss_pred             EEEccCccCcccCCC-cc-CCCCCcEEEccC---------CcCccCcchhhh-CCCCccEEECcCCcccccCChhhh-cc
Q 043317          358 LLSVSENYLSGSMTS-SF-NLSSLKHLYVQK---------NALSGPIPDMLF-RSSKLMTLDLRGNNLEGQIPDQIC-QL  424 (700)
Q Consensus       358 ~L~l~~n~l~~~~~~-~~-~l~~L~~L~l~~---------n~l~~~~~~~~~-~~~~L~~L~l~~N~l~~~~~~~~~-~l  424 (700)
                      .|++++| +...... .. .+++|++|++++         +.+++.....+. .+++|++|+++.|.+++..+..+. .+
T Consensus       318 ~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~  396 (594)
T 2p1m_B          318 RLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR  396 (594)
T ss_dssp             EEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             EEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC
Confidence            7777766 3322111 11 366777777732         344432222222 367777777777777655555554 47


Q ss_pred             CCCCEEecC--C----CccCCCCCc-hhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCccc
Q 043317          425 RRLGMMDLS--H----NRFNGSIPS-CFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQ  497 (700)
Q Consensus       425 ~~L~~L~Ls--~----N~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (700)
                      ++|+.|+++  +    +.+++.... .+..+                                                 
T Consensus       397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l-------------------------------------------------  427 (594)
T 2p1m_B          397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI-------------------------------------------------  427 (594)
T ss_dssp             TTCCEEEEEESSTTCCCTTTCCCTHHHHHHH-------------------------------------------------
T ss_pred             CCcceeEeecccCCCcccccCCchhhHHHHH-------------------------------------------------
Confidence            777777777  2    333311100 11100                                                 


Q ss_pred             ceEEEeeccccccccCccccccceEECCCCcCcccCCccccC-cCCCcEEeCCCccCccccCccc-ccccCCCEEeCCCC
Q 043317          498 VKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD-LQKIRGLNLSHNCLSGSIPRSF-SNLQMIESLDLSNN  575 (700)
Q Consensus       498 l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N  575 (700)
                                     ...+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ .++++|+.|+|++|
T Consensus       428 ---------------~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          428 ---------------VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC  491 (594)
T ss_dssp             ---------------HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred             ---------------HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence                           01134566666655 444444444443 5666666666666654444333 45666666666666


Q ss_pred             cCcccCcc-cccCCCCCCeEeccCCcCc
Q 043317          576 RLSGQIPA-QLIELNFLSNFNVSYNNLS  602 (700)
Q Consensus       576 ~l~~~~p~-~l~~l~~L~~L~ls~N~l~  602 (700)
                      ++++..+. ....+++|++|++++|+++
T Consensus       492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          492 PFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             SCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            66543333 2233566666666666653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.2e-26  Score=249.96  Aligned_cols=248  Identities=21%  Similarity=0.201  Sum_probs=131.6

Q ss_pred             CcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcc
Q 043317          235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDIS  314 (700)
Q Consensus       235 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls  314 (700)
                      ...++.++..++. +|..+   .+++++|++++|++.+..+..+.++++|+.|++++|++++..+..|..+++|++|+++
T Consensus        56 ~~~v~c~~~~l~~-iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcCc-cCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3455666555543 33322   2455555555555555555555555555555555555555544555555555555555


Q ss_pred             cCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcc
Q 043317          315 HNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIP  394 (700)
Q Consensus       315 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~  394 (700)
                      +|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|                      |.+....+
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~----------------------~~l~~i~~  189 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL----------------------KKLEYISE  189 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC----------------------TTCCEECT
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC----------------------CCccccCh
Confidence            55555444444555555555555555555433444444445555554442                      22222222


Q ss_pred             hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccc
Q 043317          395 DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYI  474 (700)
Q Consensus       395 ~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  474 (700)
                      ..+..+++|++|++++|++++ +| .+..+++|+.|++++|++++..|..|.+                           
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------------  240 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHG---------------------------  240 (452)
T ss_dssp             TTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTT---------------------------
T ss_pred             hhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccC---------------------------
Confidence            234455555555555555553 22 3455555556666665555444433332                           


Q ss_pred             ccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCc
Q 043317          475 GTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLS  554 (700)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  554 (700)
                                                               +++|+.|++++|.+++..|..|..+++|+.|+|++|+++
T Consensus       241 -----------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          241 -----------------------------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             -----------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             -----------------------------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence                                                     244555666666666556666666666666666666666


Q ss_pred             cccCcccccccCCCEEeCCCCcCc
Q 043317          555 GSIPRSFSNLQMIESLDLSNNRLS  578 (700)
Q Consensus       555 ~~~p~~~~~l~~L~~L~Ls~N~l~  578 (700)
                      +..+..|..+++|+.|+|++|++.
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          280 SLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ccChHHhccccCCCEEEccCCCcC
Confidence            555566666666666666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=2.6e-28  Score=249.26  Aligned_cols=251  Identities=21%  Similarity=0.222  Sum_probs=154.7

Q ss_pred             cccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc-ccccccC-------CCCCCcEEEcccCccccccc
Q 043317          228 SVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG-QFFSKDL-------NLTQMEFLYLENNKFSGKIE  299 (700)
Q Consensus       228 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~  299 (700)
                      .++..++|+.|++++|.+  .+|..+...   |+.|++++|.+.. ..+..+.       ++++|++|++++|++++.+|
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            345667888889999988  567665432   7777888887743 3333332       45566666666666665555


Q ss_pred             ccc--cCCCCCcEEEcccCcCCCCcchhhcCC-----CCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCC
Q 043317          300 EGL--LNSTKLYQLDISHNFLSGHIPHWMGNF-----SNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTS  372 (700)
Q Consensus       300 ~~~--~~~~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  372 (700)
                      ..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|++.+..+..+.                     
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~---------------------  170 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR---------------------  170 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC---------------------
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc---------------------
Confidence            544  5556666666666666544 4444443     4455555555544444434444                     


Q ss_pred             ccCCCCCcEEEccCCcCccC--cchhh--hCCCCccEEECcCCcccc---cCChhhhccCCCCEEecCCCccCCCCCchh
Q 043317          373 SFNLSSLKHLYVQKNALSGP--IPDML--FRSSKLMTLDLRGNNLEG---QIPDQICQLRRLGMMDLSHNRFNGSIPSCF  445 (700)
Q Consensus       373 ~~~l~~L~~L~l~~n~l~~~--~~~~~--~~~~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  445 (700)
                        .+++|++|++++|++.+.  .+..+  ..+++|++|++++|++++   .....+..+++|++|++++|++++..|...
T Consensus       171 --~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          171 --VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             --CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             --cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence              455555555555555433  22233  556677777777777662   112334566777777777777765443211


Q ss_pred             hhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECC
Q 043317          446 TNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLS  525 (700)
Q Consensus       446 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls  525 (700)
                      .                                                                   ..+++|+.|+|+
T Consensus       249 ~-------------------------------------------------------------------~~l~~L~~L~Ls  261 (312)
T 1wwl_A          249 C-------------------------------------------------------------------DWPSQLNSLNLS  261 (312)
T ss_dssp             C-------------------------------------------------------------------CCCTTCCEEECT
T ss_pred             h-------------------------------------------------------------------hhcCCCCEEECC
Confidence            0                                                                   113567778888


Q ss_pred             CCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcc
Q 043317          526 CNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG  579 (700)
Q Consensus       526 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  579 (700)
                      +|.++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|++++|++++
T Consensus       262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          262 FTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            88887 6666665  7888888888888865 55 7888888888888888875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.7e-27  Score=242.27  Aligned_cols=244  Identities=20%  Similarity=0.195  Sum_probs=207.2

Q ss_pred             CCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEcc
Q 043317          283 QMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVS  362 (700)
Q Consensus       283 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  362 (700)
                      .++..+++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34556777777776666666777899999999999998888999999999999999999987665  8999999999999


Q ss_pred             CccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCC
Q 043317          363 ENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP  442 (700)
Q Consensus       363 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  442 (700)
                      +|.+++..+    .++|++|++++|++++..+..   +++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus        89 ~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           89 NNYVQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SSEEEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             CCccccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            999987653    489999999999998765543   6789999999999998888899999999999999999986544


Q ss_pred             chhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceE
Q 043317          443 SCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGL  522 (700)
Q Consensus       443 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L  522 (700)
                      ..+..                                                                   .++.|+.|
T Consensus       162 ~~~~~-------------------------------------------------------------------~l~~L~~L  174 (317)
T 3o53_A          162 AELAA-------------------------------------------------------------------SSDTLEHL  174 (317)
T ss_dssp             GGGGG-------------------------------------------------------------------GTTTCCEE
T ss_pred             HHHhh-------------------------------------------------------------------ccCcCCEE
Confidence            43321                                                                   24788999


Q ss_pred             ECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc
Q 043317          523 DLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS  602 (700)
Q Consensus       523 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  602 (700)
                      ++++|.+++. | ....+++|++|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++
T Consensus       175 ~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          175 NLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             ECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            9999999966 3 23458999999999999996 5556999999999999999999 56888999999999999999998


Q ss_pred             -ccCC
Q 043317          603 -GLIP  606 (700)
Q Consensus       603 -~~~p  606 (700)
                       +.+|
T Consensus       251 ~~~~~  255 (317)
T 3o53_A          251 CGTLR  255 (317)
T ss_dssp             HHHHH
T ss_pred             CcCHH
Confidence             5444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.6e-27  Score=258.06  Aligned_cols=235  Identities=21%  Similarity=0.192  Sum_probs=145.4

Q ss_pred             CCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEc
Q 043317          282 TQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV  361 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  361 (700)
                      ++|+.|++++|.+++..|..+..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+     .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            355555666655555555555566666666666666554443  5556666666666666653221     256666666


Q ss_pred             cCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhh-ccCCCCEEecCCCccCCC
Q 043317          362 SENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQIC-QLRRLGMMDLSHNRFNGS  440 (700)
Q Consensus       362 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~  440 (700)
                      ++|.+++.++..  +++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus       107 ~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          107 ANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             CSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             cCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            666666555442  45677777777777666666666677777777777777766666664 567777777777766532


Q ss_pred             CCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccc
Q 043317          441 IPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMV  520 (700)
Q Consensus       441 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~  520 (700)
                      .+.                                                                      ..++.|+
T Consensus       185 ~~~----------------------------------------------------------------------~~l~~L~  194 (487)
T 3oja_A          185 KGQ----------------------------------------------------------------------VVFAKLK  194 (487)
T ss_dssp             ECC----------------------------------------------------------------------CCCTTCC
T ss_pred             ccc----------------------------------------------------------------------ccCCCCC
Confidence            110                                                                      0135666


Q ss_pred             eEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCc-ccCcccccCCCCCCeEecc
Q 043317          521 GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS-GQIPAQLIELNFLSNFNVS  597 (700)
Q Consensus       521 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls  597 (700)
                      .|+|++|.+++.+| .+..+++|+.|+|++|.+++ +|..++.+++|+.|++++|+++ +.+|..+..++.|+.++++
T Consensus       195 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          195 TLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            67777777765433 36667777777777777764 5556666777777777777776 5566666666666666664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.2e-25  Score=247.94  Aligned_cols=269  Identities=24%  Similarity=0.265  Sum_probs=170.0

Q ss_pred             cCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEE
Q 043317          209 KKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLY  288 (700)
Q Consensus       209 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  288 (700)
                      .+++.|++++|.++ .+|..+.  ++|+.|++++|.++. +|.    .+++|++|++++|++++...    .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEE
Confidence            36899999999988 5676555  789999999998874 443    36788888888888765332    567788888


Q ss_pred             cccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcc
Q 043317          289 LENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG  368 (700)
Q Consensus       289 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  368 (700)
                      +++|++++. |.   .+++|+.|++++|++++ +|..   +++|++|++++|.+++ +|.   .+.+|+.|++++|.+++
T Consensus       108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence            888877753 33   45677777887777774 3432   3677777777777764 332   24566777777777666


Q ss_pred             cCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhh
Q 043317          369 SMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM  448 (700)
Q Consensus       369 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  448 (700)
                      .+   ..+++|+.|++++|++++ +|..   .++|+.|++++|.++ .+|.   .+++|+.|++++|++++ +|.     
T Consensus       176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp~-----  238 (622)
T 3g06_A          176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LPV-----  238 (622)
T ss_dssp             CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CCC-----
T ss_pred             Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CCC-----
Confidence            44   234666667777666663 3322   356666666666666 3332   23556666666666653 220     


Q ss_pred             hhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCc
Q 043317          449 LQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNE  528 (700)
Q Consensus       449 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~  528 (700)
                                                                                        .+++|+.|++++|.
T Consensus       239 ------------------------------------------------------------------~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          239 ------------------------------------------------------------------LPSELKELMVSGNR  252 (622)
T ss_dssp             ------------------------------------------------------------------CCTTCCEEECCSSC
T ss_pred             ------------------------------------------------------------------CCCcCcEEECCCCC
Confidence                                                                              02445566666666


Q ss_pred             CcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCC
Q 043317          529 LTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN  589 (700)
Q Consensus       529 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  589 (700)
                      ++ .+|.   .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|++++.+|..+..++
T Consensus       253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            66 3333   4456666666666666 4556666666666666666666666665554443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.4e-25  Score=245.57  Aligned_cols=266  Identities=26%  Similarity=0.285  Sum_probs=151.4

Q ss_pred             cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCC
Q 043317          113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS  192 (700)
Q Consensus       113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  192 (700)
                      ++++|++++|.++.+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|++++ +|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            47777777777777776654  67777777777776 5665    45677777777777663 332   45666666666


Q ss_pred             CCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc
Q 043317          193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG  272 (700)
Q Consensus       193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  272 (700)
                      +|.+. .+|.    .+++|+.|++++|++++ +|..   +++|++|++++|++++ +|.    .+++|+.|++++|.+++
T Consensus       110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          110 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             SCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC
T ss_pred             CCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCCC
Confidence            66665 3444    24567777777776663 3432   3566667777666654 221    24556666666666654


Q ss_pred             ccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccC
Q 043317          273 QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN  352 (700)
Q Consensus       273 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  352 (700)
                      ..    ..+++|+.|++++|++++ +|..   .++|+.|++++|.++. +|.   .+++|++|++++|.+++ +|   ..
T Consensus       176 l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~  239 (622)
T 3g06_A          176 LP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VL  239 (622)
T ss_dssp             CC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CC
T ss_pred             Cc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CC
Confidence            22    234556666666666653 2221   2456666666666552 232   13455566666665553 33   23


Q ss_pred             CCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhc
Q 043317          353 HRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQ  423 (700)
Q Consensus       353 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~  423 (700)
                      +++|+.|++++|.++..+.   .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..
T Consensus       240 l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          240 PSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             CCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence            4455555555555554333   3445555555555555 44555555555555555555555555444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=1.1e-28  Score=276.30  Aligned_cols=228  Identities=14%  Similarity=0.044  Sum_probs=135.2

Q ss_pred             ccCCcEE-EccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccccc-ccccCCCCCCc
Q 043317          208 LKKLLVL-DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF-FSKDLNLTQME  285 (700)
Q Consensus       208 l~~L~~L-~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  285 (700)
                      +++|+.+ .+.+... ..++..+..+++|+.|++++|.+++.....+...+++|++|++++| +.... +.....+++|+
T Consensus       264 ~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~  341 (594)
T 2p1m_B          264 CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR  341 (594)
T ss_dssp             CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred             CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence            5566666 2322211 2233334455666666666666544333333445666666666666 32221 11122356677


Q ss_pred             EEEccc---------Cccccccccccc-CCCCCcEEEcccCcCCCCcchhhc-CCCCCcEEEcc--c----CcCcc----
Q 043317          286 FLYLEN---------NKFSGKIEEGLL-NSTKLYQLDISHNFLSGHIPHWMG-NFSNLEILLMS--N----NCLEG----  344 (700)
Q Consensus       286 ~L~L~~---------n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~----  344 (700)
                      +|++.+         +.+++.....+. .+++|+.|+++.|.+++..+..+. .+++|+.|+++  +    +.+++    
T Consensus       342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~  421 (594)
T 2p1m_B          342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD  421 (594)
T ss_dssp             EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred             EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence            776632         344433222232 367788887777777755555454 47788888887  3    44441    


Q ss_pred             -cchhhccCCCCCCEEEccCccCcccCCCcc--CCCCCcEEEccCCcCccCcchhh-hCCCCccEEECcCCcccccCCh-
Q 043317          345 -NIPVQLLNHRTLKLLSVSENYLSGSMTSSF--NLSSLKHLYVQKNALSGPIPDML-FRSSKLMTLDLRGNNLEGQIPD-  419 (700)
Q Consensus       345 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~N~l~~~~~~-  419 (700)
                       .++..+..+++|+.|++++ .+++.....+  .+++|++|++++|.+++..+..+ ..+++|++|++++|++++.... 
T Consensus       422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~  500 (594)
T 2p1m_B          422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA  500 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred             hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence             2233356677888888876 5554333333  37788888888888866555444 5688888888888888644433 


Q ss_pred             hhhccCCCCEEecCCCccC
Q 043317          420 QICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       420 ~~~~l~~L~~L~Ls~N~l~  438 (700)
                      ....+++|+.|++++|+++
T Consensus       501 ~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          501 NASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             TGGGGGGSSEEEEESSCCB
T ss_pred             HHHhCCCCCEEeeeCCCCC
Confidence            3445788888999888774

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-26  Score=249.92  Aligned_cols=223  Identities=23%  Similarity=0.220  Sum_probs=195.3

Q ss_pred             CCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEE
Q 043317          304 NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLY  383 (700)
Q Consensus       304 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~  383 (700)
                      .+++|++|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++.++    .++|++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence            34589999999999999888999999999999999999997666  8999999999999999997664    38999999


Q ss_pred             ccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCc
Q 043317          384 VQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL  463 (700)
Q Consensus       384 l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  463 (700)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..                
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----------------  166 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----------------  166 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----------------
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----------------
Confidence            999999976554   4588999999999999988989999999999999999998766655532                


Q ss_pred             cCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCC
Q 043317          464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKI  543 (700)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  543 (700)
                                                                         .++.|+.|+|++|.+++..+  ...+++|
T Consensus       167 ---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L  193 (487)
T 3oja_A          167 ---------------------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKL  193 (487)
T ss_dssp             ---------------------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTC
T ss_pred             ---------------------------------------------------hCCcccEEecCCCccccccc--cccCCCC
Confidence                                                               14788999999999997733  4469999


Q ss_pred             cEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc-ccCC
Q 043317          544 RGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS-GLIP  606 (700)
Q Consensus       544 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~p  606 (700)
                      +.|+|++|++++.+| .+..+++|+.|||++|++++ +|..+..+++|+.|++++|++. +.+|
T Consensus       194 ~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          194 KTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             CEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             CEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            999999999997544 59999999999999999996 6778999999999999999998 4444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.1e-25  Score=225.76  Aligned_cols=212  Identities=22%  Similarity=0.231  Sum_probs=119.6

Q ss_pred             CCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECc
Q 043317          331 NLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLR  409 (700)
Q Consensus       331 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  409 (700)
                      +|++|++++|.+++..+..+.++++|++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34444444444443333344444444444444444444444333 44455555555555544444445555555555555


Q ss_pred             CCcccccCChhhhccCCCCEEecCCCccCCC-CCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccccc
Q 043317          410 GNNLEGQIPDQICQLRRLGMMDLSHNRFNGS-IPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCK  488 (700)
Q Consensus       410 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (700)
                      +|++.+..+..+..+++|++|++++|++++. +|..+.+                                         
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-----------------------------------------  147 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----------------------------------------  147 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence            5555544444455555555555555555432 2333322                                         


Q ss_pred             ccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCc----EEeCCCccCccccCcccccc
Q 043317          489 RDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR----GLNLSHNCLSGSIPRSFSNL  564 (700)
Q Consensus       489 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l  564 (700)
                                                 +++|+.|++++|++++..+..+..+.+|+    +|++++|++++..+..+.. 
T Consensus       148 ---------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-  199 (276)
T 2z62_A          148 ---------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-  199 (276)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-
T ss_pred             ---------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-
Confidence                                       24455566666666555555555555555    6777777777655555443 


Q ss_pred             cCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCC
Q 043317          565 QMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQY  611 (700)
Q Consensus       565 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  611 (700)
                      .+|+.|++++|++++..+..+..+++|++|++++|++++..|...++
T Consensus       200 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l  246 (276)
T 2z62_A          200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  246 (276)
T ss_dssp             CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred             CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence            47888888888888776667788888888888888888776654333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.9e-24  Score=216.71  Aligned_cols=211  Identities=21%  Similarity=0.219  Sum_probs=163.7

Q ss_pred             CCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEc
Q 043317          306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYV  384 (700)
Q Consensus       306 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l  384 (700)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            467777777777776666677777777777777777776666677777788888888888777776666 7788888888


Q ss_pred             cCCcCccCcchhhhCCCCccEEECcCCccccc-CChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCc
Q 043317          385 QKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQ-IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL  463 (700)
Q Consensus       385 ~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  463 (700)
                      ++|++++..+..+..+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+..+..             
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------------  174 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-------------  174 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT-------------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh-------------
Confidence            88888766666778888888888888888763 5888888899999999999888665555555421             


Q ss_pred             cCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccc-eEECCCCcCcccCCccccCcCC
Q 043317          464 SIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMV-GLDLSCNELTGNVPSEIGDLQK  542 (700)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~  542 (700)
                                                                          ++.+. .|++++|.+++..+..+.. .+
T Consensus       175 ----------------------------------------------------L~~l~l~L~ls~n~l~~~~~~~~~~-~~  201 (276)
T 2z62_A          175 ----------------------------------------------------MPLLNLSLDLSLNPMNFIQPGAFKE-IR  201 (276)
T ss_dssp             ----------------------------------------------------CTTCCEEEECCSSCCCEECTTSSCS-CC
T ss_pred             ----------------------------------------------------ccccceeeecCCCcccccCccccCC-Cc
Confidence                                                                12232 6899999999776665554 48


Q ss_pred             CcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317          543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP  582 (700)
Q Consensus       543 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  582 (700)
                      |++|++++|++++..+..|+++++|+.|++++|++++..|
T Consensus       202 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            9999999999998777788999999999999999997544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=5.2e-24  Score=212.50  Aligned_cols=204  Identities=24%  Similarity=0.270  Sum_probs=143.9

Q ss_pred             CcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcC
Q 043317          332 LEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRG  410 (700)
Q Consensus       332 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  410 (700)
                      .+.++++++.++ .+|..+.  ++++.|++++|.+++..+..+ .+++|++|++++|+++...+..|..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            444555555544 2333221  345555555555555555444 566666666666666644444556667777777777


Q ss_pred             CcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccccccc
Q 043317          411 NNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRD  490 (700)
Q Consensus       411 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (700)
                      |++++..+..+..+++|++|++++|++++..+..|..                                           
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------  131 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-------------------------------------------  131 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence            7777655566677777777777777776544443332                                           


Q ss_pred             CCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEE
Q 043317          491 MFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESL  570 (700)
Q Consensus       491 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  570 (700)
                                               +++|+.|++++|.+++..+..|+.+++|++|++++|++++..+..|.++++|+.|
T Consensus       132 -------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  186 (270)
T 2o6q_A          132 -------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL  186 (270)
T ss_dssp             -------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             -------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence                                     3667778888888887666778888999999999999998777788999999999


Q ss_pred             eCCCCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317          571 DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP  606 (700)
Q Consensus       571 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  606 (700)
                      +|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             ECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            999999998777788899999999999999986554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.7e-23  Score=206.31  Aligned_cols=204  Identities=23%  Similarity=0.274  Sum_probs=151.3

Q ss_pred             CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEcc
Q 043317          307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQ  385 (700)
Q Consensus       307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~  385 (700)
                      ..+.++++++.++ .+|..+.  +++++|++++|++++..+..+..+++|++|++++|.++...+..+ .+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            4556666666666 3443332  456667777766665555566667777777777777776666665 57777777787


Q ss_pred             CCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccC
Q 043317          386 KNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSI  465 (700)
Q Consensus       386 ~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  465 (700)
                      +|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..                  
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------  155 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK------------------  155 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC------------------
Confidence            77777666666777888888888888888777777888888888888888887544333332                  


Q ss_pred             CCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcE
Q 043317          466 FPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRG  545 (700)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  545 (700)
                                                                        +++|+.|++++|.+++..+..|..+++|++
T Consensus       156 --------------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          156 --------------------------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             --------------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             --------------------------------------------------CcccceeEecCCcCcEeChhHhccCCCcCE
Confidence                                                              367888888888888777778889999999


Q ss_pred             EeCCCccCccccCcccccccCCCEEeCCCCcCcccC
Q 043317          546 LNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQI  581 (700)
Q Consensus       546 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  581 (700)
                      |++++|++++..+..|..+++|+.|+|++|++....
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            999999999777778999999999999999987543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=4.6e-24  Score=213.06  Aligned_cols=203  Identities=19%  Similarity=0.263  Sum_probs=146.7

Q ss_pred             cCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEE
Q 043317          327 GNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTL  406 (700)
Q Consensus       327 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  406 (700)
                      ..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. +....+++|++|++++|++++..+..+..+++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            344555555555555542 2 2345555666666666665543 222256677777777777776666666777778888


Q ss_pred             ECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccc
Q 043317          407 DLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEV  486 (700)
Q Consensus       407 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (700)
                      ++++|++++..+..+..+++|++|++++|++++..+..+..                                       
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------------------------------  155 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK---------------------------------------  155 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------------------
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc---------------------------------------
Confidence            88888777666666777888888888888777544433332                                       


Q ss_pred             ccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccC
Q 043317          487 CKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM  566 (700)
Q Consensus       487 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  566 (700)
                                                   +++|+.|++++|++++..+..++.+++|++|++++|++++..|..++.+++
T Consensus       156 -----------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          156 -----------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  206 (272)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             -----------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence                                         366778888888888777777888999999999999999888888899999


Q ss_pred             CCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCC
Q 043317          567 IESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD  607 (700)
Q Consensus       567 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  607 (700)
                      |+.|++++|++.+..       +.|+.+++++|.++|.+|.
T Consensus       207 L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          207 LQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             CCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBC
T ss_pred             CCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccC
Confidence            999999999888654       4688899999999999986

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.9e-23  Score=210.23  Aligned_cols=204  Identities=21%  Similarity=0.194  Sum_probs=120.4

Q ss_pred             ccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcE
Q 043317          302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKH  381 (700)
Q Consensus       302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~  381 (700)
                      +.+++++++++++++.++ .+|..+.  ++++.|++++|.+++..+..+..+++|+.|++++|.+++..+. ..+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence            456677777777777777 3443332  4677777777777766666677777777777777766654432 24555555


Q ss_pred             EEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCC
Q 043317          382 LYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGG  461 (700)
Q Consensus       382 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~  461 (700)
                      |++++|+++ .+|..+..+++|++|++++|++++..+..|..+++                                   
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~-----------------------------------  125 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-----------------------------------  125 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-----------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC-----------------------------------
Confidence            555555554 34444444455555555555554433344444444                                   


Q ss_pred             CccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcC
Q 043317          462 ELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQ  541 (700)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  541 (700)
                                                                               |+.|+|++|++++..+..|..++
T Consensus       126 ---------------------------------------------------------L~~L~L~~N~l~~~~~~~~~~l~  148 (290)
T 1p9a_G          126 ---------------------------------------------------------LQELYLKGNELKTLPPGLLTPTP  148 (290)
T ss_dssp             ---------------------------------------------------------CCEEECTTSCCCCCCTTTTTTCT
T ss_pred             ---------------------------------------------------------CCEEECCCCCCCccChhhccccc
Confidence                                                                     44455555555544445555566


Q ss_pred             CCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcc
Q 043317          542 KIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG  603 (700)
Q Consensus       542 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  603 (700)
                      +|+.|+|++|++++..+..|.++++|+.|+|++|+++ .+|..+..+..|+.+++++|++.+
T Consensus       149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            6666666666666555555566666666666666666 445555556666666666666653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=3.9e-23  Score=207.90  Aligned_cols=206  Identities=23%  Similarity=0.215  Sum_probs=168.1

Q ss_pred             ccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCE
Q 043317          350 LLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGM  429 (700)
Q Consensus       350 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  429 (700)
                      +.++++++.++++++.++..++..  .++++.|++++|++++..+..+..+++|++|++++|.+++..+.  ..+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence            456677778888887777665544  36788999999999887788899999999999999999865443  78899999


Q ss_pred             EecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccc
Q 043317          430 MDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYE  509 (700)
Q Consensus       430 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  509 (700)
                      |++++|+++ .+|..+..                                                              
T Consensus        82 L~Ls~N~l~-~l~~~~~~--------------------------------------------------------------   98 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQT--------------------------------------------------------------   98 (290)
T ss_dssp             EECCSSCCS-SCCCCTTT--------------------------------------------------------------
T ss_pred             EECCCCcCC-cCchhhcc--------------------------------------------------------------
Confidence            999999987 44543322                                                              


Q ss_pred             cccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCC
Q 043317          510 LYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN  589 (700)
Q Consensus       510 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  589 (700)
                            +++|+.|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..++
T Consensus        99 ------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  172 (290)
T 1p9a_G           99 ------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE  172 (290)
T ss_dssp             ------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred             ------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence                  47789999999999988889999999999999999999988888899999999999999999988777889999


Q ss_pred             CCCeEeccCCcCcccCCCCCCCCCcCCCccCCCcCCcCc
Q 043317          590 FLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGP  628 (700)
Q Consensus       590 ~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gn~~lcg~  628 (700)
                      +|++|++++|+++...+.......+......||++.|.+
T Consensus       173 ~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          173 NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence            999999999999954444444444455556677777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=1.2e-24  Score=227.05  Aligned_cols=176  Identities=22%  Similarity=0.197  Sum_probs=90.8

Q ss_pred             EEcCCcccccccccccCCCCCCcEEEcccCccccccc----ccccCCC-CCcEEEcccCcCCCCcchhhcCC-----CCC
Q 043317          263 LDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIE----EGLLNST-KLYQLDISHNFLSGHIPHWMGNF-----SNL  332 (700)
Q Consensus       263 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L  332 (700)
                      ++++.|.+++.++..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566666666665555555556666666666665444    4455555 56666666666665555555443     566


Q ss_pred             cEEEcccCcCcccchhhc----cCC-CCCCEEEccCccCcccCCCcc-----C-CCCCcEEEccCCcCccCcc----hhh
Q 043317          333 EILLMSNNCLEGNIPVQL----LNH-RTLKLLSVSENYLSGSMTSSF-----N-LSSLKHLYVQKNALSGPIP----DML  397 (700)
Q Consensus       333 ~~L~L~~n~l~~~~~~~~----~~~-~~L~~L~l~~n~l~~~~~~~~-----~-l~~L~~L~l~~n~l~~~~~----~~~  397 (700)
                      ++|++++|.+++..+..+    ..+ ++|++|++++|.+++.....+     . .++|++|++++|++++..+    ..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            666666666654444432    222 455555555555554443322     1 2355555555555543222    222


Q ss_pred             hCCC-CccEEECcCCcccccCChhhhc----c-CCCCEEecCCCccC
Q 043317          398 FRSS-KLMTLDLRGNNLEGQIPDQICQ----L-RRLGMMDLSHNRFN  438 (700)
Q Consensus       398 ~~~~-~L~~L~l~~N~l~~~~~~~~~~----l-~~L~~L~Ls~N~l~  438 (700)
                      ...+ +|++|++++|++++..+..+..    + ++|+.|++++|++.
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            3333 5555555555554444333322    2 35555555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.9e-23  Score=208.60  Aligned_cols=210  Identities=20%  Similarity=0.190  Sum_probs=164.9

Q ss_pred             ccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCc
Q 043317          302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLK  380 (700)
Q Consensus       302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~  380 (700)
                      ...+++|+.|++++|.++..  ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+ .+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            44566777777777776632  246677777777777777764 2 357777788888888888887777666 778888


Q ss_pred             EEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccC
Q 043317          381 HLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFG  460 (700)
Q Consensus       381 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~  460 (700)
                      +|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..             
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------  179 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-------------  179 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC-------------
Confidence            8888888888777777888888999999999888777777888899999999999888655544433             


Q ss_pred             CCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCc
Q 043317          461 GELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDL  540 (700)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  540 (700)
                                                                             +++|+.|++++|.+++..|..++.+
T Consensus       180 -------------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l  204 (272)
T 3rfs_A          180 -------------------------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRL  204 (272)
T ss_dssp             -------------------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -------------------------------------------------------CccCCEEECCCCcCCccCHHHHhCC
Confidence                                                                   3678889999999998888888999


Q ss_pred             CCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCC
Q 043317          541 QKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNF  590 (700)
Q Consensus       541 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  590 (700)
                      ++|+.|++++|.+.+.       ++.|+.|+++.|+++|.+|.+++.+..
T Consensus       205 ~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          205 TSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             cCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            9999999999998854       457899999999999999988766543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=2.6e-23  Score=205.01  Aligned_cols=212  Identities=20%  Similarity=0.189  Sum_probs=162.9

Q ss_pred             CCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCC
Q 043317          355 TLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH  434 (700)
Q Consensus       355 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  434 (700)
                      ..+.++++++.++..+...  .++++.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            4566777777777655443  25788888888888877777888888999999999998887787888899999999999


Q ss_pred             CccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCc
Q 043317          435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGS  514 (700)
Q Consensus       435 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  514 (700)
                      |++++..+..|..                                                                   
T Consensus        93 n~l~~~~~~~~~~-------------------------------------------------------------------  105 (251)
T 3m19_A           93 NQLASLPLGVFDH-------------------------------------------------------------------  105 (251)
T ss_dssp             SCCCCCCTTTTTT-------------------------------------------------------------------
T ss_pred             CcccccChhHhcc-------------------------------------------------------------------
Confidence            9888555444433                                                                   


Q ss_pred             cccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 043317          515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNF  594 (700)
Q Consensus       515 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  594 (700)
                       +++|+.|+|++|.+++..+..|..+++|++|+|++|++++..+..|+++++|+.|+|++|++++..|..+..+++|++|
T Consensus       106 -l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          106 -LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             -cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence             3678889999999997777788999999999999999998777789999999999999999998888899999999999


Q ss_pred             eccCCcCcccCCCCCCCCCcC------CCccCCCcCCcCcCCCCCCCCC
Q 043317          595 NVSYNNLSGLIPDKGQYSTFD------ESSYRGNLYLCGPTINKSCNSA  637 (700)
Q Consensus       595 ~ls~N~l~~~~p~~~~~~~~~------~~~~~gn~~lcg~~~~~~c~~~  637 (700)
                      ++++|++++..+...++..|-      .....|+ .+|+.|....|..+
T Consensus       185 ~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          185 TLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             ECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             EeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            999999997755433332221      1112233 36666777778755

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=1.4e-24  Score=226.50  Aligned_cols=199  Identities=20%  Similarity=0.176  Sum_probs=84.0

Q ss_pred             EccCccCCCCCchHHHhcCCcCcEEEcCCcccccccc----cccCCCC-CCcEEEcccCcccccccccccCC-----CCC
Q 043317          239 HLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFF----SKDLNLT-QMEFLYLENNKFSGKIEEGLLNS-----TKL  308 (700)
Q Consensus       239 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~-----~~L  308 (700)
                      +++.|.+++.+|. +....++|++|++++|.+++..+    ..+..++ +|++|++++|++++..+..+..+     ++|
T Consensus         4 ~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            4 KLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             ECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             ccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4444444443332 22223335555555555444433    3344444 45555555555544434333332     455


Q ss_pred             cEEEcccCcCCCCcchhhc----CC-CCCcEEEcccCcCcccchhhcc----C-CCCCCEEEccCccCcccCCCcc----
Q 043317          309 YQLDISHNFLSGHIPHWMG----NF-SNLEILLMSNNCLEGNIPVQLL----N-HRTLKLLSVSENYLSGSMTSSF----  374 (700)
Q Consensus       309 ~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~~~~~~----~-~~~L~~L~l~~n~l~~~~~~~~----  374 (700)
                      ++|++++|.+++..+..+.    .+ ++|++|++++|.+++..+..+.    . ..+|++|++++|.+++.....+    
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            5555555555443333222    22 4455555555555443333221    1 2345555555555443222111    


Q ss_pred             -CCC-CCcEEEccCCcCccCcchhhh----CC-CCccEEECcCCccccc----CChhhhc-cCCCCEEecCCCccC
Q 043317          375 -NLS-SLKHLYVQKNALSGPIPDMLF----RS-SKLMTLDLRGNNLEGQ----IPDQICQ-LRRLGMMDLSHNRFN  438 (700)
Q Consensus       375 -~l~-~L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~l~~N~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~  438 (700)
                       ..+ +|++|++++|++++..+..+.    .+ ++|++|++++|++++.    ++..+.. .++|++|++++|+++
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence             122 455555555555443333222    22 3455555555554431    2223332 224555555555444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1e-24  Score=229.87  Aligned_cols=91  Identities=20%  Similarity=0.199  Sum_probs=60.4

Q ss_pred             ccccceEECCCCcCc----ccCCccccCcCCCcEEeCCCccCccc----cCccccc--ccCCCEEeCCCCcCcc----cC
Q 043317          516 LNYMVGLDLSCNELT----GNVPSEIGDLQKIRGLNLSHNCLSGS----IPRSFSN--LQMIESLDLSNNRLSG----QI  581 (700)
Q Consensus       516 l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~  581 (700)
                      +++|+.|+|++|.++    +.+|..+..+++|++|+|++|++++.    +|..+..  +++|+.|+|++|++++    .+
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l  294 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  294 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence            356666777777764    45566667777777777777777654    4555533  6777777777777776    36


Q ss_pred             cccc-cCCCCCCeEeccCCcCcccCC
Q 043317          582 PAQL-IELNFLSNFNVSYNNLSGLIP  606 (700)
Q Consensus       582 p~~l-~~l~~L~~L~ls~N~l~~~~p  606 (700)
                      |..+ .++++|++|++++|++++..|
T Consensus       295 ~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          295 KTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHhcCCCceEEEccCCcCCcchh
Confidence            6665 456777777777777775543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=4.7e-23  Score=210.09  Aligned_cols=81  Identities=31%  Similarity=0.377  Sum_probs=56.4

Q ss_pred             cccceEECCCCcCcccCCccccCc---CCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCe
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDL---QKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSN  593 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  593 (700)
                      ++|+.|||++|.+++..|..+..+   ++|++|+|++|+++ .+|..+.  ++|+.|||++|++++. |. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            556667777777776666666655   57777777777777 5566553  6777888888877754 33 566777888


Q ss_pred             EeccCCcCc
Q 043317          594 FNVSYNNLS  602 (700)
Q Consensus       594 L~ls~N~l~  602 (700)
                      |++++|+++
T Consensus       299 L~L~~N~l~  307 (310)
T 4glp_A          299 LTLDGNPFL  307 (310)
T ss_dssp             EECSSTTTS
T ss_pred             EECcCCCCC
Confidence            888888776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=5.8e-23  Score=209.40  Aligned_cols=227  Identities=20%  Similarity=0.228  Sum_probs=183.1

Q ss_pred             CCCcEEEcccCcccccccc---cccCCCCCcEEEcccCcCCCCcchhh--cCCCCCcEEEcccCcCcccch----hhccC
Q 043317          282 TQMEFLYLENNKFSGKIEE---GLLNSTKLYQLDISHNFLSGHIPHWM--GNFSNLEILLMSNNCLEGNIP----VQLLN  352 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~  352 (700)
                      ..++.+.+.++.++...-.   .+..+++|++|++++|.+++..|..+  ..+++|++|++++|.+.+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4578888888887632111   12234679999999999999888887  889999999999999987544    44567


Q ss_pred             CCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccC--c--chhhhCCCCccEEECcCCcccccCCh----hhhc
Q 043317          353 HRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGP--I--PDMLFRSSKLMTLDLRGNNLEGQIPD----QICQ  423 (700)
Q Consensus       353 ~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~N~l~~~~~~----~~~~  423 (700)
                      +++|++|++++|.+++..+..+ .+++|++|++++|++.+.  +  +..+..+++|++|++++|+++. ++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            9999999999999999888887 899999999999998652  2  2234678999999999999973 333    3578


Q ss_pred             cCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEe
Q 043317          424 LRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFV  503 (700)
Q Consensus       424 l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  503 (700)
                      +++|++|++++|++.+..|..+..+                                                       
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~-------------------------------------------------------  247 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRC-------------------------------------------------------  247 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSC-------------------------------------------------------
T ss_pred             CCCCCEEECCCCCCCccchhhHHhc-------------------------------------------------------
Confidence            8999999999999998777665443                                                       


Q ss_pred             eccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcc
Q 043317          504 TKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG  579 (700)
Q Consensus       504 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  579 (700)
                                ..+++|+.|+|++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus       248 ----------~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          248 ----------MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ----------CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             ----------cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence                      11368899999999999 6777775  7999999999999964 43 6889999999999999974

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.7e-23  Score=216.43  Aligned_cols=87  Identities=17%  Similarity=0.231  Sum_probs=50.0

Q ss_pred             cccceEECCCCc-CcccCCccccCcCCCcEEeCCCcc-CccccCcccccccCCCEEeCCCCcCcccCcccccCC-CCCCe
Q 043317          517 NYMVGLDLSCNE-LTGNVPSEIGDLQKIRGLNLSHNC-LSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIEL-NFLSN  593 (700)
Q Consensus       517 ~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~  593 (700)
                      ++|+.|++++|. +++..+..+..+++|++|++++|. ++......++++++|+.|++++| ++.   ..+..+ ..+..
T Consensus       222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~  297 (336)
T 2ast_B          222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPH  297 (336)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTT
T ss_pred             CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcc
Confidence            455555666555 444555566666777777777764 22222224666777777777777 332   123333 23556


Q ss_pred             EeccCCcCcccCCC
Q 043317          594 FNVSYNNLSGLIPD  607 (700)
Q Consensus       594 L~ls~N~l~~~~p~  607 (700)
                      |++++|++++..|.
T Consensus       298 L~l~~n~l~~~~~~  311 (336)
T 2ast_B          298 LQINCSHFTTIARP  311 (336)
T ss_dssp             SEESCCCSCCTTCS
T ss_pred             eEEecccCccccCC
Confidence            66777777776664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=1.7e-22  Score=197.62  Aligned_cols=129  Identities=18%  Similarity=0.197  Sum_probs=66.1

Q ss_pred             CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCc-CcccchhhccCCCCCCEEEccC-ccCcccCCCcc-CCCCCcEEE
Q 043317          307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNC-LEGNIPVQLLNHRTLKLLSVSE-NYLSGSMTSSF-NLSSLKHLY  383 (700)
Q Consensus       307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~-~l~~L~~L~  383 (700)
                      ++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..+ .+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666654444455556666666666664 5544444555555555555555 55555544444 455555555


Q ss_pred             ccCCcCccCcchhhhCCCCcc---EEECcCC-cccccCChhhhccCCCC-EEecCCCcc
Q 043317          384 VQKNALSGPIPDMLFRSSKLM---TLDLRGN-NLEGQIPDQICQLRRLG-MMDLSHNRF  437 (700)
Q Consensus       384 l~~n~l~~~~~~~~~~~~~L~---~L~l~~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l  437 (700)
                      +++|++++ +|. +..+++|+   +|++++| ++++..+..|..+++|+ .|++++|++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence            55555543 333 44444444   4555544 44433333444444444 444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.9e-23  Score=220.16  Aligned_cols=243  Identities=21%  Similarity=0.248  Sum_probs=178.6

Q ss_pred             ccChhHHhhccCCcEEEccCCcCCccCC----ccccCCCCCcEEEccCccC---CCCCchHH------HhcCCcCcEEEc
Q 043317          199 TLPQDMGTILKKLLVLDISNNHFEGNIP----SSVGEMKELIILHLSKNNF---SEDFSTPF------LTGCISLWFLDL  265 (700)
Q Consensus       199 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~L~~n~l---~~~~~~~~------~~~~~~L~~L~L  265 (700)
                      .++..+.. +++|++|++++|.+....+    ..+..+++|++|++++|.+   ++.+|..+      +..+++|++|++
T Consensus        23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            34444444 6678888888887775433    3356778888888887543   33444443      246788888888


Q ss_pred             CCccccc----ccccccCCCCCCcEEEcccCccccccccccc----CC---------CCCcEEEcccCcCC-CCcc---h
Q 043317          266 SDNNFYG----QFFSKDLNLTQMEFLYLENNKFSGKIEEGLL----NS---------TKLYQLDISHNFLS-GHIP---H  324 (700)
Q Consensus       266 ~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~---------~~L~~L~Ls~n~l~-~~~~---~  324 (700)
                      ++|.+.+    .++..+..+++|++|++++|.++...+..+.    .+         ++|++|++++|+++ +.++   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            8888876    4556667788888888888888654443333    33         88999999999887 3444   4


Q ss_pred             hhcCCCCCcEEEcccCcCcc-----cchhhccCCCCCCEEEccCccCc----ccCCCcc-CCCCCcEEEccCCcCccC--
Q 043317          325 WMGNFSNLEILLMSNNCLEG-----NIPVQLLNHRTLKLLSVSENYLS----GSMTSSF-NLSSLKHLYVQKNALSGP--  392 (700)
Q Consensus       325 ~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~-~l~~L~~L~l~~n~l~~~--  392 (700)
                      .+..+++|++|++++|.+..     ..+..+..+++|+.|++++|.++    ...+..+ .+++|++|++++|++++.  
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            66778899999999998872     34447788899999999999985    3344444 788999999999998765  


Q ss_pred             --cchhhhC--CCCccEEECcCCcccc----cCChhh-hccCCCCEEecCCCccCCCCC
Q 043317          393 --IPDMLFR--SSKLMTLDLRGNNLEG----QIPDQI-CQLRRLGMMDLSHNRFNGSIP  442 (700)
Q Consensus       393 --~~~~~~~--~~~L~~L~l~~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~~p  442 (700)
                        ++..+..  +++|++|++++|.+++    .+|..+ .++++|+.|++++|++++..+
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence              5666644  8999999999999987    477777 668999999999999987664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=1.1e-22  Score=210.21  Aligned_cols=253  Identities=17%  Similarity=0.193  Sum_probs=200.9

Q ss_pred             ccEEeCCCCcCccccChhHHhhc--cCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEE
Q 043317          186 LHHLDASSNNFIGTLPQDMGTIL--KKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFL  263 (700)
Q Consensus       186 L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  263 (700)
                      ++.++++++.+.   +..+.. +  ++++.|++++|.+.+..+. +..+++|++|++++|.+++......+..+++|++|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             heeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            677888877765   333333 4  7899999999999876665 66799999999999998765233445779999999


Q ss_pred             EcCCcccccccccccCCCCCCcEEEcccC-ccccc-ccccccCCCCCcEEEcccC-cCCCC-cchhhcCCC-CCcEEEcc
Q 043317          264 DLSDNNFYGQFFSKDLNLTQMEFLYLENN-KFSGK-IEEGLLNSTKLYQLDISHN-FLSGH-IPHWMGNFS-NLEILLMS  338 (700)
Q Consensus       264 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~-~L~~L~L~  338 (700)
                      ++++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            99999998888888889999999999999 67753 5666888999999999999 88864 577788999 99999999


Q ss_pred             cC--cCc-ccchhhccCCCCCCEEEccCcc-CcccCCCcc-CCCCCcEEEccCCc-CccCcchhhhCCCCccEEECcCCc
Q 043317          339 NN--CLE-GNIPVQLLNHRTLKLLSVSENY-LSGSMTSSF-NLSSLKHLYVQKNA-LSGPIPDMLFRSSKLMTLDLRGNN  412 (700)
Q Consensus       339 ~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~N~  412 (700)
                      +|  .++ +.++..+..+++|+.|++++|. +++..+..+ .+++|++|++++|. +.......+..+++|++|++++| 
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            99  455 4567778889999999999999 666555555 78999999999995 33222236788999999999999 


Q ss_pred             ccccCChhhhcc-CCCCEEecCCCccCCCCCchhhh
Q 043317          413 LEGQIPDQICQL-RRLGMMDLSHNRFNGSIPSCFTN  447 (700)
Q Consensus       413 l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~  447 (700)
                      ++.   ..+..+ ..++.|++++|++++..|..++.
T Consensus       283 i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          283 VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence            432   234444 34777889999999988877664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=6.6e-22  Score=193.50  Aligned_cols=195  Identities=19%  Similarity=0.213  Sum_probs=144.6

Q ss_pred             CCcEEEcccCcCcccchhhccCCCCCCEEEccCcc-CcccCCCcc-CCCCCcEEEccC-CcCccCcchhhhCCCCccEEE
Q 043317          331 NLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENY-LSGSMTSSF-NLSSLKHLYVQK-NALSGPIPDMLFRSSKLMTLD  407 (700)
Q Consensus       331 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~  407 (700)
                      ++++|++++|++++..+..+.++++|++|++++|. +++..+..+ ++++|++|++++ |++++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            78888888888886666678888888888888886 777777666 788888888887 888766666777888888888


Q ss_pred             CcCCcccccCChhhhccCCCC---EEecCCC-ccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccc
Q 043317          408 LRGNNLEGQIPDQICQLRRLG---MMDLSHN-RFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLD  483 (700)
Q Consensus       408 l~~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (700)
                      +++|++++ +|. +..+++|+   +|++++| ++++..+..|.+                                    
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~------------------------------------  153 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG------------------------------------  153 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT------------------------------------
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc------------------------------------
Confidence            88888875 554 77777777   8888888 776444333332                                    


Q ss_pred             cccccccCCCCcccceEEEeeccccccccCccccccc-eEECCCCcCcccCCccccCcCCCcEEeCCCcc-CccccCccc
Q 043317          484 LEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMV-GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNC-LSGSIPRSF  561 (700)
Q Consensus       484 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~  561 (700)
                                                      ++.|+ .|++++|+++...+..+.. ++|++|++++|+ +++..+..|
T Consensus       154 --------------------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~  200 (239)
T 2xwt_C          154 --------------------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAF  200 (239)
T ss_dssp             --------------------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTT
T ss_pred             --------------------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHh
Confidence                                            35677 7888888887444444444 788888888884 886667778


Q ss_pred             ccc-cCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 043317          562 SNL-QMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN  599 (700)
Q Consensus       562 ~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  599 (700)
                      +++ ++|+.||+++|++++..+.   .++.|+.|+++++
T Consensus       201 ~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          201 GGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             TTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             hccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence            888 8888888888888854333   5677788888765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.1e-21  Score=199.21  Aligned_cols=126  Identities=21%  Similarity=0.203  Sum_probs=60.6

Q ss_pred             cCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEE
Q 043317          303 LNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHL  382 (700)
Q Consensus       303 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L  382 (700)
                      ..+++|++|++++|.++. +| .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++.. ....+++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL  112 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence            345566666666666653 23 35556666666666666653322  555555555555555554431 11144444555


Q ss_pred             EccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCcc
Q 043317          383 YVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRF  437 (700)
Q Consensus       383 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  437 (700)
                      ++++|++++. +. +..+++|++|++++|++++..+  +..+++|+.|++++|++
T Consensus       113 ~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  163 (308)
T 1h6u_A          113 DLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV  163 (308)
T ss_dssp             ECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence            5554444432 21 4444444444444444442221  33444444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.8e-21  Score=197.78  Aligned_cols=104  Identities=17%  Similarity=0.222  Sum_probs=54.1

Q ss_pred             CCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEE
Q 043317          328 NFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLD  407 (700)
Q Consensus       328 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  407 (700)
                      .+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ ...+++|++|++++|++++. + .+..+++|++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence            34455555555555542 23 34555555555555555555444 22455555555555555432 2 355555555555


Q ss_pred             CcCCcccccCChhhhccCCCCEEecCCCccC
Q 043317          408 LRGNNLEGQIPDQICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       408 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  438 (700)
                      +++|++++. + .+..+++|+.|++++|+++
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~  142 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQIT  142 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccC
Confidence            555555532 2 2555555555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.3e-20  Score=185.68  Aligned_cols=182  Identities=21%  Similarity=0.153  Sum_probs=147.4

Q ss_pred             CcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEc
Q 043317          258 ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLM  337 (700)
Q Consensus       258 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  337 (700)
                      ...++++++++.+.... ..+.  ++++.|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            34566777777665433 2222  57788888888888777777888888888888888888777777888888888888


Q ss_pred             ccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccccc
Q 043317          338 SNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQ  416 (700)
Q Consensus       338 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~  416 (700)
                      ++|.+++..+..+..+++|++|++++|.+++.++..+ .+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            8888887777778888888888888888888877776 788999999999999877777888899999999999999977


Q ss_pred             CChhhhccCCCCEEecCCCccCCCCC
Q 043317          417 IPDQICQLRRLGMMDLSHNRFNGSIP  442 (700)
Q Consensus       417 ~~~~~~~l~~L~~L~Ls~N~l~~~~p  442 (700)
                      .+..+..+++|+.|++++|++.+...
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            77788899999999999999986533

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=1.3e-20  Score=195.33  Aligned_cols=170  Identities=15%  Similarity=0.032  Sum_probs=91.9

Q ss_pred             cEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcc-hhhcCCCCCcE-EEcc
Q 043317          261 WFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP-HWMGNFSNLEI-LLMS  338 (700)
Q Consensus       261 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L~  338 (700)
                      ++++.++++++.. |..+  .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| .+|.+++++++ +.++
T Consensus        12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            4556666666543 2222  2456666666666665545556666666666666666654443 34556665544 4445


Q ss_pred             cCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccC-CcCccCcchhhhCC-CCccEEECcCCcccc
Q 043317          339 NNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQK-NALSGPIPDMLFRS-SKLMTLDLRGNNLEG  415 (700)
Q Consensus       339 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~-n~l~~~~~~~~~~~-~~L~~L~l~~N~l~~  415 (700)
                      +|++++..|..|..+++|++|++++|.++...+..+ ...++..+++.+ +++....+..|..+ ..++.|++++|+|+.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            566665555666666666666666666665555444 445555566544 34443333334433 245556666666553


Q ss_pred             cCChhhhccCCCCEEecCC
Q 043317          416 QIPDQICQLRRLGMMDLSH  434 (700)
Q Consensus       416 ~~~~~~~~l~~L~~L~Ls~  434 (700)
                       ++.......+|+.+++++
T Consensus       169 -i~~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          169 -IHNSAFNGTQLDELNLSD  186 (350)
T ss_dssp             -ECTTSSTTEEEEEEECTT
T ss_pred             -CChhhccccchhHHhhcc
Confidence             222222334555555553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=2.1e-20  Score=193.82  Aligned_cols=240  Identities=16%  Similarity=0.128  Sum_probs=180.6

Q ss_pred             cEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcE-EEc
Q 043317          187 HHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWF-LDL  265 (700)
Q Consensus       187 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~-L~L  265 (700)
                      ++++.++++++ ++|..+   .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.++...+.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46677777776 778765   3579999999999996666788999999999999999877777666677877765 566


Q ss_pred             CCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEccc-CcCCCCcchhhcCCC-CCcEEEcccCcCc
Q 043317          266 SDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISH-NFLSGHIPHWMGNFS-NLEILLMSNNCLE  343 (700)
Q Consensus       266 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~  343 (700)
                      +.|++....+..|..+++|++|++++|+++...+..+....++..+++.+ +++....+..|..+. .++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            77888888888888899999999999998877666666777788888865 466655555666654 5888999999988


Q ss_pred             ccchhhccCCCCCCEEEccC-ccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhh
Q 043317          344 GNIPVQLLNHRTLKLLSVSE-NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQI  421 (700)
Q Consensus       344 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~  421 (700)
                      . ++.......+|+.+++++ |.++.+++..| .+++|++|++++|+++...+..   +.+|+.|.+.++.--..+| .+
T Consensus       168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l  242 (350)
T 4ay9_X          168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL  242 (350)
T ss_dssp             E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred             C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence            4 555455566788888874 67777777776 7888999999999888443333   4566666665554333566 47


Q ss_pred             hccCCCCEEecCCC
Q 043317          422 CQLRRLGMMDLSHN  435 (700)
Q Consensus       422 ~~l~~L~~L~Ls~N  435 (700)
                      ..+++|+.++++++
T Consensus       243 ~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          243 EKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCSCCEEECSCH
T ss_pred             hhCcChhhCcCCCC
Confidence            78888888888754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=8.3e-20  Score=174.36  Aligned_cols=131  Identities=22%  Similarity=0.222  Sum_probs=59.4

Q ss_pred             CCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEcc
Q 043317          307 KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQ  385 (700)
Q Consensus       307 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~  385 (700)
                      +|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++.++..+ .+++|++|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            45555555555554444444445555555555555543333334444444444444444444433333 34444444444


Q ss_pred             CCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCcc
Q 043317          386 KNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRF  437 (700)
Q Consensus       386 ~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  437 (700)
                      +|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            4444433333344444444444444444433333344444444444444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=6.5e-20  Score=175.08  Aligned_cols=174  Identities=19%  Similarity=0.200  Sum_probs=132.7

Q ss_pred             CEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCc
Q 043317          357 KLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR  436 (700)
Q Consensus       357 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  436 (700)
                      +.++++++.++..+...  .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            45566666665554333  3577888888888876666667778888888888888886666667788888888888888


Q ss_pred             cCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccc
Q 043317          437 FNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNL  516 (700)
Q Consensus       437 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  516 (700)
                      +++..+..+..                                                                    +
T Consensus        88 l~~~~~~~~~~--------------------------------------------------------------------l   99 (208)
T 2o6s_A           88 LQSLPNGVFDK--------------------------------------------------------------------L   99 (208)
T ss_dssp             CCCCCTTTTTT--------------------------------------------------------------------C
T ss_pred             CCccCHhHhcC--------------------------------------------------------------------c
Confidence            87544433332                                                                    3


Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  596 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  596 (700)
                      ++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|++.+.       ++.|++|++
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~  172 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSE  172 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHH
T ss_pred             cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHH
Confidence            6778888888888877777788889999999999999877777788899999999999987754       456888999


Q ss_pred             cCCcCcccCCC
Q 043317          597 SYNNLSGLIPD  607 (700)
Q Consensus       597 s~N~l~~~~p~  607 (700)
                      +.|+++|.+|.
T Consensus       173 ~~n~~~g~ip~  183 (208)
T 2o6s_A          173 WINKHSGVVRN  183 (208)
T ss_dssp             HHHHCTTTBBC
T ss_pred             HHHhCCceeec
Confidence            99999998885

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=5.9e-20  Score=200.03  Aligned_cols=190  Identities=24%  Similarity=0.353  Sum_probs=139.6

Q ss_pred             CCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEcc
Q 043317          306 TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQ  385 (700)
Q Consensus       306 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~  385 (700)
                      .+++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|+.|++++|.+++++.  + ..+|++|+++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~--l-~~~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE--L-PASLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC--C-CTTCCEEECC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch--h-hcCCCEEECC
Confidence            388889999988886 55544  367888899888888 566   446788888888888887444  3 1288888888


Q ss_pred             CCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccC
Q 043317          386 KNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSI  465 (700)
Q Consensus       386 ~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  465 (700)
                      +|++++ +|.   .+++|++|++++|++++ +|.   .+++|+.|++++|++++ +|. +.                   
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------------------  179 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------------------  179 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-------------------
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-------------------
Confidence            888876 555   57788888888888885 554   56788888888888774 443 21                   


Q ss_pred             CCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCC--
Q 043317          466 FPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKI--  543 (700)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--  543 (700)
                                                                         ++|+.|+|++|.|+ .+|. +..  +|  
T Consensus       180 ---------------------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~  204 (571)
T 3cvr_A          180 ---------------------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHH  204 (571)
T ss_dssp             ---------------------------------------------------TTCCEEECCSSCCS-SCCC-CC-------
T ss_pred             ---------------------------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhc
Confidence                                                               45677888888888 5555 554  66  


Q ss_pred             -----cEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCC
Q 043317          544 -----RGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNF  590 (700)
Q Consensus       544 -----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  590 (700)
                           +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus       205 ~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          205 SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             ---CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             ccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence                 88888888888 57777777888888888888888888877766543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=1.6e-19  Score=173.52  Aligned_cols=156  Identities=19%  Similarity=0.217  Sum_probs=121.2

Q ss_pred             cEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCC-hhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccc
Q 043317          380 KHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIP-DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL  458 (700)
Q Consensus       380 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~  458 (700)
                      +++++++|.++ .+|..+.  ..+++|++++|++++..+ ..|..+++|+.|++++|++++..+..|.+           
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            46677777766 3554432  356777777777776644 45677888888888888877554444433           


Q ss_pred             cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCcccc
Q 043317          459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG  538 (700)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  538 (700)
                                                                               +++|+.|+|++|.+++..|..|+
T Consensus        80 ---------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~  102 (220)
T 2v70_A           80 ---------------------------------------------------------ASGVNEILLTSNRLENVQHKMFK  102 (220)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCSSCCCCCCGGGGT
T ss_pred             ---------------------------------------------------------CCCCCEEECCCCccCccCHhHhc
Confidence                                                                     36677888888888877777888


Q ss_pred             CcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317          539 DLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP  606 (700)
Q Consensus       539 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  606 (700)
                      .+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|++|++++|++++..+
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            89999999999999998888889999999999999999998889999999999999999999986654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.9e-19  Score=196.04  Aligned_cols=197  Identities=26%  Similarity=0.319  Sum_probs=158.2

Q ss_pred             CCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEc
Q 043317          282 TQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV  361 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  361 (700)
                      .+++.|++++|.+++ +|..+.  ++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|+.|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            379999999999986 565553  78999999999998 566   457899999999999986 666 654  8999999


Q ss_pred             cCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCC
Q 043317          362 SENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSI  441 (700)
Q Consensus       362 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  441 (700)
                      ++|.+++.+.   .+++|+.|++++|++++ +|.   .+++|++|++++|++++ +|. +.  ++|+.|++++|+++ .+
T Consensus       128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          128 DNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             CSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            9999998555   57899999999999986 565   57899999999999986 666 65  89999999999998 55


Q ss_pred             CchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccce
Q 043317          442 PSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG  521 (700)
Q Consensus       442 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~  521 (700)
                      |. +..  .+.                                                             .....|+.
T Consensus       196 p~-~~~--~L~-------------------------------------------------------------~~~~~L~~  211 (571)
T 3cvr_A          196 PA-VPV--RNH-------------------------------------------------------------HSEETEIF  211 (571)
T ss_dssp             CC-CC-----------------------------------------------------------------------CCEE
T ss_pred             hh-HHH--hhh-------------------------------------------------------------cccccceE
Confidence            54 322  000                                                             11245688


Q ss_pred             EECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccC
Q 043317          522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM  566 (700)
Q Consensus       522 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  566 (700)
                      |+|++|.|+ .+|..+..+++|+.|+|++|.+++.+|..+..++.
T Consensus       212 L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             EECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             EecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            999999999 67888888999999999999999999998888765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=2.5e-19  Score=172.26  Aligned_cols=154  Identities=21%  Similarity=0.261  Sum_probs=113.3

Q ss_pred             cEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhcccc
Q 043317          380 KHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLF  459 (700)
Q Consensus       380 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~  459 (700)
                      +.++++++.++ .+|..+.  +++++|++++|++++..+..|..+++|+.|++++|++++..|..|.+            
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            45666666665 3444332  56777777777777666666777777777777777776555554433            


Q ss_pred             CCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccC
Q 043317          460 GGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD  539 (700)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  539 (700)
                                                                              +++|+.|+|++|.+++..+..|..
T Consensus        79 --------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~  102 (220)
T 2v9t_B           79 --------------------------------------------------------LRSLNSLVLYGNKITELPKSLFEG  102 (220)
T ss_dssp             --------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTT
T ss_pred             --------------------------------------------------------CcCCCEEECCCCcCCccCHhHccC
Confidence                                                                    256677777777777666666788


Q ss_pred             cCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCccc
Q 043317          540 LQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL  604 (700)
Q Consensus       540 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  604 (700)
                      +++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.+.
T Consensus       103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            88888888888888888888888888888888888888888877888888888888888888753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=2.1e-19  Score=186.99  Aligned_cols=86  Identities=23%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCccc---ccccCCCEEeCCCCcCcccCcccccCCCC--C
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSF---SNLQMIESLDLSNNRLSGQIPAQLIELNF--L  591 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L  591 (700)
                      ++|+.|+|++|.+++..|..|..+++|+.|+|++|+|++..+..|   ..+++|+.|||++|++++..+..+..++.  +
T Consensus       112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l  191 (361)
T 2xot_A          112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK  191 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred             cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence            445555666666655555566666666666666666664333333   44666666666666666555555555554  3


Q ss_pred             CeEeccCCcCc
Q 043317          592 SNFNVSYNNLS  602 (700)
Q Consensus       592 ~~L~ls~N~l~  602 (700)
                      +.|++++|++.
T Consensus       192 ~~l~l~~N~~~  202 (361)
T 2xot_A          192 NGLYLHNNPLE  202 (361)
T ss_dssp             TTEECCSSCEE
T ss_pred             ceEEecCCCcc
Confidence            55666666665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=1.2e-18  Score=168.54  Aligned_cols=157  Identities=20%  Similarity=0.217  Sum_probs=127.6

Q ss_pred             CcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccc
Q 043317          379 LKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL  458 (700)
Q Consensus       379 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~  458 (700)
                      .+.++.++++++ .+|..+.  ++|++|++++|++++..|..+..+++|++|++++|++.+..+..|..           
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-----------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence            556777777776 4555443  78888888888888777888888888888888888886443333333           


Q ss_pred             cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCcccc
Q 043317          459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG  538 (700)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  538 (700)
                                                                               +++|+.|+|++|++++..+..|.
T Consensus        87 ---------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~  109 (229)
T 3e6j_A           87 ---------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFD  109 (229)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ---------------------------------------------------------CCCcCEEECCCCcCCccChhHhC
Confidence                                                                     36788889999999877777888


Q ss_pred             CcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCC
Q 043317          539 DLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD  607 (700)
Q Consensus       539 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  607 (700)
                      .+++|++|+|++|+++ .+|..+.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+.
T Consensus       110 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          110 RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            9999999999999999 7888899999999999999999988888899999999999999999876653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.6e-18  Score=174.39  Aligned_cols=81  Identities=25%  Similarity=0.320  Sum_probs=45.0

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  596 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  596 (700)
                      ++|+.|++++|.+++.  ..++.+++|++|++++|++++..|  +..+++|+.|++++|++++. | .+..+++|+.|++
T Consensus       134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l  207 (291)
T 1h6t_A          134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLEL  207 (291)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEE
T ss_pred             CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEEC
Confidence            4455555555555533  345555666666666666654433  55566666666666666543 2 2556666666666


Q ss_pred             cCCcCcc
Q 043317          597 SYNNLSG  603 (700)
Q Consensus       597 s~N~l~~  603 (700)
                      ++|+++.
T Consensus       208 ~~n~i~~  214 (291)
T 1h6t_A          208 FSQECLN  214 (291)
T ss_dssp             EEEEEEC
T ss_pred             cCCcccC
Confidence            6666553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.8e-18  Score=166.24  Aligned_cols=156  Identities=17%  Similarity=0.183  Sum_probs=126.3

Q ss_pred             CEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcc-hhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCC
Q 043317          357 KLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHN  435 (700)
Q Consensus       357 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  435 (700)
                      +.+++++|.++.++...  .+.+++|++++|++++..+ ..|..+++|++|++++|++++..+.+|..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            46677777766654433  3456788888888876544 45778888999999999988777778888999999999999


Q ss_pred             ccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCcc
Q 043317          436 RFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSN  515 (700)
Q Consensus       436 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  515 (700)
                      ++++..|..|.+                                                                    
T Consensus        92 ~l~~~~~~~~~~--------------------------------------------------------------------  103 (220)
T 2v70_A           92 RLENVQHKMFKG--------------------------------------------------------------------  103 (220)
T ss_dssp             CCCCCCGGGGTT--------------------------------------------------------------------
T ss_pred             ccCccCHhHhcC--------------------------------------------------------------------
Confidence            988665554543                                                                    


Q ss_pred             ccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317          516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP  582 (700)
Q Consensus       516 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  582 (700)
                      +++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus       104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            3678889999999998889999999999999999999998889999999999999999999987654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=3.6e-18  Score=164.13  Aligned_cols=154  Identities=22%  Similarity=0.258  Sum_probs=125.8

Q ss_pred             CEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCc
Q 043317          357 KLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR  436 (700)
Q Consensus       357 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  436 (700)
                      +.++++++.++.++...  .+++++|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++|+
T Consensus        14 ~~v~c~~~~l~~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            45666677666655433  2578888888888887666778888889999999999988888889999999999999998


Q ss_pred             cCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccc
Q 043317          437 FNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNL  516 (700)
Q Consensus       437 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  516 (700)
                      +++..+..|.+                                                                    +
T Consensus        92 l~~l~~~~f~~--------------------------------------------------------------------l  103 (220)
T 2v9t_B           92 ITELPKSLFEG--------------------------------------------------------------------L  103 (220)
T ss_dssp             CCCCCTTTTTT--------------------------------------------------------------------C
T ss_pred             CCccCHhHccC--------------------------------------------------------------------C
Confidence            87444333333                                                                    3


Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCccc
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ  580 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  580 (700)
                      ++|+.|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus       104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            6788899999999988899999999999999999999988888899999999999999998753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=2e-18  Score=190.22  Aligned_cols=146  Identities=20%  Similarity=0.227  Sum_probs=95.9

Q ss_pred             CcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccC
Q 043317          284 MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE  363 (700)
Q Consensus       284 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  363 (700)
                      +..+.+..+.+....+  +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            4445555555554332  45667788888888877743 3 47777888888888888775444  67777777777777


Q ss_pred             ccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCC
Q 043317          364 NYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGS  440 (700)
Q Consensus       364 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  440 (700)
                      |.+++.. ....+++|++|++++|++++.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.+.
T Consensus        97 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A           97 NKIKDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             SCCCCCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred             CCCCCCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence            7776543 222667777777777777642  3466667777777777777643  4566667777777777766543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=5.8e-18  Score=170.25  Aligned_cols=188  Identities=21%  Similarity=0.242  Sum_probs=99.2

Q ss_pred             CcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcc
Q 043317          211 LLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE  290 (700)
Q Consensus       211 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  290 (700)
                      +..+.+..+.+....  .+..+++|+.|++++|.+.+. +.  +..+++|++|++++|++.+..+  +..+++|+.|+++
T Consensus        26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-TT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-hh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence            333445555554322  234566777777777776543 22  3446666666666666655443  5566666666666


Q ss_pred             cCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccC
Q 043317          291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM  370 (700)
Q Consensus       291 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  370 (700)
                      +|++++.  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..
T Consensus        99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~  172 (291)
T 1h6t_A           99 ENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  172 (291)
T ss_dssp             SSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             CCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence            6666542  2255556666666666665542  2355555566666666555532  33445555555555555554443


Q ss_pred             CCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCccc
Q 043317          371 TSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLE  414 (700)
Q Consensus       371 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~  414 (700)
                      + ...+++|++|++++|++++ ++ .+..+++|+.|++++|+++
T Consensus       173 ~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          173 P-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             G-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             h-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence            3 2244455555555555443 22 2444444555555544444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=9.5e-18  Score=184.88  Aligned_cols=169  Identities=23%  Similarity=0.335  Sum_probs=141.0

Q ss_pred             CcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEc
Q 043317          258 ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLM  337 (700)
Q Consensus       258 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  337 (700)
                      ..+..+.+..+.+.+..+  +..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..|  +..+++|+.|+|
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L   94 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence            345566677777665443  35678899999999999854 3 58889999999999999997655  889999999999


Q ss_pred             ccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccC
Q 043317          338 SNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI  417 (700)
Q Consensus       338 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~  417 (700)
                      ++|.+.+ ++ .+..+++|+.|++++|.+++. +....+++|+.|+|++|++++.  ..+..+++|+.|+|++|++.+..
T Consensus        95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            9999985 33 688999999999999999875 3333899999999999999865  67889999999999999999766


Q ss_pred             ChhhhccCCCCEEecCCCccCC
Q 043317          418 PDQICQLRRLGMMDLSHNRFNG  439 (700)
Q Consensus       418 ~~~~~~l~~L~~L~Ls~N~l~~  439 (700)
                      |  +..+++|+.|+|++|++++
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCB
T ss_pred             h--hccCCCCCEEECcCCCCCC
Confidence            5  8899999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.75  E-value=9.6e-21  Score=207.57  Aligned_cols=77  Identities=23%  Similarity=0.214  Sum_probs=43.4

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCcccc-CcccccccCCCEEeCCCCcCcccCccc---ccCCCCCC
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSI-PRSFSNLQMIESLDLSNNRLSGQIPAQ---LIELNFLS  592 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~  592 (700)
                      ++|+.|+|++|.+++ +| .++.+++|++|+|++|+|++.+ |..|+++++|+.|+|++|++++.+|..   +..+++|+
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence            455556666666654 34 5566666666666666666554 566666666666666666666544421   22255555


Q ss_pred             eEe
Q 043317          593 NFN  595 (700)
Q Consensus       593 ~L~  595 (700)
                      .||
T Consensus       564 ~L~  566 (567)
T 1dce_A          564 SIL  566 (567)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.6e-17  Score=159.17  Aligned_cols=155  Identities=21%  Similarity=0.207  Sum_probs=129.2

Q ss_pred             CcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccC
Q 043317          284 MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE  363 (700)
Q Consensus       284 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  363 (700)
                      .+.++.+++.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            456777777776 4444433  7888888888888888788888888899999999888766666778888999999999


Q ss_pred             ccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCC
Q 043317          364 NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP  442 (700)
Q Consensus       364 n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  442 (700)
                      |.+++..+..+ .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99988888777 7899999999999998 778888999999999999999997777788999999999999999986543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.3e-17  Score=173.36  Aligned_cols=157  Identities=24%  Similarity=0.234  Sum_probs=103.2

Q ss_pred             CCcEEEcccCccccccccccc-CCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEc
Q 043317          283 QMEFLYLENNKFSGKIEEGLL-NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV  361 (700)
Q Consensus       283 ~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  361 (700)
                      .++.|++++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            355556666665555555554 5666666666666666555555666666666666666666555555666666666777


Q ss_pred             cCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhh---hCCCCccEEECcCCcccccCChhhhccCC--CCEEecCCC
Q 043317          362 SENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDML---FRSSKLMTLDLRGNNLEGQIPDQICQLRR--LGMMDLSHN  435 (700)
Q Consensus       362 ~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~L~Ls~N  435 (700)
                      ++|.+++..+..+ .+++|++|++++|++++..+..+   ..+++|+.|++++|++++..+..+..++.  ++.|++++|
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            7776666666655 66777777777777765444444   45788888888888888666667777776  478888888


Q ss_pred             ccCC
Q 043317          436 RFNG  439 (700)
Q Consensus       436 ~l~~  439 (700)
                      ++..
T Consensus       200 ~~~C  203 (361)
T 2xot_A          200 PLEC  203 (361)
T ss_dssp             CEEC
T ss_pred             CccC
Confidence            8864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=3.7e-18  Score=160.27  Aligned_cols=91  Identities=27%  Similarity=0.406  Sum_probs=75.9

Q ss_pred             ccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEe
Q 043317          516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN  595 (700)
Q Consensus       516 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  595 (700)
                      ++.|+.|+|++|.+++..|..|..+++|++|+|++|+|++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            36677788888888877788888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCCcCcccCC
Q 043317          596 VSYNNLSGLIP  606 (700)
Q Consensus       596 ls~N~l~~~~p  606 (700)
                      +++|++++..+
T Consensus       133 L~~N~l~c~c~  143 (192)
T 1w8a_A          133 LASNPFNCNCH  143 (192)
T ss_dssp             CTTCCBCCSGG
T ss_pred             eCCCCccCcCc
Confidence            88888887655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=3e-20  Score=203.58  Aligned_cols=203  Identities=20%  Similarity=0.169  Sum_probs=143.4

Q ss_pred             CCCCCcEEEcccCcccccccccccCCCCCcEEEcccCc-------------CCCCcchhhcCCCCCcEEE-cccCcCccc
Q 043317          280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNF-------------LSGHIPHWMGNFSNLEILL-MSNNCLEGN  345 (700)
Q Consensus       280 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~  345 (700)
                      .+++|+.|++++|+++ .+|..++.+++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+.  
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence            3455556666666655 445555666666666655443             2334444555555555555 4443322  


Q ss_pred             chhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccC
Q 043317          346 IPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR  425 (700)
Q Consensus       346 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~  425 (700)
                               .|+.+.+++|.++...+     ..|+.|++++|++++ +|. +..+++|+.|++++|+++ .+|..++.++
T Consensus       424 ---------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  486 (567)
T 1dce_A          424 ---------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR  486 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             ---------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence                     12223344455544332     358899999999985 666 888999999999999999 7888999999


Q ss_pred             CCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeec
Q 043317          426 RLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTK  505 (700)
Q Consensus       426 ~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  505 (700)
                      +|+.|++++|++++ +| .+..                                                          
T Consensus       487 ~L~~L~Ls~N~l~~-lp-~l~~----------------------------------------------------------  506 (567)
T 1dce_A          487 CLEVLQASDNALEN-VD-GVAN----------------------------------------------------------  506 (567)
T ss_dssp             TCCEEECCSSCCCC-CG-GGTT----------------------------------------------------------
T ss_pred             CCCEEECCCCCCCC-Cc-ccCC----------------------------------------------------------
Confidence            99999999999985 44 3333                                                          


Q ss_pred             cccccccCccccccceEECCCCcCcccC-CccccCcCCCcEEeCCCccCccccCc---ccccccCCCEEeC
Q 043317          506 NRYELYNGSNLNYMVGLDLSCNELTGNV-PSEIGDLQKIRGLNLSHNCLSGSIPR---SFSNLQMIESLDL  572 (700)
Q Consensus       506 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L  572 (700)
                                +++|+.|+|++|.+++.. |..++.+++|+.|+|++|.+++.+|.   .+..+++|+.||+
T Consensus       507 ----------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          507 ----------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             ----------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ----------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence                      478899999999999887 99999999999999999999976653   2445889999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=8.7e-18  Score=158.64  Aligned_cols=82  Identities=17%  Similarity=0.279  Sum_probs=56.0

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCcc-CccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEe
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNC-LSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN  595 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  595 (700)
                      ++|+.|++++|.+++..|..++.+++|++|++++|+ ++ .+| .++++++|+.|++++|++++. + .+..+++|++|+
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~  187 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLY  187 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEE
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEE
Confidence            556666666776666666667777777777777776 54 344 577777778888887777753 3 577777788888


Q ss_pred             ccCCcCc
Q 043317          596 VSYNNLS  602 (700)
Q Consensus       596 ls~N~l~  602 (700)
                      +++|++.
T Consensus       188 l~~N~i~  194 (197)
T 4ezg_A          188 AFSQTIG  194 (197)
T ss_dssp             ECBC---
T ss_pred             eeCcccC
Confidence            8887765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=2.2e-17  Score=163.21  Aligned_cols=82  Identities=21%  Similarity=0.240  Sum_probs=55.3

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  596 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  596 (700)
                      +.|+.|++++|++++. + .++.+++|++|++++|++++. + .++.+++|+.|++++|++++.  ..+..+++|+.|++
T Consensus       106 ~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l  179 (263)
T 1xeu_A          106 ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL  179 (263)
T ss_dssp             SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEE
T ss_pred             CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeC
Confidence            3456666777766643 2 466777777777777777753 3 567777777777777777765  55677777777777


Q ss_pred             cCCcCccc
Q 043317          597 SYNNLSGL  604 (700)
Q Consensus       597 s~N~l~~~  604 (700)
                      ++|++++.
T Consensus       180 ~~N~~~~~  187 (263)
T 1xeu_A          180 TGQKCVNE  187 (263)
T ss_dssp             EEEEEECC
T ss_pred             CCCcccCC
Confidence            77777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=3.3e-17  Score=153.76  Aligned_cols=132  Identities=24%  Similarity=0.318  Sum_probs=102.7

Q ss_pred             cEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCCh-hhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccc
Q 043317          380 KHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPD-QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL  458 (700)
Q Consensus       380 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~  458 (700)
                      +++++++|+++ .+|..+.  .++++|++++|++++..+. .+..+++|++|++++|++++..|..|.+           
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------   76 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence            56777777775 4555443  3778888888888765554 4778888888888888887666665544           


Q ss_pred             cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCcccc
Q 043317          459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG  538 (700)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  538 (700)
                                                                               +++|+.|+|++|++++..|..|.
T Consensus        77 ---------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~   99 (192)
T 1w8a_A           77 ---------------------------------------------------------ASHIQELQLGENKIKEISNKMFL   99 (192)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCSCCCCEECSSSST
T ss_pred             ---------------------------------------------------------cccCCEEECCCCcCCccCHHHhc
Confidence                                                                     36677888888888888888888


Q ss_pred             CcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317          539 DLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP  582 (700)
Q Consensus       539 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  582 (700)
                      .+++|++|+|++|++++.+|..|+.+++|+.|+|++|++++..+
T Consensus       100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            89999999999999998888899999999999999999987655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=4.4e-18  Score=192.46  Aligned_cols=161  Identities=20%  Similarity=0.155  Sum_probs=87.4

Q ss_pred             CCCcEEEcccCcccccccccccCCCCC-----cEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCC
Q 043317          282 TQMEFLYLENNKFSGKIEEGLLNSTKL-----YQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTL  356 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~~~~~~~~~~~~L-----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  356 (700)
                      +.++.|++.+|.+... +..+.....|     ..++++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            5577888888887753 3322222222     22223333333 44666777788888888888877 566666677888


Q ss_pred             CEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCC
Q 043317          357 KLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHN  435 (700)
Q Consensus       357 ~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  435 (700)
                      ++|+|++|.++.+ |..+ .+++|++|+|++|+++ .+|..+..+++|++|+|++|.|+ .+|..|..+++|+.|+|++|
T Consensus       250 ~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          250 TRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             CEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            8888888887743 3434 7778888888888877 66777777788888888888776 56767777888888888888


Q ss_pred             ccCCCCCchhhhh
Q 043317          436 RFNGSIPSCFTNM  448 (700)
Q Consensus       436 ~l~~~~p~~~~~l  448 (700)
                      ++++.+|..+..+
T Consensus       327 ~l~~~~p~~~~~~  339 (727)
T 4b8c_D          327 PLEKQFLKILTEK  339 (727)
T ss_dssp             CCCSHHHHHHHHH
T ss_pred             ccCCCChHHHhhc
Confidence            8877766666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=5.6e-18  Score=173.92  Aligned_cols=77  Identities=9%  Similarity=0.051  Sum_probs=55.3

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCc-EEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEe
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIR-GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN  595 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  595 (700)
                      ++|+.|++++| ++...+.+|.++.+|+ .+++.+ +++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++
T Consensus       250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            45666666666 6656666777777777 777777 66656667777777777777777777777777777777777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=2e-17  Score=169.81  Aligned_cols=54  Identities=11%  Similarity=0.013  Sum_probs=28.1

Q ss_pred             cccc-eEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEe
Q 043317          517 NYMV-GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLD  571 (700)
Q Consensus       517 ~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  571 (700)
                      ++|+ .+++.+ .++...+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus       273 ~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          273 GRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             hhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            3444 455554 44444455555555555555555555544445555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.2e-16  Score=150.74  Aligned_cols=148  Identities=16%  Similarity=0.229  Sum_probs=73.1

Q ss_pred             CCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEcc
Q 043317          283 QMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVS  362 (700)
Q Consensus       283 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  362 (700)
                      +|+.|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            3444444444443 222 24444444444444443331  1234444555555555555544444445555555555555


Q ss_pred             CccCcccCCCcc-CCCCCcEEEccCCc-CccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccC
Q 043317          363 ENYLSGSMTSSF-NLSSLKHLYVQKNA-LSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       363 ~n~l~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  438 (700)
                      +|.+++..+..+ .+++|++|++++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            555544333333 45555555555555 33 333 45566666666666666663 22 5566666777777666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2.8e-17  Score=162.49  Aligned_cols=150  Identities=26%  Similarity=0.358  Sum_probs=84.6

Q ss_pred             CCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCE
Q 043317          279 LNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKL  358 (700)
Q Consensus       279 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  358 (700)
                      ..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|++++ ++. +.. ++|+.
T Consensus        38 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~  110 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSR  110 (263)
T ss_dssp             HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCE
T ss_pred             hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccE
Confidence            344455555555555542 22 34555555556665555554333  5555566666666665553 222 122 56666


Q ss_pred             EEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccC
Q 043317          359 LSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       359 L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  438 (700)
                      |++++|.+++.. ....+++|++|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|++.
T Consensus       111 L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          111 LFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             EECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             EEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            666666665542 222566666666666666643 2 466666777777777776644  45666777777777777766


Q ss_pred             CC
Q 043317          439 GS  440 (700)
Q Consensus       439 ~~  440 (700)
                      +.
T Consensus       186 ~~  187 (263)
T 1xeu_A          186 NE  187 (263)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=1.6e-17  Score=187.82  Aligned_cols=183  Identities=19%  Similarity=0.162  Sum_probs=114.1

Q ss_pred             CcCcEEEcCCcccccccccccCCCCC-----CcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCC
Q 043317          258 ISLWFLDLSDNNFYGQFFSKDLNLTQ-----MEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNL  332 (700)
Q Consensus       258 ~~L~~L~L~~n~l~~~~~~~~~~l~~-----L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  332 (700)
                      +.++.|++.+|.+...... +.....     +..+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~-~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQA-LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcchhh-HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            5678888888887663222 211111     222333334443 45677888899999999999988 566666789999


Q ss_pred             cEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCC
Q 043317          333 EILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGN  411 (700)
Q Consensus       333 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N  411 (700)
                      ++|+|++|.++ .+|..+..+++|++|+|++|.++.+ |..+ .+++|++|+|++|.++ .+|..|..+++|++|+|++|
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence            99999999998 7888899999999999999999855 4444 8899999999999987 67888999999999999999


Q ss_pred             cccccCChhhhccCC-CCEEecCCCccCCCCCchhh
Q 043317          412 NLEGQIPDQICQLRR-LGMMDLSHNRFNGSIPSCFT  446 (700)
Q Consensus       412 ~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~  446 (700)
                      ++++.+|..+..+.. +..+++++|.+++.+|..+.
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~  362 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR  362 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence            999888887765432 23478888888877776543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=8.6e-16  Score=143.98  Aligned_cols=88  Identities=25%  Similarity=0.281  Sum_probs=76.7

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  596 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  596 (700)
                      ++|+.|+|++|.+++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++
T Consensus        54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (193)
T 2wfh_A           54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI  133 (193)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence            56777888888888777788889999999999999999888888999999999999999999877778889999999999


Q ss_pred             cCCcCccc
Q 043317          597 SYNNLSGL  604 (700)
Q Consensus       597 s~N~l~~~  604 (700)
                      ++|++.+.
T Consensus       134 ~~N~~~C~  141 (193)
T 2wfh_A          134 GANPLYCD  141 (193)
T ss_dssp             CSSCEECS
T ss_pred             CCCCeecC
Confidence            99999853

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=4.4e-16  Score=142.87  Aligned_cols=134  Identities=21%  Similarity=0.207  Sum_probs=98.2

Q ss_pred             CCCccEEECcCCccc-ccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccc
Q 043317          400 SSKLMTLDLRGNNLE-GQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYY  478 (700)
Q Consensus       400 ~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (700)
                      .++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+                                 
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~---------------------------------   67 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL---------------------------------   67 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC---------------------------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh---------------------------------
Confidence            356777777777776 56666677777777777777777643  111                                 


Q ss_pred             ccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCcccc-
Q 043317          479 NSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSI-  557 (700)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-  557 (700)
                                                         ..+++|+.|++++|.+++.+|..+..+++|++|++++|++++.. 
T Consensus        68 -----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  112 (168)
T 2ell_A           68 -----------------------------------PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST  112 (168)
T ss_dssp             -----------------------------------CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGG
T ss_pred             -----------------------------------ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchh
Confidence                                               12366777888888887667777777888888888888887543 


Q ss_pred             CcccccccCCCEEeCCCCcCcccCc---ccccCCCCCCeEeccCCcCcc
Q 043317          558 PRSFSNLQMIESLDLSNNRLSGQIP---AQLIELNFLSNFNVSYNNLSG  603 (700)
Q Consensus       558 p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~~  603 (700)
                      +..+..+++|+.|++++|++++..+   ..+..+++|++|++++|.+..
T Consensus       113 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            2678888888888888888886655   477888888888888888763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=5.7e-16  Score=142.11  Aligned_cols=137  Identities=20%  Similarity=0.231  Sum_probs=94.2

Q ss_pred             CCCCcEEEccCCcCc-cCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhh
Q 043317          376 LSSLKHLYVQKNALS-GPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIE  454 (700)
Q Consensus       376 l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~  454 (700)
                      .++|++|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..       
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------   93 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------   93 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence            355666666666665 45566666667777777777776644  56667777777777777776555544332       


Q ss_pred             hccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccC-
Q 043317          455 NVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNV-  533 (700)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-  533 (700)
                                                                                   +++|+.|++++|.+++.. 
T Consensus        94 -------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~  112 (168)
T 2ell_A           94 -------------------------------------------------------------LPNLTHLNLSGNKLKDIST  112 (168)
T ss_dssp             -------------------------------------------------------------CTTCCEEECBSSSCCSSGG
T ss_pred             -------------------------------------------------------------CCCCCEEeccCCccCcchh
Confidence                                                                         256677777777777532 


Q ss_pred             CccccCcCCCcEEeCCCccCccccC---cccccccCCCEEeCCCCcCcccCcc
Q 043317          534 PSEIGDLQKIRGLNLSHNCLSGSIP---RSFSNLQMIESLDLSNNRLSGQIPA  583 (700)
Q Consensus       534 p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~  583 (700)
                      +..+..+++|++|++++|.+++..+   ..+..+++|+.||+++|.+.. +|.
T Consensus       113 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~  164 (168)
T 2ell_A          113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APD  164 (168)
T ss_dssp             GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCS
T ss_pred             HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-ccc
Confidence            2677788888888888888886555   478888888888888888873 343

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=1.6e-15  Score=140.30  Aligned_cols=91  Identities=22%  Similarity=0.211  Sum_probs=73.5

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  596 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  596 (700)
                      ++|+.|++++|.+++..+..++.+++|++|++++|++++..+..|+++++|+.|++++|++++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence            56677777777777666666788888888888888888777777888888888888888888777767788888888899


Q ss_pred             cCCcCcccCCC
Q 043317          597 SYNNLSGLIPD  607 (700)
Q Consensus       597 s~N~l~~~~p~  607 (700)
                      ++|++++.+|.
T Consensus       132 ~~N~~~~~~~~  142 (177)
T 2o6r_A          132 HTNPWDCSCPR  142 (177)
T ss_dssp             CSSCBCCCHHH
T ss_pred             cCCCeeccCcc
Confidence            88888876663

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.63  E-value=1e-14  Score=153.55  Aligned_cols=327  Identities=12%  Similarity=0.068  Sum_probs=186.9

Q ss_pred             ccccCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCC
Q 043317           32 NCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPT  111 (700)
Q Consensus        32 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  111 (700)
                      .+|.++++|+.+.+.. .++.+...+|.+|++|+.+++..+ ++ .++..+|.++++|+.+.+..+  ...+...+|.++
T Consensus        65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~  139 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGC  139 (394)
T ss_dssp             TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTC
T ss_pred             HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc--eeeecceeeecc
Confidence            4566666666666653 355455566777777777776544 33 344456666666666555432  234444455555


Q ss_pred             CcccEEEeeCCCCCCcC-hhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEe
Q 043317          112 FQLKVLELANCSLNVVP-TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLD  190 (700)
Q Consensus       112 ~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  190 (700)
                      ..++.....  ....+. ..+..+.+|+.+.+..+- . .++...|.++.+|+.+.+..+ ++......+..+..|+.+.
T Consensus       140 ~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          140 DFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             CCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             cccccccCc--cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence            333222211  112222 334566667777665442 2 455555666667776666554 3434455566666666666


Q ss_pred             CCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccc
Q 043317          191 ASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF  270 (700)
Q Consensus       191 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l  270 (700)
                      +..+..  .+....+. ..+|+.+.+... ++......+.++..++.+.+..+...  +....+..+..++.+....+.+
T Consensus       215 ~~~~~~--~i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i  288 (394)
T 4fs7_A          215 FPNSLY--YLGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIV  288 (394)
T ss_dssp             CCTTCC--EECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEE
T ss_pred             cCCCce--Eeehhhcc-cCCCceEEECCC-ceecccccccccccceeEEcCCCcce--eeccccccccccceeccCceee
Confidence            655432  22222333 356777766543 33344455666777777777655331  2223345567777776665543


Q ss_pred             ccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhc
Q 043317          271 YGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL  350 (700)
Q Consensus       271 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  350 (700)
                         ....+..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++.....+|
T Consensus       289 ---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF  362 (394)
T 4fs7_A          289 ---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF  362 (394)
T ss_dssp             ---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred             ---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence               2345566777777777654 55455666777778888877644 55455667777888888887765 555556677


Q ss_pred             cCCCCCCEEEccCccCcccCCCcc-CCCCCcEE
Q 043317          351 LNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHL  382 (700)
Q Consensus       351 ~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L  382 (700)
                      .+|.+|+.+++..+ ++.. ...| ++++|+.+
T Consensus       363 ~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          363 QGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred             hCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence            78888888887654 2222 2334 66666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=9.7e-15  Score=152.85  Aligned_cols=248  Identities=13%  Similarity=0.140  Sum_probs=151.7

Q ss_pred             hhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcC-hhhcCCCCCCEEEccCCCCCccCchHHhhcC
Q 043317           81 SSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP-TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNN  159 (700)
Q Consensus        81 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l  159 (700)
                      .+|.++ +|+.+++..+  ...+...+|.++ +|+.+.+.. .+..++ ..+..|.+|+.++++.|+++ .++...|. +
T Consensus       130 ~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~  202 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-Y  202 (401)
T ss_dssp             TTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-T
T ss_pred             hhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-e
Confidence            344443 3444444322  333444444442 344444443 333333 22334445555555555544 44444442 3


Q ss_pred             CCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEE
Q 043317          160 TKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILH  239 (700)
Q Consensus       160 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  239 (700)
                      .+|+.+.+..+ ++.....+|..+.+|+.+++..+ +. .++...|.. .+|+.+.+. +.++.....+|.++++|+.++
T Consensus       203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEE
T ss_pred             cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEE
Confidence            45555555422 44344445555555555555543 22 455555553 577777774 345555667778888888888


Q ss_pred             ccCccCC----CCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEccc
Q 043317          240 LSKNNFS----EDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISH  315 (700)
Q Consensus       240 L~~n~l~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~  315 (700)
                      +.+|.+.    ..++...+.+|++|+.+++. +.+......+|.++++|+.+.+..+ ++.....+|.++ +|+.+++++
T Consensus       278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             EESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred             eCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence            8777654    12445556778889999888 4577777788888999999999655 666777788888 999999999


Q ss_pred             CcCCCCcchhhcCCC-CCcEEEcccCcCc
Q 043317          316 NFLSGHIPHWMGNFS-NLEILLMSNNCLE  343 (700)
Q Consensus       316 n~l~~~~~~~~~~l~-~L~~L~L~~n~l~  343 (700)
                      |.+....+..|.+++ +++.|.+..+.+.
T Consensus       355 n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          355 TTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CCCcccccccccCCCCCccEEEeCHHHHH
Confidence            988766677788774 7889998877654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=1.7e-14  Score=150.95  Aligned_cols=248  Identities=13%  Similarity=0.122  Sum_probs=142.6

Q ss_pred             ccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCC
Q 043317          275 FSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHR  354 (700)
Q Consensus       275 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  354 (700)
                      ..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .++...+.+|.+|++|+.+++.+|.++......|. +.
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~  203 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA  203 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred             HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence            3344443 4555555443 443444444442 466666554 34434445566666666666666666533333333 45


Q ss_pred             CCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecC
Q 043317          355 TLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLS  433 (700)
Q Consensus       355 ~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls  433 (700)
                      +|+.+.+..+ ++.+....| ++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+.++.....+|.+|++|+.+++.
T Consensus       204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~  279 (401)
T 4fdw_A          204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTY  279 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEE
T ss_pred             ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeC
Confidence            6666666533 555555555 5666666666654 33333444444 56777777 344554556667777777777776


Q ss_pred             CCccCC-----CCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeecccc
Q 043317          434 HNRFNG-----SIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRY  508 (700)
Q Consensus       434 ~N~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  508 (700)
                      +|.+..     ..+.+|                                                               
T Consensus       280 ~~~~~~~~~~~I~~~aF---------------------------------------------------------------  296 (401)
T 4fdw_A          280 GSTFNDDPEAMIHPYCL---------------------------------------------------------------  296 (401)
T ss_dssp             SSCCCCCTTCEECTTTT---------------------------------------------------------------
T ss_pred             CccccCCcccEECHHHh---------------------------------------------------------------
Confidence            665431     011111                                                               


Q ss_pred             ccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCC
Q 043317          509 ELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIEL  588 (700)
Q Consensus       509 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  588 (700)
                           ..+++|+.+++. +.++.....+|.++.+|+.++|..| ++...+.+|.++ +|+.+++++|.+....+..|.++
T Consensus       297 -----~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~  368 (401)
T 4fdw_A          297 -----EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF  368 (401)
T ss_dssp             -----TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred             -----hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence                 224566667776 3466566677777777777777544 665666777777 78888887777776666677766


Q ss_pred             C-CCCeEeccCCcCc
Q 043317          589 N-FLSNFNVSYNNLS  602 (700)
Q Consensus       589 ~-~L~~L~ls~N~l~  602 (700)
                      + .++.+.+..+.+.
T Consensus       369 ~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          369 PDDITVIRVPAESVE  383 (401)
T ss_dssp             CTTCCEEEECGGGHH
T ss_pred             CCCccEEEeCHHHHH
Confidence            4 5667766665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=6.4e-16  Score=138.60  Aligned_cols=81  Identities=23%  Similarity=0.237  Sum_probs=55.0

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccc-cCcccccccCCCEEeCCCCcCcccCc---ccccCCCCCC
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGS-IPRSFSNLQMIESLDLSNNRLSGQIP---AQLIELNFLS  592 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~  592 (700)
                      +.|+.|++++|.+++.+|..++.+++|++|++++|++++. .+..++++++|+.|++++|++++..+   ..+..+++|+
T Consensus        64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            5566666666666655666666677777777777777653 33667777777777777777776655   4667777777


Q ss_pred             eEecc
Q 043317          593 NFNVS  597 (700)
Q Consensus       593 ~L~ls  597 (700)
                      +||++
T Consensus       144 ~L~l~  148 (149)
T 2je0_A          144 YLDGY  148 (149)
T ss_dssp             EETTB
T ss_pred             cccCC
Confidence            77765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=6e-15  Score=138.23  Aligned_cols=129  Identities=25%  Similarity=0.379  Sum_probs=103.2

Q ss_pred             cEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhcccc
Q 043317          380 KHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLF  459 (700)
Q Consensus       380 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~  459 (700)
                      +.+++++|+++ .+|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|.+            
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------   76 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------   76 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence            46777777776 4555432  57888888888887 56778888888888888888887655555543            


Q ss_pred             CCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccC
Q 043317          460 GGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD  539 (700)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  539 (700)
                                                                              ++.|+.|+|++|.+++..|..|..
T Consensus        77 --------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~~f~~  100 (193)
T 2wfh_A           77 --------------------------------------------------------MTQLLTLILSYNRLRCIPPRTFDG  100 (193)
T ss_dssp             --------------------------------------------------------CTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             --------------------------------------------------------CCCCCEEECCCCccCEeCHHHhCC
Confidence                                                                    367888889999998888888999


Q ss_pred             cCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCccc
Q 043317          540 LQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ  580 (700)
Q Consensus       540 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  580 (700)
                      +++|+.|+|++|+|++..+..|..+++|+.|+|++|++...
T Consensus       101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          101 LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            99999999999999977777899999999999999998753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=9e-15  Score=135.30  Aligned_cols=133  Identities=21%  Similarity=0.267  Sum_probs=102.4

Q ss_pred             CcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccc
Q 043317          379 LKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDL  458 (700)
Q Consensus       379 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~  458 (700)
                      .+.+++++|+++ .+|..+  .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..           
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------   74 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-----------   74 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence            456777777776 344333  357888888888887666666778888888888888887544433332           


Q ss_pred             cCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCcccc
Q 043317          459 FGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIG  538 (700)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  538 (700)
                                                                               +++|+.|++++|.+++..+..+.
T Consensus        75 ---------------------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~   97 (177)
T 2o6r_A           75 ---------------------------------------------------------LTKLTILYLHENKLQSLPNGVFD   97 (177)
T ss_dssp             ---------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ---------------------------------------------------------CCccCEEECCCCCccccCHHHhh
Confidence                                                                     36778888888888877777788


Q ss_pred             CcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317          539 DLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP  582 (700)
Q Consensus       539 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  582 (700)
                      .+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus        98 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999999999999997777778899999999999999987765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.59  E-value=4.2e-14  Score=148.86  Aligned_cols=335  Identities=12%  Similarity=0.080  Sum_probs=239.0

Q ss_pred             cCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcC
Q 043317           49 QLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVP  128 (700)
Q Consensus        49 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p  128 (700)
                      .++.+...+|.+|++|+.+.+..+ ++ .++..+|.++++|+.+++..+  ...+...+|.++.+|+.+.+..+ +..+.
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~  132 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIG  132 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeec
Confidence            355566778999999999999754 65 566678999999999999743  55677778999999988777644 44444


Q ss_pred             hhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhc
Q 043317          129 TFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTIL  208 (700)
Q Consensus       129 ~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l  208 (700)
                      ...+....+....+... .. .+....|.++++|+.+.+.++. .......+..+.+|+.+++..+ +. .++...+..+
T Consensus       133 ~~aF~~~~~~~~~~~~~-~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~  207 (394)
T 4fs7_A          133 VEAFKGCDFKEITIPEG-VT-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC  207 (394)
T ss_dssp             TTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC
T ss_pred             ceeeecccccccccCcc-cc-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccc
Confidence            43333233444433322 22 4555667789999999997653 3455667888899999998776 33 5666666667


Q ss_pred             cCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEE
Q 043317          209 KKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLY  288 (700)
Q Consensus       209 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  288 (700)
                      ..|+.+.+..+...  +........+|+.+.+... ++. +....+.++..++.+.+..+.. ......+..+..++.+.
T Consensus       208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~-i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~  282 (394)
T 4fs7_A          208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTE-LGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVI  282 (394)
T ss_dssp             TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCE-ECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEE
T ss_pred             cccceeecCCCceE--eehhhcccCCCceEEECCC-cee-cccccccccccceeEEcCCCcc-eeeccccccccccceec
Confidence            88888887765432  2334445678888888653 222 2333446788999999887643 45556778888888888


Q ss_pred             cccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcc
Q 043317          289 LENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG  368 (700)
Q Consensus       289 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  368 (700)
                      ...+.+   ....+..+.+|+.+.+..+ ++.....+|.++.+|+.+++.++ ++..-..+|.+|.+|+.+++..+ ++.
T Consensus       283 ~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~  356 (394)
T 4fs7_A          283 YGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK  356 (394)
T ss_dssp             ECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred             cCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence            776543   3456778899999999765 55456678999999999999754 66566778999999999999876 777


Q ss_pred             cCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEE
Q 043317          369 SMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTL  406 (700)
Q Consensus       369 ~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  406 (700)
                      +....| +|++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus       357 I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          357 IGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             ECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             ehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            777788 8899999999765 32 345678888888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=3.2e-15  Score=134.05  Aligned_cols=126  Identities=22%  Similarity=0.246  Sum_probs=69.9

Q ss_pred             CCCcEEEcccCcCC-CCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEE
Q 043317          306 TKLYQLDISHNFLS-GHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLY  383 (700)
Q Consensus       306 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~  383 (700)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+ .+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34445555555444 34444444455555555555555433  344455555555555555554433333 356666666


Q ss_pred             ccCCcCccC-cchhhhCCCCccEEECcCCcccccCC---hhhhccCCCCEEecC
Q 043317          384 VQKNALSGP-IPDMLFRSSKLMTLDLRGNNLEGQIP---DQICQLRRLGMMDLS  433 (700)
Q Consensus       384 l~~n~l~~~-~~~~~~~~~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls  433 (700)
                      +++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.||++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            666666542 23566667777777777777765544   456677777777765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=1.8e-14  Score=133.10  Aligned_cols=86  Identities=14%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             ccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCc--ccccccCCCEEeCCCCcCcccCcc----cccCCC
Q 043317          516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPR--SFSNLQMIESLDLSNNRLSGQIPA----QLIELN  589 (700)
Q Consensus       516 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~  589 (700)
                      ++.|+.|++++|.+++..+..++.+++|++|++++|+++ .+|.  .++.+++|+.|++++|+++. +|.    .+..++
T Consensus        63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~  140 (176)
T 1a9n_A           63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVP  140 (176)
T ss_dssp             CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCT
T ss_pred             CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCC
Confidence            356677777777777655555577788888888888886 4554  67788888888888888874 454    377788


Q ss_pred             CCCeEeccCCcCcc
Q 043317          590 FLSNFNVSYNNLSG  603 (700)
Q Consensus       590 ~L~~L~ls~N~l~~  603 (700)
                      +|++||+++|....
T Consensus       141 ~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          141 QVRVLDFQKVKLKE  154 (176)
T ss_dssp             TCSEETTEECCHHH
T ss_pred             ccceeCCCcCCHHH
Confidence            88888888887653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=3.8e-16  Score=147.42  Aligned_cols=134  Identities=21%  Similarity=0.241  Sum_probs=92.5

Q ss_pred             chhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccc
Q 043317          394 PDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCY  473 (700)
Q Consensus       394 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  473 (700)
                      |..+..+++|++|++++|++++ +| .+..+++|+.|++++|+++ .+|..+..                          
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~--------------------------   91 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV--------------------------   91 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH--------------------------
T ss_pred             hHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc--------------------------
Confidence            3477777788888888887775 55 7777778888888887776 44443332                          


Q ss_pred             cccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccC
Q 043317          474 IGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL  553 (700)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  553 (700)
                                                                +++|+.|++++|.+++ +| .++.+++|++|++++|++
T Consensus        92 ------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i  127 (198)
T 1ds9_A           92 ------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             ------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEEC
T ss_pred             ------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcC
Confidence                                                      2556777777777775 33 577777788888888877


Q ss_pred             ccccC-cccccccCCCEEeCCCCcCcccCccc----------ccCCCCCCeEeccCCcCc
Q 043317          554 SGSIP-RSFSNLQMIESLDLSNNRLSGQIPAQ----------LIELNFLSNFNVSYNNLS  602 (700)
Q Consensus       554 ~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~  602 (700)
                      ++..+ ..+..+++|+.|++++|++++.+|..          +..+++|++||  +|+++
T Consensus       128 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            74332 46777778888888888877666543          66777777776  55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=5.5e-14  Score=129.76  Aligned_cols=132  Identities=18%  Similarity=0.188  Sum_probs=100.8

Q ss_pred             ccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCc
Q 043317          302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLK  380 (700)
Q Consensus       302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~  380 (700)
                      +..+.+|++|++++|.++. +|......++|++|++++|.+++.  ..+..+++|++|++++|.+++.++..+ .+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            4556777777777777773 344333334788888888887754  567778888888888888887776665 788899


Q ss_pred             EEEccCCcCccCcch--hhhCCCCccEEECcCCcccccCCh----hhhccCCCCEEecCCCccC
Q 043317          381 HLYVQKNALSGPIPD--MLFRSSKLMTLDLRGNNLEGQIPD----QICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       381 ~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~  438 (700)
                      +|++++|+++ .+|.  .+..+++|++|++++|+++ .+|.    .+..+++|+.||+++|...
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999999886 4565  7888899999999999998 4555    4888999999999998764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=1.8e-13  Score=125.31  Aligned_cols=110  Identities=18%  Similarity=0.115  Sum_probs=93.2

Q ss_pred             EeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccC
Q 043317          502 FVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQI  581 (700)
Q Consensus       502 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  581 (700)
                      .+..+....++....+.++.|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|+.|+|++|++++..
T Consensus        15 ~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~   94 (170)
T 3g39_A           15 DCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP   94 (170)
T ss_dssp             ECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             EeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC
Confidence            33444444444445688999999999999988999999999999999999999888888999999999999999999888


Q ss_pred             cccccCCCCCCeEeccCCcCcccCCCCCCC
Q 043317          582 PAQLIELNFLSNFNVSYNNLSGLIPDKGQY  611 (700)
Q Consensus       582 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  611 (700)
                      +..|..+++|++|++++|++++..+...++
T Consensus        95 ~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l  124 (170)
T 3g39_A           95 RGAFDNLKSLTHIWLLNNPWDCACSDILYL  124 (170)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCTTBGGGHHH
T ss_pred             HHHhcCCCCCCEEEeCCCCCCCCchhHHHH
Confidence            888999999999999999999776643333

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=1.2e-15  Score=143.98  Aligned_cols=132  Identities=25%  Similarity=0.237  Sum_probs=87.0

Q ss_pred             cccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCc
Q 043317          301 GLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLK  380 (700)
Q Consensus       301 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~  380 (700)
                      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++.. ....+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence            56666666666666666664 44 5666666777777766666 45555555566777777777766643 222567777


Q ss_pred             EEEccCCcCccCcc-hhhhCCCCccEEECcCCcccccCCh----------hhhccCCCCEEecCCCccC
Q 043317          381 HLYVQKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPD----------QICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       381 ~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~----------~~~~l~~L~~L~Ls~N~l~  438 (700)
                      +|++++|++++..+ ..+..+++|++|++++|++.+..|.          .+..+++|+.||  +|.++
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            77777777764222 3667778888888888887765543          377888888887  66665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=3.7e-13  Score=123.57  Aligned_cols=108  Identities=19%  Similarity=0.151  Sum_probs=91.5

Q ss_pred             EEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCccc
Q 043317          501 EFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQ  580 (700)
Q Consensus       501 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  580 (700)
                      ..+..+....++....+.|+.|+|++|++++..|..|+.+++|++|+|++|+|++..+..|+++++|+.|+|++|+|++.
T Consensus        17 l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l   96 (174)
T 2r9u_A           17 VNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI   96 (174)
T ss_dssp             EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence            34444555555555568899999999999998899999999999999999999987777789999999999999999987


Q ss_pred             CcccccCCCCCCeEeccCCcCcccCCCC
Q 043317          581 IPAQLIELNFLSNFNVSYNNLSGLIPDK  608 (700)
Q Consensus       581 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~  608 (700)
                      .+..|..+++|++|++++|++.+..+..
T Consensus        97 ~~~~~~~l~~L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A           97 PRGAFDNLKSLTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             CTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred             CHHHhccccCCCEEEeCCCCcccccccH
Confidence            7777999999999999999998665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.43  E-value=1.3e-11  Score=129.82  Aligned_cols=107  Identities=13%  Similarity=0.111  Sum_probs=45.5

Q ss_pred             cccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCC
Q 043317          276 SKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRT  355 (700)
Q Consensus       276 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  355 (700)
                      ..|.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++..-..+|.+|.+
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence            344444455555443 2333333444555555555555433 33233445555555555555432 33333445555555


Q ss_pred             CCEEEccCccCcccCCCccCCCCCcEEEccCC
Q 043317          356 LKLLSVSENYLSGSMTSSFNLSSLKHLYVQKN  387 (700)
Q Consensus       356 L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n  387 (700)
                      |+.+++.++....  ...+.+.+|+.+.+..+
T Consensus       359 L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          359 LNNIEYSGSRSQW--NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred             CCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence            5555555543321  11224455555555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=8e-13  Score=120.92  Aligned_cols=66  Identities=26%  Similarity=0.281  Sum_probs=55.4

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCc
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIP  582 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  582 (700)
                      ++|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|.++++|+.|+|++|+++...+
T Consensus        54 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            567778888888887777778889999999999999998777789999999999999999986543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.40  E-value=2.9e-11  Score=127.07  Aligned_cols=332  Identities=9%  Similarity=0.075  Sum_probs=163.1

Q ss_pred             cchhccCCC-CCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCc--cccccccCCCCCCCcccEEEeeCCCCCCcChh
Q 043317           54 LSSTITSLT-SLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTN--NMLLVKTENFLPTFQLKVLELANCSLNVVPTF  130 (700)
Q Consensus        54 ~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~  130 (700)
                      ...+|.++. .|+.+.+..+ ++ .+...+|.++++|+.+.+..+.  ....+...+|..+.+|+.+.+..+ ++     
T Consensus        55 g~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-----  126 (394)
T 4gt6_A           55 GDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-----  126 (394)
T ss_dssp             CTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-----
T ss_pred             CHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-----
Confidence            344555553 3666666543 33 3444556666666666554431  123344444555544444443322 22     


Q ss_pred             hcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccC
Q 043317          131 LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKK  210 (700)
Q Consensus       131 l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  210 (700)
                                         .++...|..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +. .+....+. ..+
T Consensus       127 -------------------~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~  183 (394)
T 4gt6_A          127 -------------------EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTA  183 (394)
T ss_dssp             -------------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCC
T ss_pred             -------------------eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccc
Confidence                               333333344444444444322 22222334444444555544433 11 33334443 245


Q ss_pred             CcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcc
Q 043317          211 LLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE  290 (700)
Q Consensus       211 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  290 (700)
                      |+.+.+..+- ......+|.++..++......+..... ...++........           ....+.....+..+.+.
T Consensus       184 l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ip  250 (394)
T 4gt6_A          184 LTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAI-DNVLYEKSANGDY-----------ALIRYPSQREDPAFKIP  250 (394)
T ss_dssp             CSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBS-SSCEEEECTTSCE-----------EEEECCTTCCCSEEECC
T ss_pred             eeEEEECCcc-cccccchhhhccccceecccccccccc-cceeecccccccc-----------cccccccccccceEEcC
Confidence            6666655432 223444555666666655544333211 1101010000000           00011112233334332


Q ss_pred             cCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccC
Q 043317          291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM  370 (700)
Q Consensus       291 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  370 (700)
                      . .++.....+|..+..|+.+.+..+... ....+|.++++|+.+.+.. .++.....+|.+|.+|+.+++..+ ++.+.
T Consensus       251 ~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~  326 (394)
T 4gt6_A          251 N-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQIL  326 (394)
T ss_dssp             T-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred             C-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEeh
Confidence            2 233344456677777777777655433 4456677777777777753 454455566777778888877654 66666


Q ss_pred             CCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCcc
Q 043317          371 TSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRF  437 (700)
Q Consensus       371 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  437 (700)
                      ...| +|.+|+.+.+..+ ++..-..+|.+|++|+.+++.++....   .++..+..|+.+.+..+.+
T Consensus       327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            6667 7788888888654 554556778888888888888776431   3566677777777766544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=3.2e-12  Score=117.30  Aligned_cols=105  Identities=18%  Similarity=0.253  Sum_probs=89.2

Q ss_pred             ceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 043317          520 VGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN  599 (700)
Q Consensus       520 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  599 (700)
                      +.+++++|+++ .+|..+.  ++|++|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67999999997 6777665  89999999999999999999999999999999999999887778899999999999999


Q ss_pred             cCcccCCC-CCCCCCcCCCccCCCcCCcC
Q 043317          600 NLSGLIPD-KGQYSTFDESSYRGNLYLCG  627 (700)
Q Consensus       600 ~l~~~~p~-~~~~~~~~~~~~~gn~~lcg  627 (700)
                      ++++..+. ...+..+....+.+|++-|.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            99977664 34455555556667666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=1.2e-13  Score=143.05  Aligned_cols=86  Identities=20%  Similarity=0.255  Sum_probs=50.8

Q ss_pred             cccceEECCCCcCcc----cCCccccCcCCCcEEeCCCccCccc----cCcccccccCCCEEeCCCCcCccc----Cccc
Q 043317          517 NYMVGLDLSCNELTG----NVPSEIGDLQKIRGLNLSHNCLSGS----IPRSFSNLQMIESLDLSNNRLSGQ----IPAQ  584 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~  584 (700)
                      +.|+.|+|++|.++.    .++..+..+++|++|+|++|.|++.    ++..+...++|+.|||++|.++..    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            445666666666653    2233345566677777777766532    244555666777777777777642    3334


Q ss_pred             ccCCCCCCeEeccCCcCc
Q 043317          585 LIELNFLSNFNVSYNNLS  602 (700)
Q Consensus       585 l~~l~~L~~L~ls~N~l~  602 (700)
                      +...+.|++|||++|+++
T Consensus       235 L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          235 AREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHCSSCCEEECTTSSCC
T ss_pred             HHhCCCCCEEeccCCCCC
Confidence            445566777777777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=1.3e-13  Score=143.00  Aligned_cols=187  Identities=20%  Similarity=0.148  Sum_probs=88.0

Q ss_pred             ccCCcEEEccCCcCCccCCccccC-----CCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccccccccc----
Q 043317          208 LKKLLVLDISNNHFEGNIPSSVGE-----MKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKD----  278 (700)
Q Consensus       208 l~~L~~L~L~~n~i~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----  278 (700)
                      .+.|++|++++|.++......+..     .++|+.|+|++|.+++.....+...+++|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            456777777777776433333322     25777777777777554333443445566666666666654332222    


Q ss_pred             -CCCCCCcEEEcccCccccc----ccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCC
Q 043317          279 -LNLTQMEFLYLENNKFSGK----IEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH  353 (700)
Q Consensus       279 -~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  353 (700)
                       ...++|++|++++|.++..    ++..+..+++|++|+|++|.+++....                    .++..+..+
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--------------------~L~~~L~~~  210 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--------------------LLAAQLDRN  210 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--------------------HHHHHGGGC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--------------------HHHHHHhcC
Confidence             1234455555555554431    122223344444444444444321100                    112333444


Q ss_pred             CCCCEEEccCccCcccCCCcc-----CCCCCcEEEccCCcCccCcchhhhCC---C--CccEEE--CcCCccc
Q 043317          354 RTLKLLSVSENYLSGSMTSSF-----NLSSLKHLYVQKNALSGPIPDMLFRS---S--KLMTLD--LRGNNLE  414 (700)
Q Consensus       354 ~~L~~L~l~~n~l~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~---~--~L~~L~--l~~N~l~  414 (700)
                      ++|+.|++++|.+++.....+     ..++|++|++++|.+++.....+..+   .  .|+.+.  +..+.+.
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            455555555555543221111     24566666666666654433333332   1  155555  5555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=2.1e-11  Score=125.90  Aligned_cols=88  Identities=20%  Similarity=0.191  Sum_probs=80.9

Q ss_pred             ccccceEECCC-CcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 043317          516 LNYMVGLDLSC-NELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNF  594 (700)
Q Consensus       516 l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  594 (700)
                      +++|+.|+|++ |.+++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..+..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            36789999996 999988889999999999999999999999999999999999999999999988777777777 9999


Q ss_pred             eccCCcCccc
Q 043317          595 NVSYNNLSGL  604 (700)
Q Consensus       595 ~ls~N~l~~~  604 (700)
                      +|++|++.+.
T Consensus       109 ~l~~N~~~c~  118 (347)
T 2ifg_A          109 VLSGNPLHCS  118 (347)
T ss_dssp             ECCSSCCCCC
T ss_pred             EeeCCCccCC
Confidence            9999999854

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=3.2e-11  Score=124.54  Aligned_cols=107  Identities=21%  Similarity=0.238  Sum_probs=91.7

Q ss_pred             eEECCCC-cCcccCCccccCcCCCcEEeCCC-ccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccC
Q 043317          521 GLDLSCN-ELTGNVPSEIGDLQKIRGLNLSH-NCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSY  598 (700)
Q Consensus       521 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  598 (700)
                      .++++++ +++ .+|. +..+++|++|+|++ |+|++..+..|+++++|+.|+|++|+|++.+|..|..+++|++|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4789998 898 5777 99999999999996 999988889999999999999999999999999999999999999999


Q ss_pred             CcCcccCCCCCCCCCcCCCccCCCcCCcCcC
Q 043317          599 NNLSGLIPDKGQYSTFDESSYRGNLYLCGPT  629 (700)
Q Consensus       599 N~l~~~~p~~~~~~~~~~~~~~gn~~lcg~~  629 (700)
                      |+|++.+|.......+....+.+|+.-|.+.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            9999877754333335556677788777653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.15  E-value=1.6e-09  Score=113.14  Aligned_cols=310  Identities=11%  Similarity=0.049  Sum_probs=164.2

Q ss_pred             cCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcc
Q 043317           35 KYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQL  114 (700)
Q Consensus        35 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  114 (700)
                      ....+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++ .++..+|.++ +|+.+.+..  ....+...+|..+ +|
T Consensus        43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGT-DL  115 (379)
T ss_dssp             GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECT--TCCEECTTTTTTC-CC
T ss_pred             ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCc--eeeEeccceeccC-Cc
Confidence            3445566666653 345455556666666666666543 33 3444556655 455555532  2334444455443 56


Q ss_pred             cEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCC
Q 043317          115 KVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSN  194 (700)
Q Consensus       115 ~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  194 (700)
                      +.+.+..+ +..+....+...+++.+.+..+ ++ .+....+..+..++...+..+...........         ....
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~  183 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVL---------YNKN  183 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTCCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEE---------EETT
T ss_pred             ccccCCCc-cccccccccccceeeeeeccce-ee-ccccchhcccccccccccccccceeeccccee---------cccc
Confidence            66665443 3333333333334554444332 22 33333334555555555443322100000000         0000


Q ss_pred             cCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccccc
Q 043317          195 NFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF  274 (700)
Q Consensus       195 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  274 (700)
                      .   .....+. ....+..+.+.... .......+..+.+|+.+.+..+ +.. +....+.++..|+.+.+..+ ++...
T Consensus       184 ~---~~~~~~~-~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~-i~~~~f~~~~~L~~i~lp~~-v~~I~  255 (379)
T 4h09_A          184 K---TILESYP-AAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTT-LGDGAFYGMKALDEIAIPKN-VTSIG  255 (379)
T ss_dssp             S---SEEEECC-TTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCE-ECTTTTTTCSSCCEEEECTT-CCEEC
T ss_pred             c---ceecccc-ccccccccccccce-eEEeecccccccccceeeeccc-eeE-EccccccCCccceEEEcCCC-ccEeC
Confidence            0   0000011 12334444443322 2233445556667777766543 222 22333455777777777655 55555


Q ss_pred             ccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCC
Q 043317          275 FSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHR  354 (700)
Q Consensus       275 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  354 (700)
                      ...+.++.+|+.+.+..+ ++......|.++++|+.+.+.++.++.....+|.++.+|+.+.+..+ ++..-..+|.+|.
T Consensus       256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  333 (379)
T 4h09_A          256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK  333 (379)
T ss_dssp             TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence            566777778888877543 44455567777888888888877777566677888888888888654 5545566788888


Q ss_pred             CCCEEEccCccCcccCCCcc
Q 043317          355 TLKLLSVSENYLSGSMTSSF  374 (700)
Q Consensus       355 ~L~~L~l~~n~l~~~~~~~~  374 (700)
                      +|+.+.+..+ ++.+....|
T Consensus       334 ~L~~i~ip~~-v~~I~~~aF  352 (379)
T 4h09_A          334 ALSTISYPKS-ITLIESGAF  352 (379)
T ss_dssp             TCCCCCCCTT-CCEECTTTT
T ss_pred             CCCEEEECCc-cCEEchhHh
Confidence            8888887654 565666666

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.12  E-value=3.5e-09  Score=110.61  Aligned_cols=317  Identities=13%  Similarity=0.086  Sum_probs=211.6

Q ss_pred             hccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEeeCCCCCCcChhhcCCCC
Q 043317           57 TITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYD  136 (700)
Q Consensus        57 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~  136 (700)
                      .+....+|+.+.+... ++ .++..+|.++.+|+.+++..+  ...+...+|.++ +|+.+.+.. ++..++...+...+
T Consensus        41 ~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~  114 (379)
T 4h09_A           41 WYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTD  114 (379)
T ss_dssp             TGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCC
T ss_pred             ccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEeccceeccCC
Confidence            4556678888888643 44 456678888888888888643  456777788776 677777754 36666666555567


Q ss_pred             CCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEc
Q 043317          137 LKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDI  216 (700)
Q Consensus       137 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  216 (700)
                      |+.+.+..+ +. .+....|.+ .+++...+..+ ++......+..+..++...+..+..... ...... .        
T Consensus       115 L~~i~lp~~-~~-~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~-~~~~~~-~--------  180 (379)
T 4h09_A          115 LDDFEFPGA-TT-EIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYV-AENYVL-Y--------  180 (379)
T ss_dssp             CSEEECCTT-CC-EECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEE-EETTEE-E--------
T ss_pred             cccccCCCc-cc-ccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceee-ccccee-c--------
Confidence            888888765 33 455555534 35666665443 3334455566666676666654432211 100000 0        


Q ss_pred             cCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccc
Q 043317          217 SNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSG  296 (700)
Q Consensus       217 ~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  296 (700)
                        +. .......+.....+..+.+..... . +....+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++.
T Consensus       181 --~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~  253 (379)
T 4h09_A          181 --NK-NKTILESYPAAKTGTEFTIPSTVK-T-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS  253 (379)
T ss_dssp             --ET-TSSEEEECCTTCCCSEEECCTTCC-E-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE
T ss_pred             --cc-ccceecccccccccccccccccee-E-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE
Confidence              00 011222344555666666544322 1 22233456889999998755 44556677888999999999876 665


Q ss_pred             cccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-C
Q 043317          297 KIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-N  375 (700)
Q Consensus       297 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~  375 (700)
                      .....+.++.+|+.+.+..+ +......+|.++.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+....| +
T Consensus       254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  331 (379)
T 4h09_A          254 IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKN  331 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             eCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhC
Confidence            66778899999999999765 55455678999999999999999888777888999999999999754 777777888 8


Q ss_pred             CCCCcEEEccCCcCccCcchhhhCCCCc
Q 043317          376 LSSLKHLYVQKNALSGPIPDMLFRSSKL  403 (700)
Q Consensus       376 l~~L~~L~l~~n~l~~~~~~~~~~~~~L  403 (700)
                      |.+|+.+.+..+ ++.+-..+|.++..+
T Consensus       332 C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          332 CKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             CTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             CCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            999999999765 554555677776433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=1.9e-09  Score=110.51  Aligned_cols=83  Identities=16%  Similarity=0.224  Sum_probs=53.8

Q ss_pred             ccccceEECCCCcCcccCCccc---cCcCCCcEEeCCCccCccc----cCcccccccCCCEEeCCCCcCcccCcccccC-
Q 043317          516 LNYMVGLDLSCNELTGNVPSEI---GDLQKIRGLNLSHNCLSGS----IPRSFSNLQMIESLDLSNNRLSGQIPAQLIE-  587 (700)
Q Consensus       516 l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-  587 (700)
                      +++|+.|+|++|.+.+..+..+   ..+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            4667777777777664332222   2467788888888888753    3444566788888888888887544444443 


Q ss_pred             CCCCCeEeccCCc
Q 043317          588 LNFLSNFNVSYNN  600 (700)
Q Consensus       588 l~~L~~L~ls~N~  600 (700)
                      +  ...++++.|+
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            3  4567888776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=6.8e-09  Score=106.36  Aligned_cols=135  Identities=17%  Similarity=0.162  Sum_probs=81.0

Q ss_pred             cccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhcc--CCCCCCEEEccC--ccCccc------C
Q 043317          301 GLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLL--NHRTLKLLSVSE--NYLSGS------M  370 (700)
Q Consensus       301 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~l~~--n~l~~~------~  370 (700)
                      .+..+++|+.|++++|.-. .++. +. +++|+.|++..|.+.......+.  .+++|+.|+|+.  |...+.      .
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            3445566666666665211 1222 22 56677777776666543333333  567777777642  111111      0


Q ss_pred             CCc--cCCCCCcEEEccCCcCccCcchhhh---CCCCccEEECcCCccccc----CChhhhccCCCCEEecCCCccC
Q 043317          371 TSS--FNLSSLKHLYVQKNALSGPIPDMLF---RSSKLMTLDLRGNNLEGQ----IPDQICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       371 ~~~--~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  438 (700)
                      +..  ..+++|++|++++|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            111  1368899999988888654444443   467899999999888753    3334456788999999988776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=5.7e-08  Score=89.68  Aligned_cols=43  Identities=12%  Similarity=0.115  Sum_probs=22.5

Q ss_pred             hhhCCCCccEEECcCC-ccccc----CChhhhccCCCCEEecCCCccC
Q 043317          396 MLFRSSKLMTLDLRGN-NLEGQ----IPDQICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       396 ~~~~~~~L~~L~l~~N-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  438 (700)
                      .+...+.|++|++++| .+...    +...+...++|++|+|++|++.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            3444556666666665 55422    2233344556666666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=1.1e-07  Score=87.64  Aligned_cols=63  Identities=21%  Similarity=0.298  Sum_probs=41.1

Q ss_pred             CCCCcEEEccCCcCccC----cchhhhCCCCccEEEC--cCCccccc----CChhhhccCCCCEEecCCCccC
Q 043317          376 LSSLKHLYVQKNALSGP----IPDMLFRSSKLMTLDL--RGNNLEGQ----IPDQICQLRRLGMMDLSHNRFN  438 (700)
Q Consensus       376 l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l--~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  438 (700)
                      .++|++|+|++|.+.+.    +...+...++|++|++  ++|.+...    +...+...++|++|++++|.+.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            35566666666666532    3445556677888888  77777643    2344555678888888888774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.39  E-value=2.4e-07  Score=89.80  Aligned_cols=64  Identities=28%  Similarity=0.392  Sum_probs=29.4

Q ss_pred             ccccceEECCCCcCcc--cCCccccCcCCCcEEeCCCccCccccCccccccc--CCCEEeCCCCcCcccC
Q 043317          516 LNYMVGLDLSCNELTG--NVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQ--MIESLDLSNNRLSGQI  581 (700)
Q Consensus       516 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~  581 (700)
                      ++.|+.|+|++|.|++  .+|..++.+++|+.|+|++|+|++.  ..+..++  +|++|+|++|.+.+.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence            3445555555555554  2234444455555555555555432  1222222  4555555555554433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=1.5e-07  Score=91.31  Aligned_cols=84  Identities=21%  Similarity=0.281  Sum_probs=65.8

Q ss_pred             EECCCCcCc---ccCCccccCcCCCcEEeCCCccCcc--ccCcccccccCCCEEeCCCCcCcccCcccccCCC--CCCeE
Q 043317          522 LDLSCNELT---GNVPSEIGDLQKIRGLNLSHNCLSG--SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELN--FLSNF  594 (700)
Q Consensus       522 L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L  594 (700)
                      ++++.|...   +..+.....+++|++|+|++|+|++  .+|..++.+++|+.|+|++|++++.  ..+..+.  .|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            677888433   2222233568899999999999997  4567888999999999999999976  3344444  99999


Q ss_pred             eccCCcCcccCCC
Q 043317          595 NVSYNNLSGLIPD  607 (700)
Q Consensus       595 ~ls~N~l~~~~p~  607 (700)
                      +|++|++++.+|+
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999987764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.98  E-value=2.4e-06  Score=76.53  Aligned_cols=36  Identities=11%  Similarity=0.144  Sum_probs=19.8

Q ss_pred             CCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCc
Q 043317           38 SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNN   73 (700)
Q Consensus        38 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   73 (700)
                      .+|++||+|+|.++..--..+.++++|++|+|++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            345566666665554444445555556666665553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.83  E-value=1.4e-05  Score=71.66  Aligned_cols=33  Identities=18%  Similarity=0.117  Sum_probs=12.5

Q ss_pred             CcEEEcCCcccccccccccCCCCCCcEEEcccC
Q 043317          260 LWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENN  292 (700)
Q Consensus       260 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  292 (700)
                      |++||++++.++......+..+++|+.|+|++|
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            344444444433333333333333333333333

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.16  E-value=0.00062  Score=58.00  Aligned_cols=37  Identities=24%  Similarity=0.201  Sum_probs=20.5

Q ss_pred             CCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCc
Q 043317          566 MIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS  602 (700)
Q Consensus       566 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  602 (700)
                      +|+.|||++|+|+...+..|..+++|+.|+|++|++.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3555555555555544455555555555666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.00  E-value=0.0013  Score=56.09  Aligned_cols=56  Identities=21%  Similarity=0.257  Sum_probs=47.7

Q ss_pred             eEECCCCcCc-ccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCc
Q 043317          521 GLDLSCNELT-GNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS  578 (700)
Q Consensus       521 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  578 (700)
                      .++.++++++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            6889999997 35665443  46999999999999888888999999999999999886

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.00  E-value=0.00051  Score=62.68  Aligned_cols=38  Identities=11%  Similarity=0.115  Sum_probs=18.9

Q ss_pred             CCCccEEECcCC---cccc----cCChhhhccCCCCEEecCCCcc
Q 043317          400 SSKLMTLDLRGN---NLEG----QIPDQICQLRRLGMMDLSHNRF  437 (700)
Q Consensus       400 ~~~L~~L~l~~N---~l~~----~~~~~~~~l~~L~~L~Ls~N~l  437 (700)
                      -+.|++|+|++|   .+..    .+...+..-+.|+.|+++.|.+
T Consensus       125 N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          125 TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            345666666543   2221    1223444556666777665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.99  E-value=0.00071  Score=61.72  Aligned_cols=114  Identities=14%  Similarity=0.208  Sum_probs=81.7

Q ss_pred             cccCCCCCcEEEcccC-cCCCC----cchhhcCCCCCcEEEcccCcCccc----chhhccCCCCCCEEEccCccCcccCC
Q 043317          301 GLLNSTKLYQLDISHN-FLSGH----IPHWMGNFSNLEILLMSNNCLEGN----IPVQLLNHRTLKLLSVSENYLSGSMT  371 (700)
Q Consensus       301 ~~~~~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~  371 (700)
                      .+.+-+.|++|+|++| .+...    +..++..-..|+.|+|++|.+...    +...+.....|+.|+|++|.|.....
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3455688999999986 77642    345566678899999999999743    34455667899999999999976433


Q ss_pred             Ccc-----CCCCCcEEEccCC---cCcc----CcchhhhCCCCccEEECcCCccc
Q 043317          372 SSF-----NLSSLKHLYVQKN---ALSG----PIPDMLFRSSKLMTLDLRGNNLE  414 (700)
Q Consensus       372 ~~~-----~l~~L~~L~l~~n---~l~~----~~~~~~~~~~~L~~L~l~~N~l~  414 (700)
                      ..+     .-+.|++|+|++|   .+..    .+...+..-+.|+.|+++.|.+.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            222     3567999999865   3332    23445666789999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	700
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.1 bits (204), Expect = 1e-17
 Identities = 67/385 (17%), Positives = 119/385 (30%), Gaps = 28/385 (7%)

Query: 13  TGLANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYN 72
           T LA      +   + + +     L  +  L      +  S+   +  L +L  ++ S N
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 76

Query: 73  NFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLL 132
                 PL +L     + +      +   L    N                L  +     
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 133 HQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH---- 188
            +     +              +   N   ++  L N +    L + + K   +      
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 189 -----LDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKN 243
                L A++N      P  + T L     L ++ N  +     ++  +  L  L L+ N
Sbjct: 197 TNLESLIATNNQISDITPLGILTNLD---ELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 244 NFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLL 303
             S   +   L+G   L  L L  N       S    LT +  L L  N+         L
Sbjct: 252 QIS---NLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 304 NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE 363
               L  L +  N +S   P  + + + L+ L  +NN +       L N   +  LS   
Sbjct: 307 K--NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 364 NYLSGSMTSSFNLSSLKHLYVQKNA 388
           N +S   T   NL+ +  L +   A
Sbjct: 361 NQISDL-TPLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.7 bits (190), Expect = 6e-16
 Identities = 60/411 (14%), Positives = 120/411 (29%), Gaps = 54/411 (13%)

Query: 189 LDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSED 248
                 N   T+ Q     L ++  L       +      V  +  L  ++ S N  ++ 
Sbjct: 27  TVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI 81

Query: 249 FSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKL 308
                LT  + +   +    +        +L    +    + +      +          
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 309 YQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSG 368
             +              +   + +  L    N           N  +             
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS------------- 188

Query: 369 SMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLG 428
            ++    L++L+ L    N +S   P  +   + L  L L GN L+      +  L  L 
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLT 244

Query: 429 MMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCK 488
            +DL++N+ +   P      L      + L   ++S   PL      T      +     
Sbjct: 245 DLDLANNQISNLAPLSGLTKLT----ELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 489 RDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNL 548
             +                       NL  +  L L  N ++   P  +  L K++ L  
Sbjct: 301 SPIS----------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 336

Query: 549 SHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN 599
           ++N +S     S +NL  I  L   +N++S   P  L  L  ++   ++  
Sbjct: 337 ANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 7   NLYIFLTGLANLTILQVLDLSG---SSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTS 63
           N    ++ ++NL  L  L L     S  + +  L+ L+ L  ++N++S    S++ +LT+
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV--SSLANLTN 352

Query: 64  LEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
           + +L   +N      PL++L   +++  L L+ 
Sbjct: 353 INWLSAGHNQISDLTPLANL---TRITQLGLND 382

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.9 bits (177), Expect = 2e-14
 Identities = 60/271 (22%), Positives = 116/271 (42%), Gaps = 8/271 (2%)

Query: 179 PNTKHDFLHHLDASSNNFIG--TLPQDMGTILKKLLVLDISNNH-FEGNIPSSVGEMKEL 235
            +T+   +++LD S  N      +P  +   L  L  L I   +   G IP ++ ++ +L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 236 IILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFS 295
             L+++  N S        +   +L  LD S N   G       +L  +  +  + N+ S
Sbjct: 104 HYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 296 GKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRT 355
           G I +   + +KL+                     NL  + +S N LEG+  V   + + 
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 356 LKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEG 415
            + + +++N L+  +       +L  L ++ N + G +P  L +   L +L++  NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 416 QIPDQICQLRRLGMMDLSHNRF--NGSIPSC 444
           +IP Q   L+R  +   ++N+      +P+C
Sbjct: 283 EIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.5 bits (176), Expect = 2e-14
 Identities = 57/263 (21%), Positives = 89/263 (33%), Gaps = 6/263 (2%)

Query: 372 SSFNLSSLKHLYVQKNALSG--PIPDMLFRSSKLMTLDLRGN-NLEGQIPDQICQLRRLG 428
           +      + +L +    L    PIP  L     L  L + G  NL G IP  I +L +L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 429 MMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGEL---SIFPPLGFCYIGTYYNSTLDLE 485
            + ++H   +G+IP   + +      +                L      T+  + +   
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 486 VCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRG 545
           +       S     +             +  N  +        +     S +    K   
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 546 LNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLI 605
                              + +  LDL NNR+ G +P  L +L FL + NVS+NNL G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 606 PDKGQYSTFDESSYRGNLYLCGP 628
           P  G    FD S+Y  N  LCG 
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 54/286 (18%), Positives = 85/286 (29%), Gaps = 29/286 (10%)

Query: 56  STITSLTSLEYLDLSYNNFEGPCPL-SSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQL 114
            T T    +  LDLS  N   P P+ SSLAN   L  L +   NN++           QL
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 115 KVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTG 174
             L + + +++      L Q           N +       + +   L  +    N  +G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 175 NLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKE 234
            +         L      S N +                                     
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPP---------------------------TFAN 196

Query: 235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKF 294
           L +  +  +    +     L G            N       K      +  L L NN+ 
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

Query: 295 SGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNN 340
            G + +GL     L+ L++S N L G IP   GN    ++   +NN
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 6e-12
 Identities = 56/261 (21%), Positives = 85/261 (32%), Gaps = 5/261 (1%)

Query: 137 LKYLDLSLNNLVGDFP-SWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN 195
           +  LDLS  NL   +P    L N   L  L++   +       P        H    ++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 196 FIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLT 255
            +     D  + +K L+ LD S N   G +P S+  +  L+ +    N  S      + +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 256 GCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISH 315
                  + +S N   G+      NL         N             S K  Q     
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF--GSDKNTQKIHLA 229

Query: 316 NFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFN 375
                     +G   NL  L + NN + G +P  L   + L  L+VS N L G +    N
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 376 LSSLKHLYVQKNAL--SGPIP 394
           L          N      P+P
Sbjct: 290 LQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.7 bits (148), Expect = 7e-11
 Identities = 39/255 (15%), Positives = 79/255 (30%), Gaps = 25/255 (9%)

Query: 39  HLKVLDISHNQLSG--SLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
            +  LD+S   L     + S++ +L  L +L +   N        ++A  ++L  L ++ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 97  TNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWML 156
           TN    +          + +    N     +P  +    +L  +    N + G  P    
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 157 QNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASS---------------------NN 195
             +     + ++ N  TG +       +      + +                       
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 196 FIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLT 255
                      + K L  LD+ NN   G +P  + ++K L  L++S NN       P   
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGG 288

Query: 256 GCISLWFLDLSDNNF 270
                     ++N  
Sbjct: 289 NLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.6 bits (140), Expect = 7e-10
 Identities = 61/256 (23%), Positives = 92/256 (35%), Gaps = 26/256 (10%)

Query: 215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP-FLTGCISLWFLDLSDN-NFYG 272
           D  N  + G +  +  +   +  L LS  N  + +  P  L     L FL +    N  G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 273 QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNL 332
                   LTQ+ +LY+ +   SG I + L     L  LD S+N LSG +P  + +  NL
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 333 EILLMSNNCLEGNIPVQLLNHRTL------------------------KLLSVSENYLSG 368
             +    N + G IP    +   L                          + +S N L G
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 369 SMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLG 428
             +  F                      +  S  L  LDLR N + G +P  + QL+ L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 429 MMDLSHNRFNGSIPSC 444
            +++S N   G IP  
Sbjct: 272 SLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 5e-07
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 32  NCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEV 91
             +    +L  LD+ +N++ G+L   +T L  L  L++S+NN  G  P     N  + +V
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDV 295

Query: 92  LLLSSTNNML 101
              ++ N  L
Sbjct: 296 SAYAN-NKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 26  LSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSS 82
           + G+    L  L  L  L++S N L G +     +L   +    + N      PL +
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 42/299 (14%), Positives = 80/299 (26%), Gaps = 32/299 (10%)

Query: 282 TQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNC 341
                L L+NNK +   +    N   L+ L + +N +S   P        LE L +S N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 342 LEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSS 401
           L+          + L++       +  S+ +  N   +  L       SG          
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 402 KLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGG 461
           KL  + +   N+          L  L    L  N+      +    +       +     
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGL----- 202

Query: 462 ELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG 521
             S                 L       +                       ++  Y+  
Sbjct: 203 --SFNSISAVDNGSLANTPHLRELHLNNNKL--------------VKVPGGLADHKYIQV 246

Query: 522 LDLSCNELTG------NVPSEIGDLQKIRGLNLSHNCLSGS--IPRSFSNLQMIESLDL 572
           + L  N ++         P          G++L  N +      P +F  + +  ++ L
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 1/231 (0%)

Query: 377 SSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR 436
                L +Q N ++            L TL L  N +    P     L +L  + LS N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 437 FNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQ 496
                      + +  +   ++     S+F  L    +     + L     +   F   +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 497 QVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGS 556
           ++    +               +  L L  N++T    + +  L  +  L LS N +S  
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 557 IPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
              S +N   +  L L+NN+L  ++P  L +  ++    +  NN+S +  +
Sbjct: 211 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 8e-13
 Identities = 45/261 (17%), Positives = 86/261 (32%), Gaps = 12/261 (4%)

Query: 160 TKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNN 219
               +L L NN  T            LH L   +N      P      L KL  L +S N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSKN 89

Query: 220 HFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDL 279
             +         ++EL +            S       + +  L  +     G       
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKV--RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSN 339
            + ++ ++ + +   +  I +GL  S  L +L +  N ++      +   +NL  L +S 
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 340 NCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSG------PI 393
           N +       L N   L+ L ++ N L        +   ++ +Y+  N +S         
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 394 PDMLFRSSKLMTLDLRGNNLE 414
           P    + +    + L  N ++
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 1e-12
 Identities = 48/264 (18%), Positives = 82/264 (31%), Gaps = 15/264 (5%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
               +LD+ +N+++        +L +L  L L  N      P  + A   KLE L LS  
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSK- 88

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ 157
           N +  +  +      +L+V E     +       L+Q  +  L  +     G       Q
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQ 147

Query: 158 NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDIS 217
              KL  + + + + T    +P      L  L    N         +   L  L  L +S
Sbjct: 148 GMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLS 203

Query: 218 NNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG----- 272
            N        S+     L  LHL+ N   +            +  + L +NN        
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAIGSND 261

Query: 273 -QFFSKDLNLTQMEFLYLENNKFS 295
                 +        + L +N   
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 42/237 (17%), Positives = 70/237 (29%), Gaps = 3/237 (1%)

Query: 259 SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFL 318
               LDL +N           NL  +  L L NNK S           KL +L +S N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 319 SGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSS 378
                        L +       +  ++   L     ++L +           +   +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 379 LKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFN 438
           L ++ +    ++  IP  L  S  L  L L GN +       +  L  L  + LS N  +
Sbjct: 152 LSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 439 GSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSP 495
                   N       +++               YI   Y    ++     + F  P
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 55/262 (20%), Positives = 85/262 (32%), Gaps = 24/262 (9%)

Query: 21  LQVLDLSGSS-----SNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFE 75
             +LDL  +          K L +L  L + +N++S         L  LE L LS N  +
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 76  GPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQY 135
                       K    L    N +  V+   F    Q+ V+EL    L           
Sbjct: 93  ELPE-----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 136 DLKYL---DLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS 192
            +K L    ++  N+    P  +  +   L  L L  N  T          + L  L  S
Sbjct: 148 GMKKLSYIRIADTNI-TTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP 252
            N+               L  L ++NN     +P  + + K + +++L  NN S   S  
Sbjct: 204 FNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 253 F-----LTGCISLWFLDLSDNN 269
           F      T   S   + L  N 
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.6 bits (135), Expect = 3e-09
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 4/225 (1%)

Query: 400 SSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLF 459
                 LDL+ N +          L+ L  + L +N+ +   P  F  +++  +E + L 
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK--LERLYLS 87

Query: 460 GGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYM 519
             +L   P      +        ++   ++ +F    Q+ V  +  N  +     N  + 
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 520 VGLDLSCNELTGNVPSEI--GDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRL 577
               LS   +     + I  G    +  L+L  N ++     S   L  +  L LS N +
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 578 SGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGN 622
           S      L     L   +++ N L  +      +          N
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 10/155 (6%)

Query: 24  LDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSL 83
           L  SG  +   + +  L  + I+   ++           SL  L L  N        +SL
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDA-ASL 191

Query: 84  ANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLS 143
              + L  L LS  +   +           L+ L L N  L  VP  L     ++ + L 
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNNKLVKVPGGLADHKYIQVVYLH 250

Query: 144 LNNLVG-----DFPSWMLQNNTKLEVLFLTNNSFT 173
            NN+         P            + L +N   
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 533 VPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLS 592
           VP ++        L+L +N ++      F NL+ + +L L NN++S   P     L  L 
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 593 NFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTINKSCN 635
              +S N L  L     +              +     N    
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 4e-12
 Identities = 43/269 (15%), Positives = 76/269 (28%), Gaps = 5/269 (1%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP 252
               +  +P  +    +    + +  N       +S    + L IL L  N  +   +  
Sbjct: 19  PQQGLQAVPVGIPAASQ---RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 253 FLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLD 312
           F    +        +        +    L ++  L+L+                 L  L 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 313 ISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTS 372
           +  N L         +  NL  L +  N +            +L  L + +N ++     
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 373 SF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMD 431
           +F +L  L  LY+  N LS    + L     L  L L  N               L    
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFR 254

Query: 432 LSHNRFNGSIPSCFTNMLQWTIENVDLFG 460
            S +    S+P          +   DL G
Sbjct: 255 GSSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 5e-11
 Identities = 50/300 (16%), Positives = 87/300 (29%), Gaps = 50/300 (16%)

Query: 282 TQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNC 341
              + ++L  N+ S            L  L +  N L+          + LE L +S+N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 342 LEGNI-PVQLLNHRTLKLLSVSENYLSGSMTS-SFNLSSLKHLYVQKNALSGPIPDMLFR 399
              ++ P        L  L +    L          L++L++LY+Q NAL     D    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 400 SSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLF 459
              L  L L GN +          L  L  + L  NR     P  F ++ +         
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-------- 203

Query: 460 GGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYM 519
                         +  + N+   L         + Q                       
Sbjct: 204 ------------MTLYLFANNLSALPTEALAPLRALQY---------------------- 229

Query: 520 VGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG 579
             L L+ N    +          ++    S + +  S+P+  +   +     L+ N L G
Sbjct: 230 --LRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 49/301 (16%), Positives = 96/301 (31%), Gaps = 50/301 (16%)

Query: 305 STKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSEN 364
                ++ +  N +S           NL IL + +N L             L+ L +S+N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 365 YLSGSMTSSF--NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQIC 422
               S+  +    L  L  L++ +  L    P +    + L  L L+ N L+    D   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 423 QLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTL 482
            L  L  + L  NR +      F  +   +++ + L    ++   P  F           
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGL--HSLDRLLLHQNRVAHVHPHAFRD--------- 199

Query: 483 DLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQK 542
                                            L  ++ L L  N L+      +  L+ 
Sbjct: 200 ---------------------------------LGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602
           ++ L L+ N       R+      ++    S++ +   +P +L   +      ++ N+L 
Sbjct: 227 LQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQ 282

Query: 603 G 603
           G
Sbjct: 283 G 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 46/259 (17%), Positives = 80/259 (30%), Gaps = 7/259 (2%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
           +  + + +  N++S   +++  +  +L  L L  N        ++    + LE L LS  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ 157
             +  V    F    +L  L L  C L  +   L             +N +   P    +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 158 NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDIS 217
           +   L  LFL  N  +            L  L    N      P      L +L+ L + 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLF 209

Query: 218 NNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSK 277
            N+       ++  ++ L  L L+ N +  D     L     L     S +         
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSLPQ- 266

Query: 278 DLNLTQMEFLYLENNKFSG 296
              L   +   L  N   G
Sbjct: 267 --RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 46/238 (19%), Positives = 80/238 (33%), Gaps = 8/238 (3%)

Query: 377 SSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR 436
           ++ + +++  N +S            L  L L  N L          L  L  +DLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 437 FNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLD---LEVCKRDMFT 493
              S+     + L   +  + L    L    P  F  +       L    L+    D F 
Sbjct: 92  QLRSVDPATFHGLGR-LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 494 SPQQVKVEFVTKNRYELYNGSNLNYMVGL---DLSCNELTGNVPSEIGDLQKIRGLNLSH 550
               +   F+  NR           +  L    L  N +    P    DL ++  L L  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 551 NCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDK 608
           N LS     + + L+ ++ L L++N       A+ +   +L  F  S + +   +P +
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 39/229 (17%), Positives = 69/229 (30%), Gaps = 11/229 (4%)

Query: 405 TLDLRGNNLEGQIPDQI-CQLRRLGMMDLSHNRFNGSIPSCFTNM--LQWTIENVDLFGG 461
           T       L+  +P  I    +R+    L  NR +    + F     L     + ++   
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAASQRI---FLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 462 ELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVG 521
             +              +    L       F    ++    + +   +         +  
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 522 L---DLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS 578
           L    L  N L         DL  +  L L  N +S    R+F  L  ++ L L  NR++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 579 GQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDES-SYRGNLYLC 626
              P    +L  L    +  NNLS L  +        +      N ++C
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 32/204 (15%), Positives = 62/204 (30%), Gaps = 5/204 (2%)

Query: 375 NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH 434
            ++S   +   K  L+  +P  L +      L L  N L       +    RL  ++L  
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTL-DLEVCKRDMFT 493
                        +L     + +       +   L    +     + L  L +       
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 494 SPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL 553
             Q++ ++            +    +  L L+ N LT      +  L+ +  L L  N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 554 SGSIPRSFSNLQMIESLDLSNNRL 577
             +IP+ F    ++    L  N  
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 7/197 (3%)

Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP 252
               +  LP D+        +L +S N       +++     L  L+L +   ++     
Sbjct: 18  DKRNLTALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74

Query: 253 FLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLD 312
            L    +L       +N           L  +  L +  N+ +      L    +L +L 
Sbjct: 75  TLPVLGTLDL----SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 313 ISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTS 372
           +  N L    P  +     LE L ++NN L       L     L  L + EN L      
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190

Query: 373 SFNLSSLKHLYVQKNAL 389
            F    L   ++  N  
Sbjct: 191 FFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 36/181 (19%), Positives = 57/181 (31%), Gaps = 5/181 (2%)

Query: 259 SLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFL 318
               L LS+N  Y    +  +  T++  L L+  + +    +G L       L  +    
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ- 90

Query: 319 SGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSS 378
              +P        L +L +S N L       L     L+ L +  N L          + 
Sbjct: 91  --SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 379 LKHLYV-QKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRF 437
                    N L+     +L     L TL L+ N+L   IP        L    L  N +
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

Query: 438 N 438
            
Sbjct: 208 L 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 37/184 (20%), Positives = 58/184 (31%), Gaps = 7/184 (3%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
               +L +S N L     +T+   T L  L+L            +L          L  +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG-----TLDLS 85

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ 157
           +N L            L VL+++   L  +P   L             N +   P  +L 
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 158 NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDIS 217
              KLE L L NN+ T          + L  L    N+   T+P+        L    + 
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLH 203

Query: 218 NNHF 221
            N +
Sbjct: 204 GNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 42/238 (17%), Positives = 70/238 (29%), Gaps = 36/238 (15%)

Query: 33  CLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVL 92
             K  SHL+V +     L+ +L   +        L LS N       L++L  +++L  L
Sbjct: 6   VSKVASHLEV-NCDKRNLT-ALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQL 60

Query: 93  LLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFP 152
            L                                    L     L  L     +      
Sbjct: 61  NLDRAELT-----------------------------KLQVDGTLPVLGTLDLSHNQLQS 91

Query: 153 SWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLL 212
             +L        +   + +   +L L   +            N + TLP  + T   KL 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 213 VLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNF 270
            L ++NN+        +  ++ L  L L +N+        F  G   L F  L  N +
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF--GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLS 573
           S +   + ++     LT  +P ++   +    L+LS N L      +      +  L+L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 574 NNR 576
              
Sbjct: 64  RAE 66

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (135), Expect = 4e-09
 Identities = 58/448 (12%), Positives = 110/448 (24%), Gaps = 42/448 (9%)

Query: 21  LQVLDLSGSS------SNCLKYLSHLKVLDISHNQLSG----SLSSTITSLTSLEYLDLS 70
           +Q LD+          +  L  L   +V+ +    L+      +SS +    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 71  YNNF--EGPCPLSSL--ANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCS--- 123
            N     G   +         K++ L L +                 L  L+  + S   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 124 --------------LNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTN 169
                                 L          S   L     +        +    +  
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 170 NSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSV 229
                  +        L  L   S        +D+  I+     L              +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQME-FLY 288
            E+   ++   S+      +               L       +       L      L 
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 289 LENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPV 348
            E     G   E L   +  +      +F S    +       +    + +  +      
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 349 QLLNHRTLKLLSVSENYLSGSMTSSF-----NLSSLKHLYVQKNALSGPIPDMLFRS--- 400
                  L++L +++  +S S  SS         SL+ L +  N L       L  S   
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 401 --SKLMTLDLRGNNLEGQIPDQICQLRR 426
               L  L L       ++ D++  L +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 3e-08
 Identities = 53/443 (11%), Positives = 109/443 (24%), Gaps = 23/443 (5%)

Query: 186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEG----NIPSSVGEMKELIILHLS 241
           +  LD            ++  +L++  V+ + +         +I S++     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 242 KNNFSED----FSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGK 297
            N   +           T    +  L L +    G       +  +      E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 298 IEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLK 357
           + +  L      +  +        +     + S      +++         +L       
Sbjct: 124 LGDAGLQLL--CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 358 LLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI 417
             +       G   S   L +LK       + +      +  S   +     G+N  G +
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 418 PDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTY 477
                    L         +                        +            G  
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 478 YNSTLDLEVCKRDMFTSPQQVKVEFVT-KNRYELYNGSNLNYMVGLDLSCNELTGNVPSE 536
                 LE   +      +          +   +   +     + +  +  E  G     
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 537 IGDLQ---KIRGLNLSHNCLSG----SIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE-- 587
            G  Q    +R L L+   +S     S+  +      +  LDLSNN L      QL+E  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 588 ---LNFLSNFNVSYNNLSGLIPD 607
                 L    +     S  + D
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (122), Expect = 2e-07
 Identities = 55/468 (11%), Positives = 118/468 (25%), Gaps = 36/468 (7%)

Query: 136 DLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN 195
           D++ LD+    L     + +L    + +V+ L +   T                +A   +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT----------------EARCKD 46

Query: 196 FIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLT 255
               L          L  L++ +N         V +  +     + K +      T    
Sbjct: 47  ISSALRV-----NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

Query: 256 GCISLWFLDLSDNN-FYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDIS 314
           G +S     L      +           Q+    L + +   +  +    S      +  
Sbjct: 102 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161

Query: 315 HNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF 374
            + L           SN +I       L   +         LKL S      +       
Sbjct: 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 221

Query: 375 NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH 434
             S      +   +       M      L+    R   L         +        L  
Sbjct: 222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 281

Query: 435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTS 494
                 +      +       +     E        +    ++  +              
Sbjct: 282 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 341

Query: 495 PQQVKVEFVTK-----NRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGD----LQKIRG 545
             ++++                 G   + +  L L+  +++ +  S +         +R 
Sbjct: 342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 401

Query: 546 LNLSHNCLSGSIPRSFS-----NLQMIESLDLSNNRLSGQIPAQLIEL 588
           L+LS+NCL  +              ++E L L +   S ++  +L  L
Sbjct: 402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 6e-07
 Identities = 53/437 (12%), Positives = 113/437 (25%), Gaps = 13/437 (2%)

Query: 40  LKVLDISHNQLSGS-LSSTITSLTSLEYLDLSYNNF--EGPCPLSS-LANHSKLEVLLLS 95
           ++ LDI   +LS +  +  +  L   + + L            +SS L  +  L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 96  STNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWM 155
           S N +  V     L   Q    ++   SL            L     +L  L     S  
Sbjct: 64  S-NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 156 LQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTI-LKKLLVL 214
           L  +  L++L          L     ++  L          +     D   + +    + 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF 274
           +         +  S  +++ L +      + +       +    SL  L L  N      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 275 FSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEI 334
            ++           L                     L    +     +           +
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 335 LLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIP 394
           L  +       +    +   +      S      +         + +  ++   +     
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 395 DMLFRSSKLMTLDLRGNNLEGQ----IPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQ 450
            +    S L  L L   ++       +   +     L  +DLS+N    +        ++
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 451 ---WTIENVDLFGGELS 464
                +E + L+    S
Sbjct: 423 QPGCLLEQLVLYDIYWS 439

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 31/272 (11%), Positives = 90/272 (33%), Gaps = 17/272 (6%)

Query: 337 MSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSG-PIPD 395
           ++   L  ++  +LL+ + +       +++   +   F+   ++H+ +  + +    +  
Sbjct: 7   LTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 65

Query: 396 MLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIEN 455
           +L + SKL  L L G  L   I + + +   L  ++LS                   ++ 
Sbjct: 66  ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125

Query: 456 VDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSN 515
           ++L            +C+  T  +  + +      +         + + K+         
Sbjct: 126 LNLS-----------WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSH-NCLSGSIPRSFSNLQMIESLDLSN 574
            N +         L  +   E   L  ++ L+LS    +          +  +++L +  
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 575 NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP 606
               G +         L +  ++ ++ + +  
Sbjct: 235 IVPDGTLQL---LKEALPHLQINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 34/246 (13%), Positives = 68/246 (27%), Gaps = 8/246 (3%)

Query: 97  TNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWML 156
           T   L       L +  +         ++         + ++++DLS + +       +L
Sbjct: 8   TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67

Query: 157 QNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLV--- 213
              +KL+ L L     +  +     K+  L  L+ S  +                L    
Sbjct: 68  SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 127

Query: 214 ----LDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNN 269
                D +  H +  +      + +L +    KN    D ST        +         
Sbjct: 128 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187

Query: 270 FYGQFFSKDLNLTQMEFLYLEN-NKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGN 328
                F +   L  ++ L L        +    L     L  L +      G +      
Sbjct: 188 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA 247

Query: 329 FSNLEI 334
             +L+I
Sbjct: 248 LPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG-Q 580
           LDL+   L  +V   +     I       + +   +   FS  + ++ +DLSN+ +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 581 IPAQLIELNFLSNFNVSYNNLSGLIP 606
           +   L + + L N ++    LS  I 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIV 88

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 41/233 (17%), Positives = 73/233 (31%), Gaps = 15/233 (6%)

Query: 22  QVLDLSGS--SSNCLKYL--SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGP 77
           Q LDL+G     +    L    +       + +   L+    S   ++++DLS +  E  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS 61

Query: 78  CPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANC--------SLNVVPT 129
                L+  SKL+  L      +             L  L L+ C           +   
Sbjct: 62  TLHGILSQCSKLQN-LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 130 FLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL 189
             L + +L +        V    + + +  T+L +     N    +L     +   L HL
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 190 DASSNNFIGTLPQDMGTILKKLLVLDISN-NHFEGNIPSSVGEMKELIILHLS 241
           D S +  +          L  L  L +S            +GE+  L  L + 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.9 bits (117), Expect = 5e-07
 Identities = 42/322 (13%), Positives = 72/322 (22%), Gaps = 12/322 (3%)

Query: 114 LKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSW---MLQNNTKLEVLFLTNN 170
           LK+  +       V   LL    +K + LS N +  +   W    + +   LE+   ++ 
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 171 SFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVG 230
                          L                D          L    +         + 
Sbjct: 70  FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129

Query: 231 EMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLE 290
                           ++ +              +   N       K+   T      L 
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189

Query: 291 NNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL 350
             K              L +       L                 L        N+    
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 249

Query: 351 LNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS-----SKLMT 405
           LN     LLS           S      L+ L +Q N +       L          L+ 
Sbjct: 250 LNDC---LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 406 LDLRGNNLEGQIPDQICQLRRL 427
           L+L GN    +  D + ++R +
Sbjct: 307 LELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 39/334 (11%), Positives = 88/334 (26%), Gaps = 20/334 (5%)

Query: 39  HLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNF--EGPCPLSS-LANHSKLEVLLLS 95
            LK+  I+      S+ + +    S++ + LS N    E    LS  +A+   LE+   S
Sbjct: 9   SLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 96  STNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWM 155
                 +           L+ L        V  +        +   +   +         
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 156 LQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHH--LDASSNNFIGTLPQDMGTILKKLLV 213
           L NN                L +     +      +    N       ++     +   +
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 214 LDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQ 273
           L        G  P  +  +    + +  +    +     F     S   + L       +
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 274 FFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWM-----GN 328
               D  L+      + +           L +  L  L + +N +       +       
Sbjct: 248 LGLNDCLLSARGAAAVVDAF-------SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 329 FSNLEILLMSNNCL--EGNIPVQLLNHRTLKLLS 360
             +L  L ++ N    E ++  ++    + +   
Sbjct: 301 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 50/336 (14%), Positives = 95/336 (28%), Gaps = 28/336 (8%)

Query: 113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSF 172
           Q   LEL N  L+ +P    H   L+ L  S N+L  + P         L+ L + NN+ 
Sbjct: 39  QAHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPELP----QSLKSLLVDNNNL 90

Query: 173 TGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM 232
                        L  L         +  Q       +        +    ++       
Sbjct: 91  KA-----------LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139

Query: 233 KELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENN 292
             L  +    N   E      L    +++  + S         S +  +     L     
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199

Query: 293 KFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLN 352
             +      +     L +           +       ++L  L  S   L+ +  +    
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259

Query: 353 HRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNN 412
                 L       +   +      SL+ L V  N L   +P +     +L  L    N+
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP---PRLERLIASFNH 315

Query: 413 LEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNM 448
           L  ++P+    L++L    + +N      P    ++
Sbjct: 316 LA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 49/332 (14%), Positives = 90/332 (27%), Gaps = 31/332 (9%)

Query: 277 KDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILL 336
           +D    Q   L L N   S  + E   +   L  L  S N L+  +P    +  +L +  
Sbjct: 33  RDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDN 87

Query: 337 MSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSL-------KHLYVQKNAL 389
            +   L    P+      +   L       + S     ++ +            ++  A 
Sbjct: 88  NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 390 SGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNML 449
                + L     L  L     +           L    ++  ++             + 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 450 QWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYE 509
               +N  L                  Y     +L      +  S               
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 510 LYNGSNLNYMVG---------LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRS 560
             N S+               L++S N+L   +P+    L++   L  S N L+  +P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPEL 322

Query: 561 FSNLQMIESLDLSNNRLSG--QIPAQLIELNF 590
             NL+    L +  N L     IP  + +L  
Sbjct: 323 PQNLK---QLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 49/339 (14%), Positives = 90/339 (26%), Gaps = 28/339 (8%)

Query: 21  LQVLDLSGSSSNCL-KYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCP 79
              L+L+    + L +   HL+ L  S N L+  L     SL SL   + +        P
Sbjct: 40  AHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 98

Query: 80  LSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKY 139
           L      S                + E          L++ +   N +         L++
Sbjct: 99  LLEYLGVS--------------NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGT 199
           +    N L        L   T +     +            +     + L+         
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 200 LPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCIS 259
               +      L  L       E              +          +     L+    
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 260 LWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLS 319
             +   + +N              +E L + NNK   ++        +L +L  S N L+
Sbjct: 265 NLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA 317

Query: 320 GHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKL 358
             +P       NL+ L +  N L    P    +   L++
Sbjct: 318 -EVPELPQ---NLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 56/343 (16%), Positives = 95/343 (27%), Gaps = 30/343 (8%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
                L++++  LS SL         LE L  S N+      L+ L    +    LL   
Sbjct: 38  RQAHELELNNLGLS-SLPE---LPPHLESLVASCNS------LTELPELPQSLKSLLVDN 87

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ 157
           NN+     +       L      + +       L +   LK +D+  N+L          
Sbjct: 88  NNL-----KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 142

Query: 158 NNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDIS 217
                    L       NL      +   + L    +  +       G  + + L    +
Sbjct: 143 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN 202

Query: 218 NNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSK 277
                     +        +    +     D     L              N +      
Sbjct: 203 LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS-- 260

Query: 278 DLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLM 337
                ++       N  S +I         L +L++S+N L   +P        LE L+ 
Sbjct: 261 -----ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIA 311

Query: 338 SNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLK 380
           S N L   +P    N   LK L V  N L        ++  L+
Sbjct: 312 SFNHLA-EVPELPQN---LKQLHVEYNPLREFPDIPESVEDLR 350

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 33/220 (15%), Positives = 51/220 (23%), Gaps = 12/220 (5%)

Query: 393 IPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWT 452
           IP  L R+   + L      L             L  +++S N     I +   + L   
Sbjct: 23  IPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 453 IENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEV--------CKRDMFTSPQQVKVEFVT 504
            E        L    P  F  +       +                +      ++     
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 505 KNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNL 564
                          V L L+ N +           Q        +N L       F   
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 565 QMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGL 604
                LD+S  R+       L  L  L   +    NL  L
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 14/208 (6%), Positives = 42/208 (20%), Gaps = 8/208 (3%)

Query: 377 SSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR 436
            +   L      L             L  +++  N++   I   +               
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 437 FNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQ 496
            N    +         ++ + +    +   P +   +        +   +    +  +  
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 497 QVK--------VEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNL 548
                      +             +            N L                L++
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 549 SHNCLSGSIPRSFSNLQMIESLDLSNNR 576
           S   +         NL+ + +    N +
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 37/207 (17%), Positives = 66/207 (31%), Gaps = 1/207 (0%)

Query: 38  SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSST 97
            +   L     +L        +    LE +++S N+          +N  KL  + +   
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 98  NNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQ 157
           NN+L +  E F     L+ L ++N  +  +P         K L    +N+          
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 158 NNTKLEVLFLTNNSFTGNLRLPNTKHDFLH-HLDASSNNFIGTLPQDMGTILKKLLVLDI 216
                E + L  N            +      L+ S NN +  LP D+       ++LDI
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208

Query: 217 SNNHFEGNIPSSVGEMKELIILHLSKN 243
           S           +  +K+L        
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 5/228 (2%)

Query: 115 KVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTG 174
           +V       +  +P+ L    +   L   L  L              LE + ++ N    
Sbjct: 11  RVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLE 67

Query: 175 NLRLPNTKHDFLHH--LDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEM 232
            +      +    H      +NN +   P+    +     +L  +           +  +
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 233 KELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENN 292
           +++++      N        F+        L L+ N                E    +NN
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 293 KFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNN 340
                  +    ++    LDIS   +     + + N   L      N 
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 23/200 (11%), Positives = 65/200 (32%), Gaps = 12/200 (6%)

Query: 375 NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH 434
             +      ++K +++  +      S  +  +    ++++      I  L  +  + L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTS 494
           N+     P      L W   + +                      S     +   +    
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKV-----KDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 495 PQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLS 554
             Q++  ++  N+       +    +      +    ++   +  L K++ L LS N +S
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHIS 191

Query: 555 GSIPRSFSNLQMIESLDLSN 574
               R+ + L+ ++ L+L +
Sbjct: 192 D--LRALAGLKNLDVLELFS 209

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 66  YLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLN 125
            L L++ +    C L  L     +  L LS  +N L            L+VL+ ++ +L 
Sbjct: 2   VLHLAHKDLTVLCHLEQLLL---VTHLDLS--HNRLRALPPALAALRCLEVLQASDNALE 56

Query: 126 VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF 185
            V     +   L+ L L  N L        L +  +L +L L  NS      +     + 
Sbjct: 57  NVDGVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 186 LHHL 189
           L  +
Sbjct: 116 LPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 8e-04
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 213 VLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG 272
           VL +++      +   + ++  +  L LS N          L     L  L    ++   
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQA--SDNAL 55

Query: 273 QFFSKDLNLTQMEFLYLENNKF-SGKIEEGLLNSTKLYQLDISHNFLS---GHIPHWMGN 328
           +      NL +++ L L NN+       + L++  +L  L++  N L    G        
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 329 FSNLEILL 336
             ++  +L
Sbjct: 116 LPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 24/105 (22%)

Query: 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIP---------------------RS 560
           L L+  +LT  V   +  L  +  L+LSHN L    P                       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 561 FSNLQMIESLDLSNNRL-SGQIPAQLIELNFLSNFNVSYNNLSGL 604
            +NL  ++ L L NNRL        L+    L   N+  N+L   
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 10/120 (8%)

Query: 311 LDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPV--QLLNHRTLKLLSVSENYLSG 368
           L ++H  L+  +   +     +  L +S+N L    P    L     L+    +   + G
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 369 SMTSSFNLSSLKHLYVQKNAL-SGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRL 427
                     L+ L +  N L        L    +L+ L+L+GN+L         +L  +
Sbjct: 61  VANLPR----LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 521 GLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPR-SFSNLQMIESLDLSNNRLSG 579
           GL  + +    +    +   + +  L + +      +       L  + +L +  + L  
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 580 QIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCGPTI 630
             P        LS  N+S+N L  L     Q  +  E    GN   C   +
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 13/138 (9%), Positives = 36/138 (26%), Gaps = 1/138 (0%)

Query: 213 VLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG 272
            L  + +    +    +   + L  L++      +      L G   L  L +  +    
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 273 QFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNL 332
                     ++  L L  N       + +   +    +   +         W+  +   
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE 130

Query: 333 EILLMSNNCLEGNIPVQL 350
            +  +    L+ +    L
Sbjct: 131 GLGGVPEQKLQCHGQGPL 148

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 13/219 (5%)

Query: 375 NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH 434
            L++   +   K+ ++  +         + TL   G  +     + +  L  L  ++L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 435 NRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTS 494
           N+     P      +     + +      +I        +        D+          
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 495 PQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLS 554
              + +  +T         +          S      +  + + +L K+  L    N +S
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYL------SIGNAQVSDLTPLANLSKLTTLKADDNKIS 186

Query: 555 GSIPRSFSNLQMIESLDLSNNRLSGQIP-AQLIELNFLS 592
              P   ++L  +  + L NN++S   P A    L  ++
Sbjct: 187 DISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVT 223

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 33/233 (14%), Positives = 67/233 (28%), Gaps = 22/233 (9%)

Query: 35  KYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLL 94
             L++   +    + ++ ++  T   L  +  L            +  +   + L  L L
Sbjct: 16  PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLEL 70

Query: 95  SSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSW 154
                  L   +N     +                 +     L+ +              
Sbjct: 71  KDNQITDLAPLKNLTKITE-------LELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 155 MLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVL 214
            L   + L+VL+L  N  T    L    +     +  +  + +  L         KL  L
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS-----KLTTL 178

Query: 215 DISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSD 267
              +N      P  +  +  LI +HL  N  S       L    +L+ + L++
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 32  NCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEV 91
             L  LS L  L    N++S    S + SL +L  + L  N       +S LAN S L +
Sbjct: 167 TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISD---VSPLANTSNLFI 221

Query: 92  LLLS 95
           + L+
Sbjct: 222 VTLT 225

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 6/169 (3%)

Query: 62  TSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELAN 121
                L L+ N                L  L L       +        +   ++    N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 122 CSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNT 181
               +     L  + LK L+L  N +    P    ++   L  L L +N F  N  L   
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNCNCHLAWF 147

Query: 182 KHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVG 230
              +L     +        P      ++ + + D+ ++ F+ +  +S G
Sbjct: 148 AE-WLRKKSLNGGAARCGAPSK----VRDVQIKDLPHSEFKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 4/163 (2%)

Query: 282 TQMEFLYLENNKFSGKIEEGLL-NSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNN 340
                L L +N+      +GL      L +L++  N L+G  P+     S+++ L +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 341 CLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS 400
            ++       L    LK L++ +N +S  M  SF   +        +        + + +
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 401 SKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPS 443
             L    L G       P +   +R + + DL H+ F  S  +
Sbjct: 149 EWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSEN 188

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 8/64 (12%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 22 QVLDLSGSSSNCLKYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLS 81
          ++++ +   +N ++     + LD+   ++   + +   +L   + +D S N         
Sbjct: 6  ELIEQAAQYTNAVR----DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 82 SLAN 85
           L  
Sbjct: 61 LLRR 64

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 12/159 (7%)

Query: 37  LSHLKVLDISHNQLSG------SLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLE 90
              +   +    +L G       + +T+++L + ++L LS NN E    +SSL+    L 
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK---ISSLSGMENLR 73

Query: 91  VLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGD 150
           +L L         K EN             + +     + +    +L+ L +S N +   
Sbjct: 74  ILSLGRNLIK---KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 130

Query: 151 FPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHL 189
                L    KLE L L  N    + +  N   ++   +
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	700
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.67
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.62
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.84

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.3e-32  Score=277.31  Aligned_cols=258  Identities=33%  Similarity=0.557  Sum_probs=228.1

Q ss_pred             CCCcEEEcccCcCCC--CcchhhcCCCCCcEEEccc-CcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcE
Q 043317          306 TKLYQLDISHNFLSG--HIPHWMGNFSNLEILLMSN-NCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKH  381 (700)
Q Consensus       306 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~  381 (700)
                      .+++.|+|++|.+++  .+|..++++++|++|+|++ |+++|.+|..+.++++|++|++++|++.+..+..+ .+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            367888888888876  3678888888899999886 78888888888889999999999999888887777 7889999


Q ss_pred             EEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCC-CEEecCCCccCCCCCchhhhhhhhhhhhccccC
Q 043317          382 LYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRL-GMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFG  460 (700)
Q Consensus       382 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~  460 (700)
                      +++++|.+.+.+|..+..++.++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+            
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l------------  197 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------  197 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC------------
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc------------
Confidence            9999999998999999999999999999999999999999888876 889999999998777665542            


Q ss_pred             CCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCc
Q 043317          461 GELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDL  540 (700)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  540 (700)
                                                                               ....++++++...+.+|..++.+
T Consensus       198 ---------------------------------------------------------~~~~l~l~~~~~~~~~~~~~~~~  220 (313)
T d1ogqa_         198 ---------------------------------------------------------NLAFVDLSRNMLEGDASVLFGSD  220 (313)
T ss_dssp             ---------------------------------------------------------CCSEEECCSSEEEECCGGGCCTT
T ss_pred             ---------------------------------------------------------ccccccccccccccccccccccc
Confidence                                                                     23358999999999999999999


Q ss_pred             CCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCCCCCCCCCcCCCccC
Q 043317          541 QKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYR  620 (700)
Q Consensus       541 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~  620 (700)
                      ++++.+++++|.+++.+| .++.+++|+.|||++|+++|.+|..+.++++|++|||++|+|+|.+|..+.+..++..++.
T Consensus       221 ~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~  299 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA  299 (313)
T ss_dssp             SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred             cccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhC
Confidence            999999999999997665 6889999999999999999999999999999999999999999999998888899999999


Q ss_pred             CCcCCcCcCCCCCC
Q 043317          621 GNLYLCGPTINKSC  634 (700)
Q Consensus       621 gn~~lcg~~~~~~c  634 (700)
                      ||+.+||.|+. .|
T Consensus       300 ~N~~l~g~plp-~c  312 (313)
T d1ogqa_         300 NNKCLCGSPLP-AC  312 (313)
T ss_dssp             SSSEEESTTSS-CC
T ss_pred             CCccccCCCCC-CC
Confidence            99999998864 56

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.2e-30  Score=264.53  Aligned_cols=252  Identities=29%  Similarity=0.413  Sum_probs=221.1

Q ss_pred             CCCcEEEcccCcccc--cccccccCCCCCcEEEccc-CcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCE
Q 043317          282 TQMEFLYLENNKFSG--KIEEGLLNSTKLYQLDISH-NFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKL  358 (700)
Q Consensus       282 ~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  358 (700)
                      .+++.|+|++|.+++  .+|..++++++|++|+|++ |.++|.+|..++++++|++|+|++|++.+..+..+..+..|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            357888888888876  4678899999999999986 7888889999999999999999999999888888999999999


Q ss_pred             EEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCc-cEEECcCCcccccCChhhhccCCCCEEecCCCc
Q 043317          359 LSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKL-MTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNR  436 (700)
Q Consensus       359 L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  436 (700)
                      +++++|.+.+..+..+ .++.++++++++|.+++.+|..+..+..+ +.+++++|++++..|..+..+..+ .++++++.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            9999999988888777 89999999999999999999988888776 899999999999999888877654 79999999


Q ss_pred             cCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccc
Q 043317          437 FNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNL  516 (700)
Q Consensus       437 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  516 (700)
                      ..+.+|..+..                                                                    +
T Consensus       209 ~~~~~~~~~~~--------------------------------------------------------------------~  220 (313)
T d1ogqa_         209 LEGDASVLFGS--------------------------------------------------------------------D  220 (313)
T ss_dssp             EEECCGGGCCT--------------------------------------------------------------------T
T ss_pred             ccccccccccc--------------------------------------------------------------------c
Confidence            88777665443                                                                    3


Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  596 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  596 (700)
                      +.++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|+.|+++++|++|||++|+++|.+|. +.++++|+.+++
T Consensus       221 ~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l  298 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAY  298 (313)
T ss_dssp             SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGT
T ss_pred             cccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHh
Confidence            678889999999997765 688899999999999999999999999999999999999999999995 688999999999


Q ss_pred             cCCc-Cccc
Q 043317          597 SYNN-LSGL  604 (700)
Q Consensus       597 s~N~-l~~~  604 (700)
                      ++|+ ++|.
T Consensus       299 ~~N~~l~g~  307 (313)
T d1ogqa_         299 ANNKCLCGS  307 (313)
T ss_dssp             CSSSEEEST
T ss_pred             CCCccccCC
Confidence            9998 5654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2.4e-27  Score=247.81  Aligned_cols=340  Identities=24%  Similarity=0.247  Sum_probs=210.8

Q ss_pred             CCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEE
Q 043317          160 TKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILH  239 (700)
Q Consensus       160 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  239 (700)
                      .+|++|+++++.++..  ..+..+++|++|++++|+++ .+++ +. .+++|++|++++|++.+..  .++++++|+.|+
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~-l~-~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP-LK-NLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc-cc-CCccccccccccccccccc--cccccccccccc
Confidence            3444444444444321  12333444444444444444 2332 22 2556666666666665322  255666666666


Q ss_pred             ccCccCCCCCchHHHhcCCcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCC
Q 043317          240 LSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLS  319 (700)
Q Consensus       240 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~  319 (700)
                      ++++.+++..+.   .....+.......|.+......................     ....+...+.........|...
T Consensus       117 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  188 (384)
T d2omza2         117 LFNNQITDIDPL---KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT-----DLKPLANLTTLERLDISSNKVS  188 (384)
T ss_dssp             CCSSCCCCCGGG---TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC-----CCGGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccc---cccccccccccccccccccccccccccccccccccccc-----hhhhhccccccccccccccccc
Confidence            666666543222   22445555555555554333222222222111111111     1122334445555555555443


Q ss_pred             CCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhC
Q 043317          320 GHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFR  399 (700)
Q Consensus       320 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  399 (700)
                        ....+..+++++.+++++|.+++..|  +..+++|+.|++++|.++... ....+++|+.+++++|++++..+  +..
T Consensus       189 --~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~  261 (384)
T d2omza2         189 --DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSG  261 (384)
T ss_dssp             --CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             --cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc--ccc
Confidence              23446677778888888887775544  345677888888888777642 22267788888888888875433  667


Q ss_pred             CCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccc
Q 043317          400 SSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYN  479 (700)
Q Consensus       400 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (700)
                      +++|++|++++|++++..  .+..++.++.+++++|++.+.  ..+                                  
T Consensus       262 ~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~----------------------------------  303 (384)
T d2omza2         262 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPI----------------------------------  303 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGG----------------------------------
T ss_pred             cccCCEeeccCcccCCCC--ccccccccccccccccccccc--ccc----------------------------------
Confidence            788888888888887433  366788888888888887631  111                                  


Q ss_pred             cccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCc
Q 043317          480 STLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPR  559 (700)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  559 (700)
                                                        ..++.++.|++++|++++..  .+..+++|++|++++|++++ ++ 
T Consensus       304 ----------------------------------~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-  345 (384)
T d2omza2         304 ----------------------------------SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-  345 (384)
T ss_dssp             ----------------------------------GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-
T ss_pred             ----------------------------------chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-
Confidence                                              12367788999999998653  38889999999999999984 44 


Q ss_pred             ccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCC
Q 043317          560 SFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYN  599 (700)
Q Consensus       560 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  599 (700)
                      .++++++|++||+++|++++.+|  +.++++|+.|+|++|
T Consensus       346 ~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         346 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            68999999999999999997765  889999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.5e-26  Score=241.71  Aligned_cols=343  Identities=22%  Similarity=0.240  Sum_probs=212.2

Q ss_pred             cCCCCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcc
Q 043317           35 KYLSHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQL  114 (700)
Q Consensus        35 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  114 (700)
                      ..+.+|++|+++++.|+..  +.++.+++|++|++++|++++ ++  .++++++|++|++++|.                
T Consensus        41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~--~l~~L~~L~~L~L~~n~----------------   99 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT--PLKNLTKLVDILMNNNQ----------------   99 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSC----------------
T ss_pred             HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc--cccCCcccccccccccc----------------
Confidence            3456677777777777643  346667777777777777763 22  25556666666665554                


Q ss_pred             cEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCC
Q 043317          115 KVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSN  194 (700)
Q Consensus       115 ~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  194 (700)
                               +..++. +..+++|+.|+++++.+++ ++..  .....+.......|.+......................
T Consensus       100 ---------i~~i~~-l~~l~~L~~L~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  166 (384)
T d2omza2         100 ---------IADITP-LANLTNLTGLTLFNNQITD-IDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVT  166 (384)
T ss_dssp             ---------CCCCGG-GTTCTTCCEEECCSSCCCC-CGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCC
T ss_pred             ---------cccccc-ccccccccccccccccccc-cccc--cccccccccccccccccccccccccccccccccccccc
Confidence                     333322 3344444455544444442 2211  12334444444444333222211111111111111111


Q ss_pred             cCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccccc
Q 043317          195 NFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQF  274 (700)
Q Consensus       195 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  274 (700)
                      ..     ..+. ..+.........|...  ....+..+++++.+++++|.+++..+.   ..+++|++|++++|.++.. 
T Consensus       167 ~~-----~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~~---~~~~~L~~L~l~~n~l~~~-  234 (384)
T d2omza2         167 DL-----KPLA-NLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKDI-  234 (384)
T ss_dssp             CC-----GGGT-TCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGGG---GGCTTCCEEECCSSCCCCC-
T ss_pred             hh-----hhhc-cccccccccccccccc--cccccccccccceeeccCCccCCCCcc---cccCCCCEEECCCCCCCCc-
Confidence            11     1111 1233444444444433  344566677777777777777664432   3467778888888877653 


Q ss_pred             ccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCC
Q 043317          275 FSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHR  354 (700)
Q Consensus       275 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  354 (700)
                       ..+..+++|+.+++++|.+++..+  +..+++|++|++++|++++..  .+..++.++.+++++|.+.+.  ..+..++
T Consensus       235 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~  307 (384)
T d2omza2         235 -GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLK  307 (384)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCT
T ss_pred             -chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhc
Confidence             345677888888888888875433  667788888888888887543  367788888888888888742  3477788


Q ss_pred             CCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCC
Q 043317          355 TLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSH  434 (700)
Q Consensus       355 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  434 (700)
                      +++.|++++|++++..+ ...+++|++|++++|++++ ++ .+..+++|++|++++|++++..|  +.++++|+.|+|++
T Consensus       308 ~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~  382 (384)
T d2omza2         308 NLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND  382 (384)
T ss_dssp             TCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCC
T ss_pred             ccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCC
Confidence            88889998888887643 2368899999999998874 44 57889999999999999986544  78899999999988


Q ss_pred             C
Q 043317          435 N  435 (700)
Q Consensus       435 N  435 (700)
                      |
T Consensus       383 N  383 (384)
T d2omza2         383 Q  383 (384)
T ss_dssp             E
T ss_pred             C
Confidence            7

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.8e-24  Score=217.81  Aligned_cols=85  Identities=21%  Similarity=0.284  Sum_probs=57.1

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCccc------ccCCCC
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQ------LIELNF  590 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~  590 (700)
                      +.++.|++++|.+++..+..+.++++|++|+|++|+|+ .+|..|.++++|+.|+|++|+|+...+..      +..+.+
T Consensus       195 ~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~  273 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS  273 (305)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCC
Confidence            44555666666666666666777777777777777776 45666777777777777777776543333      334667


Q ss_pred             CCeEeccCCcCc
Q 043317          591 LSNFNVSYNNLS  602 (700)
Q Consensus       591 L~~L~ls~N~l~  602 (700)
                      |+.|++++|+++
T Consensus       274 L~~L~L~~N~~~  285 (305)
T d1xkua_         274 YSGVSLFSNPVQ  285 (305)
T ss_dssp             CSEEECCSSSSC
T ss_pred             CCEEECCCCcCc
Confidence            778888888775

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.2e-24  Score=219.14  Aligned_cols=248  Identities=23%  Similarity=0.262  Sum_probs=165.6

Q ss_pred             cccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCC
Q 043317          113 QLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDAS  192 (700)
Q Consensus       113 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  192 (700)
                      ..+.++.++.+++++|..+.  +++++|+|++|+++ .+|...+.++++|++|++++|.+....+..+..++.|++|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            56778888888888887664  57888899888887 7776556688888888888888887777778888888888888


Q ss_pred             CCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCC-CchHHHhcCCcCcEEEcCCcccc
Q 043317          193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSED-FSTPFLTGCISLWFLDLSDNNFY  271 (700)
Q Consensus       193 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~  271 (700)
                      +|++. .+|...   ...++.|++.+|.+.+..+..+.....++.++...|..... .....+..+++|+.+++++|.+.
T Consensus        88 ~n~l~-~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            88876 566544   34677888888877765555566666777777776654321 11122345666666666666664


Q ss_pred             cccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhcc
Q 043317          272 GQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLL  351 (700)
Q Consensus       272 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  351 (700)
                      .... .  .+++|+.|++++|..++..+..+..++.++.|++++|.+++..+.++.++++|++|+|++|+++ .+|.++.
T Consensus       164 ~l~~-~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~  239 (305)
T d1xkua_         164 TIPQ-G--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  239 (305)
T ss_dssp             SCCS-S--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             ccCc-c--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccc
Confidence            4321 1  2455666666666666666666666666666666666666555566666666666666666665 3455566


Q ss_pred             CCCCCCEEEccCccCcccCC
Q 043317          352 NHRTLKLLSVSENYLSGSMT  371 (700)
Q Consensus       352 ~~~~L~~L~l~~n~l~~~~~  371 (700)
                      .+++|++|++++|+|+.+..
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCT
T ss_pred             cccCCCEEECCCCccCccCh
Confidence            66666666666666655443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.6e-24  Score=213.00  Aligned_cols=225  Identities=20%  Similarity=0.215  Sum_probs=171.0

Q ss_pred             EEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEcc-CCc
Q 043317          311 LDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQ-KNA  388 (700)
Q Consensus       311 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~-~n~  388 (700)
                      ++.+++.++ .+|..+.  +++++|+|++|+|++..+..|.+++.|++|++++|.+....+..+ .++.++.++.. .+.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            444555555 3444332  356667777777765555566677777777777777776666666 56677777654 455


Q ss_pred             CccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCC
Q 043317          389 LSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPP  468 (700)
Q Consensus       389 l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  468 (700)
                      ++...+..+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..                     
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~---------------------  151 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD---------------------  151 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc---------------------
Confidence            66566777888888888888888887666777778888888888888887554444433                     


Q ss_pred             CcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeC
Q 043317          469 LGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNL  548 (700)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  548 (700)
                                                                     ++.|+.|++++|++++..+..|.++++|+.+++
T Consensus       152 -----------------------------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         152 -----------------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             -----------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -----------------------------------------------ccchhhcccccCcccccchhhhccccccchhhh
Confidence                                                           256778899999998888888999999999999


Q ss_pred             CCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcccCC
Q 043317          549 SHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIP  606 (700)
Q Consensus       549 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  606 (700)
                      ++|++++..|..|+++++|++||+++|++++..|..|..+++|++|++++|++.+..+
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            9999998889999999999999999999998888899999999999999999986543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.5e-24  Score=211.66  Aligned_cols=254  Identities=18%  Similarity=0.131  Sum_probs=166.5

Q ss_pred             EEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcC-
Q 043317          188 HLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLS-  266 (700)
Q Consensus       188 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~-  266 (700)
                      .++.++++++ ++|..+.   +.+++|+|++|+++...+.+|.++++|++|++++|++.+..+. .+..+..++.++.. 
T Consensus        15 ~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~-~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccc-ccccccccccccccc
Confidence            3455666655 6676543   4678888888888866666788888888888888887654443 33456677776653 


Q ss_pred             CcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccc
Q 043317          267 DNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI  346 (700)
Q Consensus       267 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  346 (700)
                      .+.+....+..+.++++|++|++++|.+....+..+...++|+.+++++|++++..+.+|..+++|++|++++|++++..
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            44555555666777777777777777776655666666777777777777777666666777777777777777777666


Q ss_pred             hhhccCCCCCCEEEccCccCcccCCCcc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccC
Q 043317          347 PVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLR  425 (700)
Q Consensus       347 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~  425 (700)
                      +..|.++++|+.+++++|++++..+..+ .+++|++|++++|++.+..+.+|..+++|++|++++|++.+.-+. ..-..
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~  248 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWA  248 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHH
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHH
Confidence            6667777777777777777777666666 667777777777777766666677777777777777776643221 11112


Q ss_pred             CCCEEecCCCccCCCCCchhhh
Q 043317          426 RLGMMDLSHNRFNGSIPSCFTN  447 (700)
Q Consensus       426 ~L~~L~Ls~N~l~~~~p~~~~~  447 (700)
                      .++.+....+.+....|..+.+
T Consensus       249 ~l~~~~~~~~~~~C~~p~~l~g  270 (284)
T d1ozna_         249 WLQKFRGSSSEVPCSLPQRLAG  270 (284)
T ss_dssp             HHHHCCSEECCCBEEESGGGTT
T ss_pred             HHHhCcCCCCceEeCCchHHcC
Confidence            2334444445555555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.7e-23  Score=201.35  Aligned_cols=201  Identities=23%  Similarity=0.217  Sum_probs=130.2

Q ss_pred             CCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEc
Q 043317          305 STKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYV  384 (700)
Q Consensus       305 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l  384 (700)
                      ...+.++|.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|++++|+++..               
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l---------------   70 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---------------   70 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE---------------
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc---------------
Confidence            344455556655555 3343332  3455555555555544444455555555555555544432               


Q ss_pred             cCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCcc
Q 043317          385 QKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS  464 (700)
Q Consensus       385 ~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  464 (700)
                               | .+..+++|++|++++|+++ ..+..+..+++|+.|++++|++.+..+..+..                 
T Consensus        71 ---------~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----------------  122 (266)
T d1p9ag_          71 ---------Q-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-----------------  122 (266)
T ss_dssp             ---------E-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-----------------
T ss_pred             ---------c-ccccccccccccccccccc-ccccccccccccccccccccccceeecccccc-----------------
Confidence                     2 1234556666666666665 33445666667777777776665433322221                 


Q ss_pred             CCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCc
Q 043317          465 IFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR  544 (700)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  544 (700)
                                                                         +..++.|++++|.+++..+..+..+++++
T Consensus       123 ---------------------------------------------------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_         123 ---------------------------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             ---------------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ---------------------------------------------------ccccccccccccccceeccccccccccch
Confidence                                                               35566777888888777777778888888


Q ss_pred             EEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEeccCCcCcc
Q 043317          545 GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSG  603 (700)
Q Consensus       545 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  603 (700)
                      .|++++|++++..+..|+.+++|++|||++|+|+ .+|..+..+++|+.|+|++|++.+
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             hcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            8888888888878888888888999999999888 677778888889999999998874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.7e-22  Score=194.58  Aligned_cols=202  Identities=20%  Similarity=0.160  Sum_probs=144.1

Q ss_pred             CCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEE
Q 043317          280 NLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLL  359 (700)
Q Consensus       280 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  359 (700)
                      +...+.+++.+++.++. +|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++. ++. +..+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~-~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc-cccccccccc
Confidence            45667788999999994 676553  689999999999997777889999999999999999984 442 4556666666


Q ss_pred             EccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCC
Q 043317          360 SVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNG  439 (700)
Q Consensus       360 ~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  439 (700)
                      ++++|++++..                        ..+..+++|++|++++|.+.+..+..+..+.++++|++++|.+.+
T Consensus        83 ~Ls~N~l~~~~------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          83 DLSHNQLQSLP------------------------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT  138 (266)
T ss_dssp             ECCSSCCSSCC------------------------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred             ccccccccccc------------------------cccccccccccccccccccceeeccccccccccccccccccccce
Confidence            66666655433                        334444555555555555554455555566666666666666653


Q ss_pred             CCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCcccccc
Q 043317          440 SIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYM  519 (700)
Q Consensus       440 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L  519 (700)
                      ..+..+..                                                                    ++.+
T Consensus       139 l~~~~~~~--------------------------------------------------------------------l~~l  150 (266)
T d1p9ag_         139 LPPGLLTP--------------------------------------------------------------------TPKL  150 (266)
T ss_dssp             CCTTTTTT--------------------------------------------------------------------CTTC
T ss_pred             eccccccc--------------------------------------------------------------------cccc
Confidence            33322222                                                                    2556


Q ss_pred             ceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcc
Q 043317          520 VGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG  579 (700)
Q Consensus       520 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  579 (700)
                      +.+++++|++++..+..|+.+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|++..
T Consensus       151 ~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            66777777777777777888888888888888888 677777788889999999888763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=9.4e-18  Score=171.83  Aligned_cols=199  Identities=24%  Similarity=0.248  Sum_probs=124.9

Q ss_pred             CCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCC-CcccE
Q 043317           38 SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPT-FQLKV  116 (700)
Q Consensus        38 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~  116 (700)
                      .++++|||+++.++. +|+   ..++|++|++++|+|+ .+|.    ...+|+.|++++|... .++     .+ +.|++
T Consensus        38 ~~l~~LdLs~~~L~~-lp~---~~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~-~l~-----~lp~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLK-ALS-----DLPPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCS-CCC-----SCCTTCCE
T ss_pred             cCCCEEEeCCCCCCC-CCC---CCCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccc-hhh-----hhcccccc
Confidence            368889999998884 564   3578899999999988 5662    2467888888876543 222     22 35888


Q ss_pred             EEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcC
Q 043317          117 LELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNF  196 (700)
Q Consensus       117 L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  196 (700)
                      |++++|.+..+|. +..+++|++|+++++.+. ..+.    ....+..+.+..+....  ...+..++.++.+++++|..
T Consensus       103 L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~-~~~~----~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         103 LGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             EECCSSCCSSCCC-CTTCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccc-hhhhccceeecccccccc-cccc----ccccccchhhccccccc--cccccccccceecccccccc
Confidence            8888888888875 467888888888888876 4443    34567777776655432  34456667777777777765


Q ss_pred             ccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCcccc
Q 043317          197 IGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFY  271 (700)
Q Consensus       197 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  271 (700)
                      . .++..    ....+.+....+.+. .++ .+..++.|+.+++++|.... .+.    ...++..+.+.++.+.
T Consensus       175 ~-~~~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~----~~~~l~~~~~~~~~~~  237 (353)
T d1jl5a_         175 K-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLT  237 (353)
T ss_dssp             S-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCS
T ss_pred             c-ccccc----ccccccccccccccc-ccc-cccccccccccccccccccc-ccc----cccccccccccccccc
Confidence            4 22221    123455555555444 222 34566677777777665543 221    2345555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=5.8e-18  Score=173.43  Aligned_cols=68  Identities=22%  Similarity=0.345  Sum_probs=44.9

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEec
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNV  596 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  596 (700)
                      ++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|++|++++|+++ .+|...   ..|+.|.+
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~  351 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRM  351 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeEC
Confidence            56777777777777 45543   467778888888887 45543   456888888888877 455432   24555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.6e-21  Score=202.82  Aligned_cols=87  Identities=24%  Similarity=0.214  Sum_probs=58.3

Q ss_pred             cccceEECCCCcCccc----CCcccc-CcCCCcEEeCCCccCccc----cCcccccccCCCEEeCCCCcCcccCcccc--
Q 043317          517 NYMVGLDLSCNELTGN----VPSEIG-DLQKIRGLNLSHNCLSGS----IPRSFSNLQMIESLDLSNNRLSGQIPAQL--  585 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l--  585 (700)
                      ++|++|||++|.+++.    ++..+. ..+.|++|+|++|+|+..    +++.+..+++|++|||++|+++......+  
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~  419 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE  419 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHH
Confidence            5678888888888643    223332 356688888888888742    44556677888888888888875433333  


Q ss_pred             --c-CCCCCCeEeccCCcCcc
Q 043317          586 --I-ELNFLSNFNVSYNNLSG  603 (700)
Q Consensus       586 --~-~l~~L~~L~ls~N~l~~  603 (700)
                        . ....|+.|++++|++..
T Consensus       420 ~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         420 SVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHTSTTCCCCEEECTTCCCCH
T ss_pred             HHHhCCCccCEEECCCCCCCH
Confidence              2 33468888888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.7e-21  Score=205.23  Aligned_cols=389  Identities=19%  Similarity=0.129  Sum_probs=201.1

Q ss_pred             cccEEEeeCCCCCC--cChhhcCCCCCCEEEccCCCCCccCch---HHhhcCCCCCEEEccCCcCccc----CCCCCC-C
Q 043317          113 QLKVLELANCSLNV--VPTFLLHQYDLKYLDLSLNNLVGDFPS---WMLQNNTKLEVLFLTNNSFTGN----LRLPNT-K  182 (700)
Q Consensus       113 ~L~~L~L~~n~l~~--~p~~l~~~~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~----~~~~~~-~  182 (700)
                      +|++||+++++++.  +...+..++++++|+|++|.++..-..   ..+..+++|++|++++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            57888888888854  234455677888888888877632111   1234677777777777776421    111111 2


Q ss_pred             CCCccEEeCCCCcCccccChhHHhhccCCcEEEccCCcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhc----CC
Q 043317          183 HDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTG----CI  258 (700)
Q Consensus       183 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~  258 (700)
                      ..+|++|++++|+++...-..+                     +..+..+++|++|++++|.+.+.....+...    ..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l---------------------~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~  141 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVL---------------------SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  141 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHH---------------------HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCCCCEEECCCCCccccccccc---------------------cchhhccccccccccccccchhhhhhhhhhccccccc
Confidence            2345566666555542211111                     2223333444444444444332111111100    01


Q ss_pred             cCcEEEcCCccccccc----ccccCCCCCCcEEEcccCcccccc----cccc-cCCCCCcEEEcccCcCCCC----cchh
Q 043317          259 SLWFLDLSDNNFYGQF----FSKDLNLTQMEFLYLENNKFSGKI----EEGL-LNSTKLYQLDISHNFLSGH----IPHW  325 (700)
Q Consensus       259 ~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~-~~~~~L~~L~Ls~n~l~~~----~~~~  325 (700)
                      ...........+....    ...+.....++.+.++++......    ...+ ........+++..+.+...    ....
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (460)
T d1z7xw1         142 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  221 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             ccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccc
Confidence            1122222222111100    011122344555555555433210    0011 1123445566665544322    1122


Q ss_pred             hcCCCCCcEEEcccCcCcc-----cchhhccCCCCCCEEEccCccCcccCCCc----c-CCCCCcEEEccCCcCccCcch
Q 043317          326 MGNFSNLEILLMSNNCLEG-----NIPVQLLNHRTLKLLSVSENYLSGSMTSS----F-NLSSLKHLYVQKNALSGPIPD  395 (700)
Q Consensus       326 ~~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~-~l~~L~~L~l~~n~l~~~~~~  395 (700)
                      +...+.++.+++++|.+..     ..+........++.+++++|.+.......    + ..+.++.+++++|.+++....
T Consensus       222 l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             ccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445666777777666532     12233344566777777777665432211    1 356777788888777543222


Q ss_pred             hh-----hCCCCccEEECcCCcccccCCh----hhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCC
Q 043317          396 ML-----FRSSKLMTLDLRGNNLEGQIPD----QICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIF  466 (700)
Q Consensus       396 ~~-----~~~~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  466 (700)
                      .+     .....|+.+++++|.++.....    .+...++|++|+|++|++.......+....                 
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l-----------------  364 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL-----------------  364 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH-----------------
T ss_pred             hhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhh-----------------
Confidence            21     2245788888888887654333    334556888888888887532111111100                 


Q ss_pred             CCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCccc----CCccccCcCC
Q 043317          467 PPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGN----VPSEIGDLQK  542 (700)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~  542 (700)
                                                                    ....+.|+.|+|++|.++..    ++..+..+++
T Consensus       365 ----------------------------------------------~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  398 (460)
T d1z7xw1         365 ----------------------------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  398 (460)
T ss_dssp             ----------------------------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             ----------------------------------------------hcccCCCCEEECCCCCCChHHHHHHHHHHhcCCC
Confidence                                                          01125678899999988742    3455667789


Q ss_pred             CcEEeCCCccCccccCccc----c-cccCCCEEeCCCCcCcccCcccc
Q 043317          543 IRGLNLSHNCLSGSIPRSF----S-NLQMIESLDLSNNRLSGQIPAQL  585 (700)
Q Consensus       543 L~~L~Ls~N~l~~~~p~~~----~-~l~~L~~L~Ls~N~l~~~~p~~l  585 (700)
                      |++|+|++|+|+......|    . +.+.|+.|++++|.+....+..+
T Consensus       399 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             CCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence            9999999999875433333    2 33479999999999886555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1e-17  Score=159.70  Aligned_cols=189  Identities=19%  Similarity=0.266  Sum_probs=114.2

Q ss_pred             cCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEE
Q 043317          327 GNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTL  406 (700)
Q Consensus       327 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  406 (700)
                      ..+.+|++|++.+|.++. + ..+..+++|++|++++|.+++..+ ...+++|+.+++++|.++. ++ .+..+++|+.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~-i~-~l~~l~~L~~l  112 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL  112 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred             HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccc-cc-ccccccccccc
Confidence            334455555555555542 2 234455555555555555544332 1245566666666665542 22 35566666666


Q ss_pred             ECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCccccccccccccccccc
Q 043317          407 DLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEV  486 (700)
Q Consensus       407 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (700)
                      +++++...+.  ..+...+.++.+.++++.+....+  +                                         
T Consensus       113 ~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~-----------------------------------------  147 (227)
T d1h6ua2         113 DLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--L-----------------------------------------  147 (227)
T ss_dssp             ECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--G-----------------------------------------
T ss_pred             cccccccccc--chhccccchhhhhchhhhhchhhh--h-----------------------------------------
Confidence            6666665532  234555666666666665542111  1                                         


Q ss_pred             ccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccC
Q 043317          487 CKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM  566 (700)
Q Consensus       487 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  566 (700)
                                                 ...+.|+.|++++|.+++..  .++++++|++|+|++|++++ ++ .++++++
T Consensus       148 ---------------------------~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~  196 (227)
T d1h6ua2         148 ---------------------------AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPN  196 (227)
T ss_dssp             ---------------------------GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTT
T ss_pred             ---------------------------ccccccccccccccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCC
Confidence                                       11356677778877776332  37788888888888888875 33 3788888


Q ss_pred             CCEEeCCCCcCcccCcccccCCCCCCeEeccC
Q 043317          567 IESLDLSNNRLSGQIPAQLIELNFLSNFNVSY  598 (700)
Q Consensus       567 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  598 (700)
                      |++|+|++|++++..|  ++++++|++|++++
T Consensus       197 L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            8888888888886543  78888888888863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.3e-18  Score=165.19  Aligned_cols=135  Identities=16%  Similarity=0.181  Sum_probs=82.6

Q ss_pred             CCCCEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEE
Q 043317           38 SHLKVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVL  117 (700)
Q Consensus        38 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L  117 (700)
                      +++++|+|++|+|+...+.+|.++++|++|++++|.+...++...|.++++++++.+..++.....+...|..+++|+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            46777777777777655566777777777777777776555656677777777777766555555666566677777777


Q ss_pred             EeeCCCCCCcCh--hhcCCCCCCEEEccCCCCCccCchHHhhcCC-CCCEEEccCCcCc
Q 043317          118 ELANCSLNVVPT--FLLHQYDLKYLDLSLNNLVGDFPSWMLQNNT-KLEVLFLTNNSFT  173 (700)
Q Consensus       118 ~L~~n~l~~~p~--~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~  173 (700)
                      ++++|++...+.  .+..+..+..+..+++.+. .++...+..++ .++.|++++|+++
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~-~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccchhhhcccccccccccccccccccccccccc-cccccccccccccceeeeccccccc
Confidence            777777654443  2223344444455555554 34333332332 4555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.7e-17  Score=158.22  Aligned_cols=189  Identities=20%  Similarity=0.239  Sum_probs=115.7

Q ss_pred             cCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEE
Q 043317          303 LNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHL  382 (700)
Q Consensus       303 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L  382 (700)
                      ..+.+|+.|++.+|.++.. + .+..+++|++|++++|.+++..+  +..+++++.+++++|.++.. +....+++|+.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i-~~l~~l~~L~~l  112 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-SAIAGLQSIKTL  112 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEE
T ss_pred             HHcCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc-cccccccccccc
Confidence            3445555555555555532 2 35555666666666665553322  55556666666666655532 222256666677


Q ss_pred             EccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhccccCCC
Q 043317          383 YVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGE  462 (700)
Q Consensus       383 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  462 (700)
                      +++++...+.  ..+...+.++.+.++++.+...  ..+..+++|+.|++++|.+.+..+  +.                
T Consensus       113 ~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~--l~----------------  170 (227)
T d1h6ua2         113 DLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LA----------------  170 (227)
T ss_dssp             ECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCGG--GT----------------
T ss_pred             cccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccchh--hc----------------
Confidence            7766666532  2245566777777777776532  235667777777777776652111  11                


Q ss_pred             ccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCccccCcCC
Q 043317          463 LSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQK  542 (700)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  542 (700)
                                                                          .+++|+.|||++|++++ ++ .++++++
T Consensus       171 ----------------------------------------------------~l~~L~~L~Ls~n~l~~-l~-~l~~l~~  196 (227)
T d1h6ua2         171 ----------------------------------------------------NLSKLTTLKADDNKISD-IS-PLASLPN  196 (227)
T ss_dssp             ----------------------------------------------------TCTTCCEEECCSSCCCC-CG-GGGGCTT
T ss_pred             ----------------------------------------------------ccccceecccCCCccCC-Ch-hhcCCCC
Confidence                                                                23667778888888774 33 3778888


Q ss_pred             CcEEeCCCccCccccCcccccccCCCEEeCCC
Q 043317          543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSN  574 (700)
Q Consensus       543 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  574 (700)
                      |++|+|++|++++..|  ++++++|+.|++++
T Consensus       197 L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            8888888888885433  78888888888864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.3e-18  Score=164.39  Aligned_cols=215  Identities=17%  Similarity=0.103  Sum_probs=116.2

Q ss_pred             ccEEEeeCCCCCCcChhhcCCCCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCC
Q 043317          114 LKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASS  193 (700)
Q Consensus       114 L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  193 (700)
                      .+.++.++.+++.+|..+.  +++++|++++|+++ .+|...|.++++|++|++++|.+..                   
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~-------------------   67 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE-------------------   67 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCC-------------------
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccc-------------------
Confidence            3577777777777776553  46777777777776 6666555567777777776666543                   


Q ss_pred             CcCccccChhHHhhccCCcEEEccC-CcCCccCCccccCCCCCcEEEccCccCCCCCchHHHhcCCcCcEEEcCCccccc
Q 043317          194 NNFIGTLPQDMGTILKKLLVLDISN-NHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYG  272 (700)
Q Consensus       194 n~l~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  272 (700)
                           .++...+..++.++++.+.. |.+....+..|.++++|+.+++++|.+....+..+...+..+..+...++.+..
T Consensus        68 -----~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~  142 (242)
T d1xwdc1          68 -----VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT  142 (242)
T ss_dssp             -----EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCE
T ss_pred             -----eeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccc
Confidence                 23333333355566665543 455555556666777777777777766543333333334444444455555544


Q ss_pred             ccccccCCCC-CCcEEEcccCcccccccccccCCCCCcEE-EcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhc
Q 043317          273 QFFSKDLNLT-QMEFLYLENNKFSGKIEEGLLNSTKLYQL-DISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQL  350 (700)
Q Consensus       273 ~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  350 (700)
                      ..+..+..++ .++.|++++|+++...+..+ ...+++++ ++++|+++...+..|.++++|++|++++|+++...+..|
T Consensus       143 i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~  221 (242)
T d1xwdc1         143 IERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL  221 (242)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSC
T ss_pred             ccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHH
Confidence            4444444432 45556666666554333322 23333333 345555554334445555555555555555553333333


Q ss_pred             cCCCCC
Q 043317          351 LNHRTL  356 (700)
Q Consensus       351 ~~~~~L  356 (700)
                      .++++|
T Consensus       222 ~~l~~L  227 (242)
T d1xwdc1         222 ENLKKL  227 (242)
T ss_dssp             TTCCEE
T ss_pred             cCCccc
Confidence            333333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=9e-18  Score=155.29  Aligned_cols=62  Identities=27%  Similarity=0.394  Sum_probs=31.7

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCc
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLS  578 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  578 (700)
                      +.|+.|+|++|++++..|..|.++++|++|+|++|+|++..|++|..+++|++|+|++|.+.
T Consensus        78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            33444555555555444445555555555555555555444455555555555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.1e-16  Score=150.22  Aligned_cols=164  Identities=21%  Similarity=0.297  Sum_probs=100.8

Q ss_pred             CCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecC
Q 043317          354 RTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLS  433 (700)
Q Consensus       354 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls  433 (700)
                      .+|+.|++++|.++.... .-.+++|++|++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|+.|+++
T Consensus        46 ~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             cCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            345555555555544321 124566666666666665432  24556667777777776663 33 46666777777777


Q ss_pred             CCccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccC
Q 043317          434 HNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNG  513 (700)
Q Consensus       434 ~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  513 (700)
                      +|.+.. ++ .+.                                                                   
T Consensus       121 ~~~~~~-~~-~l~-------------------------------------------------------------------  131 (210)
T d1h6ta2         121 HNGISD-IN-GLV-------------------------------------------------------------------  131 (210)
T ss_dssp             TSCCCC-CG-GGG-------------------------------------------------------------------
T ss_pred             cccccc-cc-ccc-------------------------------------------------------------------
Confidence            766542 11 111                                                                   


Q ss_pred             ccccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCe
Q 043317          514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSN  593 (700)
Q Consensus       514 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  593 (700)
                       .++.++.+++++|.+++  +..+..+++|+++++++|++++..  .++++++|+.|+|++|+++. +| .+.++++|++
T Consensus       132 -~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~  204 (210)
T d1h6ta2         132 -HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV  204 (210)
T ss_dssp             -GCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred             -ccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCE
Confidence             13456667777777653  234666778888888888887533  27778888888888888874 44 4778888888


Q ss_pred             EeccC
Q 043317          594 FNVSY  598 (700)
Q Consensus       594 L~ls~  598 (700)
                      |+|++
T Consensus       205 L~Ls~  209 (210)
T d1h6ta2         205 LELFS  209 (210)
T ss_dssp             EEEEE
T ss_pred             EEccC
Confidence            88764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=1.8e-17  Score=153.19  Aligned_cols=174  Identities=16%  Similarity=0.184  Sum_probs=126.9

Q ss_pred             CEEEccCccCcccCCCccCCCCCcEEEccCCcCccC-cchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCC
Q 043317          357 KLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGP-IPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHN  435 (700)
Q Consensus       357 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  435 (700)
                      +.++.+++.++.++.+.  .+++++|+|++|+|++. .+..|..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            45666666666555443  25678888888888653 3556677888888888888888777888888888888888888


Q ss_pred             ccCCCCCchhhhhhhhhhhhccccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCcc
Q 043317          436 RFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSN  515 (700)
Q Consensus       436 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  515 (700)
                      ++++..|..|.+                                                                    
T Consensus        89 ~l~~l~~~~F~~--------------------------------------------------------------------  100 (192)
T d1w8aa_          89 KIKEISNKMFLG--------------------------------------------------------------------  100 (192)
T ss_dssp             CCCEECSSSSTT--------------------------------------------------------------------
T ss_pred             cccccCHHHHhC--------------------------------------------------------------------
Confidence            887555555544                                                                    


Q ss_pred             ccccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeEe
Q 043317          516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFN  595 (700)
Q Consensus       516 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  595 (700)
                      ++.|+.|+|++|+|++..|+.|..+++|++|+|++|.+....+. ..-...++.+.+..|.++...|..+   ..++.++
T Consensus       101 l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~  176 (192)
T d1w8aa_         101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKD  176 (192)
T ss_dssp             CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGG
T ss_pred             CCcccccccCCccccccCHHHhcCCcccccccccccccccccch-HHHhhhhhhhcccCCCeEeCCChhh---cCCEeee
Confidence            36778888888888888888899999999999999998754332 2222346677788888887777654   4456778


Q ss_pred             ccCCcCccc
Q 043317          596 VSYNNLSGL  604 (700)
Q Consensus       596 ls~N~l~~~  604 (700)
                      ++.|.+.+.
T Consensus       177 L~~n~l~C~  185 (192)
T d1w8aa_         177 LPHSEFKCS  185 (192)
T ss_dssp             SCTTTCCCC
T ss_pred             cCHhhCcCC
Confidence            888888743

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.5e-16  Score=147.67  Aligned_cols=163  Identities=20%  Similarity=0.224  Sum_probs=94.6

Q ss_pred             CcCcEEEcCCcccccccccccCCCCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEc
Q 043317          258 ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLM  337 (700)
Q Consensus       258 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  337 (700)
                      .+|++|++++|.+....  .+..+++|++|++++|++++..  .++.+++|++|++++|++++ +| .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            34444444444443321  2344555555555555555432  24455666666666666653 33 3556666666666


Q ss_pred             ccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccC
Q 043317          338 SNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQI  417 (700)
Q Consensus       338 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~  417 (700)
                      ++|.+.. + ..+..++.++.+++++|.+++.. ....+++|+++++++|++++. + .+..+++|++|++++|+++. +
T Consensus       120 ~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l  193 (210)
T d1h6ta2         120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-L  193 (210)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-C
T ss_pred             ccccccc-c-ccccccccccccccccccccccc-ccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-C
Confidence            6666542 2 23556666666666666665432 122566777777777777643 2 26677777777777777763 4


Q ss_pred             ChhhhccCCCCEEecC
Q 043317          418 PDQICQLRRLGMMDLS  433 (700)
Q Consensus       418 ~~~~~~l~~L~~L~Ls  433 (700)
                      + .+.++++|++|+|+
T Consensus       194 ~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELF  208 (210)
T ss_dssp             G-GGTTCTTCSEEEEE
T ss_pred             h-hhcCCCCCCEEEcc
Confidence            3 47777777777775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=8.8e-16  Score=142.56  Aligned_cols=139  Identities=25%  Similarity=0.300  Sum_probs=67.1

Q ss_pred             CCCCcEEEcccCcccccccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEE
Q 043317          281 LTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLS  360 (700)
Q Consensus       281 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  360 (700)
                      +++|++|++++|++++..+  +.++++|++|++++|.+... + .+.+++.|+.|++++|.+...  ..+..+++|+.|+
T Consensus        61 l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~  134 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLE  134 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred             CCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccccccccccccc--cccchhhhhHHhh
Confidence            4444444444444443221  44445555555555544422 2 244455555555555544422  1244455555555


Q ss_pred             ccCccCcccCCCccCCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEE
Q 043317          361 VSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMM  430 (700)
Q Consensus       361 l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  430 (700)
                      +++|.+.... ....+++|+.|++++|++++. + .+.++++|++|++++|++++ ++ .++.+++|+.|
T Consensus       135 l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         135 LSSNTISDIS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCCG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhhhhcccc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            5555554321 222455566666666655532 2 25556666666666666653 22 35556665554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6e-16  Score=143.72  Aligned_cols=72  Identities=31%  Similarity=0.492  Sum_probs=45.8

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNF  594 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  594 (700)
                      +.|+.|++++|++.. + +.+..+++|+.|++++|++++..  .++++++|++|++++|+++. +| .++++++|+.|
T Consensus       128 ~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         128 TNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            556666666666652 2 24666777777777777776432  36677777777777777764 33 36666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-16  Score=157.19  Aligned_cols=182  Identities=20%  Similarity=0.191  Sum_probs=98.4

Q ss_pred             CCCCEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCc-CccccChhHHhhccCCcE
Q 043317          135 YDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNN-FIGTLPQDMGTILKKLLV  213 (700)
Q Consensus       135 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~  213 (700)
                      .+|++||++++.+++.....++..+++|++|+++++.+.+.....+..+++|++|++++|. ++...-..+...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4556666665555443333444555666666666665554444444555566666666643 322111233444677888


Q ss_pred             EEccCCc-CCcc-CCcccc-CCCCCcEEEccCc--cCCCCCchHHHhcCCcCcEEEcCCcc-cccccccccCCCCCCcEE
Q 043317          214 LDISNNH-FEGN-IPSSVG-EMKELIILHLSKN--NFSEDFSTPFLTGCISLWFLDLSDNN-FYGQFFSKDLNLTQMEFL  287 (700)
Q Consensus       214 L~L~~n~-i~~~-~~~~l~-~l~~L~~L~L~~n--~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  287 (700)
                      |+++++. ++.. ....+. ..++|+.|+++++  .+++.....+...+++|++|++++|. +++.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            8887753 3311 111222 2356777777754  34333233344556777777777653 555555555666666666


Q ss_pred             EcccC-cccccccccccCCCCCcEEEcccC
Q 043317          288 YLENN-KFSGKIEEGLLNSTKLYQLDISHN  316 (700)
Q Consensus       288 ~L~~n-~l~~~~~~~~~~~~~L~~L~Ls~n  316 (700)
                      ++++| .+++.....++.+++|+.|+++++
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66664 455444445556666666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.8e-16  Score=153.76  Aligned_cols=224  Identities=20%  Similarity=0.149  Sum_probs=131.6

Q ss_pred             CEEEccCCCCCccCchHHhhcCCCCCEEEccCCcCcccCCCCCCCCCCccEEeCCCCcCccccChhHHhhccCCcEEEcc
Q 043317          138 KYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDIS  217 (700)
Q Consensus       138 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~  217 (700)
                      +.+|++++.+.......+..  .....+.+......... ........|++||++++.+.......++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46788887775444444432  23556666655544222 2233456789999998887655555666668899999999


Q ss_pred             CCcCCccCCccccCCCCCcEEEccCc-cCCCCCchHHHhcCCcCcEEEcCCcc-ccccc-cccc-CCCCCCcEEEcccCc
Q 043317          218 NNHFEGNIPSSVGEMKELIILHLSKN-NFSEDFSTPFLTGCISLWFLDLSDNN-FYGQF-FSKD-LNLTQMEFLYLENNK  293 (700)
Q Consensus       218 ~n~i~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-~~~~-~~l~~L~~L~L~~n~  293 (700)
                      ++.+....+..++++++|++|+++++ .+++..-..+..++++|++|+++++. ++... ...+ ...++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            99888777778888999999999885 45433333344568888888888753 33211 1111 223566666666542


Q ss_pred             --cccc-ccccccCCCCCcEEEcccC-cCCCCcchhhcCCCCCcEEEcccC-cCcccchhhccCCCCCCEEEccCc
Q 043317          294 --FSGK-IEEGLLNSTKLYQLDISHN-FLSGHIPHWMGNFSNLEILLMSNN-CLEGNIPVQLLNHRTLKLLSVSEN  364 (700)
Q Consensus       294 --l~~~-~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n  364 (700)
                        ++.. +......+++|++|++++| .+++.....+..+++|++|++++| .+++.....+.++++|+.|+++++
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              2211 1222344566666666654 344444455555566666666653 344333334444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=4.3e-15  Score=151.01  Aligned_cols=87  Identities=21%  Similarity=0.199  Sum_probs=58.4

Q ss_pred             ccccceEECCCCcCccc----CCccccCcCCCcEEeCCCccCccccCcc----ccc--ccCCCEEeCCCCcCccc----C
Q 043317          516 LNYMVGLDLSCNELTGN----VPSEIGDLQKIRGLNLSHNCLSGSIPRS----FSN--LQMIESLDLSNNRLSGQ----I  581 (700)
Q Consensus       516 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~--l~~L~~L~Ls~N~l~~~----~  581 (700)
                      .+.|+.|+|++|.++..    +...+..+++|++|+|++|.|++.-...    +..  .+.|++||+++|+++..    +
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l  293 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  293 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHH
Confidence            35677788888877532    3345667788888888888887542222    222  35688888888888643    2


Q ss_pred             ccccc-CCCCCCeEeccCCcCc
Q 043317          582 PAQLI-ELNFLSNFNVSYNNLS  602 (700)
Q Consensus       582 p~~l~-~l~~L~~L~ls~N~l~  602 (700)
                      ...+. +.+.|++|++++|++.
T Consensus       294 ~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         294 KTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHccCCCCCEEECCCCcCC
Confidence            33332 4678888888888886

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.2e-14  Score=125.59  Aligned_cols=128  Identities=19%  Similarity=0.171  Sum_probs=94.2

Q ss_pred             ccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCcc-CCCCCc
Q 043317          302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSF-NLSSLK  380 (700)
Q Consensus       302 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~  380 (700)
                      +.++.++++|+|++|+|+. ++..+..+++|+.|++++|+++. ++ .+..+++|++|++++|+++...+..+ .+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            4566677888888888773 45556677788888888888773 33 47778888888888888887777666 688888


Q ss_pred             EEEccCCcCccCcc-hhhhCCCCccEEECcCCcccccC---ChhhhccCCCCEEec
Q 043317          381 HLYVQKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQI---PDQICQLRRLGMMDL  432 (700)
Q Consensus       381 ~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~L  432 (700)
                      +|++++|+++.... ..+..+++|++|++++|+++...   +..+..+++|++||-
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            88888888874321 45777888999999999887432   135778888988873

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=1.5e-14  Score=147.01  Aligned_cols=42  Identities=29%  Similarity=0.417  Sum_probs=25.9

Q ss_pred             ccCCCCCcEEEcccCcCCCC----cchhhcCCCCCcEEEcccCcCc
Q 043317          302 LLNSTKLYQLDISHNFLSGH----IPHWMGNFSNLEILLMSNNCLE  343 (700)
Q Consensus       302 ~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  343 (700)
                      +..+++|+.|++++|.+...    +...+...++|++|++++|.+.
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence            44556777777777776543    2233445667777777777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.1e-14  Score=126.43  Aligned_cols=79  Identities=13%  Similarity=0.085  Sum_probs=47.3

Q ss_pred             cccceEECCCCcCcccCCccccCcCCCcEEeCCCccCccccC-cccccccCCCEEeCCCCcCcccC---cccccCCCCCC
Q 043317          517 NYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIP-RSFSNLQMIESLDLSNNRLSGQI---PAQLIELNFLS  592 (700)
Q Consensus       517 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~  592 (700)
                      ++|+.|++++|++++..+..+..+++|++|++++|+++.... ..+..+++|++|++++|+++...   +..+..+++|+
T Consensus        63 ~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          63 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred             cchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcC
Confidence            556666666666665444445566667777777776663221 35666677777777777765332   12455666676


Q ss_pred             eEe
Q 043317          593 NFN  595 (700)
Q Consensus       593 ~L~  595 (700)
                      +||
T Consensus       143 ~LD  145 (162)
T d1a9na_         143 VLD  145 (162)
T ss_dssp             EET
T ss_pred             eeC
Confidence            665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2.7e-13  Score=114.16  Aligned_cols=118  Identities=25%  Similarity=0.245  Sum_probs=90.6

Q ss_pred             CEEECCCCcCCcccchhccCCCCCCEEeCCCCcCCCCCChhhccCCCCCcEEEcccCccccccccCCCCCCCcccEEEee
Q 043317           41 KVLDISHNQLSGSLSSTITSLTSLEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELA  120 (700)
Q Consensus        41 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~  120 (700)
                      |+|+|++|+++.. + .++++++|++|++++|+++ .+| ..++.+++|++|++++|.+. .++  .+..+++|++|+++
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp-~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCC-GGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cch-hhhhhhhccccccccccccc-ccC--ccccccccCeEECC
Confidence            6799999999844 4 4888999999999999998 566 35788889999999887654 333  47788888899999


Q ss_pred             CCCCCCcC--hhhcCCCCCCEEEccCCCCCc--cCchHHhhcCCCCCEE
Q 043317          121 NCSLNVVP--TFLLHQYDLKYLDLSLNNLVG--DFPSWMLQNNTKLEVL  165 (700)
Q Consensus       121 ~n~l~~~p--~~l~~~~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L  165 (700)
                      +|+++.+|  ..+..+++|++|++++|+++.  ..+..+...+++|+.+
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            88887766  357788889999999888863  2345555667777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=4.1e-13  Score=113.02  Aligned_cols=101  Identities=28%  Similarity=0.353  Sum_probs=47.5

Q ss_pred             EEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcC
Q 043317          310 QLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNAL  389 (700)
Q Consensus       310 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l  389 (700)
                      .|++++|+++ .++ .+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++.. ....+++|++|++++|++
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCcc
Confidence            3444444444 222 2444444555555555444 23334444444555555554444332 122455555555555555


Q ss_pred             ccCc-chhhhCCCCccEEECcCCccc
Q 043317          390 SGPI-PDMLFRSSKLMTLDLRGNNLE  414 (700)
Q Consensus       390 ~~~~-~~~~~~~~~L~~L~l~~N~l~  414 (700)
                      +... ...+..+++|++|++++|+++
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            4321 134455556666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=6.7e-14  Score=128.87  Aligned_cols=143  Identities=20%  Similarity=0.241  Sum_probs=90.8

Q ss_pred             CcEEEccCC--cCccCcchhhhCCCCccEEECcCCcccccCChhhhccCCCCEEecCCCccCCCCCchhhhhhhhhhhhc
Q 043317          379 LKHLYVQKN--ALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENV  456 (700)
Q Consensus       379 L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~  456 (700)
                      .+.+++.+.  .+. .++..+..+++|++|++++|+|+. ++ .+..+++|+.|++++|+++ .+|..+..         
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~---------   91 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV---------   91 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH---------
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc---------
Confidence            444555443  232 456677778888888888888873 43 4777888888888888776 33322211         


Q ss_pred             cccCCCccCCCCCcccccccccccccccccccccCCCCcccceEEEeeccccccccCccccccceEECCCCcCcccCCcc
Q 043317          457 DLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSE  536 (700)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  536 (700)
                                                                                 ++.|+.|++++|+++..  ..
T Consensus        92 -----------------------------------------------------------~~~L~~L~l~~N~i~~l--~~  110 (198)
T d1m9la_          92 -----------------------------------------------------------ADTLEELWISYNQIASL--SG  110 (198)
T ss_dssp             -----------------------------------------------------------HHHCCEEECSEEECCCH--HH
T ss_pred             -----------------------------------------------------------ccccccccccccccccc--cc
Confidence                                                                       14566777777777743  23


Q ss_pred             ccCcCCCcEEeCCCccCccccC-cccccccCCCEEeCCCCcCcccCccc----------ccCCCCCCeEe
Q 043317          537 IGDLQKIRGLNLSHNCLSGSIP-RSFSNLQMIESLDLSNNRLSGQIPAQ----------LIELNFLSNFN  595 (700)
Q Consensus       537 ~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  595 (700)
                      +..+++|+.|++++|+++.... ..++.+++|+.|+|++|++....+..          +..+++|+.||
T Consensus       111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            6677777777777777764322 45677777777777777776544332          44566666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1e-11  Score=109.01  Aligned_cols=86  Identities=21%  Similarity=0.196  Sum_probs=49.1

Q ss_pred             ccccceEECCCC-cCcccCCccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 043317          516 LNYMVGLDLSCN-ELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNF  594 (700)
Q Consensus       516 l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  594 (700)
                      ++++++|++++| .++...+..|.++++|+.|+|++|+|+...|.+|.++++|++|||++|+|+...+..+..+ .|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-ccccc
Confidence            455566666544 3555555556666666666666666665555566666666666666666664444444333 46666


Q ss_pred             eccCCcCc
Q 043317          595 NVSYNNLS  602 (700)
Q Consensus       595 ~ls~N~l~  602 (700)
                      +|++|++.
T Consensus       109 ~L~~Np~~  116 (156)
T d2ifga3         109 VLSGNPLH  116 (156)
T ss_dssp             ECCSSCCC
T ss_pred             ccCCCccc
Confidence            66666664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=1.7e-13  Score=126.04  Aligned_cols=130  Identities=25%  Similarity=0.243  Sum_probs=88.2

Q ss_pred             ccccccCCCCCcEEEcccCcCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccCccCcccCCCccCCC
Q 043317          298 IEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLS  377 (700)
Q Consensus       298 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~  377 (700)
                      ++..+..+++|++|++++|+|+.. + .+..+++|+.|++++|.++ .++.....+++|+.|++++|.++... ....++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~  115 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLV  115 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHH-HHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccccccccccccccccccc-cccccc
Confidence            345567777778888887777743 3 3677777888888877776 34444444557778888888777542 222677


Q ss_pred             CCcEEEccCCcCccCcc-hhhhCCCCccEEECcCCcccccCCh----------hhhccCCCCEEe
Q 043317          378 SLKHLYVQKNALSGPIP-DMLFRSSKLMTLDLRGNNLEGQIPD----------QICQLRRLGMMD  431 (700)
Q Consensus       378 ~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~N~l~~~~~~----------~~~~l~~L~~L~  431 (700)
                      +|++|++++|+++.... ..+..+++|++|++++|++....+.          .+..+++|+.||
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            78888888888764321 4577788888888888887644332          256788888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.6e-11  Score=106.37  Aligned_cols=104  Identities=19%  Similarity=0.076  Sum_probs=51.8

Q ss_pred             cEEEcccCcccccccccccCCCCCcEEEcccC-cCCCCcchhhcCCCCCcEEEcccCcCcccchhhccCCCCCCEEEccC
Q 043317          285 EFLYLENNKFSGKIEEGLLNSTKLYQLDISHN-FLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSE  363 (700)
Q Consensus       285 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  363 (700)
                      +.++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|++++|+|+...+.+|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            33444444444 23344444455555555433 24444444455555555555555555544455555555555555555


Q ss_pred             ccCcccCCCccCCCCCcEEEccCCcC
Q 043317          364 NYLSGSMTSSFNLSSLKHLYVQKNAL  389 (700)
Q Consensus       364 n~l~~~~~~~~~l~~L~~L~l~~n~l  389 (700)
                      |+++...+..+...+|++|++++|.+
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCcccChhhhccccccccccCCCcc
Confidence            55555444444333455555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4.8e-08  Score=85.75  Aligned_cols=85  Identities=26%  Similarity=0.167  Sum_probs=43.6

Q ss_pred             hhhccCCCCCCEEEccCccCcccCC--Ccc-CCCCCcEEEccCCcCccCcchhhhCCCCccEEECcCCcccccCCh----
Q 043317          347 PVQLLNHRTLKLLSVSENYLSGSMT--SSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPD----  419 (700)
Q Consensus       347 ~~~~~~~~~L~~L~l~~n~l~~~~~--~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~----  419 (700)
                      +.....++.|++|++++|+|+...+  ..+ .+++|+.|++++|+++...+-.+.....|+.|++++|++......    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            3333445555666666665554422  112 456666666666666543332333344566666666666543321    


Q ss_pred             ---hhhccCCCCEEe
Q 043317          420 ---QICQLRRLGMMD  431 (700)
Q Consensus       420 ---~~~~l~~L~~L~  431 (700)
                         .+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               234566666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.5e-07  Score=81.02  Aligned_cols=80  Identities=24%  Similarity=0.155  Sum_probs=48.5

Q ss_pred             ccccceEECCCCcCcccC--CccccCcCCCcEEeCCCccCccccCcccccccCCCEEeCCCCcCcccCcc-------ccc
Q 043317          516 LNYMVGLDLSCNELTGNV--PSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPA-------QLI  586 (700)
Q Consensus       516 l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~  586 (700)
                      ++.|+.|+|++|+|+...  +..+..+++|+.|+|++|+|+...+-.+.....|+.|++++|+++.....       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            466777777777776432  34455667777777777777744333333445677777777777654332       245


Q ss_pred             CCCCCCeEe
Q 043317          587 ELNFLSNFN  595 (700)
Q Consensus       587 ~l~~L~~L~  595 (700)
                      .+++|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            566666664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.67  E-value=2.4e-05  Score=68.33  Aligned_cols=61  Identities=15%  Similarity=0.103  Sum_probs=36.6

Q ss_pred             CCCCcEEEccCCcCccC----cchhhhCCCCccEEECcCCccccc-------CChhhhccCCCCEEecCCCc
Q 043317          376 LSSLKHLYVQKNALSGP----IPDMLFRSSKLMTLDLRGNNLEGQ-------IPDQICQLRRLGMMDLSHNR  436 (700)
Q Consensus       376 l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~  436 (700)
                      .+.|++|++++|.++..    +...+...++|++|++++|.+...       +...+...++|+.|+++.+.
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            45566666666666532    223445556777777777754421       23445566788888887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.62  E-value=2.7e-05  Score=67.91  Aligned_cols=111  Identities=14%  Similarity=0.170  Sum_probs=54.0

Q ss_pred             CCCCCcEEEcccC-ccccc----ccccccCCCCCcEEEcccCcCCCC----cchhhcCCCCCcEEEcccCcCcccch---
Q 043317          280 NLTQMEFLYLENN-KFSGK----IEEGLLNSTKLYQLDISHNFLSGH----IPHWMGNFSNLEILLMSNNCLEGNIP---  347 (700)
Q Consensus       280 ~l~~L~~L~L~~n-~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~---  347 (700)
                      +.+.|++|+|+++ .++..    +...+...+.|++|++++|.+...    +...+...+.|++|++++|.+.....   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456666666653 34321    122344445566666666655421    22233334455555555555542211   


Q ss_pred             -hhccCCCCCCEEEccCccCcccCCCccCCCCCcEEEccCCcCccC-------cchhhhCCCCccEEECcCCcc
Q 043317          348 -VQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGP-------IPDMLFRSSKLMTLDLRGNNL  413 (700)
Q Consensus       348 -~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~~L~~L~l~~N~l  413 (700)
                       ..+.                       ..++|++|++++|.+...       +...+...++|+.|+++.+..
T Consensus        93 ~~aL~-----------------------~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTL-----------------------VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTT-----------------------TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHH-----------------------hCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence             1222                       234566666665544321       334455567778887766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.88  E-value=0.00026  Score=61.36  Aligned_cols=62  Identities=21%  Similarity=0.306  Sum_probs=35.3

Q ss_pred             CCCCcEEEccCCcCccC----cchhhhCCCCccEEEC--cCCcccc----cCChhhhccCCCCEEecCCCcc
Q 043317          376 LSSLKHLYVQKNALSGP----IPDMLFRSSKLMTLDL--RGNNLEG----QIPDQICQLRRLGMMDLSHNRF  437 (700)
Q Consensus       376 l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l--~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l  437 (700)
                      .++++.+++++|.+...    +...+...++|+.++|  ++|.+..    .+...+...+.|+.|+++.+..
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            45566666666665432    2244455667776554  3555542    2344556777888888876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.84  E-value=0.00035  Score=60.51  Aligned_cols=40  Identities=20%  Similarity=0.265  Sum_probs=17.1

Q ss_pred             CCCCCcEEEcccCcccccc----cccccCCCCCcEEEcccCcCC
Q 043317          280 NLTQMEFLYLENNKFSGKI----EEGLLNSTKLYQLDISHNFLS  319 (700)
Q Consensus       280 ~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~  319 (700)
                      ..+.|++|++++|.++...    ...+...++++.+++++|.+.
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            3444444444444443211    122233445555555555443