Citrus Sinensis ID: 043342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360---
Protein Sequence
MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAKGTD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccHHHHccccccccccccccccHHHHHHHcHHHHHHHHccccccccccccccccHHHHHccccccEEEEccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEcccccccHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHccccc
Coil and Loop (DISEMBL)
MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKeenlsitrsnnnnynepkrtkddvvvaapnprgpeadsgrphdtesmiaeqgsvrneeslpcsdvdsdgdddwegvestELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIategpcsapqpsaLKMTARAKWQAWQklgamppeeAMQKYIDIVTELyptwaagsslkskrgqedaastdskapmgpvfssfayeeesgndlKMDAIHAFAREGDMDNLLKCIENGvsvnlrdsegraplhwavdrghLNISELLVsknadvnakdnegqtplhyaVVCDREAIAQFLVKQnadigmkdndgnspchvcesdwpwmlhaakgtd
Flexible Loop (DISEMBL)
MSDWQPLLQSILIGLLFSYLVAKLISVVLSFkeenlsitrsnnnnynepkrtkddvvvaapnprgpeadsgrphdTESMIAeqgsvrneeslpcsdvdsdgddDWEGVESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDaastdskapmgpVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAKGTD
Low Complexity Region (SEG)
MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCsdvdsdgdddwegveSTELDEMFsaatafvaasaaassQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAKGTD
Disordered region (IsUnstruct)
****QPLLQSILIGLLFSYLVAKLISVVLSFKEEN**************************************************************************************AFVA***********NDVQLQLYALYKIATEGPC********KMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAA****************************************MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA****GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLH******
Disordered Region (DISOPRED)
*SDWQ*LLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAKG**
Disordered Region (DISEMBL)
MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPNPR*************SMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAATAFV***********SNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAG******************APMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAKGTD
Disordered Region (DISPRO)
*SDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAK***
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAKGTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	363	2.2.26 [Sep-21-2011]
Q9STP8	354	Acyl-CoA-binding domain-c	yes	no	0.972	0.997	0.648	1e-126
Q9SM23	338	Acyl-CoA-binding domain-c	no	no	0.909	0.976	0.648	1e-121
Q9BR61	282	Acyl-CoA-binding domain-c	yes	no	0.650	0.836	0.400	2e-38
Q5RJK8	282	Acyl-CoA-binding domain-c	yes	no	0.652	0.840	0.378	2e-37
A2VDR2	282	Acyl-CoA-binding domain-c	yes	no	0.652	0.840	0.382	6e-37
Q9D061	282	Acyl-CoA-binding domain-c	yes	no	0.652	0.840	0.370	2e-36
Q4V8X4	300	Acyl-CoA-binding domain-c	yes	no	0.575	0.696	0.397	2e-35
Q4V869	286	Acyl-CoA-binding domain-c	N/A	no	0.669	0.849	0.350	5e-33
Q66JD7	286	Acyl-CoA-binding domain-c	yes	no	0.650	0.825	0.337	3e-32
Q54GC8	288	Acyl-CoA-binding domain-c	yes	no	0.650	0.819	0.293	7e-27

>sp|Q9STP8|ACBP2_ARATH Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/364 (64%), Positives = 283/364 (77%), Gaps = 11/364 (3%)

Query: 1   MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAA 60
           M DW  L QS+++GL+FSYL+AKLIS+V++FKE+NLS+TR    +  E K    D     
Sbjct: 1   MGDWAQLAQSVILGLIFSYLLAKLISIVVTFKEDNLSLTRHPEESQLEIKPEGVD----- 55

Query: 61  PNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAA 120
            + R   +  G   + +S++AEQGS R++     +  DS+ DDDWEGVESTELDE FSAA
Sbjct: 56  -SRRLDSSCGGFGGEADSLVAEQGSSRSDS---VAGDDSEEDDDWEGVESTELDEAFSAA 111

Query: 121 TAFVAASAAAS-SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGA 179
           T FV  +AA   SQKV +DVQ QLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGA
Sbjct: 112 TLFVTTAAADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGA 171

Query: 180 MPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGN 239
           MPPEEAM+KYI+IVT+LYPTW  G      RG +DAAS +S+  MGPVFSS  Y+EES N
Sbjct: 172 MPPEEAMEKYIEIVTQLYPTWLDGGVKAGSRGGDDAAS-NSRGTMGPVFSSLVYDEESEN 230

Query: 240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
           +LK+DAIH FAREG+++NLLK IE+G+ VN RDSEGR PLHWA+DRGHLNI+++LV KNA
Sbjct: 231 ELKIDAIHGFAREGEVENLLKSIESGIPVNARDSEGRTPLHWAIDRGHLNIAKVLVDKNA 290

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAA 359
           DVNAKDNEGQTPLHYAVVCDREAIA+FLVKQNA+   KD DGNSP  +CESDWPW+  +A
Sbjct: 291 DVNAKDNEGQTPLHYAVVCDREAIAEFLVKQNANTAAKDEDGNSPLDLCESDWPWIRDSA 350

Query: 360 KGTD 363
           K  D
Sbjct: 351 KQAD 354

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with palmitoyl-CoA, but not with oleoyl-CoA. Binds to lead ions (Pb). May function as an intracellular carrier of acyl-CoA esters. Required for proper phospholipid and, to a lower extent, galactolipid composition.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SM23|ACBP1_ARATH Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2

 Score =  433 bits (1114), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/356 (64%), Positives = 274/356 (76%), Gaps = 26/356 (7%)

Query: 1   MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAA 60
           M+DW  L QSI+ GL+F+YL+AKLIS++L+FK+ENLS+TR N+   +E +          
Sbjct: 1   MADWYQLAQSIIFGLIFAYLLAKLISILLAFKDENLSLTR-NHTTQSEYE---------- 49

Query: 61  PNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAA 120
            N R  E  +G   +T+S+IAEQGS+R +E     D          GVESTELDE FSAA
Sbjct: 50  -NLRKVETLTGISGETDSLIAEQGSLRGDEDESDDDDWE-------GVESTELDEAFSAA 101

Query: 121 TAFVAASAAAS-SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGA 179
           TAFVAA+A+   SQKVSN++QLQLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGA
Sbjct: 102 TAFVAAAASDRLSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGA 161

Query: 180 MPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGN 239
           MPPEEAM+KYID+VT+LYP W  G S +  R  E A       PMGPVFSS  YEEES N
Sbjct: 162 MPPEEAMEKYIDLVTQLYPAWVEGGSKRRNRSGEAAG------PMGPVFSSLVYEEESDN 215

Query: 240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
           +LK+DAIHAFAREG+++NLLKCIENG+ VN RDSEGR PLHWA+DRGHLN++E LV KNA
Sbjct: 216 ELKIDAIHAFAREGEVENLLKCIENGIPVNARDSEGRTPLHWAIDRGHLNVAEALVDKNA 275

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWM 355
           DVNAKDNEGQT LHYAVVC+REA+A+FLVKQ AD  +KD DGNSP  +CES+W WM
Sbjct: 276 DVNAKDNEGQTSLHYAVVCEREALAEFLVKQKADTTIKDEDGNSPLDLCESEWSWM 331

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with arachidonyl-CoA, barely with oleoyl-CoA, but not with palmitoyl-CoA. Confers tolerance and binds to lead ions Pb(2+), probably by promoting lead translocation from roots to shoots. May function as an intracellular carrier of acyl-CoA esters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9BR61|ACBD6_HUMAN Acyl-CoA-binding domain-containing protein 6 OS=Homo sapiens GN=ACBD6 PE=1 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 140/252 (55%), Gaps = 16/252 (6%)

Query: 99  SDGDDDWEGVE---STELDEMFSAATAFVAASAAASS--QKVSNDVQLQLYALYKIATEG 153
           S GDD  E VE   S E++E    A  F  A+A      Q  S +  L LYA YK    G
Sbjct: 20  SSGDDSGE-VEFPHSPEIEETSCLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVG 78

Query: 154 PCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQE 213
            C+ P+PS      + KW+AW+ LG   P +AMQ+YI +V +L P W     +  K+G+E
Sbjct: 79  NCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGW--NPQIPEKKGKE 136

Query: 214 DAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIEN-GVSVNLRD 272
             A+T      GPV SS  +EE    + K   I  + RE ++D++ K I++  V VN++D
Sbjct: 137 --ANTGFG---GPVISSLYHEETIREEDK--NIFDYCRENNIDHITKAIKSKNVDVNVKD 189

Query: 273 SEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNA 332
            EGRA LHWA DRGH  +  +L+   AD+N +DNEGQT LHYA  C+   I + L++  A
Sbjct: 190 EEGRALLHWACDRGHKELVTVLLQHRADINCQDNEGQTALHYASACEFLDIVELLLQSGA 249

Query: 333 DIGMKDNDGNSP 344
           D  ++D DG  P
Sbjct: 250 DPTLRDQDGCLP 261

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Homo sapiens (taxid: 9606)

>sp|Q5RJK8|ACBD6_RAT Acyl-CoA-binding domain-containing protein 6 OS=Rattus norvegicus GN=Acbd6 PE=2 SV=1

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 136/251 (54%), Gaps = 14/251 (5%)

Query: 99  SDGDD--DWEGVESTELDEMFSAATAFVAASAAASS--QKVSNDVQLQLYALYKIATEGP 154
           S GDD  D E  ++ E +   S A  F  A+A      Q  S +  L LYA YK    G 
Sbjct: 20  SSGDDSGDLESFQTPEAEATRSLAELFEKAAAHVQGLVQVASREQLLYLYARYKQVKVGN 79

Query: 155 CSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQED 214
           C+ P+P+      + KW+AW+ LG   P +AMQ+YI  V +L P W     +  K+G+E 
Sbjct: 80  CNIPKPNFFDFEGKQKWEAWKALGDSSPSQAMQEYIAAVKKLDPGW--NPQVSEKKGKEG 137

Query: 215 AASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENG-VSVNLRDS 273
           ++        GPV SS  +EE    + K   I  + RE ++D++ K I++  V VN+ D 
Sbjct: 138 SSGFG-----GPVVSSLYHEETIREEDK--NIFDYCRENNIDHITKAIKSKTVDVNMTDE 190

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD 333
           EGRA LHWA DRGH  + ++L+   A +N +DNEGQT LHYA  C+   I + L++  AD
Sbjct: 191 EGRALLHWACDRGHKELVKVLLQCEAGINCQDNEGQTALHYAAACEFSDIVELLLQSGAD 250

Query: 334 IGMKDNDGNSP 344
             ++D DG  P
Sbjct: 251 PTLRDQDGCLP 261

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Rattus norvegicus (taxid: 10116)

>sp|A2VDR2|ACBD6_BOVIN Acyl-CoA-binding domain-containing protein 6 OS=Bos taurus GN=ACBD6 PE=2 SV=1

 Score =  155 bits (391), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/251 (38%), Positives = 138/251 (54%), Gaps = 14/251 (5%)

Query: 99  SDGDD--DWEGVESTELDEMFSAATAFVAASAAASS--QKVSNDVQLQLYALYKIATEGP 154
           S GDD  D E ++S +++   S    F  A+       Q  S +  L LYA YK    G 
Sbjct: 20  SSGDDSGDVESLQSPKIEASRSLPELFEKAAEHLQGLVQVASREQLLYLYARYKQVKVGN 79

Query: 155 CSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQED 214
           C+ P+PS      + KW+AW+ LG   P +AMQ+YI +V +L P+W   S    K+G+E 
Sbjct: 80  CNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPSWNPQSP--EKKGKE- 136

Query: 215 AASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIEN-GVSVNLRDS 273
            A+T      GPV SS  +EE    + K   I  + RE ++D++ K I+   + VN++D 
Sbjct: 137 -ANTGFG---GPVVSSLYHEEIIREEDK--DIFDYCRENNIDHITKVIKTKNMDVNMKDE 190

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD 333
           EGR  LHWA DRGH  +  +L+   AD+N +DNEGQT LHYA  C+   I + L++  AD
Sbjct: 191 EGRTLLHWACDRGHKELVTVLLQYRADINCQDNEGQTALHYAAACEFLDIVELLLQSGAD 250

Query: 334 IGMKDNDGNSP 344
             ++D DG  P
Sbjct: 251 PTLRDQDGCLP 261

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Bos taurus (taxid: 9913)

>sp|Q9D061|ACBD6_MOUSE Acyl-CoA-binding domain-containing protein 6 OS=Mus musculus GN=Acbd6 PE=1 SV=2

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/251 (37%), Positives = 136/251 (54%), Gaps = 14/251 (5%)

Query: 99  SDGDD--DWEGVESTELDEMFSAATAFVAASAAASS--QKVSNDVQLQLYALYKIATEGP 154
           S GDD  D E  ++ E +   S A  F  A+A      Q  S +  L LYA +K    G 
Sbjct: 20  SSGDDSGDMESFQTPEAEGTRSLAELFEKAAAHVQGLVQVASREQLLYLYARFKQVKVGN 79

Query: 155 CSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQED 214
           C+ P+P+      + KW+AW+ LG   P +AMQ+YI  V +L P W     +  K+G+E 
Sbjct: 80  CNTPKPNFFDFEGKQKWEAWKALGDSSPSQAMQEYIAAVKKLDPGW--NPQVSEKKGKEG 137

Query: 215 AASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVS-VNLRDS 273
           ++        GPV SS  +EE    + K   I  + RE ++D++ K I++  + VN+ D 
Sbjct: 138 SSGFG-----GPVVSSLYHEETIREEDK--NIFDYCRENNIDHIAKAIKSKAADVNMTDE 190

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD 333
           EGRA LHWA DRGH  + ++L+   A +N +DNEGQT LHYA  C+   I + L++  AD
Sbjct: 191 EGRALLHWACDRGHKELVKVLLQYEAGINCQDNEGQTALHYAAACEFLDIVELLLQSGAD 250

Query: 334 IGMKDNDGNSP 344
             ++D DG  P
Sbjct: 251 PTLRDQDGCLP 261

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Mus musculus (taxid: 10090)

>sp|Q4V8X4|ACBD6_DANRE Acyl-CoA-binding domain-containing protein 6 OS=Danio rerio GN=acbd6 PE=2 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 121/219 (55%), Gaps = 10/219 (4%)

Query: 133 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI 192
           Q  S +  L LYA +K    G C+  +P       + KW AW++LG M  E+AMQ+Y+  
Sbjct: 76  QTASREQLLYLYARFKQVKVGKCNTSKPGFFDFEGQRKWSAWKQLGDMSAEQAMQEYVTC 135

Query: 193 VTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFARE 252
           V  L P  +  SS   +RG E           GP  SS   EE+   + K   I  + RE
Sbjct: 136 VHALDPEGSQKSS--ERRGGEKRTGFG-----GPAVSSLYQEEKIREEDKN--IFDYCRE 186

Query: 253 GDMDNLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
            +++++ K I +  V VN RD EGRA LHWA DRGH ++  LL+  NAD+N++D+EGQT 
Sbjct: 187 NNIEHVSKAISSKTVDVNTRDEEGRALLHWACDRGHKDLVSLLLQNNADINSQDDEGQTA 246

Query: 312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
           LHYA  C+   I + L+K  AD  +KD +G+ P  V ES
Sbjct: 247 LHYASACEFAEIVELLLKAGADPSIKDQEGSLPEEVTES 285

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA. Does not bind fatty acids.

Danio rerio (taxid: 7955)

>sp|Q4V869|ACBD6_XENLA Acyl-CoA-binding domain-containing protein 6 OS=Xenopus laevis GN=acbd6 PE=2 SV=1

 Score =  142 bits (357), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 125/257 (48%), Gaps = 14/257 (5%)

Query: 96  DVDSDG-DDDWEGVESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGP 154
           DV S G  D WE     EL   F  A   V   A+ +S     +  L LYA YK    G 
Sbjct: 14  DVCSGGCPDQWEEKTEEELQCQFEQAAKHVQNVASVAS----TEQLLYLYARYKQVKVGR 69

Query: 155 CSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQED 214
           C+ P+P       + KW+AW+ LG    ++AM +YI+ V +L P W       S +  E+
Sbjct: 70  CNTPKPGFFDYEGKKKWEAWKALGDYSHQQAMTEYIETVKKLDPDW-------SPQALEE 122

Query: 215 AASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENG-VSVNLRDS 273
                     GPV S     +E+  +   D I  + RE +   +   +  G V VN+ D 
Sbjct: 123 PYKEPKTTFGGPVVSCLYKVQETLREEDKD-IFDYCRENNHSRVSHALSTGSVDVNVADD 181

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD 333
           EGR+ LHWA DRGH  +  +++  NA +N +D+EGQTPLHYA  C+   I   L+   AD
Sbjct: 182 EGRSLLHWACDRGHTQLVSVILFHNAHINMQDSEGQTPLHYASACEFPDIVDLLLDHGAD 241

Query: 334 IGMKDNDGNSPCHVCES 350
             + DNDG  P  V +S
Sbjct: 242 PSLVDNDGFQPHEVTDS 258

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA. Does not bind fatty acids.

Xenopus laevis (taxid: 8355)

>sp|Q66JD7|ACBD6_XENTR Acyl-CoA-binding domain-containing protein 6 OS=Xenopus tropicalis GN=acbd6 PE=2 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 121/249 (48%), Gaps = 13/249 (5%)

Query: 103 DDWEGVESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSA 162
           + W+     EL   F  A   V   A+ +S     +  L LYA YK    G C+ P+P  
Sbjct: 22  EQWDEKTEEELQGQFEQAAKHVQNVASVAS----TEQLLFLYARYKQVKVGRCNTPKPGF 77

Query: 163 LKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKA 222
                + KW+AW+ LG    ++AM +YI+ V +L P W       S +  E+        
Sbjct: 78  FDYEGKKKWEAWKALGDYSCQQAMNEYIETVKKLDPDW-------SPQALEEPHKEPKTT 130

Query: 223 PMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENG-VSVNLRDSEGRAPLHW 281
             GPV S     +E+  +   D I  + RE ++  +   +  G + VN+ D EGR  LHW
Sbjct: 131 FGGPVVSCLYKVQETLREEDKD-IFDYCRENNISRVSHALSTGAIDVNVADDEGRCLLHW 189

Query: 282 AVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
           A DRGH  +  +L+  NA +N +D+EGQTPLHYA  C+   I   L+   AD  + DNDG
Sbjct: 190 ACDRGHTQLVSVLLFHNAHINMQDSEGQTPLHYASACEFPDIVDLLLDHGADPSLVDNDG 249

Query: 342 NSPCHVCES 350
             P  V +S
Sbjct: 250 FQPHEVTDS 258

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA. Does not bind fatty acids.

Xenopus tropicalis (taxid: 8364)

>sp|Q54GC8|ACBD6_DICDI Acyl-CoA-binding domain-containing protein 6 homolog OS=Dictyostelium discoideum GN=acbd6 PE=3 SV=1

 Score =  121 bits (304), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 130/276 (47%), Gaps = 40/276 (14%)

Query: 112 ELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKW 171
           +++  F  A  ++  ++   S  + N+ QL LY  YK AT G C+   P       ++KW
Sbjct: 5   QIENKFKLAVDYITNNSGKLSN-IKNEEQLYLYCNYKQATIGDCNTKAPPFYDYIGKSKW 63

Query: 172 QAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAP-------- 223
            +W  L  +    AM  YI +V  L P W   S++K +R  +     D +          
Sbjct: 64  NSWNSLKGVEKIVAMNSYISLVNALSPGW--DSNIKVERATQSVFLNDEEFKELEKKEKE 121

Query: 224 -----------------------MGPVFSSFAY-EEESGNDLKMDA---IHAFAREGDMD 256
                                  MGPV S F+  ++E+   L+ +    +  +    D++
Sbjct: 122 EKEELKKLEEENGGEIEKPKSKWMGPVLSKFSLVDDETLEKLEKNTKQDLGYWVSVNDIE 181

Query: 257 NLLKCIENGVSV-NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA 315
            + K IEN  ++ N  D +GR  L WA DRG+  I++LL+   ++VN +D EG TPLHYA
Sbjct: 182 RVKKEIENDKNIINEVDEDGRTALIWACDRGYFEIAKLLIENGSNVNVQDGEGMTPLHYA 241

Query: 316 VVCDREAIAQFLVKQNA-DIGMKDNDGNSPCHVCES 350
           VVCD+  I + L+ Q++ D  +KDN  + P    +S
Sbjct: 242 VVCDQFEICKLLLSQSSIDKSIKDNSDSIPSDFIDS 277

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA. Does not bind fatty acids.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
449497361	356	PREDICTED: acyl-CoA-binding domain-conta	0.958	0.977	0.660	1e-129
449456397	356	PREDICTED: acyl-CoA-binding domain-conta	0.958	0.977	0.657	1e-129
255570593	345	acyl-coenzyme A binding domain containin	0.933	0.982	0.677	1e-127
302143930	351	unnamed protein product [Vitis vinifera]	0.947	0.980	0.680	1e-126
359490812	874	PREDICTED: glucan endo-1,3-beta-glucosid	0.947	0.393	0.686	1e-126
388501756	357	unknown [Medicago truncatula]	0.950	0.966	0.697	1e-126
356509224	346	PREDICTED: acyl-CoA-binding domain-conta	0.939	0.985	0.663	1e-124
15234270	354	acyl-CoA binding protein 2 [Arabidopsis	0.972	0.997	0.648	1e-124
224132714	353	predicted protein [Populus trichocarpa]	0.950	0.977	0.680	1e-123
356518645	358	PREDICTED: acyl-CoA-binding domain-conta	0.920	0.932	0.675	1e-122

>gi|449497361|ref|XP_004160381.1| PREDICTED: acyl-CoA-binding domain-containing protein 2-like [Cucumis sativus]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/368 (66%), Positives = 296/368 (80%), Gaps = 20/368 (5%)

Query: 1   MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRS-------NNNNYNEPKRTK 53
           M++WQ  LQ++ IGL+FSYLVAKLIS+V+SFKE+NLS++R+       +N   ++ K  +
Sbjct: 1   MAEWQDFLQTLFIGLIFSYLVAKLISIVVSFKEDNLSLSRATSTPIPQSNEGVSKTKPIE 60

Query: 54  DDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTEL 113
            D+   +        D G  H+ +S+IAE GSVRN+ S+  SD D   DDDWEGVESTEL
Sbjct: 61  TDIGSGS-------GDFGFAHEADSVIAEHGSVRND-SIGGSDTD---DDDWEGVESTEL 109

Query: 114 DEMFSAATAFVAASAAAS-SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQ 172
           DE+FSAATAFVAASAA   S KVSN+VQLQLY  YKIATEGPCS PQPSALKMTARAKWQ
Sbjct: 110 DELFSAATAFVAASAADRLSPKVSNEVQLQLYGYYKIATEGPCSTPQPSALKMTARAKWQ 169

Query: 173 AWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFA 232
           AWQKLGAMPPEEAMQKYIDIVTEL+P+W AG+S KSK G  DA S DS+ PMGPVFS+F 
Sbjct: 170 AWQKLGAMPPEEAMQKYIDIVTELFPSWVAGASGKSKDGNADARSKDSRGPMGPVFSTFV 229

Query: 233 YEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISE 292
           YEE +GN+L+++ IH FAREG+++NLLKCIENGVSVN++DSEGR PLHWAVDRGH N+ E
Sbjct: 230 YEE-TGNELELEDIHGFAREGELENLLKCIENGVSVNIKDSEGRTPLHWAVDRGHSNVVE 288

Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDW 352
           +LVS+NAD++ KD +GQTPLHYAVVCDRE IA++LVK NA++  KDNDG SPC +CES+W
Sbjct: 289 VLVSRNADIDVKDVDGQTPLHYAVVCDREGIAEYLVKNNANVSEKDNDGKSPCDICESNW 348

Query: 353 PWMLHAAK 360
           P+M+ A K
Sbjct: 349 PFMVSAKK 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456397|ref|XP_004145936.1| PREDICTED: acyl-CoA-binding domain-containing protein 2-like [Cucumis sativus]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/368 (65%), Positives = 296/368 (80%), Gaps = 20/368 (5%)

Query: 1   MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRS-------NNNNYNEPKRTK 53
           M++WQ  LQ++ IGL+FSYLVAKLIS+V+SFKE+NLS++R+       +N   ++ K  +
Sbjct: 1   MAEWQDFLQTLFIGLIFSYLVAKLISIVVSFKEDNLSLSRATSTPIPQSNEGVSKTKPIE 60

Query: 54  DDVVVAAPNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTEL 113
            D+   +        D G  H+ +S+IAE GSVRN+ S+  SD D   DDDWEGVESTEL
Sbjct: 61  TDIGSGS-------GDFGFAHEADSVIAEHGSVRND-SIGGSDTD---DDDWEGVESTEL 109

Query: 114 DEMFSAATAFVAASAAAS-SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQ 172
           DE+FSAATAFVAASAA   S KVSN+VQLQLY  YKIATEGPCS PQPSALKMTARAKWQ
Sbjct: 110 DELFSAATAFVAASAADRLSPKVSNEVQLQLYGYYKIATEGPCSTPQPSALKMTARAKWQ 169

Query: 173 AWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFA 232
           AWQKLGAMPPEEAMQKYIDIVTEL+P+W AG+S KSK G  DA S DS+ PMGPVFS+F 
Sbjct: 170 AWQKLGAMPPEEAMQKYIDIVTELFPSWVAGASGKSKDGNADARSKDSRGPMGPVFSTFV 229

Query: 233 YEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISE 292
           YEE +GN+L+++ IH FAREG+++NLLKCIENGVSVN++DSEGR PLHWAVDRGH N+ E
Sbjct: 230 YEE-TGNELELEDIHGFAREGELENLLKCIENGVSVNIKDSEGRTPLHWAVDRGHSNVVE 288

Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDW 352
           +LVS+NAD++ KD +GQTPLHYAVVCDRE IA++LVK NA++  KDN+G SPC +CES+W
Sbjct: 289 VLVSRNADIDVKDVDGQTPLHYAVVCDREGIAEYLVKNNANVSEKDNEGKSPCDICESNW 348

Query: 353 PWMLHAAK 360
           P+M+ A K
Sbjct: 349 PFMVSAKK 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570593|ref|XP_002526253.1| acyl-coenzyme A binding domain containing, putative [Ricinus communis] gi|223534418|gb|EEF36122.1| acyl-coenzyme A binding domain containing, putative [Ricinus communis]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/357 (67%), Positives = 289/357 (80%), Gaps = 18/357 (5%)

Query: 3   DWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPN 62
           DW   LQSI +GL+FSYL+AKLIS+V+SFK++NL+I+R          +TK    +A+ N
Sbjct: 4   DWHQFLQSIFLGLIFSYLLAKLISIVVSFKDDNLTISRG---------QTKSTADLASGN 54

Query: 63  PRGPEADSGRPHDTESMIAEQGSVRNEE-SLPCSDVDSDGDDDWEGVESTELDEMFSAAT 121
               +       +TES++AE GSVRNE  +   +D D D DDDWEGVESTELDEMFSAAT
Sbjct: 55  LSTIQ-------ETESVMAEHGSVRNESVAGSGTDNDDDDDDDWEGVESTELDEMFSAAT 107

Query: 122 AFVAASAAAS-SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAM 180
           AFVAA+AA   SQKVS DVQLQLY LYKIATEGPCSAP PSA+KMTARAKWQAWQKLGA+
Sbjct: 108 AFVAAAAADRLSQKVSTDVQLQLYGLYKIATEGPCSAPPPSAIKMTARAKWQAWQKLGAL 167

Query: 181 PPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGND 240
           PPE+AMQKYIDIVTELYP+WA+GS++K K G  D+ STD+K PMGPVFS++ YEEESGN+
Sbjct: 168 PPEDAMQKYIDIVTELYPSWASGSTIKRKGGGGDSQSTDAKGPMGPVFSTYVYEEESGNE 227

Query: 241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD 300
           L+M+AIHAFAREGD+ NLLKCI+ GVSVNL+DSEGR+P+HWAVDRGHLN+ E+LV +N D
Sbjct: 228 LQMEAIHAFAREGDVKNLLKCIDTGVSVNLKDSEGRSPMHWAVDRGHLNVVEVLVGRNTD 287

Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLH 357
           +NAKDNEGQTPLHYA VC+R AIA+FLVKQNAD  +KDNDG S   +CE DWP + H
Sbjct: 288 INAKDNEGQTPLHYAAVCERGAIAEFLVKQNADTNIKDNDGKSANDLCELDWPCLRH 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143930|emb|CBI23035.3| unnamed protein product [Vitis vinifera]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/360 (68%), Positives = 282/360 (78%), Gaps = 16/360 (4%)

Query: 3   DWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPN 62
           +WQ L+QS+  GL+FSYL AKLIS+V+SF++ENLS+TR +         + DD    +  
Sbjct: 4   EWQQLIQSVFFGLVFSYLFAKLISIVISFRDENLSLTRDSKPESQGGAASADDDSAGSQK 63

Query: 63  PRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAATA 122
             G E +       ES++AE+GS  +   L   D        WEGVESTELDE FSAATA
Sbjct: 64  SGGSEGE-------ESLLAEKGSGSSGSLLDDDDD-------WEGVESTELDEEFSAATA 109

Query: 123 FVAASAAAS-SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMP 181
           FVAA+AA   SQKVSNDVQLQLY LYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMP
Sbjct: 110 FVAATAADRLSQKVSNDVQLQLYGLYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMP 169

Query: 182 PEEAMQKYIDIVTELYPTWAAGSSLKSK-RGQEDAASTDSKAPMGPVFSSFAYEEESGND 240
           PEEAMQKYI IVTELYPTWA GS+ KSK  G   A S D+K PMGPVFS+F YEEE G +
Sbjct: 170 PEEAMQKYIAIVTELYPTWATGSTNKSKDEGGSSAPSGDAKGPMGPVFSTFVYEEECGTE 229

Query: 241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD 300
           LKMDAIHAFAREG++DNLLKCI+NGVSV+L+DSEGR PLHWAVDRGHLN++ELL++  AD
Sbjct: 230 LKMDAIHAFAREGEVDNLLKCIDNGVSVDLKDSEGRTPLHWAVDRGHLNLTELLLNHGAD 289

Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAK 360
           VNAKD+EGQ+PLHYAVVC+REAIA+FLVKQNADI   DNDG SP  +CES+WPWM  AAK
Sbjct: 290 VNAKDHEGQSPLHYAVVCEREAIAEFLVKQNADINAMDNDGASPFELCESNWPWMQGAAK 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490812|ref|XP_002271991.2| PREDICTED: glucan endo-1,3-beta-glucosidase 2-like [Vitis vinifera]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/360 (68%), Positives = 284/360 (78%), Gaps = 16/360 (4%)

Query: 3   DWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAAPN 62
           +WQ L+QS+  GL+FSYL AKLIS+V+SF++ENLS+TR +         + DD    +  
Sbjct: 527 EWQQLIQSVFFGLVFSYLFAKLISIVISFRDENLSLTRDSKPESQGGAASADDDSAGSQK 586

Query: 63  PRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAATA 122
             G E +       ES++AE+GS  +           D DDDWEGVESTELDE FSAATA
Sbjct: 587 SGGSEGE-------ESLLAEKGSGSSGSL-------LDDDDDWEGVESTELDEEFSAATA 632

Query: 123 FVAASAAAS-SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMP 181
           FVAA+AA   SQKVSNDVQLQLY LYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMP
Sbjct: 633 FVAATAADRLSQKVSNDVQLQLYGLYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMP 692

Query: 182 PEEAMQKYIDIVTELYPTWAAGSSLKSK-RGQEDAASTDSKAPMGPVFSSFAYEEESGND 240
           PEEAMQKYI IVTELYPTWA GS+ KSK  G   A S D+K PMGPVFS+F YEEE G +
Sbjct: 693 PEEAMQKYIAIVTELYPTWATGSTNKSKDEGGSSAPSGDAKGPMGPVFSTFVYEEECGTE 752

Query: 241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD 300
           LKMDAIHAFAREG++DNLLKCI+NGVSV+L+DSEGR PLHWAVDRGHLN++ELL++  AD
Sbjct: 753 LKMDAIHAFAREGEVDNLLKCIDNGVSVDLKDSEGRTPLHWAVDRGHLNLTELLLNHGAD 812

Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAK 360
           VNAKD+EGQ+PLHYAVVC+REAIA+FLVKQNADI   DNDG SP  +CES+WPWM  AAK
Sbjct: 813 VNAKDHEGQSPLHYAVVCEREAIAEFLVKQNADINAMDNDGASPFELCESNWPWMQGAAK 872

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501756|gb|AFK38944.1| unknown [Medicago truncatula]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/357 (69%), Positives = 286/357 (80%), Gaps = 12/357 (3%)

Query: 3   DWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNN-NNYNEPKRTKDDVVVAAP 61
           DWQ LLQSI IGL+FSYL+AKLIS+V+SF  ENL+ITR+ N N       TK D VV+ P
Sbjct: 6   DWQSLLQSIFIGLIFSYLLAKLISIVVSFNNENLTITRNTNPNAVVSHDDTKQDDVVSDP 65

Query: 62  NPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAAT 121
             R PEA++      ES++AEQGS+R+E        D D DDDWEGVESTELDE FSAAT
Sbjct: 66  GHR-PEAEA------ESVMAEQGSIRSES---VDGGDDDYDDDWEGVESTELDEAFSAAT 115

Query: 122 AFVAASAAAS-SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAM 180
           AFVAA+AA   SQKVSNDVQLQLY LYKIATEGPCS  QPS LKMTARAKWQAW+KLGAM
Sbjct: 116 AFVAAAAADRLSQKVSNDVQLQLYGLYKIATEGPCSTAQPSPLKMTARAKWQAWRKLGAM 175

Query: 181 PPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGND 240
           PPE+AMQKYIDIV+ELYPTW  G+ L+SK G     S++++ PMGPVFSSF YEEE G+D
Sbjct: 176 PPEDAMQKYIDIVSELYPTWLDGAPLRSKTGDGGGPSSEARGPMGPVFSSFVYEEECGSD 235

Query: 241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD 300
            KMDAIH FAREGDM NLLKCIE+GVSVNL+DSEGR PLHWAVDRGHLN++ELLV KNAD
Sbjct: 236 SKMDAIHGFAREGDMTNLLKCIESGVSVNLKDSEGRTPLHWAVDRGHLNVTELLVGKNAD 295

Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLH 357
           VNAKDN+GQTPLHYAV C+REAIA++LVK +ADI  +DNDG+S   +C   WP+M H
Sbjct: 296 VNAKDNDGQTPLHYAVTCEREAIAEYLVKHSADIHSEDNDGSSSRDICSFKWPFMQH 352

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509224|ref|XP_003523351.1| PREDICTED: acyl-CoA-binding domain-containing protein 2-like [Glycine max]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/360 (66%), Positives = 279/360 (77%), Gaps = 19/360 (5%)

Query: 1   MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAA 60
           M++WQ LLQSI +GL+FSYL+AKLIS+V+SFK++NL++TR+         R         
Sbjct: 1   MAEWQSLLQSIFVGLIFSYLLAKLISIVVSFKDDNLTVTRAAAAETTTTTRDDA------ 54

Query: 61  PNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAA 120
                  +   RP + ESM+AE GSVRN+            DDDWEGVESTELDE FSAA
Sbjct: 55  ------VSSDARPFEEESMVAEHGSVRNDSD------GDYDDDDWEGVESTELDEAFSAA 102

Query: 121 TAFVAASAAAS-SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGA 179
           TAFV A+AA   SQKVS+DVQLQLY LYKIATEGPCS PQPS LKMTARAKWQAWQKLGA
Sbjct: 103 TAFVDAAAADRLSQKVSSDVQLQLYGLYKIATEGPCSTPQPSPLKMTARAKWQAWQKLGA 162

Query: 180 MPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGN 239
           MPPE+AMQKYIDIVTE YPTW  GSSL++K G      +++K PMGPVFS+F YEEE G+
Sbjct: 163 MPPEDAMQKYIDIVTETYPTWLDGSSLRNKSGDSGGHGSEAKGPMGPVFSTFVYEEEYGS 222

Query: 240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
           D +M+AIH FAREGDM NLLKCIENGVS+NL+DSEGR PLHWAVDRGHLN++ELLV KNA
Sbjct: 223 DSQMEAIHGFAREGDMANLLKCIENGVSMNLKDSEGRTPLHWAVDRGHLNVTELLVGKNA 282

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAA 359
           DVNAKDN+GQTPLHYAV C+REAIA++L+K NADI  KDNDG+SP  +CES+WP M H  
Sbjct: 283 DVNAKDNDGQTPLHYAVTCEREAIAEYLLKHNADIYSKDNDGSSPRDICESNWPCMQHVG 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234270|ref|NP_194507.1| acyl-CoA binding protein 2 [Arabidopsis thaliana] gi|75313883|sp|Q9STP8.1|ACBP2_ARATH RecName: Full=Acyl-CoA-binding domain-containing protein 2; Short=Acyl-CoA binding protein 2 gi|12039032|gb|AAG46056.1|AF178947_1 acyl-CoA binding protein ACBP2 [Arabidopsis thaliana] gi|13661742|gb|AAK38078.1|AF320561_1 putative membrane-bound acyl-CoA binding protein isoform 2 [Arabidopsis thaliana] gi|4972109|emb|CAB43966.1| putative acyl-CoA binding protein [Arabidopsis thaliana] gi|7269631|emb|CAB81427.1| putative acyl-CoA binding protein [Arabidopsis thaliana] gi|19699102|gb|AAL90917.1| AT4g27780/T27E11_20 [Arabidopsis thaliana] gi|21594802|gb|AAM66045.1| putative acyl-CoA binding protein [Arabidopsis thaliana] gi|21689607|gb|AAM67425.1| AT4g27780/T27E11_20 [Arabidopsis thaliana] gi|332659991|gb|AEE85391.1| acyl-CoA binding protein 2 [Arabidopsis thaliana]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/364 (64%), Positives = 283/364 (77%), Gaps = 11/364 (3%)

Query: 1   MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAA 60
           M DW  L QS+++GL+FSYL+AKLIS+V++FKE+NLS+TR    +  E K    D     
Sbjct: 1   MGDWAQLAQSVILGLIFSYLLAKLISIVVTFKEDNLSLTRHPEESQLEIKPEGVD----- 55

Query: 61  PNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAA 120
            + R   +  G   + +S++AEQGS R++     +  DS+ DDDWEGVESTELDE FSAA
Sbjct: 56  -SRRLDSSCGGFGGEADSLVAEQGSSRSDS---VAGDDSEEDDDWEGVESTELDEAFSAA 111

Query: 121 TAFVAASAAAS-SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGA 179
           T FV  +AA   SQKV +DVQ QLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGA
Sbjct: 112 TLFVTTAAADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGA 171

Query: 180 MPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGN 239
           MPPEEAM+KYI+IVT+LYPTW  G      RG +DAAS +S+  MGPVFSS  Y+EES N
Sbjct: 172 MPPEEAMEKYIEIVTQLYPTWLDGGVKAGSRGGDDAAS-NSRGTMGPVFSSLVYDEESEN 230

Query: 240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
           +LK+DAIH FAREG+++NLLK IE+G+ VN RDSEGR PLHWA+DRGHLNI+++LV KNA
Sbjct: 231 ELKIDAIHGFAREGEVENLLKSIESGIPVNARDSEGRTPLHWAIDRGHLNIAKVLVDKNA 290

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAA 359
           DVNAKDNEGQTPLHYAVVCDREAIA+FLVKQNA+   KD DGNSP  +CESDWPW+  +A
Sbjct: 291 DVNAKDNEGQTPLHYAVVCDREAIAEFLVKQNANTAAKDEDGNSPLDLCESDWPWIRDSA 350

Query: 360 KGTD 363
           K  D
Sbjct: 351 KQAD 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132714|ref|XP_002321391.1| predicted protein [Populus trichocarpa] gi|222868387|gb|EEF05518.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/354 (68%), Positives = 277/354 (78%), Gaps = 9/354 (2%)

Query: 1   MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAA 60
           M+DWQ LLQSI IGLLFSYL+AKLIS+V+SF+ +NL ITR+       PK   +D   A 
Sbjct: 1   MADWQHLLQSIFIGLLFSYLLAKLISIVVSFQNDNLHITRN-------PKPQSNDPDPAP 53

Query: 61  PNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAA 120
                         D +S++AEQGSVRNE          D DDDWEGVESTELDEMFSAA
Sbjct: 54  APAPAVHHYQHSHGDVDSVVAEQGSVRNESVSGSDGGGDDDDDDWEGVESTELDEMFSAA 113

Query: 121 TAFVAASAA-ASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGA 179
           TAFVAA+AA   S KVS+D+QLQLY  YKIATEGPC++  PSALKMTARAKWQAWQKLGA
Sbjct: 114 TAFVAAAAADRVSLKVSSDLQLQLYGYYKIATEGPCTSAPPSALKMTARAKWQAWQKLGA 173

Query: 180 MPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGN 239
           MPPE+AMQKYIDI+TELYPTWA+GS++   R      S D K PMGPVFS+F YEEESG 
Sbjct: 174 MPPEDAMQKYIDIITELYPTWASGSAMSKDRDGV-GPSKDGKGPMGPVFSTFVYEEESGT 232

Query: 240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
           +LKMDAIHAFAREG+++NL+KCI+ GVSVNL+DSEGR PLHWAVDRGHLNI+E+LV KNA
Sbjct: 233 ELKMDAIHAFAREGEVNNLIKCIDGGVSVNLKDSEGRTPLHWAVDRGHLNIAEVLVGKNA 292

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWP 353
           D+NAKDNEGQTPLHYA VC+REAIA++LVKQNAD   KDNDG S   +CESDWP
Sbjct: 293 DINAKDNEGQTPLHYAAVCEREAIAEYLVKQNADTDAKDNDGQSAHDLCESDWP 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518645|ref|XP_003527989.1| PREDICTED: acyl-CoA-binding domain-containing protein 2-like [Glycine max]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/345 (67%), Positives = 275/345 (79%), Gaps = 11/345 (3%)

Query: 1   MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAA 60
           M++WQ LLQSIL+GL+FSYL+AKLIS+V+SFK++NL++TR++     E   T+ +    A
Sbjct: 1   MAEWQSLLQSILVGLIFSYLLAKLISIVVSFKDDNLTVTRASAA---ETTATRAEQFEDA 57

Query: 61  PNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCSDVDSDGDDDWEGVESTELDEMFSAA 120
                  +   RP + ES++AE GSVR +      D        WEGVESTELDE FSAA
Sbjct: 58  LKRDDAVSSDARPFEEESVVAEHGSVRIDSDGDYDDD-------WEGVESTELDEAFSAA 110

Query: 121 TAFVAASAAAS-SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGA 179
           TAFVAA+AA   SQKVS+DVQLQLY LYKIATEGPCS PQPS LKMTARAKWQAWQKLGA
Sbjct: 111 TAFVAAAAADRLSQKVSSDVQLQLYGLYKIATEGPCSTPQPSPLKMTARAKWQAWQKLGA 170

Query: 180 MPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGN 239
           MPPE+AMQKYIDIVTE+YPTW  GSSL++K G      +++K PMGPVFS+F YEEE G+
Sbjct: 171 MPPEDAMQKYIDIVTEIYPTWLDGSSLRNKSGDSGGHGSEAKGPMGPVFSTFVYEEEYGS 230

Query: 240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
           D +M+AIH FAREGDM NLLKCIENGVS+NL+DSEGR PLHWAVDRGHLN++ELLV KNA
Sbjct: 231 DSQMEAIHGFAREGDMANLLKCIENGVSMNLKDSEGRTPLHWAVDRGHLNVTELLVGKNA 290

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
           DVNAKDN+GQTPLHYAV C+REAIA++LVK NADI  KDNDG+SP
Sbjct: 291 DVNAKDNDGQTPLHYAVTCEREAIAEYLVKHNADIYSKDNDGSSP 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	363
TAIR|locus:2178426	338	ACBP1 "acyl-CoA binding protei	0.774	0.831	0.637	2.1e-113
TAIR|locus:2137380	354	ACBP2 "AT4G27780" [Arabidopsis	0.972	0.997	0.596	2.3e-110
UNIPROTKB|F1S683	282	ACBD6 "Uncharacterized protein	0.567	0.730	0.402	3.9e-37
UNIPROTKB|Q9BR61	282	ACBD6 "Acyl-CoA-binding domain	0.559	0.719	0.408	4.9e-37
UNIPROTKB|A2VDR2	282	ACBD6 "Acyl-CoA-binding domain	0.559	0.719	0.408	2.1e-36
RGD|1305030	282	Acbd6 "acyl-CoA binding domain	0.559	0.719	0.389	1.9e-35
UNIPROTKB|F1PLQ8	282	ACBD6 "Uncharacterized protein	0.559	0.719	0.403	2.4e-35
ZFIN|ZDB-GENE-030131-2810	300	acbd6 "acyl-Coenzyme A binding	0.575	0.696	0.397	4e-35
MGI|MGI:1919732	282	Acbd6 "acyl-Coenzyme A binding	0.559	0.719	0.380	1.1e-34
UNIPROTKB|E1C483	268	ACBD6 "Uncharacterized protein	0.564	0.764	0.386	1.3e-34

TAIR|locus:2178426 ACBP1 "acyl-CoA binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
 Identities = 188/295 (63%), Positives = 216/295 (73%)

Query:    62 NPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDEMFXXXX 121
             N R  E  +G   +T+S+IAEQGS+R +E                   STELDE F    
Sbjct:    50 NLRKVETLTGISGETDSLIAEQGSLRGDED-------ESDDDDWEGVESTELDEAFSAAT 102

Query:   122 XXXXXXXXXX-XQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAM 180
                         QKVSN++QLQLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGAM
Sbjct:   103 AFVAAAASDRLSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAM 162

Query:   181 PPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGND 240
             PPEEAM+KYID+VT+LYP W  G S +  R  E A       PMGPVFSS  YEEES N+
Sbjct:   163 PPEEAMEKYIDLVTQLYPAWVEGGSKRRNRSGEAAG------PMGPVFSSLVYEEESDNE 216

Query:   241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD 300
             LK+DAIHAFAREG+++NLLKCIENG+ VN RDSEGR PLHWA+DRGHLN++E LV KNAD
Sbjct:   217 LKIDAIHAFAREGEVENLLKCIENGIPVNARDSEGRTPLHWAIDRGHLNVAEALVDKNAD 276

Query:   301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWM 355
             VNAKDNEGQT LHYAVVC+REA+A+FLVKQ AD  +KD DGNSP  +CES+W WM
Sbjct:   277 VNAKDNEGQTSLHYAVVCEREALAEFLVKQKADTTIKDEDGNSPLDLCESEWSWM 331

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0010288 "response to lead ion" evidence=IEP;IMP

GO:0032791 "lead ion binding" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0070300 "phosphatidic acid binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008289 "lipid binding" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010162 "seed dormancy process" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

TAIR|locus:2137380 ACBP2 "AT4G27780" [Arabidopsis thaliana (taxid:3702)]

 Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
 Identities = 217/364 (59%), Positives = 261/364 (71%)

Query:     1 MSDWQPLLQSILIGLLFSYLVAKLISVVLSFKEENLSITRSNNNNYNEPKRTKDDVVVAA 60
             M DW  L QS+++GL+FSYL+AKLIS+V++FKE+NLS+TR    +  E K    D     
Sbjct:     1 MGDWAQLAQSVILGLIFSYLLAKLISIVVTFKEDNLSLTRHPEESQLEIKPEGVD----- 55

Query:    61 PNPRGPEADSGRPHDTESMIAEQGSVRNEESLPCXXXXXXXXXXXXXXXSTELDEMFXXX 120
              + R   +  G   + +S++AEQGS R++                    STELDE F   
Sbjct:    56 -SRRLDSSCGGFGGEADSLVAEQGSSRSDS---VAGDDSEEDDDWEGVESTELDEAFSAA 111

Query:   121 XXXXXXXXXXX-XQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGA 179
                          QKV +DVQ QLY LYKIATEGPC+APQPSALKMTARAKWQAWQKLGA
Sbjct:   112 TLFVTTAAADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGA 171

Query:   180 MPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGN 239
             MPPEEAM+KYI+IVT+LYPTW  G      RG +DAAS +S+  MGPVFSS  Y+EES N
Sbjct:   172 MPPEEAMEKYIEIVTQLYPTWLDGGVKAGSRGGDDAAS-NSRGTMGPVFSSLVYDEESEN 230

Query:   240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
             +LK+DAIH FAREG+++NLLK IE+G+ VN RDSEGR PLHWA+DRGHLNI+++LV KNA
Sbjct:   231 ELKIDAIHGFAREGEVENLLKSIESGIPVNARDSEGRTPLHWAIDRGHLNIAKVLVDKNA 290

Query:   300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAA 359
             DVNAKDNEGQTPLHYAVVCDREAIA+FLVKQNA+   KD DGNSP  +CESDWPW+  +A
Sbjct:   291 DVNAKDNEGQTPLHYAVVCDREAIAEFLVKQNANTAAKDEDGNSPLDLCESDWPWIRDSA 350

Query:   360 KGTD 363
             K  D
Sbjct:   351 KQAD 354

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA;TAS

GO:0009514 "glyoxysome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010288 "response to lead ion" evidence=IEP

GO:0032791 "lead ion binding" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

UNIPROTKB|F1S683 ACBD6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 87/216 (40%), Positives = 123/216 (56%)

Query:   133 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI 192
             Q  S +  L LYA YK    G C+ P+PS      + KW+AW+ LG   P +AMQ+YI +
Sbjct:    58 QVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAV 117

Query:   193 VTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFARE 252
             V +L P W     L  K+G+E           GPV SS  +EE    + K   I  + RE
Sbjct:   118 VKKLDPDW--NPQLPEKKGKETNTGFG-----GPVVSSLYHEEIIREEDKN--IFDYCRE 168

Query:   253 GDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
              ++D++ K I++  V VN++D EGRA LHWA DRGH ++  +L+   AD+N++DNEGQT 
Sbjct:   169 NNIDHITKVIKSKNVDVNMKDEEGRALLHWACDRGHKDLVTVLLQYRADINSQDNEGQTA 228

Query:   312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             LHYA  C+   I + L++  AD  ++D DG  P  V
Sbjct:   229 LHYAAACEFLDIVELLLQAGADATLRDQDGCLPQEV 264

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|Q9BR61 ACBD6 "Acyl-CoA-binding domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 87/213 (40%), Positives = 123/213 (57%)

Query:   133 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI 192
             Q  S +  L LYA YK    G C+ P+PS      + KW+AW+ LG   P +AMQ+YI +
Sbjct:    58 QVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAV 117

Query:   193 VTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFARE 252
             V +L P W     +  K+G+E  A+T      GPV SS  +EE    + K   I  + RE
Sbjct:   118 VKKLDPGW--NPQIPEKKGKE--ANTGFG---GPVISSLYHEETIREEDKN--IFDYCRE 168

Query:   253 GDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
              ++D++ K I++  V VN++D EGRA LHWA DRGH  +  +L+   AD+N +DNEGQT 
Sbjct:   169 NNIDHITKAIKSKNVDVNVKDEEGRALLHWACDRGHKELVTVLLQHRADINCQDNEGQTA 228

Query:   312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
             LHYA  C+   I + L++  AD  ++D DG  P
Sbjct:   229 LHYASACEFLDIVELLLQSGADPTLRDQDGCLP 261

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|A2VDR2 ACBD6 "Acyl-CoA-binding domain-containing protein 6" [Bos taurus (taxid:9913)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 87/213 (40%), Positives = 122/213 (57%)

Query:   133 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI 192
             Q  S +  L LYA YK    G C+ P+PS      + KW+AW+ LG   P +AMQ+YI +
Sbjct:    58 QVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAV 117

Query:   193 VTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFARE 252
             V +L P+W   S    K+G+E  A+T      GPV SS  Y EE   +   D I  + RE
Sbjct:   118 VKKLDPSWNPQSP--EKKGKE--ANTGFG---GPVVSSL-YHEEIIREEDKD-IFDYCRE 168

Query:   253 GDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
              ++D++ K I+   + VN++D EGR  LHWA DRGH  +  +L+   AD+N +DNEGQT 
Sbjct:   169 NNIDHITKVIKTKNMDVNMKDEEGRTLLHWACDRGHKELVTVLLQYRADINCQDNEGQTA 228

Query:   312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
             LHYA  C+   I + L++  AD  ++D DG  P
Sbjct:   229 LHYAAACEFLDIVELLLQSGADPTLRDQDGCLP 261

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

RGD|1305030 Acbd6 "acyl-CoA binding domain containing 6" [Rattus norvegicus (taxid:10116)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 83/213 (38%), Positives = 120/213 (56%)

Query:   133 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI 192
             Q  S +  L LYA YK    G C+ P+P+      + KW+AW+ LG   P +AMQ+YI  
Sbjct:    58 QVASREQLLYLYARYKQVKVGNCNIPKPNFFDFEGKQKWEAWKALGDSSPSQAMQEYIAA 117

Query:   193 VTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFARE 252
             V +L P W     +  K+G+E ++        GPV SS  +EE    + K   I  + RE
Sbjct:   118 VKKLDPGW--NPQVSEKKGKEGSSGFG-----GPVVSSLYHEETIREEDKN--IFDYCRE 168

Query:   253 GDMDNLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
              ++D++ K I++  V VN+ D EGRA LHWA DRGH  + ++L+   A +N +DNEGQT 
Sbjct:   169 NNIDHITKAIKSKTVDVNMTDEEGRALLHWACDRGHKELVKVLLQCEAGINCQDNEGQTA 228

Query:   312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
             LHYA  C+   I + L++  AD  ++D DG  P
Sbjct:   229 LHYAAACEFSDIVELLLQSGADPTLRDQDGCLP 261

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008289 "lipid binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1PLQ8 ACBD6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 86/213 (40%), Positives = 121/213 (56%)

Query:   133 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI 192
             Q  S +  L LYA YK    G C+ P+PS      + KW+AW+ LG   P +AMQ+YI +
Sbjct:    58 QVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAV 117

Query:   193 VTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFARE 252
             V +L P W   S    K+G+E  A+T      GPV SS  +EE    + K   I  + RE
Sbjct:   118 VKKLDPGWNPQSP--EKKGKE--ANTGFG---GPVVSSLYHEEIIREEDKN--IFDYCRE 168

Query:   253 GDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
              ++D++ K I +  V VN++D EGR  LHWA DRGH  +  +L+   AD+N +D+EGQT 
Sbjct:   169 NNIDHVTKVIRSKNVDVNMKDEEGRTLLHWACDRGHKELVTVLLRYKADINCQDDEGQTA 228

Query:   312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
             LHYA  C+   I + L++  AD  ++D DG  P
Sbjct:   229 LHYAAACEFLDIVELLLQSGADPTLRDQDGCLP 261

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

ZFIN|ZDB-GENE-030131-2810 acbd6 "acyl-Coenzyme A binding domain containing 6" [Danio rerio (taxid:7955)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 87/219 (39%), Positives = 122/219 (55%)

Query:   133 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI 192
             Q  S +  L LYA +K    G C+  +P       + KW AW++LG M  E+AMQ+Y+  
Sbjct:    76 QTASREQLLYLYARFKQVKVGKCNTSKPGFFDFEGQRKWSAWKQLGDMSAEQAMQEYVTC 135

Query:   193 VTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFARE 252
             V  L P  +  SS   +RG E           GP  SS  Y+EE   +   + I  + RE
Sbjct:   136 VHALDPEGSQKSS--ERRGGEKRTGFG-----GPAVSSL-YQEEKIREEDKN-IFDYCRE 186

Query:   253 GDMDNLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
              +++++ K I +  V VN RD EGRA LHWA DRGH ++  LL+  NAD+N++D+EGQT 
Sbjct:   187 NNIEHVSKAISSKTVDVNTRDEEGRALLHWACDRGHKDLVSLLLQNNADINSQDDEGQTA 246

Query:   312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
             LHYA  C+   I + L+K  AD  +KD +G+ P  V ES
Sbjct:   247 LHYASACEFAEIVELLLKAGADPSIKDQEGSLPEEVTES 285

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

MGI|MGI:1919732 Acbd6 "acyl-Coenzyme A binding domain containing 6" [Mus musculus (taxid:10090)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 81/213 (38%), Positives = 119/213 (55%)

Query:   133 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI 192
             Q  S +  L LYA +K    G C+ P+P+      + KW+AW+ LG   P +AMQ+YI  
Sbjct:    58 QVASREQLLYLYARFKQVKVGNCNTPKPNFFDFEGKQKWEAWKALGDSSPSQAMQEYIAA 117

Query:   193 VTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFARE 252
             V +L P W     +  K+G+E ++        GPV SS  +EE    + K   I  + RE
Sbjct:   118 VKKLDPGW--NPQVSEKKGKEGSSGFG-----GPVVSSLYHEETIREEDKN--IFDYCRE 168

Query:   253 GDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
              ++D++ K I++    VN+ D EGRA LHWA DRGH  + ++L+   A +N +DNEGQT 
Sbjct:   169 NNIDHIAKAIKSKAADVNMTDEEGRALLHWACDRGHKELVKVLLQYEAGINCQDNEGQTA 228

Query:   312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
             LHYA  C+   I + L++  AD  ++D DG  P
Sbjct:   229 LHYAAACEFLDIVELLLQSGADPTLRDQDGCLP 261

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008289 "lipid binding" evidence=IEA

UNIPROTKB|E1C483 ACBD6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 83/215 (38%), Positives = 122/215 (56%)

Query:   136 SNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTE 195
             S +  L LYA YK    G C+ P+P       + KW+AW+ LG   P +AMQ+Y+  V +
Sbjct:    47 SKEQLLYLYARYKQVKFGTCNTPKPGFFDFEGKQKWEAWKALGDTSPHQAMQEYVATVKK 106

Query:   196 LYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDM 255
             L P+W   ++   KRG+E   +       GPV SS  Y+EE+  +   + I  + RE ++
Sbjct:   107 LDPSWNPQTT--EKRGKESKTAFG-----GPVVSSL-YQEETIREEDKN-IFDYCRENNI 157

Query:   256 DNLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY 314
             D + K I++  V VN+ D EGRA LHWA DRGH  +  +L+   ADVN++D EGQT LHY
Sbjct:   158 DYVTKAIQSKKVDVNVADEEGRALLHWACDRGHKELVSVLLQHAADVNSQDGEGQTALHY 217

Query:   315 AVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
             A  C+   I + L++  AD  ++D +G  P  V +
Sbjct:   218 ASACEFSDIVELLLQSGADPTLRDKEGCLPEEVTD 252

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STP8	ACBP2_ARATH	No assigned EC number	0.6483	0.9724	0.9971	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	363
pfam00887	87	pfam00887, ACBP, Acyl CoA binding protein	3e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-26
cd00435	85	cd00435, ACBP, Acyl CoA binding protein (ACBP) bin	2e-23
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-21
PTZ00458	90	PTZ00458, PTZ00458, acyl CoA binding protein; Prov	1e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-15
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-13
COG4281	87	COG4281, ACB, Acyl-CoA-binding protein [Lipid meta	6e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-11
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	7e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-10
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	5e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	1e-05
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	1e-05
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	1e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-05
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	3e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-05
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	4e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-05
smart00248	30	smart00248, ANK, ankyrin repeats	7e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	9e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.001
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.004

>gnl|CDD|216174 pfam00887, ACBP, Acyl CoA binding protein

 Score =  115 bits (291), Expect = 3e-32
 Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQ 172
           L+E F AA  FV         + SN+ +L+LYALYK ATEG  + P+P    +  +AKW 
Sbjct: 1   LEEEFEAAVKFV--KKLPKDGRPSNEEKLKLYALYKQATEGDVNTPRPGMFDVIGKAKWD 58

Query: 173 AWQKLGAMPPEEAMQKYIDIVTELYPTWA 201
           AW+KL  M  EEAM+KY+++V EL   + 
Sbjct: 59  AWKKLKGMSKEEAMKKYVELVEELVEKYG 87

Length = 87

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  115 bits (289), Expect = 2e-31
 Identities = 43/110 (39%), Positives = 64/110 (58%)

Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
           ++     +H  A  G ++ +   +ENG  VN +D++GR PLH A   GHL I +LL+ K 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           ADVNA+D +G TPLH A       + + L+K  AD+  +D DG +P H+ 
Sbjct: 64  ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  100 bits (252), Expect = 3e-26
 Identities = 38/80 (47%), Positives = 52/80 (65%)

Query: 269 NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV 328
           N RD +GR PLH A   GHL + +LL+   ADVNAKDN+G+TPLH A       I + L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 329 KQNADIGMKDNDGNSPCHVC 348
           ++ AD+  +D DGN+P H+ 
Sbjct: 61  EKGADVNARDKDGNTPLHLA 80

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238248 cd00435, ACBP, Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity

 Score = 92.0 bits (229), Expect = 2e-23
 Identities = 38/89 (42%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQ 172
           L E F AA   V         K SN+ +LQLY+LYK AT G C+  +P    +  RAKW 
Sbjct: 1   LQEEFEAAAEKVKKLKT----KPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWD 56

Query: 173 AWQKLGAMPPEEAMQKYIDIVTELYPTWA 201
           AW  L  M  E+AM+ YI  V EL   +A
Sbjct: 57  AWNSLKGMSKEDAMKAYIAKVEELIAKYA 85

Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected. Length = 85

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 88.5 bits (220), Expect = 6e-22
 Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  A+ G+++ +   +E G  VNL D++    LH A   G+L I +LL+   ADVNAKD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD 338
            +G T LH A       I + L++  ADI +KD
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.4 bits (217), Expect = 4e-21
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
            +H  A+ G ++ +   +E G  VN RD +G  PLH A   G+L++ +LL+   ADVNA+
Sbjct: 43  PLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR 102

Query: 305 DNEGQTPLHYAVVCDREAIAQFLV 328
           D +G+TPLH A       + + L+
Sbjct: 103 DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|185637 PTZ00458, PTZ00458, acyl CoA binding protein; Provisional

 Score = 74.1 bits (182), Expect = 1e-16
 Identities = 28/86 (32%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 115 EMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAW 174
           ++F    +F+  ++   +  +S +++L LY  YK +T G C+  +PS  K   R K++AW
Sbjct: 3   DLFEECVSFI--NSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAW 60

Query: 175 QKLGAMPPEEAMQKYIDIVTELYPTW 200
           + +  +  E+A ++Y++IVTEL+P W
Sbjct: 61  KSIENLNREDAKKRYVEIVTELFPNW 86

Length = 90

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 69.6 bits (171), Expect = 5e-15
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 279 LHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD 338
           LH A   G+L + +LL+ K ADVN  D +  T LH A       I + L++  AD+  KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 339 NDGNSPCHVC 348
            DGN+  H+ 
Sbjct: 59  KDGNTALHLA 68

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGH--LNISELLVSKNADVNAK--------------- 304
           ++NG +VN+++S+G   LH  ++     L I +LL+ K  D+NAK               
Sbjct: 128 LDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINI 187

Query: 305 -DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            D  G TPLHYAV  +     ++L+   A+  + +  G++P H+ 
Sbjct: 188 KDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA 232

Length = 422

>gnl|CDD|226731 COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism]

 Score = 63.7 bits (155), Expect = 6e-13
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query: 132 SQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYID 191
           S+K SND  L+LYAL+K  + G     +P    +  R K++AW  L     E+A Q+YI 
Sbjct: 17  SEKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIA 76

Query: 192 IVTEL 196
           +V EL
Sbjct: 77  LVEEL 81

Length = 87

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 68.5 bits (167), Expect = 1e-12
 Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 252 EGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
           E DM   +  ++ G+ VN++D+E +  LH+A+ +G L   ++L    ADVN +D+ G  P
Sbjct: 103 EKDMIKTI--LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYP 160

Query: 312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           +H A+  +   I + L+++ A   +KDN+G SP H
Sbjct: 161 IHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLH 195

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 254 DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGH---LNISELLVSKNADVNAKDNEGQT 310
            ++ + + +  G  VN R   G+ PLH  +        +I  LL+   ADVNA +  G T
Sbjct: 26  TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85

Query: 311 PLH-YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           PLH Y        + + L+K  AD+  KD  G +P HV 
Sbjct: 86  PLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY 124

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 64.1 bits (155), Expect = 8e-12
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 231 FAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN- 289
                 + +      +H+ A +GD   +   + +G  VN +D++G  PLH A   G+   
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE 121

Query: 290 ----ISELLVSKNA---DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGN 342
               +++LL+   A     N +D +G TPLH+A +     I + L++  AD   +++ G 
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGV 181

Query: 343 SPCH 346
           +   
Sbjct: 182 TALD 185

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.0 bits (158), Expect = 1e-11
 Identities = 33/101 (32%), Positives = 52/101 (51%)

Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H   ++GD++++    E G  VN+ D  G  P+H A+     +I +LL+ K A  N KD
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD 187

Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           N G++PLH A      A  + L+     I  K  +G +P H
Sbjct: 188 NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLH 228

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 63.4 bits (154), Expect = 4e-11
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           IH   +    D +   +E G   N++D+ G +PLH A + G     +LL+     +  K 
Sbjct: 161 IHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKC 220

Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
             G TPLH A++ +R AI   L+  NA I  +D DG++P H
Sbjct: 221 KNGFTPLHNAIIHNRSAIE--LLINNASINDQDIDGSTPLH 259

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 62.8 bits (153), Expect = 7e-11
 Identities = 22/78 (28%), Positives = 38/78 (48%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +  GV +N++D  G  PLH+AV   +    + L+   A+ N  +  G TPLH A++ + +
Sbjct: 179 LSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNK 238

Query: 322 AIAQFLVKQNADIGMKDN 339
            I + L+     I     
Sbjct: 239 EIFKLLLNNGPSIKTIIE 256

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGH-LNISELLVSKNADVNAKDNEGQTPLH-Y-AVVC 318
           +E G  VN  +  G  PLH  +     L++ +LL+   ADVNAKD  G+TPLH Y +   
Sbjct: 70  LEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFN 129

Query: 319 DREAIAQFLVKQNADIGMKDNDGNSPCHV 347
               + + L+++ AD+   D  G +P  V
Sbjct: 130 INPKVIRLLLRKGADVNALDLYGMTPLAV 158

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 60.6 bits (146), Expect = 1e-10
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 12/119 (10%)

Query: 236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLV 295
           +    L++  + A +    +  L+           RD +GR PLH A  +G   I +LL+
Sbjct: 38  KLNLYLELALLPAASLSELLLKLIVDRHL----AARDLDGRLPLHSAASKGDDKIVKLLL 93

Query: 296 SKNADVNAKDNEGQTPLHYAVVCDRE-----AIAQFLVKQNA---DIGMKDNDGNSPCH 346
           +  ADVNAKD +G TPLH A +          +A+ L++  A      ++D DGN+P H
Sbjct: 94  ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 262 IENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA 315
           +E+G + +N  D  G  PLH A   G L + + L+    D+N +D++G T L  A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV 328
           GR  LH A   G L + + L+ K  D+N  D +G T LH A       + + L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDR--GHLNISELLVSKNADVNAKDNEGQTPLHYAV-VC 318
           +E G +VN  D+ G  PL +A+ +     +I E L+   A+VN K+++G+  LH  +   
Sbjct: 93  LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN 152

Query: 319 DRE-AIAQFLVKQNADIGMKDN 339
             +  I + L+ +  DI  K+ 
Sbjct: 153 KIDLKILKLLIDKGVDINAKNR 174

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLV 295
             A+H  A  G ++ +   +E GV +N  D +G   LH A + G+L + +LL+
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 262 IENGVSVNLRD-SEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
           +  G  +N++D  +G   LH+A +     ++ELL+S  A+VN  D    +PLH+AV    
Sbjct: 154 LSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYN 213

Query: 321 EAIAQFLVKQNADIGMKDNDGNSPCHV 347
           + I   L++  A    +D  GN+P H+
Sbjct: 214 KPIVHILLENGASTDARDKCGNTPLHI 240

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 5/104 (4%)

Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  A  GD   +   I++G  +  +   G  PLH A+     +  ELL++ NA +N +D
Sbjct: 194 LHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN-NASINDQD 251

Query: 306 NEGQTPLHYAV--VCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            +G TPLH+A+   CD + I   L+   ADI +KDN G +P   
Sbjct: 252 IDGSTPLHHAINPPCDID-IIDILLYHKADISIKDNKGENPIDT 294

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISEL--LVSKNADVNAKDNEGQTPLHYAVVCD 319
           I  G      D  G  PLH          S +  L+     +NA++  GQTPLHYA V +
Sbjct: 209 IRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFN 268

Query: 320 REAIAQFLVKQNADIGMKDNDGNSP 344
                + L+   ADI    +DGN+P
Sbjct: 269 NPRACRRLIALGADINAVSSDGNTP 293

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNIS--ELLVSKN 298
           L   A  +  +   +  L   +  G+S+N R+  G+ PLH+A      N      L++  
Sbjct: 226 LHSMATGSSCKRSLVLPL---LIAGISINARNRYGQTPLHYAA--VFNNPRACRRLIALG 280

Query: 299 ADVNAKDNEGQTPLHYAVV-CDREAIAQFLVKQ 330
           AD+NA  ++G TPL   V   +  A+   L K 
Sbjct: 281 ADINAVSSDGNTPLSLMVRNNNGRAVRAALAKN 313

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 12/122 (9%)

Query: 234 EEESGNDLKMDAIHAFAR----EGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN 289
             +         +H +         +  LL  +  G  VN  D  G  PL   +   + N
Sbjct: 111 NAKDKVG--RTPLHVYLSGFNINPKVIRLL--LRKGADVNALDLYGMTPLAVLLKSRNAN 166

Query: 290 IS--ELLVSKNADVNAKDNEGQTPLHY-AVVC-DREAIAQFLVKQNADIGMKDNDGNSPC 345
           +    LL+   ADV A D+  ++ LH+       R  I + L++   D    D  GN+P 
Sbjct: 167 VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL 226

Query: 346 HV 347
           H 
Sbjct: 227 HS 228

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGH-----LNISELLVSKNADVNAKDNEGQTPLHYAV 316
           ++NG  +N        PLH+  +  +       I +LL+   A+VNA DN G TPL YA+
Sbjct: 55  LDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAI 114

Query: 317 ---VCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
                    I ++L+   A++ +K++DG +  H+
Sbjct: 115 SKKSNSYS-IVEYLLDNGANVNIKNSDGENLLHL 147

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 26/78 (33%), Positives = 35/78 (44%)

Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
           A  GD       +  G   N RD +GR PLH A   GH+ +  +L+   AD    D +G+
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149

Query: 310 TPLHYAVVCDREAIAQFL 327
           TPL  A       + Q L
Sbjct: 150 TPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.5 bits (114), Expect = 7e-08
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDN 306
           +G  PLH A   GHL + +LL+   ADVNA+D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
             D+NA D  G TPLH A       + Q+L+K   D+ ++D+DG +   
Sbjct: 6   PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 15/107 (14%)

Query: 255 MDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY 314
              LL+   +    NLRD +G  PLHWA   G  +I ELL+   AD N++++ G T L  
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Query: 315 AVVCDREAIAQFLVK---------------QNADIGMKDNDGNSPCH 346
           A    R  + + L+                 NA++  ++    +   
Sbjct: 187 AAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLI 233

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 237 SGNDLKMDAIHAFAREGDMDNLL-KCIENGVSVNLRDSEGRAPLHWAVDRGH--LNISEL 293
           S +D K   +H  ++   +  L+ K +E G  VN ++ +G  PL+     G+   NI   
Sbjct: 268 SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENI-RT 326

Query: 294 LVSKNADVNAKDNEGQTPLHYAVVCDR-EAIAQFLVKQNADIGMKDNDGNSPCH 346
           L+   ADVNA D    TPLH A   DR + I   L++  A++  +D    +P H
Sbjct: 327 LIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIH 380

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 257 NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV 316
           N+   I      +    +   PL+ A +  ++++ ++L+   AD+N+      TPLHY  
Sbjct: 17  NIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLS 76

Query: 317 V------CDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
                    +E I + L++  A++   DN+G +P    
Sbjct: 77  NIKYNLTDVKE-IVKLLLEYGANVNAPDNNGITPLLYA 113

Length = 422

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 22/112 (19%)

Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAV----DRGH-LNISEL 293
           +    D +  F            I  G +VN  D+E   PL   +    D  H L+I ++
Sbjct: 47  DSPSTDIVKLF------------INLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKI 94

Query: 294 LVSKNADVNAKDNEGQTP----LHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
           L+   AD+N K+++G+TP    L    + + E +  F+++  AD  + D DG
Sbjct: 95  LIENGADINKKNSDGETPLYCLLSNGYINNLEILL-FMIENGADTTLLDKDG 145

Length = 489

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 239 NDLKM-DAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN-ISELLVS 296
           NDL +  AI    R  D++  L   + G SVN  D     PLH A     L+ +   L+ 
Sbjct: 240 NDLSLLKAI----RNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLE 295

Query: 297 KNADVNAKDNEGQTPLHYAVV--CDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           + ADVNAK+ +G+TPL+       D E I + L+   AD+   D    +P H
Sbjct: 296 RGADVNAKNIKGETPLYLMAKNGYDTENI-RTLIMLGADVNAADRLYITPLH 346

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 307 EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDN 339
           +G TPLH A       + + L++  AD+  +D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 236 ESGNDLKM-------DAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHL 288
             G D+ M        A+H      D       +  G +VN+ D    +PLH AV   + 
Sbjct: 155 SYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNK 214

Query: 289 NISELLVSKNADVNAKDNEGQTPLHYAV-VCDREAIAQFLVKQNADIGMKDN-DGNSPCH 346
            I  +L+   A  +A+D  G TPLH +V  C    I + L++   D+  K    G +  H
Sbjct: 215 PIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH 274

Query: 347 V 347
            
Sbjct: 275 S 275

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
           +L++  AD N +D +G+TPLH A       + + L++  AD  + D DG +P  + E
Sbjct: 100 ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE 156

Length = 664

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 11/65 (16%)

Query: 288 LNISELLVSKNADVNAKDNEGQTPL--------HYAVVCDREAIAQFLVKQNADIGMKDN 339
            +I +L ++  A+VN  DNE  TPL         Y  + D   I + L++  ADI  K++
Sbjct: 51  TDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLD---IVKILIENGADINKKNS 107

Query: 340 DGNSP 344
           DG +P
Sbjct: 108 DGETP 112

Length = 489

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 8/119 (6%)

Query: 235 EESGNDLKMDAIHAFAREGDMDNLL--KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISE 292
           E SGN      +HA+     +D     + +  G S N  D +G  PLH A    +  I  
Sbjct: 33  EPSGN---YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVA 89

Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQ--FLVKQNADIGMK-DNDGNSPCHVC 348
           +L++  AD NA D + +TPL+Y    D E I +   LV+  A I    D +G  P   C
Sbjct: 90  MLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLAC 148

Length = 446

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 16/111 (14%)

Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNIS--ELLVSKNADVNAKDNE 307
           AR  D+  +   ++ GV ++ +DS GR  LH  + R +++    +LL     D+N  DN 
Sbjct: 292 ARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNI 351

Query: 308 GQTPLH--YAVVC-----DREA-------IAQFLVKQNADIGMKDNDGNSP 344
           G T LH   +++      D E        + Q L+   ADI   +  G +P
Sbjct: 352 GNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTP 402

Length = 764

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 234 EEESGNDLKMDAIH-------AFAREGDMDNLL---KCIENGVSVNLRDSEGRAPLHWAV 283
           E  SGND+  D I+               D LL     +E G  VN +D     P+H+A 
Sbjct: 127 EAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAA 186

Query: 284 DRGHLNISELLVSKNADVNAKDNEGQTPLHYAV 316
           +RG+  +  LL+S  ADVN    +  + L  AV
Sbjct: 187 ERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 29/123 (23%), Positives = 42/123 (34%), Gaps = 22/123 (17%)

Query: 239 NDLKMDAIHAFAREGDMD----NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN----- 289
           +   M  +    +  + +     LL  I+ G  V   D   R+ LH      HL      
Sbjct: 149 DLYGMTPLAVLLKSRNANVELLRLL--IDAGADVYAVDDRFRSLLHH-----HLQSFKPR 201

Query: 290 --ISELLVSKNADVNAKDNEGQTPLHYAVV---CDREAIAQFLVKQNADIGMKDNDGNSP 344
             I   L+    D  A D  G TPLH       C R  +   L+     I  ++  G +P
Sbjct: 202 ARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA-GISINARNRYGQTP 260

Query: 345 CHV 347
            H 
Sbjct: 261 LHY 263

Length = 471

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 278 PLHWAVDRGH--LNISELLVSKNADVNAK-DNEGQTPLHYAVVCDR---EAIAQFLVKQN 331
           P+   +++    + I + L+   ADVN K  +   + LH+ +  ++     I + L+   
Sbjct: 54  PIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSG 113

Query: 332 ADIGMKDNDGNSPCHV 347
           + I  +D DG +  H+
Sbjct: 114 SSITEEDEDGKNLLHM 129

Length = 209

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 290 ISELLVSKNADVNAKD-NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           I++LL+S  AD+N KD ++G T LHYA     + + + L+   A++ + D   NSP H
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLH 206

Length = 477

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 257 NLLK-CIENGVSVNLR-DSEGRAPLHWAVDRGHLNISE----LLVSKNADVNAKDNEGQT 310
            +LK  IENG  VN +      + LH  +     N+      +L+   + +  +D +G+ 
Sbjct: 67  EILKFLIENGADVNFKTRDNNLSALHHYLSFNK-NVEPEILKILIDSGSSITEEDEDGKN 125

Query: 311 PLH-YAVVCD-REAIAQFLVKQNADIGMKDNDGNSPCH 346
            LH Y    + R  + + L+        KD D N+  +
Sbjct: 126 LLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY 163

Length = 209

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 27/128 (21%)

Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD-- 300
           +DAI    R GD   +   I++G  +N  +++   PL  A+  G  +I +LL+    D  
Sbjct: 40  IDAI----RSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTS 95

Query: 301 ---------------------VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDN 339
                                VN KD E +T LHYA+        + L +  AD+ ++D+
Sbjct: 96  ILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD 155

Query: 340 DGNSPCHV 347
           +G  P H+
Sbjct: 156 NGCYPIHI 163

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 251 REGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA---DVNAKDNE 307
           R+ +   LL  +++G   +++  +  + LH AV+ G +   E L+       DV  KD  
Sbjct: 46  RDSEAIKLL--MKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD-- 101

Query: 308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           G TPLH A +  +  I + L+ + AD  + + D  SP H+
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHL 141

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 256 DNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA 315
           D ++  +E G +VN RD   + P+H+A  R ++ I   L+   AD+ A   +  T LH+A
Sbjct: 356 DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415

Query: 316 VVCDREAIA-QFLVKQNADIGMKDNDGNSPCH 346
           +      ++ + L+ + A++  K+ D ++P H
Sbjct: 416 LCGTNPYMSVKTLIDRGANVNSKNKDLSTPLH 447

Length = 682

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNA 303
           +GR PLH A + G+L + +LL+ K AD+NA
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           M  +H       +D +   I  G   ++ +++  +PLH AV  G +   ELL+   A ++
Sbjct: 103 MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD 162

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM--KDNDGNSPCHVCESDWPWM--LHA 358
            +D  G TPL  A+     AI + L+   A+I    K+    + C+  E++   +  L  
Sbjct: 163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222

Query: 359 AKGTD 363
            +G D
Sbjct: 223 KRGAD 227

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 283 VDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
           + +  L I+E+L+   ADVNAKD    TP+HYA       +   L+   AD+ +   D 
Sbjct: 153 IQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDD 211

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 264 NGVSVNLRDSEGRAPLHWAVDRG-HLNISELLVSKNADVNAKDNEGQTPLHYA 315
           N  S+N +D +G  PLH A++    ++I ++L+   AD++ KDN+G+ P+  A
Sbjct: 243 NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 13/116 (11%)

Query: 246 IHAFAREGDMDNLLKCIENGVSVNLR------DSEGRAPLHWAVDRGHLNISE---LLVS 296
           +H   R G + +LL   +N +S   R      +  G+  +H   +    +  E   LL+ 
Sbjct: 21  LHYLCRNGGVTDLLA-FKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME 79

Query: 297 KNADVNAKDN-EGQTPLHYAVVCDREAIAQFLVKQ-NADIGMKDNDGNSPCHV-CE 349
             AD+N K+   G TPLH AV      +A +L  Q   ++ + +    +P +V CE
Sbjct: 80  WGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACE 135

Length = 154

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.8 bits (92), Expect = 0.001
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 15/86 (17%)

Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK------- 297
            +H  A  GD D +   +E G   N R+S G   L  A   G + + +LL+ K       
Sbjct: 150 PLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLL 209

Query: 298 --------NADVNAKDNEGQTPLHYA 315
                   NA+V+ ++    T L  A
Sbjct: 210 KFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 21/71 (29%), Positives = 38/71 (53%)

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD 333
           +G  PLH A     L+I +LL+++ AD +  + +  +PLH AV+       + L+   A 
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160

Query: 334 IGMKDNDGNSP 344
           + ++D  G +P
Sbjct: 161 LDIEDCCGCTP 171

Length = 413

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 307 EGQTPLHYAVVCDREAIAQFLVKQNADI 334
           +G+TPLH A       + + L+ + ADI
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 307 EGQTPLHYAVVCDREAIAQFLVKQNADI 334
           +G TPLH A       + + L++  ADI
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 236 ESGNDLKMDA----IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNIS 291
              +D  M +    + +      ++ LLK     +  ++ DS+GR PLH A  +G+ +  
Sbjct: 518 GEHDDPNMASNLLTVASTGNAALLEELLKA---KLDPDIGDSKGRTPLHIAASKGYEDCV 574

Query: 292 ELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFL 327
            +L+    +V+ +D  G T L  A+      I + L
Sbjct: 575 LVLLKHACNVHIRDANGNTALWNAISAKHHKIFRIL 610

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           T LH A +  R  + ++L+++  DI   D DGN+  H+ 
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIA 41

Length = 54

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNA 303
           +G  PLH A   G+L + +LL+   AD+NA
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 254 DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGH---LNISELLVSKNADVNAKDN-EGQ 309
           +++ LL  IENG    L D +G   L   +   H   + I +LL+ K  D+N  +N E  
Sbjct: 124 NLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKY 183

Query: 310 TPLH----YAVVCDREAIAQFLVKQNADIGMKDNDGN 342
             LH    Y +      I +  V  N  I  K+N  +
Sbjct: 184 DTLHCYFKYNIDRIDADILKLFV-DNGFIINKENKSH 219

Length = 489

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	363
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.89
PHA02791	284	ankyrin-like protein; Provisional	99.89
PHA02875	413	ankyrin repeat protein; Provisional	99.88
PHA02878	477	ankyrin repeat protein; Provisional	99.88
PHA02874	434	ankyrin repeat protein; Provisional	99.88
PHA03100	480	ankyrin repeat protein; Provisional	99.87
PHA02946	446	ankyin-like protein; Provisional	99.87
PHA02875	413	ankyrin repeat protein; Provisional	99.86
PHA03095	471	ankyrin-like protein; Provisional	99.86
PTZ00458	90	acyl CoA binding protein; Provisional	99.86
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.86
PHA02798	489	ankyrin-like protein; Provisional	99.85
PHA02791	284	ankyrin-like protein; Provisional	99.85
PHA02878	477	ankyrin repeat protein; Provisional	99.85
PHA03100	480	ankyrin repeat protein; Provisional	99.85
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.85
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.84
PHA02874	434	ankyrin repeat protein; Provisional	99.84
PHA02876	682	ankyrin repeat protein; Provisional	99.84
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.84
PHA03095	471	ankyrin-like protein; Provisional	99.83
PHA02859	209	ankyrin repeat protein; Provisional	99.83
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02876	682	ankyrin repeat protein; Provisional	99.83
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.83
PHA02989	494	ankyrin repeat protein; Provisional	99.83
cd00435	85	ACBP Acyl CoA binding protein (ACBP) binds thiol e	99.83
KOG0508	615	consensus Ankyrin repeat protein [General function	99.82
PHA02917	661	ankyrin-like protein; Provisional	99.82
PHA02946	446	ankyin-like protein; Provisional	99.82
KOG0817	142	consensus Acyl-CoA-binding protein [Lipid transpor	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PF00887	87	ACBP: Acyl CoA binding protein; InterPro: IPR00058	99.8
KOG0510	929	consensus Ankyrin repeat protein [General function	99.79
PHA02884	300	ankyrin repeat protein; Provisional	99.79
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.79
PHA02795	437	ankyrin-like protein; Provisional	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
PHA02743	166	Viral ankyrin protein; Provisional	99.78
KOG0510	929	consensus Ankyrin repeat protein [General function	99.78
KOG0514	452	consensus Ankyrin repeat protein [General function	99.78
PHA02989	494	ankyrin repeat protein; Provisional	99.77
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.77
PHA02798	489	ankyrin-like protein; Provisional	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.76
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.76
KOG0508	615	consensus Ankyrin repeat protein [General function	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.75
PHA02795	437	ankyrin-like protein; Provisional	99.75
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.73
COG4281	87	ACB Acyl-CoA-binding protein [Lipid metabolism]	99.71
PHA02730	672	ankyrin-like protein; Provisional	99.71
PHA02741	169	hypothetical protein; Provisional	99.7
KOG0514	452	consensus Ankyrin repeat protein [General function	99.7
PHA02917	661	ankyrin-like protein; Provisional	99.7
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.67
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.67
PHA02730	672	ankyrin-like protein; Provisional	99.65
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.63
PHA02884	300	ankyrin repeat protein; Provisional	99.62
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.61
PHA02792	631	ankyrin-like protein; Provisional	99.59
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.59
PHA02792	631	ankyrin-like protein; Provisional	99.59
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.58
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.56
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.54
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.51
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.5
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.49
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.49
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.39
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.35
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.33
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.31
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.27
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.21
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.17
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.14
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.13
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.13
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.01
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.91
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.89
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.86
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.74
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.73
PF13606	30	Ank_3: Ankyrin repeat	98.73
KOG3878	469	consensus Protein involved in maintenance of Golgi	98.72
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.71
PF13606	30	Ank_3: Ankyrin repeat	98.59
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.59
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.58
KOG0522	560	consensus Ankyrin repeat protein [General function	98.56
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.5
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.4
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.39
KOG0522	560	consensus Ankyrin repeat protein [General function	98.27
KOG0511	516	consensus Ankyrin repeat protein [General function	98.22
KOG0511	516	consensus Ankyrin repeat protein [General function	98.21
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.21
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.15
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.06
KOG2384	223	consensus Major histocompatibility complex protein	98.04
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.89
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.56
KOG2505	591	consensus Ankyrin repeat protein [General function	97.27
KOG2384	223	consensus Major histocompatibility complex protein	97.24
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.92
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.88
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.81
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.6
KOG2505	591	consensus Ankyrin repeat protein [General function	96.31
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.78
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	81.95

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.7e-27  Score=200.94  Aligned_cols=177  Identities=23%  Similarity=0.320  Sum_probs=156.3

Q ss_pred             HhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc---ccccccccccccCCCCchHHHHHHH
Q 043342          175 QKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG---PVFSSFAYEEESGNDLKMDAIHAFA  250 (363)
Q Consensus       175 ~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~~~~~~~~~~g~t~Lh~Aa  250 (363)
                      ++.|.+|+|.| ..+.++++..|+.+-....+.++..|++|+|++++.+..+   .++.+...+.+..+..|.|+||+|+
T Consensus        35 dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAa  114 (226)
T KOG4412|consen   35 DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAA  114 (226)
T ss_pred             cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhh
Confidence            34789999985 5688999999997666666667888999999999888543   4445546677888899999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 043342          251 REGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ  330 (363)
Q Consensus       251 ~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  330 (363)
                      ..|.++++++|+++|+.++.+|..|.||||-|+..|.+.++++|+..|+.+|.+|..|+||||+|..-|+.++..+|+++
T Consensus       115 gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~  194 (226)
T KOG4412|consen  115 GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRA  194 (226)
T ss_pred             cCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999888999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHhcCc
Q 043342          331 NADIGMKDNDGNSPCHVCESDW  352 (363)
Q Consensus       331 Gad~~~~d~~G~TpL~~A~~~~  352 (363)
                      ||++...|+.| ||+.+++..+
T Consensus       195 gAd~~~edke~-t~~~~a~~~l  215 (226)
T KOG4412|consen  195 GADTDREDKEG-TALRIACNEL  215 (226)
T ss_pred             ccceeeccccC-chHHHHHHHH
Confidence            99999999988 9999888764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=9.2e-27  Score=196.45  Aligned_cols=165  Identities=24%  Similarity=0.341  Sum_probs=139.0

Q ss_pred             hcCccccccccccccccc-cccCCCCcchhhhhcCCCCCc---ccccccccccccCCCCchHHHHHHHHcCCHHHHHHHH
Q 043342          187 QKYIDIVTELYPTWAAGS-SLKSKRGQEDAASTDSKAPMG---PVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCI  262 (363)
Q Consensus       187 ~~yv~~v~~Ll~~~~~~~-~~~~~~g~~~~~~a~~~~~~~---~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL  262 (363)
                      ..+...+.+++..-.... ..+..++.+++|-+.+.+...   .+++......+..|..|+||||.||..|+.++|+.|+
T Consensus        13 ~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll   92 (226)
T KOG4412|consen   13 NCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELL   92 (226)
T ss_pred             hchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHh
Confidence            344444555554433222 334458999999888777543   3333444455667899999999999999999999999


Q ss_pred             Hc-CCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 043342          263 EN-GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG  341 (363)
Q Consensus       263 ~~-g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G  341 (363)
                      .+ |+++|..+..|+|+||||+..|.++|+++|+++|+.++.+|..|+||||-|+..|..+++++|+..|+.+|..|+.|
T Consensus        93 ~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G  172 (226)
T KOG4412|consen   93 NRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYG  172 (226)
T ss_pred             cCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccC
Confidence            98 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHH-hcC
Q 043342          342 NSPCHVC-ESD  351 (363)
Q Consensus       342 ~TpL~~A-~~~  351 (363)
                      +||||.| ++.
T Consensus       173 ~TpL~~al~e~  183 (226)
T KOG4412|consen  173 FTPLHHALAEG  183 (226)
T ss_pred             ccHHHHHHhcc
Confidence            9999999 554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.89  E-value=7.1e-23  Score=184.33  Aligned_cols=176  Identities=16%  Similarity=0.105  Sum_probs=144.0

Q ss_pred             HHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCC----CCcccccccccccccCC-CCchHH
Q 043342          172 QAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKA----PMGPVFSSFAYEEESGN-DLKMDA  245 (363)
Q Consensus       172 ~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~----~~~~ll~~~~~~~~~~~-~~g~t~  245 (363)
                      ++..+...+|++.| ..++++.|+.|+..    ....+..+.|+++.+...+    .+..++...+.+.+..+ ..|.||
T Consensus        15 ~~~~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~Tp   90 (209)
T PHA02859         15 DYLFYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSA   90 (209)
T ss_pred             HHHhhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCH
Confidence            34456678999986 45788999988753    2346778899999776433    12233333444555554 578999


Q ss_pred             HHHHHHc---CCHHHHHHHHHcCCCCccCCCCCChHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCcHHHH-HHHcC
Q 043342          246 IHAFARE---GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVD--RGHLNISELLVSKNADVNAKDNEGQTPLHY-AVVCD  319 (363)
Q Consensus       246 Lh~Aa~~---g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~--~g~~~iv~~Ll~~gadin~~d~~G~TpLh~-A~~~g  319 (363)
                      ||+|+..   ++.+++++|+++|+++|.+|..|.||||+|+.  .++.+++++|++.|++++.+|..|.||||. |+..+
T Consensus        91 Lh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         91 LHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcC
Confidence            9998764   47999999999999999999999999999886  468999999999999999999999999995 56678


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          320 REAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       320 ~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +.+++++|+++|++++.+|..|.||||+|..+
T Consensus       171 ~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        171 DKKIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence            99999999999999999999999999999875

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=4.7e-23  Score=193.15  Aligned_cols=172  Identities=10%  Similarity=0.061  Sum_probs=122.3

Q ss_pred             HhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHHHH
Q 043342          175 QKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFAR  251 (363)
Q Consensus       175 ~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa~  251 (363)
                      +..|.||++.| ..++.++++.|+..+...   ...++.++++.++..+...  .++...+.+.+..+..|.||||+|+.
T Consensus        27 D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~---n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         27 DVHGHSALYYAIADNNVRLVCTLLNAGALK---NLLENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD  103 (284)
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCcCCC---cCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            45577888875 446677777777755432   2334677887776665432  22333344556667778888888888


Q ss_pred             cCCHHHHHHHHHcCCCCccCCCCC-ChHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHh
Q 043342          252 EGDMDNLLKCIENGVSVNLRDSEG-RAPLHWAVDRGHLNISELLVSKNADVNAKD-NEGQTPLHYAVVCDREAIAQFLVK  329 (363)
Q Consensus       252 ~g~~~~v~~LL~~g~~vn~~d~~g-~TpLh~A~~~g~~~iv~~Ll~~gadin~~d-~~G~TpLh~A~~~g~~~iv~~Ll~  329 (363)
                      .|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|++++.+.  .| ..|.||||+|+..|+.+++++|++
T Consensus       104 ~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~  181 (284)
T PHA02791        104 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLD  181 (284)
T ss_pred             cCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHH
Confidence            888888888888888887777776 47888888888888888888776543  22 247788888888888888888888


Q ss_pred             CCCCCCCCCCCCCcH-HHHHhcC
Q 043342          330 QNADIGMKDNDGNSP-CHVCESD  351 (363)
Q Consensus       330 ~Gad~~~~d~~G~Tp-L~~A~~~  351 (363)
                      +|++++.+|..|.|| ||+|+.+
T Consensus       182 ~gAd~n~~d~~g~t~~L~~Aa~~  204 (284)
T PHA02791        182 YMTSTNTNNSLLFIPDIKLAIDN  204 (284)
T ss_pred             CCCCCCcccCCCCChHHHHHHHc
Confidence            888888888888776 8888765

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.8e-22  Score=199.53  Aligned_cols=177  Identities=19%  Similarity=0.193  Sum_probs=140.8

Q ss_pred             HHhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCCCCc---ccccccccccccCCCCchHHHHHH
Q 043342          174 WQKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG---PVFSSFAYEEESGNDLKMDAIHAF  249 (363)
Q Consensus       174 w~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~~~~~~~~~~g~t~Lh~A  249 (363)
                      ....|.+|+|.|. .+..++++.|+..+.... .+...+.++++.+...+...   .++..........+..|.||||+|
T Consensus        31 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  109 (413)
T PHA02875         31 EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA  109 (413)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-ccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHH
Confidence            3445788888764 467888888888765432 34456778888877776543   233333333344456688999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 043342          250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK  329 (363)
Q Consensus       250 a~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  329 (363)
                      +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus       110 ~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~  189 (413)
T PHA02875        110 TILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD  189 (413)
T ss_pred             HHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCC-cHHHHHhcC
Q 043342          330 QNADIGMKDNDGN-SPCHVCESD  351 (363)
Q Consensus       330 ~Gad~~~~d~~G~-TpL~~A~~~  351 (363)
                      +|++++..+..|. ||+|+|+.+
T Consensus       190 ~ga~~n~~~~~~~~t~l~~A~~~  212 (413)
T PHA02875        190 SGANIDYFGKNGCVAALCYAIEN  212 (413)
T ss_pred             CCCCCCcCCCCCCchHHHHHHHc
Confidence            9999999888774 788878765

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.88  E-value=4.1e-22  Score=200.75  Aligned_cols=206  Identities=17%  Similarity=0.159  Sum_probs=127.3

Q ss_pred             HhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHh-cCccccccccccccccccccCCCCcchhhhh
Q 043342          140 QLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQ-KYIDIVTELYPTWAAGSSLKSKRGQEDAAST  218 (363)
Q Consensus       140 ~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~-~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a  218 (363)
                      ...+..|+..+..|.....+   +-+..++.++..+..|.||+|.|.. +..+.+..|+........   ..+.++++.+
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk---~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~l~~a  108 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVK---SLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV---FYTLVAIKDA  108 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHH---HHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc---ccchhhHHHH
Confidence            34555677766666643221   1233456777888889999998644 555666666553321111   1111121111


Q ss_pred             cCCCC-----------------------------------CcccccccccccccCCCC-chHHHHHHHHcCCHHHHHHHH
Q 043342          219 DSKAP-----------------------------------MGPVFSSFAYEEESGNDL-KMDAIHAFAREGDMDNLLKCI  262 (363)
Q Consensus       219 ~~~~~-----------------------------------~~~ll~~~~~~~~~~~~~-g~t~Lh~Aa~~g~~~~v~~LL  262 (363)
                      ...+.                                   +..++...+.+.+..+.. |.||||+|+..|+.+++++|+
T Consensus       109 ~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll  188 (477)
T PHA02878        109 FNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL  188 (477)
T ss_pred             HHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence            11100                                   111222223334444555 777777777777777777777


Q ss_pred             HcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCCCCC-C
Q 043342          263 ENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC-DREAIAQFLVKQNADIGMKDN-D  340 (363)
Q Consensus       263 ~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~Gad~~~~d~-~  340 (363)
                      ++|++++.+|..|.||||+|+..++.+++++|++.|+++|.+|..|+||||+|+.. ++.+++++|+++|++++.++. .
T Consensus       189 ~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~  268 (477)
T PHA02878        189 SYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYIL  268 (477)
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCC
Confidence            77777777777777777777777777777777777777777777777777777754 567777777777777777765 6


Q ss_pred             CCcHHHHHhcC
Q 043342          341 GNSPCHVCESD  351 (363)
Q Consensus       341 G~TpL~~A~~~  351 (363)
                      |.||||+|..+
T Consensus       269 g~TpLh~A~~~  279 (477)
T PHA02878        269 GLTALHSSIKS  279 (477)
T ss_pred             CCCHHHHHccC
Confidence            77777777554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.88  E-value=6.6e-22  Score=196.95  Aligned_cols=176  Identities=22%  Similarity=0.268  Sum_probs=125.8

Q ss_pred             HhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCCCCc-------------------------ccc
Q 043342          175 QKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG-------------------------PVF  228 (363)
Q Consensus       175 ~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~-------------------------~ll  228 (363)
                      ...+.+|++.|. .+..++++.|+..+.+... .+..+.++++.+...+...                         ..+
T Consensus        32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~-~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l  110 (434)
T PHA02874         32 VDETTTPLIDAIRSGDAKIVELFIKHGADINH-INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI  110 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHH
Confidence            344556666543 3555666666655443322 3344555555444433211                         111


Q ss_pred             cccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 043342          229 SSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEG  308 (363)
Q Consensus       229 ~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G  308 (363)
                      ...+.+.+..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus       111 l~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g  190 (434)
T PHA02874        111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG  190 (434)
T ss_pred             HHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC
Confidence            11223345567778889999999888889998888888888888888899999998888889999998888888888888


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          309 QTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       309 ~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus       191 ~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~  233 (434)
T PHA02874        191 ESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH  233 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHC
Confidence            9999999988888999999888888877777777777777654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.87  E-value=4.6e-22  Score=200.17  Aligned_cols=182  Identities=24%  Similarity=0.318  Sum_probs=156.2

Q ss_pred             hhHHHHHhcCCCCHHHHH---hcCccccccccccccccccccCCCCcchhhhhcCCC--CCc--ccccccccccccCCCC
Q 043342          169 AKWQAWQKLGAMPPEEAM---QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKA--PMG--PVFSSFAYEEESGNDL  241 (363)
Q Consensus       169 ak~~aw~~~g~t~l~~A~---~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~--~~~--~ll~~~~~~~~~~~~~  241 (363)
                      +..+..+..|.+|++.|.   .+..++++.|+..+.+. ...+..|.++++.+...+  ...  .++...+.+.+..+..
T Consensus        97 a~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~  175 (480)
T PHA03100         97 ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRY  175 (480)
T ss_pred             CCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCC
Confidence            334555677899999876   46789999999877654 346678899999887666  322  2333344555666778


Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCC------ChHHHHHHHcCC--HHHHHHHHhCCCCCCCCCCCCCcHHH
Q 043342          242 KMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEG------RAPLHWAVDRGH--LNISELLVSKNADVNAKDNEGQTPLH  313 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g------~TpLh~A~~~g~--~~iv~~Ll~~gadin~~d~~G~TpLh  313 (363)
                      |.||||+|+..|+.+++++|+++|++++..+..|      .||||+|+..++  .+++++|++.|+++|.+|..|.||||
T Consensus       176 g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~  255 (480)
T PHA03100        176 GYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLH  255 (480)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            9999999999999999999999999999999888      899999999999  99999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       314 ~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|+..|+.+++++|+++|++++.+|..|.||+|+|+.+
T Consensus       256 ~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~  293 (480)
T PHA03100        256 YAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILN  293 (480)
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHh
Confidence            99999999999999999999999999999999999865

>PHA02946 ankyin-like protein; Provisional

Probab=99.87  E-value=5.7e-22  Score=197.66  Aligned_cols=182  Identities=14%  Similarity=0.147  Sum_probs=150.5

Q ss_pred             hhhhHHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCC--Cc--ccccccccccc-cCCC
Q 043342          167 ARAKWQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAP--MG--PVFSSFAYEEE-SGND  240 (363)
Q Consensus       167 ~~ak~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~--~~--~ll~~~~~~~~-~~~~  240 (363)
                      ..+..+..+..|.||+|.| ..+..++++.|+..+++.. .+++.|.||++.+...+.  +.  .++...+.+.+ ..+.
T Consensus        61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin-~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~  139 (446)
T PHA02946         61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPN-ACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE  139 (446)
T ss_pred             CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC
Confidence            4456677888899999986 5577899999998776554 578889999997654332  11  22333334443 4678


Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 043342          241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRG--HLNISELLVSKNADVNAKDNEGQTPLHYAVVC  318 (363)
Q Consensus       241 ~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g--~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~  318 (363)
                      .|.|||| ||..|+.++++.|++.|++++.+|..|+||||+|+..+  +.+++++|++.|+++|.+|..|+||||+|+..
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~  218 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSK  218 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            8999998 66779999999999999999999999999999998755  46899999999999999999999999999998


Q ss_pred             C--CHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          319 D--REAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       319 g--~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +  +.+++++|+. |++++.+|..|.||||+|+..
T Consensus       219 ~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        219 TVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             CCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHh
Confidence            6  7899999985 999999999999999999875

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.86  E-value=2.4e-21  Score=191.48  Aligned_cols=172  Identities=18%  Similarity=0.212  Sum_probs=145.7

Q ss_pred             CCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHHHHcCCH
Q 043342          179 AMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFAREGDM  255 (363)
Q Consensus       179 ~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~  255 (363)
                      .+.++.| ..++.++++.|+..+.+... ....|.++++.+...+...  .++...+...+..+..+.||||.|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNF-EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            3556665 55789999999987765443 5567999999888776543  233333444455566789999999999999


Q ss_pred             HHHHHHHHcCCCCc-cCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 043342          256 DNLLKCIENGVSVN-LRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI  334 (363)
Q Consensus       256 ~~v~~LL~~g~~vn-~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~  334 (363)
                      ++++.|++.|..++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~  161 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL  161 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            99999999997764 45677999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHhcC
Q 043342          335 GMKDNDGNSPCHVCESD  351 (363)
Q Consensus       335 ~~~d~~G~TpL~~A~~~  351 (363)
                      +.+|..|.||||+|+..
T Consensus       162 ~~~d~~g~TpL~~A~~~  178 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAK  178 (413)
T ss_pred             CCCCCCCCCHHHHHHHc
Confidence            99999999999999865

>PHA03095 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.6e-21  Score=195.72  Aligned_cols=184  Identities=21%  Similarity=0.212  Sum_probs=149.3

Q ss_pred             hhhhHHHHHhcCCCCHHHHHh---cCccccccccccccccccccCCCCcchhhhhcCCCCC----cccccccccccccCC
Q 043342          167 ARAKWQAWQKLGAMPPEEAMQ---KYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPM----GPVFSSFAYEEESGN  239 (363)
Q Consensus       167 ~~ak~~aw~~~g~t~l~~A~~---~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~----~~ll~~~~~~~~~~~  239 (363)
                      .++..+..+..|.||+|.|..   ...++++.|+..+.+.. ..+..|.++++.+...+..    ..++...+.+....+
T Consensus       106 ~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d  184 (471)
T PHA03095        106 AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVD  184 (471)
T ss_pred             cCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccC
Confidence            445566777788999998773   24578888888766543 3567788888765443321    122223333444457


Q ss_pred             CCchHHHHHHHHc--CCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCH--HHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 043342          240 DLKMDAIHAFARE--GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHL--NISELLVSKNADVNAKDNEGQTPLHYA  315 (363)
Q Consensus       240 ~~g~t~Lh~Aa~~--g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~--~iv~~Ll~~gadin~~d~~G~TpLh~A  315 (363)
                      ..|.||||+++..  ++.++++.|++.|++++.+|..|.||||+|+..|+.  .+++.|+..|+++|.+|..|+||||+|
T Consensus       185 ~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A  264 (471)
T PHA03095        185 DRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA  264 (471)
T ss_pred             CCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            8899999999875  678999999999999999999999999999999874  578899999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          316 VVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       316 ~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +..|+.+++++|+++|++++.+|.+|.||||+|+.+
T Consensus       265 ~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~  300 (471)
T PHA03095        265 AVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRN  300 (471)
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh
Confidence            999999999999999999999999999999999865

>PTZ00458 acyl CoA binding protein; Provisional

Probab=99.86  E-value=5.7e-22  Score=151.98  Aligned_cols=87  Identities=32%  Similarity=0.746  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCcccc
Q 043342          114 DEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV  193 (363)
Q Consensus       114 ~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~~v  193 (363)
                      .+.|++|+.+|++.+.+  ..++++++|+||+||||||+|+|+.++|++|++.+++||++|.++++|+.++||+.||+++
T Consensus         2 ~~~F~~A~~~v~~~~~~--~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~YI~l~   79 (90)
T PTZ00458          2 ADLFEECVSFINSLPKT--VNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRYVEIV   79 (90)
T ss_pred             hHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            35699999999986654  3689999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccc
Q 043342          194 TELYPTWAA  202 (363)
Q Consensus       194 ~~Ll~~~~~  202 (363)
                      ..+++.|..
T Consensus        80 ~~l~~~w~~   88 (90)
T PTZ00458         80 TELFPNWEK   88 (90)
T ss_pred             HHHhhcccc
Confidence            999998864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.86  E-value=2.1e-21  Score=201.20  Aligned_cols=178  Identities=22%  Similarity=0.174  Sum_probs=147.7

Q ss_pred             hhHHHH-HhcCCCCHHHHHh---cCccccccccccccccccccCCCCcchhhhhcCCCCC----cccccccccccccCCC
Q 043342          169 AKWQAW-QKLGAMPPEEAMQ---KYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPM----GPVFSSFAYEEESGND  240 (363)
Q Consensus       169 ak~~aw-~~~g~t~l~~A~~---~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~----~~ll~~~~~~~~~~~~  240 (363)
                      +..++. +..|.+|+|.|..   ...++++.|+..+.+.. .++..|.||++.++..+..    ..++...+.+.+..+.
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN-~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~  245 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVN-LQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCV  245 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC
Confidence            556666 7778999998653   24688999998776544 3677899999988877642    2334455667778888


Q ss_pred             CchHHHHHH-------------------------------------HHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHH
Q 043342          241 LKMDAIHAF-------------------------------------AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAV  283 (363)
Q Consensus       241 ~g~t~Lh~A-------------------------------------a~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~  283 (363)
                      .|.||||.|                                     ++.|+.++++.|++.|++++.+|..|+||||+|+
T Consensus       246 ~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aa  325 (764)
T PHA02716        246 NGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYI  325 (764)
T ss_pred             CCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHH
Confidence            999999965                                     4457889999999999999999999999999987


Q ss_pred             H--cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH--------------cCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          284 D--RGHLNISELLVSKNADVNAKDNEGQTPLHYAVV--------------CDREAIAQFLVKQNADIGMKDNDGNSPCHV  347 (363)
Q Consensus       284 ~--~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~--------------~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~  347 (363)
                      .  .++.+++++|++.|+++|.+|..|+||||+|+.              .++.+++++|+++|++++.+|..|.||||.
T Consensus       326 a~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~  405 (764)
T PHA02716        326 LRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTS  405 (764)
T ss_pred             HHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHH
Confidence            5  467899999999999999999999999999875              368899999999999999999999999993

>PHA02798 ankyrin-like protein; Provisional

Probab=99.85  E-value=2.8e-21  Score=195.33  Aligned_cols=186  Identities=18%  Similarity=0.211  Sum_probs=150.7

Q ss_pred             hhhhhhHHHHHhcCCCCHHHHHh------cCccccccccccccccccccCCCCcchhhhhcCCCCC-----ccccccccc
Q 043342          165 MTARAKWQAWQKLGAMPPEEAMQ------KYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPM-----GPVFSSFAY  233 (363)
Q Consensus       165 ~~~~ak~~aw~~~g~t~l~~A~~------~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~-----~~ll~~~~~  233 (363)
                      +..++..++.+..|.||++.+..      ...++++.|+..+++.. .++..|.||+|.+...+..     ..++...+.
T Consensus        58 l~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Ga  136 (489)
T PHA02798         58 INLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGA  136 (489)
T ss_pred             HHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCC
Confidence            34556677778889999988654      34788999998877644 4677899999977665422     223334456


Q ss_pred             ccccCCCCchHHHHHHHHcCC---HHHHHHHHHcCCCCccCC-CCCChHHHHHHHc----CCHHHHHHHHhCCC------
Q 043342          234 EEESGNDLKMDAIHAFAREGD---MDNLLKCIENGVSVNLRD-SEGRAPLHWAVDR----GHLNISELLVSKNA------  299 (363)
Q Consensus       234 ~~~~~~~~g~t~Lh~Aa~~g~---~~~v~~LL~~g~~vn~~d-~~g~TpLh~A~~~----g~~~iv~~Ll~~ga------  299 (363)
                      +.+..+..|.||||+|++.|+   .+++++|+++|++++..+ ..|.||||.++..    ++.+++++|+++|+      
T Consensus       137 dvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~  216 (489)
T PHA02798        137 DTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKEN  216 (489)
T ss_pred             CccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCC
Confidence            677788899999999999987   999999999999999875 4689999988754    46788888887765      


Q ss_pred             ---------------------------------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 043342          300 ---------------------------------DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH  346 (363)
Q Consensus       300 ---------------------------------din~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~  346 (363)
                                                       ++|.+|..|+||||+|+..|+.+++++|+++||+++.+|..|.||||
T Consensus       217 ~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~  296 (489)
T PHA02798        217 KSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLF  296 (489)
T ss_pred             ccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHH
Confidence                                             45557778999999999999999999999999999999999999999


Q ss_pred             HHhcC
Q 043342          347 VCESD  351 (363)
Q Consensus       347 ~A~~~  351 (363)
                      +|+.+
T Consensus       297 ~A~~~  301 (489)
T PHA02798        297 TAFEN  301 (489)
T ss_pred             HHHHc
Confidence            99865

>PHA02791 ankyrin-like protein; Provisional

Probab=99.85  E-value=4.2e-21  Score=180.02  Aligned_cols=157  Identities=18%  Similarity=0.108  Sum_probs=129.0

Q ss_pred             cCccccccccccccccccccCCCCcchhhhhcCCCCCccc--ccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcC
Q 043342          188 KYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPV--FSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENG  265 (363)
Q Consensus       188 ~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~l--l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g  265 (363)
                      .+.++++.|+..+.   ..++..|.|+++.+...+....+  +.....+.+..  .+.||||+|+..|+.+++++|+..|
T Consensus        10 ~~~~~~~~Lis~~a---~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~G   84 (284)
T PHA02791         10 KSKQLKSFLSSKDA---FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSG   84 (284)
T ss_pred             CHHHHHHHHHhCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHCC
Confidence            35566777776433   45678899999999888755432  22222222322  4689999999999999999999999


Q ss_pred             CCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCc
Q 043342          266 VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ-TPLHYAVVCDREAIAQFLVKQNADIGMKD-NDGNS  343 (363)
Q Consensus       266 ~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~-TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d-~~G~T  343 (363)
                      ++++.+|..|+||||+|+..|+.+++++|+.+|++++.++..|+ ||||+|+..|+.+++++|++++.+.  .| ..|.|
T Consensus        85 advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~T  162 (284)
T PHA02791         85 MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLS  162 (284)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCcc
Confidence            99999999999999999999999999999999999999999885 8999999999999999999987644  23 35899


Q ss_pred             HHHHHhcC
Q 043342          344 PCHVCESD  351 (363)
Q Consensus       344 pL~~A~~~  351 (363)
                      |||+|+.+
T Consensus       163 pLh~Aa~~  170 (284)
T PHA02791        163 CIHITIKN  170 (284)
T ss_pred             HHHHHHHc
Confidence            99999876

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.85  E-value=3.7e-21  Score=193.85  Aligned_cols=159  Identities=22%  Similarity=0.259  Sum_probs=137.0

Q ss_pred             cccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCC
Q 043342          191 DIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSV  268 (363)
Q Consensus       191 ~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~v  268 (363)
                      ++++.|+..+.+........|.+++|.++..+...  .++...+.+.+..+..|.||||.|++.|+.++++.|++.|+++
T Consensus       148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i  227 (477)
T PHA02878        148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST  227 (477)
T ss_pred             HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            47888888777655533334899999888877543  2333445566778889999999999999999999999999999


Q ss_pred             ccCCCCCChHHHHHHHc-CCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 043342          269 NLRDSEGRAPLHWAVDR-GHLNISELLVSKNADVNAKDN-EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH  346 (363)
Q Consensus       269 n~~d~~g~TpLh~A~~~-g~~~iv~~Ll~~gadin~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~  346 (363)
                      +.+|..|+||||+|+.. ++.+++++|+++|+++|.++. .|.||||+|  .++.+++++|+++|++++.+|..|.||||
T Consensus       228 n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~  305 (477)
T PHA02878        228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLS  305 (477)
T ss_pred             CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            99999999999999976 689999999999999999886 799999999  57889999999999999999999999999


Q ss_pred             HHhcC
Q 043342          347 VCESD  351 (363)
Q Consensus       347 ~A~~~  351 (363)
                      +|+..
T Consensus       306 ~A~~~  310 (477)
T PHA02878        306 SAVKQ  310 (477)
T ss_pred             HHHHH
Confidence            99864

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.85  E-value=5.2e-21  Score=192.51  Aligned_cols=183  Identities=23%  Similarity=0.312  Sum_probs=158.3

Q ss_pred             hhhHHHHHhcCCCCHHH-----H-HhcCccccccccccccccccccCCCCcchhhhhc--CCCCCc--cccccccccccc
Q 043342          168 RAKWQAWQKLGAMPPEE-----A-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTD--SKAPMG--PVFSSFAYEEES  237 (363)
Q Consensus       168 ~ak~~aw~~~g~t~l~~-----A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~--~~~~~~--~ll~~~~~~~~~  237 (363)
                      ++..+.....+.++++.     | ..+..++++.|+..+++. ...+..|.++++.+.  ..+...  .++...+.+.+.
T Consensus        58 g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~  136 (480)
T PHA03100         58 GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI  136 (480)
T ss_pred             CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCc
Confidence            34445556667889988     6 457789999999887766 557778899999888  666433  233334455667


Q ss_pred             CCCCchHHHHHHHHcC--CHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC------C
Q 043342          238 GNDLKMDAIHAFAREG--DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEG------Q  309 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~g--~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G------~  309 (363)
                      .+..|.||||+|+..|  +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|      .
T Consensus       137 ~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~  216 (480)
T PHA03100        137 KNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFE  216 (480)
T ss_pred             cCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHH
Confidence            7888999999999999  9999999999999999999999999999999999999999999999999999999      9


Q ss_pred             cHHHHHHHcCC--HHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          310 TPLHYAVVCDR--EAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       310 TpLh~A~~~g~--~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ||||+|+..++  .+++++|+++|++++.+|..|.||||+|+..
T Consensus       217 t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~  260 (480)
T PHA03100        217 TPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYN  260 (480)
T ss_pred             hHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            99999999999  9999999999999999999999999999875

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.85  E-value=2.3e-21  Score=191.02  Aligned_cols=211  Identities=19%  Similarity=0.290  Sum_probs=177.5

Q ss_pred             hhHhHHhhhhhccccCCCCCCCCchhhhhh-hhhHHHHHhcCCCCHHH-HHhcCccccccccccccccccccCCCCcchh
Q 043342          138 DVQLQLYALYKIATEGPCSAPQPSALKMTA-RAKWQAWQKLGAMPPEE-AMQKYIDIVTELYPTWAAGSSLKSKRGQEDA  215 (363)
Q Consensus       138 ~~~L~lyalykqAt~G~~~~~~p~~~~~~~-~ak~~aw~~~g~t~l~~-A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~  215 (363)
                      ++...+...++.+..|.....+.   -+.. ....+.-++.|-+.+|- |+.+.+++++.|+..+++.+.....-+.+|+
T Consensus        40 e~d~~~~~~v~A~q~G~l~~v~~---lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPL  116 (600)
T KOG0509|consen   40 EEDSSLDDIVKATQYGELETVKE---LVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPL  116 (600)
T ss_pred             ccchhhhhhhhHhhcchHHHHHH---HHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcc
Confidence            34444556677777777543321   1122 44556667788899996 6888999999999999988887778888999


Q ss_pred             hhhcCCCCCc--ccccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHH
Q 043342          216 ASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISEL  293 (363)
Q Consensus       216 ~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~  293 (363)
                      |-++.+|.+.  .++...+.+....|..|.++||.|++.|+.-.+.++|.++++++.+|..|+||||||+.+|+...+..
T Consensus       117 HWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~  196 (600)
T KOG0509|consen  117 HWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRR  196 (600)
T ss_pred             hHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHH
Confidence            9998888654  46666778888899999999999999999999999999999999999999999999999999888999


Q ss_pred             HHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          294 LVSKNADVNAKD-NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       294 Ll~~gadin~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+..|+.++..| ..|.||||+|+..|+..++.+|++.|++.+..|.+|.||+++|.+.
T Consensus       197 LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  197 LLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            999999999888 8999999999999999999977788899999999999999999877

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.84  E-value=1.8e-21  Score=191.90  Aligned_cols=166  Identities=26%  Similarity=0.323  Sum_probs=139.6

Q ss_pred             HHhcCcccccccccc-ccccccccCCCCcchhhhhcCCC---CCcccccccccccccCCCCchHHHHHHHHcCCHHHHHH
Q 043342          185 AMQKYIDIVTELYPT-WAAGSSLKSKRGQEDAASTDSKA---PMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLK  260 (363)
Q Consensus       185 A~~~yv~~v~~Ll~~-~~~~~~~~~~~g~~~~~~a~~~~---~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~  260 (363)
                      +..+-++.|+.+++. +... ...+++|.+.+|=++-+.   .+..++++...........+.||||+|+++|+..++..
T Consensus        52 ~q~G~l~~v~~lve~~g~~v-~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~l  130 (600)
T KOG0509|consen   52 TQYGELETVKELVESEGESV-NNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDL  130 (600)
T ss_pred             hhcchHHHHHHHHhhcCcCC-CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHH
Confidence            345677888888876 4333 335568888887554443   34445555554444455788999999999999999999


Q ss_pred             HHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-C
Q 043342          261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD-N  339 (363)
Q Consensus       261 LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d-~  339 (363)
                      |+++|++++.+|..|.||||.|+..|+..++-+||.+|+++|.+|.+|+||||+|+..|....+..|++.|+.++.+| .
T Consensus       131 LlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~  210 (600)
T KOG0509|consen  131 LLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDN  210 (600)
T ss_pred             HHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999988999999999999998 8


Q ss_pred             CCCcHHHHHhcC
Q 043342          340 DGNSPCHVCESD  351 (363)
Q Consensus       340 ~G~TpL~~A~~~  351 (363)
                      .|+||||+|+-.
T Consensus       211 ~g~TpLHwa~~~  222 (600)
T KOG0509|consen  211 HGNTPLHWAVVG  222 (600)
T ss_pred             cCCchHHHHHhc
Confidence            999999999743

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.6e-20  Score=186.98  Aligned_cols=168  Identities=23%  Similarity=0.309  Sum_probs=143.9

Q ss_pred             HHHhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHHHHcCCHHHHHHH
Q 043342          184 EAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKC  261 (363)
Q Consensus       184 ~A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~L  261 (363)
                      .+..+.++.++.|+.............+.++++.+...+...  .++...+.+.+..+..|.||||.|+..|+.+++++|
T Consensus         8 ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~L   87 (434)
T PHA02874          8 CIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLL   87 (434)
T ss_pred             HHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            346678888999887655555556778899999888877543  233334455566778899999999999999999998


Q ss_pred             HHcCC-----------------------CCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 043342          262 IENGV-----------------------SVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC  318 (363)
Q Consensus       262 L~~g~-----------------------~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~  318 (363)
                      +++|+                       +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        88 l~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~  167 (434)
T PHA02874         88 IDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKH  167 (434)
T ss_pred             HHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHC
Confidence            87664                       4667888999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          319 DREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       319 g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ++.+++++|+++|++++.+|..|.||||+|+..
T Consensus       168 ~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~  200 (434)
T PHA02874        168 NFFDIIKLLLEKGAYANVKDNNGESPLHNAAEY  200 (434)
T ss_pred             CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            999999999999999999999999999999876

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.1e-20  Score=198.36  Aligned_cols=180  Identities=15%  Similarity=0.149  Sum_probs=125.6

Q ss_pred             HHHHHhcCCCCHHHHHhc--CccccccccccccccccccCCCCcchhhhhcCCC---CCcccccccccccccCCCCchHH
Q 043342          171 WQAWQKLGAMPPEEAMQK--YIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKA---PMGPVFSSFAYEEESGNDLKMDA  245 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A~~~--yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~---~~~~ll~~~~~~~~~~~~~g~t~  245 (363)
                      .+..+..|.||++.|...  ..+.++.|+..+.+.. ..+..+.++++.+...+   .+..++...+.+.+..+..|.||
T Consensus       300 in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin-~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~Tp  378 (682)
T PHA02876        300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVN-AADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTP  378 (682)
T ss_pred             CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCC-CcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCH
Confidence            344555666777665443  2455555555444332 34556666766655432   22233334455556677778888


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCC-HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC-CHHH
Q 043342          246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGH-LNISELLVSKNADVNAKDNEGQTPLHYAVVCD-REAI  323 (363)
Q Consensus       246 Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~-~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g-~~~i  323 (363)
                      ||+|+..|+.++++.|++.|++++..+..|.||||+|+..++ ..++++|++.|+++|.+|..|+||||+|+..+ +.++
T Consensus       379 Lh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~i  458 (682)
T PHA02876        379 IHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDV  458 (682)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHH
Confidence            888888888888888888888888888888888888876554 45678888888888888888888888888766 5788


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          324 AQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       324 v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +++|+++|++++.+|..|.||+++|+..
T Consensus       459 v~lLl~~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        459 IEMLLDNGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHh
Confidence            8888888888888888888888887653

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.84  E-value=9.5e-21  Score=200.23  Aligned_cols=186  Identities=28%  Similarity=0.367  Sum_probs=161.3

Q ss_pred             hhhhhhHHHHHhcCCCCHHHHHh-c-CccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccccccCCC
Q 043342          165 MTARAKWQAWQKLGAMPPEEAMQ-K-YIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGND  240 (363)
Q Consensus       165 ~~~~ak~~aw~~~g~t~l~~A~~-~-yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~  240 (363)
                      +.-.++.++...+|.|++|.|.. . |.+....++..+. ......+.|.|++++++..+....  ++............
T Consensus       427 l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~-~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~  505 (1143)
T KOG4177|consen  427 LKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGA-DPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAK  505 (1143)
T ss_pred             eccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCC-CcchhccccCcchhhhhccCCchHHHHhhhcCCccCccch
Confidence            34568889999999999998654 4 5666666665444 344577899999999998886553  33333334456677


Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 043342          241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR  320 (363)
Q Consensus       241 ~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~  320 (363)
                      .+.++||.+...+...+++.++++|++++.++..|+||||.||.+|+..+|++|+++|++++.+++.|+||||.||..|+
T Consensus       506 ~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~  585 (1143)
T KOG4177|consen  506 KGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGH  585 (1143)
T ss_pred             hccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcCh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          321 EAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       321 ~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .+|+.+|+++||++|..|.+|.|||++|.+.
T Consensus       586 ~~i~~LLlk~GA~vna~d~~g~TpL~iA~~l  616 (1143)
T KOG4177|consen  586 NDIAELLLKHGASVNAADLDGFTPLHIAVRL  616 (1143)
T ss_pred             HHHHHHHHHcCCCCCcccccCcchhHHHHHh
Confidence            9999999999999999999999999999876

>PHA03095 ankyrin-like protein; Provisional

Probab=99.83  E-value=2.5e-20  Score=186.99  Aligned_cols=184  Identities=20%  Similarity=0.177  Sum_probs=143.9

Q ss_pred             hhhhHHHHHhcCCCCHHHHHh-c-CccccccccccccccccccCCCCcchhhhhcCCCC----CcccccccccccccCCC
Q 043342          167 ARAKWQAWQKLGAMPPEEAMQ-K-YIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAP----MGPVFSSFAYEEESGND  240 (363)
Q Consensus       167 ~~ak~~aw~~~g~t~l~~A~~-~-yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~----~~~ll~~~~~~~~~~~~  240 (363)
                      .++..+..+..|.||+|.|.. + ..++++.|+..+.+. ...+..|.|++|.+.....    +..++...+.+.+..+.
T Consensus        72 ~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~  150 (471)
T PHA03095         72 AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL  150 (471)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC
Confidence            445666677788899998755 4 367888888776653 3356678888887763221    22334444556667778


Q ss_pred             CchHHHHHHHHcC--CHHHHHHHHHcCCCCccCCCCCChHHHHHHHc--CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 043342          241 LKMDAIHAFAREG--DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDR--GHLNISELLVSKNADVNAKDNEGQTPLHYAV  316 (363)
Q Consensus       241 ~g~t~Lh~Aa~~g--~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~--g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~  316 (363)
                      .|.||||+++..+  +.+++++|+++|++++..+..|.||||+++..  ++..+++.|++.|++++.+|..|+||||+|+
T Consensus       151 ~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa  230 (471)
T PHA03095        151 YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMA  230 (471)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            8899999888865  57889999999988888888899999988864  6788899999999999999999999999999


Q ss_pred             HcCCH--HHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          317 VCDRE--AIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       317 ~~g~~--~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ..|+.  .+++.|+.+|++++.+|..|+||||+|+..
T Consensus       231 ~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~  267 (471)
T PHA03095        231 TGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVF  267 (471)
T ss_pred             hcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            88864  678889999999999999999999999874

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.83  E-value=3.1e-20  Score=167.13  Aligned_cols=138  Identities=20%  Similarity=0.200  Sum_probs=116.3

Q ss_pred             CCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcC--CHHHHHHHHHcCCCCccCCC-CCChHHHHHHHc-
Q 043342          210 RGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREG--DMDNLLKCIENGVSVNLRDS-EGRAPLHWAVDR-  285 (363)
Q Consensus       210 ~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g--~~~~v~~LL~~g~~vn~~d~-~g~TpLh~A~~~-  285 (363)
                      ...+|++.+...+....+-.. ....+..+..|.||||+|+..+  +.+++++|+++|+++|.++. .|.||||+|+.. 
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~L-i~~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~   98 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKW-IKFVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFN   98 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHH-HHhhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhC
Confidence            456778888777765432221 2224556788999999999854  89999999999999999974 799999998764 


Q ss_pred             --CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 043342          286 --GHLNISELLVSKNADVNAKDNEGQTPLHYAVV--CDREAIAQFLVKQNADIGMKDNDGNSPCHVC  348 (363)
Q Consensus       286 --g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~--~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A  348 (363)
                        ++.+++++|+++|+++|.+|..|.||||+|+.  .++.+++++|+++|++++.+|.+|.||||.+
T Consensus        99 ~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~  165 (209)
T PHA02859         99 KNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSY  165 (209)
T ss_pred             ccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHH
Confidence              47999999999999999999999999999986  4689999999999999999999999999964

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=4.4e-20  Score=160.62  Aligned_cols=115  Identities=25%  Similarity=0.378  Sum_probs=105.3

Q ss_pred             cCCCCchHHHHHHHHcCCHHHHHHHHH------cCCCCccCCCCCChHHHHHHHcCC----HHHHHHHHhCCCCCCCCCC
Q 043342          237 SGNDLKMDAIHAFAREGDMDNLLKCIE------NGVSVNLRDSEGRAPLHWAVDRGH----LNISELLVSKNADVNAKDN  306 (363)
Q Consensus       237 ~~~~~g~t~Lh~Aa~~g~~~~v~~LL~------~g~~vn~~d~~g~TpLh~A~~~g~----~~iv~~Ll~~gadin~~d~  306 (363)
                      ..+..|.|+||+|++.|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|+..|+++|.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            456778999999999999999998854      357899999999999999999998    5889999999999999985


Q ss_pred             -CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHhcC
Q 043342          307 -EGQTPLHYAVVCDREAIAQFLVK-QNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       307 -~G~TpLh~A~~~g~~~iv~~Ll~-~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                       .|+||||+|+..++.+++++|+. .|++++.+|.+|+||||+|...
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~  142 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN  142 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHC
Confidence             99999999999999999999997 5999999999999999999865

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.83  E-value=2.6e-20  Score=195.53  Aligned_cols=181  Identities=20%  Similarity=0.254  Sum_probs=151.9

Q ss_pred             hhHHHHHhcCCCCHHHHHhc-Cc-cccccccccccccccccCCCCcchhhhhcCCCC---CcccccccccccccCCCCch
Q 043342          169 AKWQAWQKLGAMPPEEAMQK-YI-DIVTELYPTWAAGSSLKSKRGQEDAASTDSKAP---MGPVFSSFAYEEESGNDLKM  243 (363)
Q Consensus       169 ak~~aw~~~g~t~l~~A~~~-yv-~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~---~~~ll~~~~~~~~~~~~~g~  243 (363)
                      +..+..+..|.||+|.|... .. .+++.|+..+.+. ...+..|.|+++.++..+.   +..++...+.+.+..+..|.
T Consensus       264 ~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~  342 (682)
T PHA02876        264 FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYI  342 (682)
T ss_pred             CCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCC
Confidence            34555667799999998653 43 5777777766543 3467789999998887663   22344455566677888999


Q ss_pred             HHHHHHHHc-CCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC-H
Q 043342          244 DAIHAFARE-GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR-E  321 (363)
Q Consensus       244 t~Lh~Aa~~-g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~-~  321 (363)
                      ||||+|+.. ++.++++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ .
T Consensus       343 TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~  422 (682)
T PHA02876        343 TPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPY  422 (682)
T ss_pred             cHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHH
Confidence            999999985 47889999999999999999999999999999999999999999999999999999999999998765 4


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHhc
Q 043342          322 AIAQFLVKQNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       322 ~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      .++++|+++|++++.+|..|+||||+|+.
T Consensus       423 ~~vk~Ll~~gadin~~d~~G~TpLh~Aa~  451 (682)
T PHA02876        423 MSVKTLIDRGANVNSKNKDLSTPLHYACK  451 (682)
T ss_pred             HHHHHHHhCCCCCCcCCCCCChHHHHHHH
Confidence            67999999999999999999999999986

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.83  E-value=1.7e-20  Score=194.45  Aligned_cols=164  Identities=16%  Similarity=0.178  Sum_probs=135.8

Q ss_pred             hcCccccccccccc-cccccccCCCCcchhhhhcCCC----CCcccccccccccccCCCCchHHHHHHHHcCC--HHHHH
Q 043342          187 QKYIDIVTELYPTW-AAGSSLKSKRGQEDAASTDSKA----PMGPVFSSFAYEEESGNDLKMDAIHAFAREGD--MDNLL  259 (363)
Q Consensus       187 ~~yv~~v~~Ll~~~-~~~~~~~~~~g~~~~~~a~~~~----~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~--~~~v~  259 (363)
                      ....++++.|+..+ .+.....+..|.+++|.+....    .+..++...+.+.+..+..|.||||+|++.|+  .++++
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVk  231 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIK  231 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHH
Confidence            35778899999877 4433322678999999764332    12233444556677788899999999999995  48999


Q ss_pred             HHHHcCCCCccCCCCCChHHHHH-------------------------------------HHcCCHHHHHHHHhCCCCCC
Q 043342          260 KCIENGVSVNLRDSEGRAPLHWA-------------------------------------VDRGHLNISELLVSKNADVN  302 (363)
Q Consensus       260 ~LL~~g~~vn~~d~~g~TpLh~A-------------------------------------~~~g~~~iv~~Ll~~gadin  302 (363)
                      +|+++|+++|.++..|+||||+|                                     +..|+.+++++|++.|+++|
T Consensus       232 lLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN  311 (764)
T PHA02716        232 KIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLH  311 (764)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee
Confidence            99999999999999999999975                                     34577899999999999999


Q ss_pred             CCCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhc
Q 043342          303 AKDNEGQTPLHYAVV--CDREAIAQFLVKQNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       303 ~~d~~G~TpLh~A~~--~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      .+|..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+.
T Consensus       312 ~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        312 YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            999999999999875  467899999999999999999999999999865

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.8e-20  Score=189.58  Aligned_cols=184  Identities=15%  Similarity=0.161  Sum_probs=147.9

Q ss_pred             hhhhhHHHHHhcCCCCHHHHHh----cCccccccccccccccccccCCCCcchhhhhcCC-----CCCcccccccccccc
Q 043342          166 TARAKWQAWQKLGAMPPEEAMQ----KYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSK-----APMGPVFSSFAYEEE  236 (363)
Q Consensus       166 ~~~ak~~aw~~~g~t~l~~A~~----~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~-----~~~~~ll~~~~~~~~  236 (363)
                      ..++..+..+..|.||++.|..    +..++++.|+..+++....++..|.|++|.+...     ..+..++.. +.+..
T Consensus        96 ~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~-Gadi~  174 (494)
T PHA02989         96 KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF-GVNLF  174 (494)
T ss_pred             HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc-CCCcc
Confidence            3456667777889999987643    4678999999988766455778899999865432     123333333 33333


Q ss_pred             c-CCCCchHHHHHHHHcC----CHHHHHHHHHcCCCCccCCCCCChHHHHHHHc------CCHHHHHHHHhCCCCCCCCC
Q 043342          237 S-GNDLKMDAIHAFAREG----DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDR------GHLNISELLVSKNADVNAKD  305 (363)
Q Consensus       237 ~-~~~~g~t~Lh~Aa~~g----~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~------g~~~iv~~Ll~~gadin~~d  305 (363)
                      . .+..|.||||.|++.+    +.+++++|+++|++++.++..+.|+||.++..      +...++++|+. |+++|.+|
T Consensus       175 ~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d  253 (494)
T PHA02989        175 EKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKD  253 (494)
T ss_pred             ccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCC
Confidence            3 5678999999998764    89999999999999999998899999987654      34677777654 69999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       306 ~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+
T Consensus       254 ~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~  299 (494)
T PHA02989        254 KKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKH  299 (494)
T ss_pred             CCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999999999999999999875

>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity

Probab=99.83  E-value=4.5e-21  Score=146.54  Aligned_cols=84  Identities=44%  Similarity=0.726  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCccc
Q 043342          113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI  192 (363)
Q Consensus       113 l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~~  192 (363)
                      +++.|+.|+++|++.+    .+++++++|+||+||||||.|+|+.++|+++++.+++||++|.++++|+.++||..||++
T Consensus         1 ~~~~F~~A~~~v~~~~----~~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~YV~~   76 (85)
T cd00435           1 LQEEFEAAAEKVKKLK----TKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKAYIAK   76 (85)
T ss_pred             ChHHHHHHHHHHHhCC----CCcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4688999999998865    369999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccc
Q 043342          193 VTELYPTW  200 (363)
Q Consensus       193 v~~Ll~~~  200 (363)
                      +..+++.|
T Consensus        77 ~~~l~~~~   84 (85)
T cd00435          77 VEELIAKY   84 (85)
T ss_pred             HHHHhhcc
Confidence            99998865

Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=7.2e-21  Score=181.12  Aligned_cols=176  Identities=22%  Similarity=0.287  Sum_probs=139.8

Q ss_pred             HhcCCCCHHH-HHhcCccccccccccccccccccC--------CCCcchhhhhcCCCCCc--ccccccccccccCCCCch
Q 043342          175 QKLGAMPPEE-AMQKYIDIVTELYPTWAAGSSLKS--------KRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKM  243 (363)
Q Consensus       175 ~~~g~t~l~~-A~~~yv~~v~~Ll~~~~~~~~~~~--------~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~  243 (363)
                      ...|.+|+-. |..++.++|.+|+.+.........        -.|-.++-.++..|.++  .++.......+.......
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNS  118 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNS  118 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCC
Confidence            3557788775 566888999999875432222111        12334444555555433  233333355566666667


Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 043342          244 DAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAI  323 (363)
Q Consensus       244 t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~i  323 (363)
                      |||..||..|+++++++|+++|+|++..|..|+|.||+||.+||.+|+++|++.|+|+|.++..|+|+||.|+..|+.++
T Consensus       119 tPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdi  198 (615)
T KOG0508|consen  119 TPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDI  198 (615)
T ss_pred             ccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          324 AQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       324 v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +++|+++|+.+. +|..|-|||..|+..
T Consensus       199 vq~Ll~~ga~i~-~d~~GmtPL~~Aa~t  225 (615)
T KOG0508|consen  199 VQLLLKHGAKID-VDGHGMTPLLLAAVT  225 (615)
T ss_pred             HHHHHhCCceee-ecCCCCchHHHHhhh
Confidence            999999999885 456699999988654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.82  E-value=9.4e-20  Score=189.03  Aligned_cols=187  Identities=13%  Similarity=0.120  Sum_probs=147.7

Q ss_pred             HHHHhcCCCCHHHH----HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc-------ccccccccccccCCC
Q 043342          172 QAWQKLGAMPPEEA----MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG-------PVFSSFAYEEESGND  240 (363)
Q Consensus       172 ~aw~~~g~t~l~~A----~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~-------~ll~~~~~~~~~~~~  240 (363)
                      ++.++.|.+|+|.|    ..++.++++.|+..+.+.. .++..|.||++.+...+...       .++..... .+..+ 
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~-~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~~-  102 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPL-HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIND-  102 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcc-ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCCC-
Confidence            45567899999974    2267899999999887665 47788999999888776532       12222221 22222 


Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHH--HcCCHHHHHHHHhCCCCCCCCCC---CC-------
Q 043342          241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAV--DRGHLNISELLVSKNADVNAKDN---EG-------  308 (363)
Q Consensus       241 ~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~--~~g~~~iv~~Ll~~gadin~~d~---~G-------  308 (363)
                       ..+++|.|+..|+.+++++|+++|+++|.+|..|+||||+++  ..|+.+++++|+++|+++|.+|.   .|       
T Consensus       103 -~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~  181 (661)
T PHA02917        103 -FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQ  181 (661)
T ss_pred             -cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccc
Confidence             236778899999999999999999999999999999999654  57899999999999999987654   34       


Q ss_pred             ----CcHHHHHHH-----------cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcCc----hHHHHhccCC
Q 043342          309 ----QTPLHYAVV-----------CDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDW----PWMLHAAKGT  362 (363)
Q Consensus       309 ----~TpLh~A~~-----------~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~~----~~~~~~~~~~  362 (363)
                          .||||+|+.           .++.+++++|+++|++++.+|.+|.||||+|+.+-    +.++-+..|+
T Consensus       182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~  254 (661)
T PHA02917        182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGI  254 (661)
T ss_pred             ccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCC
Confidence                599999986           46889999999999999999999999999999652    4666555554

>PHA02946 ankyin-like protein; Provisional

Probab=99.82  E-value=7.7e-20  Score=182.41  Aligned_cols=161  Identities=16%  Similarity=0.220  Sum_probs=137.4

Q ss_pred             CccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHHHHcCC--HHHHHHHHHc
Q 043342          189 YIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFAREGD--MDNLLKCIEN  264 (363)
Q Consensus       189 yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~--~~~v~~LL~~  264 (363)
                      ..++++.|+..+.+.. .++..|.|++|.++..+...  .++...+.+.+..+..|.||||+|+..++  .+++++|+++
T Consensus        51 ~~~iv~~Ll~~Gadvn-~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~  129 (446)
T PHA02946         51 DERFVEELLHRGYSPN-ETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQY  129 (446)
T ss_pred             CHHHHHHHHHCcCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            4578889998877654 46788999999988877543  33334456667789999999999988664  7899999999


Q ss_pred             CCCCcc-CCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHhCCCCCCCCCCCC
Q 043342          265 GVSVNL-RDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR--EAIAQFLVKQNADIGMKDNDG  341 (363)
Q Consensus       265 g~~vn~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~--~~iv~~Ll~~Gad~~~~d~~G  341 (363)
                      |+++|. .+..|.|||| ||..++.+++++|++.|++++.+|..|+||||+|+..++  .+++++|+++|++++.+|.+|
T Consensus       130 Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G  208 (446)
T PHA02946        130 GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDG  208 (446)
T ss_pred             CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCC
Confidence            999995 6889999998 667799999999999999999999999999999987654  689999999999999999999


Q ss_pred             CcHHHHHhcC
Q 043342          342 NSPCHVCESD  351 (363)
Q Consensus       342 ~TpL~~A~~~  351 (363)
                      .||||+|+.+
T Consensus       209 ~TpLH~Aa~~  218 (446)
T PHA02946        209 NTPLHIVCSK  218 (446)
T ss_pred             CCHHHHHHHc
Confidence            9999999964

>KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism]

Probab=99.81  E-value=4.2e-20  Score=152.88  Aligned_cols=91  Identities=43%  Similarity=0.736  Sum_probs=85.2

Q ss_pred             chHHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCc
Q 043342          111 TELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYI  190 (363)
Q Consensus       111 ~~l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv  190 (363)
                      ..+...|+.|+..++++++    +++++++|+||+||||||+|+|+.++|++|++.+|+||++|+++|+|+.++||+.|+
T Consensus         3 ~~~~~~Fe~a~~~~~~l~~----~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~eA~~~Yv   78 (142)
T KOG0817|consen    3 ATLEAKFEAAAEAVKNLKK----KPSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEEAMEAYV   78 (142)
T ss_pred             chHHHHHHHHHHHHHhccc----CCCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4578999999999999875    499999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccc
Q 043342          191 DIVTELYPTWAAGSS  205 (363)
Q Consensus       191 ~~v~~Ll~~~~~~~~  205 (363)
                      +++..|++.|.....
T Consensus        79 ~~~~~l~~~~~~~~~   93 (142)
T KOG0817|consen   79 EKVEELIPKYGAEAE   93 (142)
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999876554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=6.2e-20  Score=165.34  Aligned_cols=127  Identities=28%  Similarity=0.430  Sum_probs=118.3

Q ss_pred             cccccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 043342          225 GPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK  304 (363)
Q Consensus       225 ~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~  304 (363)
                      ..++.....+.+..|..|.+|||+||+.|+..+++.||.+|+.+|..+...-||||+|+..||.++|+.|+++.+|+|+.
T Consensus        17 rlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnav   96 (448)
T KOG0195|consen   17 RLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAV   96 (448)
T ss_pred             EEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchh
Confidence            34555555667788899999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       305 d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +..|+|||||||..|...|++-|+..||.+++.|++|.|||+.|-..
T Consensus        97 nehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~  143 (448)
T KOG0195|consen   97 NEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPM  143 (448)
T ss_pred             hccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchH
Confidence            99999999999999999999999999999999999999999988544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=2.3e-19  Score=155.67  Aligned_cols=109  Identities=23%  Similarity=0.335  Sum_probs=53.4

Q ss_pred             chHHHHHHHHcCCH----HHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHH---HHHHHHhCCCCCCCCC-CCCCcHHH
Q 043342          242 KMDAIHAFAREGDM----DNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN---ISELLVSKNADVNAKD-NEGQTPLH  313 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~----~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~---iv~~Ll~~gadin~~d-~~G~TpLh  313 (363)
                      +.++||.||+.|+.    +++++|++.|..++.+|..|+||||+|+..|+.+   ++++|+..|+++|.+| ..|+||||
T Consensus        20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh   99 (166)
T PHA02743         20 EQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLH   99 (166)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHH
Confidence            34455555555554    2333344444444545555555555555544432   2445555555555554 24555555


Q ss_pred             HHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHhc
Q 043342          314 YAVVCDREAIAQFLVK-QNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       314 ~A~~~g~~~iv~~Ll~-~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      +|+..++.+++++|+. .|++++.+|..|.||||+|+.
T Consensus       100 ~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~  137 (166)
T PHA02743        100 IAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYK  137 (166)
T ss_pred             HHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHH
Confidence            5555555555555552 455555555555555555543

>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []

Probab=99.80  E-value=2.3e-20  Score=144.21  Aligned_cols=86  Identities=48%  Similarity=0.872  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCccc
Q 043342          113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI  192 (363)
Q Consensus       113 l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~~  192 (363)
                      |++.|..|+.+|++.+..  ..++++++|+||||||||+.|+|+.++|+++++.+++||++|.++++|+.++||+.|+++
T Consensus         1 Le~~F~~A~~~v~~~~~~--~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~~~Yi~~   78 (87)
T PF00887_consen    1 LEEEFEAAVEFVSNLPKK--SQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAMREYIEL   78 (87)
T ss_dssp             HHHHHHHHHHHHHHSSSC--STS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcccc--CCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            689999999999987653  579999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccc
Q 043342          193 VTELYPTW  200 (363)
Q Consensus       193 v~~Ll~~~  200 (363)
                      +..++++|
T Consensus        79 v~~~~~~~   86 (87)
T PF00887_consen   79 VEELIPKY   86 (87)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99998754

ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.79  E-value=1.2e-19  Score=182.55  Aligned_cols=213  Identities=20%  Similarity=0.224  Sum_probs=156.6

Q ss_pred             CCChhhHhHHhhhhhccccCCCCCCCCchhh---hhhhhhHHHHHhcCCCCHHHHHh-cCccccccccccccccccc---
Q 043342          134 KVSNDVQLQLYALYKIATEGPCSAPQPSALK---MTARAKWQAWQKLGAMPPEEAMQ-KYIDIVTELYPTWAAGSSL---  206 (363)
Q Consensus       134 ~~~~~~~L~lyalykqAt~G~~~~~~p~~~~---~~~~ak~~aw~~~g~t~l~~A~~-~yv~~v~~Ll~~~~~~~~~---  206 (363)
                      .++....--.|-++..+..|.-.... .+++   .......+..+..+.+|+|.|.+ +.++.++.++.++......   
T Consensus       179 ~~~K~~~~~~~~iH~aa~s~s~e~mE-i~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~  257 (929)
T KOG0510|consen  179 DPCKSDIDGNFPIHEAARSGSKECME-IFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLD  257 (929)
T ss_pred             CCCcccCcCCchHHHHHHhcchhhhh-hhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhH
Confidence            34444443444455555555432211 1222   33445566777888899998766 5677777777766544332   


Q ss_pred             -----------cCCCCcchhhhhcCCCCCcc--cccccccccccCCCCchHHHHHHHHcCCHHHHHHHHH-cC-CCCccC
Q 043342          207 -----------KSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIE-NG-VSVNLR  271 (363)
Q Consensus       207 -----------~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~g-~~vn~~  271 (363)
                                 .+.+|.||+|.+++.|..+.  ++...+...+.++.++.||||.|+++|++..|+.||+ .+ ..+|..
T Consensus       258 ~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~  337 (929)
T KOG0510|consen  258 AMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNES  337 (929)
T ss_pred             HHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccc
Confidence                       34578889998888886653  4555566667778888899999999999999999988 44 346778


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          272 DSEGRAPLHWAVDRGHLNISELLVSKNADVN---AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV  347 (363)
Q Consensus       272 d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin---~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~  347 (363)
                      |..|+||||+|+..||..+++.|+++|+..+   ..|.+|.||||+|+..|+..+|++|+.+||++..+|..|.|++++
T Consensus       338 D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  338 DLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             cccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence            8889999999999999999999999998876   458889999999999999999999999999999999999888884

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=9.8e-19  Score=164.40  Aligned_cols=108  Identities=21%  Similarity=0.239  Sum_probs=101.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccCC----CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHH
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLRD----SEGRAPLHWAVDRGHLNISELLVSKNADVNAK-DNEGQTPLHYAVV  317 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d----~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~-d~~G~TpLh~A~~  317 (363)
                      .++||.|++.|+.++++.|+++|+++|.++    ..|.||||+|+..++.+++++|+++|+++|.+ +..|.||||+|+.
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~  113 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL  113 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence            467888888899999999999999999874    58999999999999999999999999999986 4689999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhc
Q 043342          318 CDREAIAQFLVKQNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       318 ~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      .++.+++++|+.+|++++.+|..|.||||+|+.
T Consensus       114 ~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~  146 (300)
T PHA02884        114 HGCLKCLEILLSYGADINIQTNDMVTPIELALM  146 (300)
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            999999999999999999999999999999976

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.79  E-value=1.1e-19  Score=158.05  Aligned_cols=163  Identities=20%  Similarity=0.199  Sum_probs=139.4

Q ss_pred             cCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCC
Q 043342          188 KYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVS  267 (363)
Q Consensus       188 ~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~  267 (363)
                      ..+..+..++.++..++. -+..++++.+.+.-+-.+........+..+..|..|.|||.+|++.|++++|++||+.|++
T Consensus       107 ~s~~k~sttltN~~rgne-vs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd  185 (296)
T KOG0502|consen  107 GSVDKVSTTLTNGARGNE-VSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD  185 (296)
T ss_pred             CCcceeeeeecccccCCc-cccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCC
Confidence            467777777777766655 3334555555444433444444555566788899999999999999999999999999999


Q ss_pred             CccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          268 VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV  347 (363)
Q Consensus       268 vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~  347 (363)
                      ++...+...++|++|+..|..+||++||.++.|+|.-|.+|.|||-||++-++.+||+.|+..||+++..+..|++++++
T Consensus       186 p~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdl  265 (296)
T KOG0502|consen  186 PDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDL  265 (296)
T ss_pred             hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC
Q 043342          348 CESD  351 (363)
Q Consensus       348 A~~~  351 (363)
                      |+.-
T Consensus       266 AVal  269 (296)
T KOG0502|consen  266 AVAL  269 (296)
T ss_pred             HHHh
Confidence            9754

>PHA02795 ankyrin-like protein; Provisional

Probab=99.79  E-value=4.7e-19  Score=173.12  Aligned_cols=178  Identities=14%  Similarity=0.029  Sum_probs=140.7

Q ss_pred             hhhHHHHHhcCCCCHHHHHhcCccccccccccccccc-----cccCCCCcchhhhhcC--CCC--CcccccccccccccC
Q 043342          168 RAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGS-----SLKSKRGQEDAASTDS--KAP--MGPVFSSFAYEEESG  238 (363)
Q Consensus       168 ~ak~~aw~~~g~t~l~~A~~~yv~~v~~Ll~~~~~~~-----~~~~~~g~~~~~~a~~--~~~--~~~ll~~~~~~~~~~  238 (363)
                      +++.++....+    -.|...+.++++.|+..+....     -.+.....+.+|.+..  .+.  +..++...+.+.+. 
T Consensus        72 ~~~i~~~~~~~----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~-  146 (437)
T PHA02795         72 RDNIDQYIVDR----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK-  146 (437)
T ss_pred             Ccchhhhhhhh----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC-
Confidence            34555555444    3466788899999999887644     0255667888886655  332  22333344444443 


Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCC-ccC-----CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 043342          239 NDLKMDAIHAFAREGDMDNLLKCIENGVSV-NLR-----DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL  312 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~v-n~~-----d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpL  312 (363)
                       ..+.||||.|+..|+.+++++|+++|++. +..     +..+.|++|.|...++.+++++|+.+|+++|.+|..|+|||
T Consensus       147 -~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpL  225 (437)
T PHA02795        147 -IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLL  225 (437)
T ss_pred             -CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHH
Confidence             23479999999999999999999999753 322     13478999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          313 HYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       313 h~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+.+
T Consensus       226 h~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~  264 (437)
T PHA02795        226 YRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDR  264 (437)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            999999999999999999999999999999999999864

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=5.9e-19  Score=148.32  Aligned_cols=141  Identities=20%  Similarity=0.311  Sum_probs=116.2

Q ss_pred             cCCCCCcccccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 043342          219 DSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN  298 (363)
Q Consensus       219 ~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  298 (363)
                      ...+.+..+++......+.+|.++.||||.|+.+|++++++.|+..|++++.+...|+||||-||.-.+.+++.+||++|
T Consensus        74 nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhg  153 (228)
T KOG0512|consen   74 NRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHG  153 (228)
T ss_pred             ccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhcc
Confidence            33445667777778888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCH-HHHHHHH-hCCCCCCCCCCCCCcHHHHHhcC--chHHHHhc
Q 043342          299 ADVNAKDNEGQTPLHYAVVCDRE-AIAQFLV-KQNADIGMKDNDGNSPCHVCESD--WPWMLHAA  359 (363)
Q Consensus       299 adin~~d~~G~TpLh~A~~~g~~-~iv~~Ll-~~Gad~~~~d~~G~TpL~~A~~~--~~~~~~~~  359 (363)
                      +|||+......||||+|+.+.+. ..+.+|+ ..++++..++..+.||+++|-+-  ...+-+..
T Consensus       154 aDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~~  218 (228)
T KOG0512|consen  154 ADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEIV  218 (228)
T ss_pred             CcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHHH
Confidence            99999988899999999987654 4555555 46788888999999999998765  34444433

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=1.6e-18  Score=134.19  Aligned_cols=89  Identities=35%  Similarity=0.680  Sum_probs=83.4

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 043342          246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQ  325 (363)
Q Consensus       246 Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~  325 (363)
                      ||+||+.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988876    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCC
Q 043342          326 FLVKQNADIGMKD  338 (363)
Q Consensus       326 ~Ll~~Gad~~~~d  338 (363)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.6e-18  Score=150.47  Aligned_cols=108  Identities=18%  Similarity=0.184  Sum_probs=99.3

Q ss_pred             ccCCCCchHHHHHHHHcCCHHH---HHHHHHcCCCCccCC-CCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCc
Q 043342          236 ESGNDLKMDAIHAFAREGDMDN---LLKCIENGVSVNLRD-SEGRAPLHWAVDRGHLNISELLVS-KNADVNAKDNEGQT  310 (363)
Q Consensus       236 ~~~~~~g~t~Lh~Aa~~g~~~~---v~~LL~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv~~Ll~-~gadin~~d~~G~T  310 (363)
                      +..+..|+||||+|+..|+.+.   +++|++.|+++|.++ ..|.||||+|+..++.+++++|+. .|++++.+|..|.|
T Consensus        51 ~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~t  130 (166)
T PHA02743         51 HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHET  130 (166)
T ss_pred             hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCC
Confidence            4567789999999999988654   789999999999998 489999999999999999999995 79999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCc
Q 043342          311 PLHYAVVCDREAIAQFLVKQNADIGMKDNDGNS  343 (363)
Q Consensus       311 pLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~T  343 (363)
                      |||+|+..++.+++++|+++|++++.++..|..
T Consensus       131 pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        131 AYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            999999999999999999999999999988753

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=8.3e-19  Score=176.44  Aligned_cols=184  Identities=23%  Similarity=0.341  Sum_probs=109.8

Q ss_pred             hhhhHHHHHhcCCCCHHHHHhc-CccccccccccccccccccCCCCcchhhhhcCCC---CCccccccccc----ccccC
Q 043342          167 ARAKWQAWQKLGAMPPEEAMQK-YIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKA---PMGPVFSSFAY----EEESG  238 (363)
Q Consensus       167 ~~ak~~aw~~~g~t~l~~A~~~-yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~---~~~~ll~~~~~----~~~~~  238 (363)
                      .++..+.-++.+.||+|.|... ..+..+.|+..+.+. ...+.++..+.|.++..+   .++..+...++    ..+..
T Consensus       143 ~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~  221 (929)
T KOG0510|consen  143 YGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFD  221 (929)
T ss_pred             hcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccc
Confidence            4477778888888898886654 445445555544443 335666777766555544   33333332222    22334


Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCC---------------CccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 043342          239 NDLKMDAIHAFAREGDMDNLLKCIENGVS---------------VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA  303 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~---------------vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~  303 (363)
                      +..+.+|||.|+..|+.+.++.+|+.|..               +|..|.+|.||||+||+.|+.+.+..|+..|+++|.
T Consensus       222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~  301 (929)
T KOG0510|consen  222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS  301 (929)
T ss_pred             cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc
Confidence            55566666666666666666666665421               133455666666666666666666666666666666


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHh-CC-CCCCCCCCCCCcHHHHHhcC
Q 043342          304 KDNEGQTPLHYAVVCDREAIAQFLVK-QN-ADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       304 ~d~~G~TpLh~A~~~g~~~iv~~Ll~-~G-ad~~~~d~~G~TpL~~A~~~  351 (363)
                      ++.++.||||.|+..|+.++|+.||+ .| ..+|..|..|.||||+|+++
T Consensus       302 kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~  351 (929)
T KOG0510|consen  302 KNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKS  351 (929)
T ss_pred             cCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhc
Confidence            66666666666666666666666665 33 34555666666666666544

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=2.2e-18  Score=159.77  Aligned_cols=213  Identities=20%  Similarity=0.237  Sum_probs=117.5

Q ss_pred             ccccccchHHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhcccc-CCCCC-CCCchhh-----------hhhhhhH
Q 043342          105 WEGVESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATE-GPCSA-PQPSALK-----------MTARAKW  171 (363)
Q Consensus       105 ~e~~e~~~l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~-G~~~~-~~p~~~~-----------~~~~ak~  171 (363)
                      -|..+.++|-+....|+..+.+...... .++.+++=.-|..-.+-.. -.|+. ..|-.+.           -.-++-+
T Consensus       183 ~e~~~r~els~~l~~a~~~~~~si~~p~-alt~~~lk~a~~tv~~eW~~~a~~s~a~pe~V~~~l~~f~als~~lL~yvV  261 (452)
T KOG0514|consen  183 SEPRKRTELSQSLKSALKILNDSILKPL-ALTSQSLKSAKATVQHEWFTNSSTSSSDPEQVEDYLAYFEALSPPLLEYVV  261 (452)
T ss_pred             ccchhhhHhhHHHHHHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhcChHHHHHHh
Confidence            4666778899999999999988765422 3444443333332222111 11111 1221111           0111223


Q ss_pred             HHHHhcCCCCHHHHHh-cCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHH
Q 043342          172 QAWQKLGAMPPEEAMQ-KYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFA  250 (363)
Q Consensus       172 ~aw~~~g~t~l~~A~~-~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa  250 (363)
                      |--+..|+|.+|++.. .+.++|+.||.                               ...++.+..|.-|.||+.+++
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLD-------------------------------SgvC~VD~qNrAGYtpiMLaA  310 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLD-------------------------------SGVCDVDQQNRAGYTPVMLAA  310 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhc-------------------------------cCcccccccccccccHHHHHH
Confidence            3334444444444322 33444444444                               444555556666666666665


Q ss_pred             Hc-----CCHHHHHHHHHcCCCCccCCC-CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 043342          251 RE-----GDMDNLLKCIENGVSVNLRDS-EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIA  324 (363)
Q Consensus       251 ~~-----g~~~~v~~LL~~g~~vn~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv  324 (363)
                      ..     .+..+|..|+..| ++|.+-. .|+|+|++|+.+|+.++++.||..|+|||.+|.+|.|+|+.||.+||.+|+
T Consensus       311 LA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEiv  389 (452)
T KOG0514|consen  311 LAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIV  389 (452)
T ss_pred             HHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHH
Confidence            43     2345566666555 5665544 366666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhC-CCCCCCCCCCCCcHHHHHhc
Q 043342          325 QFLVKQ-NADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       325 ~~Ll~~-Gad~~~~d~~G~TpL~~A~~  350 (363)
                      ++||.. ++|+...|.+|.|+|.+|-.
T Consensus       390 klLLA~p~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  390 KLLLAVPSCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             HHHhccCcccceeecCCCchhhhhHHh
Confidence            666643 56666666666666666643

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.77  E-value=2.4e-18  Score=174.12  Aligned_cols=167  Identities=16%  Similarity=0.149  Sum_probs=100.1

Q ss_pred             hhHHHHHhcCCCCHHHH-Hhc--CccccccccccccccccccCCCCcchhhhhcCCCC--------Cccccccccccccc
Q 043342          169 AKWQAWQKLGAMPPEEA-MQK--YIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAP--------MGPVFSSFAYEEES  237 (363)
Q Consensus       169 ak~~aw~~~g~t~l~~A-~~~--yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~--------~~~ll~~~~~~~~~  237 (363)
                      +..+.. ..|.++++.+ ...  ..++++.|+..+++.... . .+.||++.+...+.        +..++...+.+.+.
T Consensus        27 advN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~-~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~  103 (494)
T PHA02989         27 FDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYK-G-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINL  103 (494)
T ss_pred             CCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCC-C-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCC
Confidence            344443 3455666542 222  356777777766544321 1 34566665433221        11233334445556


Q ss_pred             CCCCchHHHHHHHHc---CCHHHHHHHHHcCCCC-ccCCCCCChHHHHHHHc--CCHHHHHHHHhCCCCCCC-CCCCCCc
Q 043342          238 GNDLKMDAIHAFARE---GDMDNLLKCIENGVSV-NLRDSEGRAPLHWAVDR--GHLNISELLVSKNADVNA-KDNEGQT  310 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~---g~~~~v~~LL~~g~~v-n~~d~~g~TpLh~A~~~--g~~~iv~~Ll~~gadin~-~d~~G~T  310 (363)
                      .+..|.||||.|+..   |+.+++++|+++|+++ +.+|..|+||||+|+..  ++.+++++|+++|++++. .+..|.|
T Consensus       104 ~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~t  183 (494)
T PHA02989        104 KTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLT  183 (494)
T ss_pred             CCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCC
Confidence            666677777766654   4667777777777777 66777777777776543  467777777777777776 5667777


Q ss_pred             HHHHHHHcC----CHHHHHHHHhCCCCCCCCC
Q 043342          311 PLHYAVVCD----REAIAQFLVKQNADIGMKD  338 (363)
Q Consensus       311 pLh~A~~~g----~~~iv~~Ll~~Gad~~~~d  338 (363)
                      |||+|+..+    +.+++++|+++|++++.+|
T Consensus       184 pL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~  215 (494)
T PHA02989        184 PMNIYLRNDIDVISIKVIKYLIKKGVNIETNN  215 (494)
T ss_pred             hHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence            777776543    6677777777766655443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.77  E-value=8.8e-19  Score=185.47  Aligned_cols=190  Identities=26%  Similarity=0.301  Sum_probs=161.9

Q ss_pred             chhhhhhhhhHHHHHhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCCCCccccccc--cccccc
Q 043342          161 SALKMTARAKWQAWQKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSF--AYEEES  237 (363)
Q Consensus       161 ~~~~~~~~ak~~aw~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~--~~~~~~  237 (363)
                      .+.....+...++-.+.|.|+++.|. .+..+.+.-++..|. ......+.+.++++.+...+.+......+  ......
T Consensus       457 ~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~-~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~  535 (1143)
T KOG4177|consen  457 ARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGA-NDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDL  535 (1143)
T ss_pred             hhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCC-ccCccchhccchhhhhhhhhhHHHHHHHhhcCCceeh
Confidence            34445566778888899999999864 566777777777663 34446788899999888887665444444  445566


Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 043342          238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVV  317 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~  317 (363)
                      ++..|.||||.||.+|+..+|++||++|++++.++..|+||||.||..|+.+|+.+|+++|+++|..|.+|.||||+|+.
T Consensus       536 ~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~  615 (1143)
T KOG4177|consen  536 RTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVR  615 (1143)
T ss_pred             hcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHH
Confidence            77888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHhcC
Q 043342          318 CDREAIAQFLVKQNAD-----IGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       318 ~g~~~iv~~Ll~~Gad-----~~~~d~~G~TpL~~A~~~  351 (363)
                      .|+.+++++|+..++.     ....+..|.+|..++..-
T Consensus       616 lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  616 LGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             hcccchhhHHHhccCccccccchhhhhcccChhhHHHHh
Confidence            9999999999999998     778889999999887543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.76  E-value=2.3e-18  Score=174.10  Aligned_cols=162  Identities=21%  Similarity=0.214  Sum_probs=132.6

Q ss_pred             CccccccccccccccccccCCCCcchhhhhcCC-------CCCcccccccccccccCCCCchHHHHHHHHcC---CHHHH
Q 043342          189 YIDIVTELYPTWAAGSSLKSKRGQEDAASTDSK-------APMGPVFSSFAYEEESGNDLKMDAIHAFAREG---DMDNL  258 (363)
Q Consensus       189 yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~-------~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g---~~~~v  258 (363)
                      ..++++.|+..+.+... .+..|.||++.+...       ..+..++...+.+.+..+..|.||||+|+..+   +.+++
T Consensus        50 ~~~iv~~Ll~~Gadvn~-~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv  128 (489)
T PHA02798         50 STDIVKLFINLGANVNG-LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEIL  128 (489)
T ss_pred             CHHHHHHHHHCCCCCCC-CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHH
Confidence            57889999998775543 567888999865432       12334444556677888889999999999976   78999


Q ss_pred             HHHHHcCCCCccCCCCCChHHHHHHHcCC---HHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHc----CCHHHHHHHHhC
Q 043342          259 LKCIENGVSVNLRDSEGRAPLHWAVDRGH---LNISELLVSKNADVNAKD-NEGQTPLHYAVVC----DREAIAQFLVKQ  330 (363)
Q Consensus       259 ~~LL~~g~~vn~~d~~g~TpLh~A~~~g~---~~iv~~Ll~~gadin~~d-~~G~TpLh~A~~~----g~~~iv~~Ll~~  330 (363)
                      ++|+++|++++.+|..|.||||+|+..++   .+++++|+++|+++|.++ ..|.||||.++..    ++.+++++|+++
T Consensus       129 ~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~  208 (489)
T PHA02798        129 LFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDN  208 (489)
T ss_pred             HHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHC
Confidence            99999999999999999999999999988   999999999999999885 5789999998764    468888888887


Q ss_pred             CCC---------------------------------------CCCCCCCCCcHHHHHhcC
Q 043342          331 NAD---------------------------------------IGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       331 Gad---------------------------------------~~~~d~~G~TpL~~A~~~  351 (363)
                      |++                                       +|.+|..|+||||+|+..
T Consensus       209 Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~  268 (489)
T PHA02798        209 GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSH  268 (489)
T ss_pred             CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHc
Confidence            764                                       455677899999999854

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=1.7e-18  Score=148.19  Aligned_cols=114  Identities=22%  Similarity=0.287  Sum_probs=79.8

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCC-----CccCCCCCChHHHHHHHcCCH---HHHHHHHhCCCCCCCCC-CCC
Q 043342          238 GNDLKMDAIHAFAREGDMDNLLKCIENGVS-----VNLRDSEGRAPLHWAVDRGHL---NISELLVSKNADVNAKD-NEG  308 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~-----vn~~d~~g~TpLh~A~~~g~~---~iv~~Ll~~gadin~~d-~~G  308 (363)
                      .+..|.||||+||+.|+...+........+     ++.+|..|.||||+|+..|+.   +++++|++.|+++|.++ ..|
T Consensus        13 ~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g   92 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFG   92 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCC
Confidence            455678888888888873222111111111     234577788888888887765   35777888888888877 478


Q ss_pred             CcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHhcC
Q 043342          309 QTPLHYAVVCDREAIAQFLVK-QNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       309 ~TpLh~A~~~g~~~iv~~Ll~-~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +||||+|+..++.+++++|+. .|++++.+|..|.||||+|+..
T Consensus        93 ~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~  136 (154)
T PHA02736         93 NTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACER  136 (154)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHc
Confidence            888888888888888888886 4788888888888888888754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.76  E-value=3.6e-18  Score=182.55  Aligned_cols=167  Identities=17%  Similarity=0.146  Sum_probs=138.9

Q ss_pred             CCHHH-HHhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHHHHcCCHH
Q 043342          180 MPPEE-AMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFAREGDMD  256 (363)
Q Consensus       180 t~l~~-A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~  256 (363)
                      .+++. |..++.++++.|+..+.+.. ..+..|.|++|.++..+...  .++...+.+.+..+..|.||||+|+..|+.+
T Consensus       527 ~~L~~Aa~~g~~~~l~~Ll~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~  605 (823)
T PLN03192        527 SNLLTVASTGNAALLEELLKAKLDPD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK  605 (823)
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            44554 56678888999988776544 46778899999888887544  2333445666778888999999999999999


Q ss_pred             HHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 043342          257 NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM  336 (363)
Q Consensus       257 ~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~  336 (363)
                      +++.|+..+...+.  ..+.++||+|+..|+.++++.|+++|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.
T Consensus       606 iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~  683 (823)
T PLN03192        606 IFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK  683 (823)
T ss_pred             HHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC
Confidence            99999987765443  3467899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-CcHHHHHh
Q 043342          337 KDNDG-NSPCHVCE  349 (363)
Q Consensus       337 ~d~~G-~TpL~~A~  349 (363)
                      +|..| .||++++.
T Consensus       684 ~~~~g~~t~~~l~~  697 (823)
T PLN03192        684 ANTDDDFSPTELRE  697 (823)
T ss_pred             CCCCCCCCHHHHHH
Confidence            99988 99998774

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.76  E-value=6.5e-19  Score=167.87  Aligned_cols=149  Identities=23%  Similarity=0.281  Sum_probs=126.5

Q ss_pred             CCCcchhhhhcCCCCCc---cccccccccccc--------CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCCh
Q 043342          209 KRGQEDAASTDSKAPMG---PVFSSFAYEEES--------GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRA  277 (363)
Q Consensus       209 ~~g~~~~~~a~~~~~~~---~ll~~~~~~~~~--------~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~T  277 (363)
                      .+|.+|+.+++..|...   .++.......+.        ..-.|-+||-.|+..|++++|+.|+.+|+++|.......|
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt  119 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNST  119 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCc
Confidence            45567888888887543   333333322222        2345788999999999999999999999999999988999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC--chHH
Q 043342          278 PLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD--WPWM  355 (363)
Q Consensus       278 pLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~--~~~~  355 (363)
                      ||--||..|+++++++|+++|+|++..|..|.|.||+||..|+.+|+++|++.|||+|.++..|+|+||.|++.  .+-+
T Consensus       120 PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdiv  199 (615)
T KOG0508|consen  120 PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIV  199 (615)
T ss_pred             cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999854  4444


Q ss_pred             HH
Q 043342          356 LH  357 (363)
Q Consensus       356 ~~  357 (363)
                      +.
T Consensus       200 q~  201 (615)
T KOG0508|consen  200 QL  201 (615)
T ss_pred             HH
Confidence            43

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=1.6e-18  Score=145.68  Aligned_cols=108  Identities=29%  Similarity=0.412  Sum_probs=103.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-CccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 043342          244 DAIHAFAREGDMDNLLKCIENGVS-VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREA  322 (363)
Q Consensus       244 t~Lh~Aa~~g~~~~v~~LL~~g~~-vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~  322 (363)
                      -.+.+|+..+.+..|+.||+..++ +|.+|.+|+||||-|+++||.+|++.|+..|++++++...||||||.||..++.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            457788999999999999998777 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          323 IAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       323 iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+-+||++|+|+|+......||||+|+.+
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~  173 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGN  173 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcc
Confidence            99999999999999999999999999866

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.75  E-value=1.6e-18  Score=148.28  Aligned_cols=100  Identities=18%  Similarity=0.234  Sum_probs=92.1

Q ss_pred             cCCCCchHHHHHHHHcCCH---HHHHHHHHcCCCCccCCC-CCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcH
Q 043342          237 SGNDLKMDAIHAFAREGDM---DNLLKCIENGVSVNLRDS-EGRAPLHWAVDRGHLNISELLVS-KNADVNAKDNEGQTP  311 (363)
Q Consensus       237 ~~~~~g~t~Lh~Aa~~g~~---~~v~~LL~~g~~vn~~d~-~g~TpLh~A~~~g~~~iv~~Ll~-~gadin~~d~~G~Tp  311 (363)
                      ..+..|.||||+|+..|+.   +++++|++.|+++|.++. .|.||||+|+..++.+++++|+. .|++++.+|..|+||
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tp  129 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTP  129 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCH
Confidence            3577899999999999987   468899999999999984 89999999999999999999997 499999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCC
Q 043342          312 LHYAVVCDREAIAQFLVKQNADIGM  336 (363)
Q Consensus       312 Lh~A~~~g~~~iv~~Ll~~Gad~~~  336 (363)
                      ||+|+..|+.+++++|+++|+++++
T Consensus       130 L~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736        130 YYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999999999999999998753

>PHA02795 ankyrin-like protein; Provisional

Probab=99.75  E-value=2.3e-18  Score=168.30  Aligned_cols=164  Identities=18%  Similarity=0.055  Sum_probs=133.8

Q ss_pred             HHHhcCCCCHHHHHh---cCccccccccccccccccccCCCCcchhhhhcCCC---CCcccccccccccccC-----CCC
Q 043342          173 AWQKLGAMPPEEAMQ---KYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKA---PMGPVFSSFAYEEESG-----NDL  241 (363)
Q Consensus       173 aw~~~g~t~l~~A~~---~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~---~~~~ll~~~~~~~~~~-----~~~  241 (363)
                      .....+.+++|.++.   +++++++.|+.++++..   .+++.++++.+...+   .+..+++......+..     +..
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn---~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIY---KIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCC---CCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence            455667889998765   78999999999776553   355678888777544   2333333332222222     134


Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC-
Q 043342          242 KMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR-  320 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~-  320 (363)
                      +.+++|.++..++.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+ 
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~  267 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSV  267 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCc
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999999999984 


Q ss_pred             -------HHHHHHHHhCCCCCCCCCC
Q 043342          321 -------EAIAQFLVKQNADIGMKDN  339 (363)
Q Consensus       321 -------~~iv~~Ll~~Gad~~~~d~  339 (363)
                             .+++++|+++|++++....
T Consensus       268 ~~~~~~~~eIvelLL~~gadI~~~~~  293 (437)
T PHA02795        268 IARRETHLKILEILLREPLSIDCIKL  293 (437)
T ss_pred             ccccccHHHHHHHHHhCCCCCCchhH
Confidence                   6999999999999987654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.73  E-value=2.1e-17  Score=176.58  Aligned_cols=139  Identities=17%  Similarity=0.224  Sum_probs=113.8

Q ss_pred             CcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCH
Q 043342          211 GQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHL  288 (363)
Q Consensus       211 g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~  288 (363)
                      ..++++.++..+...  ..+...+.+.+..|..|.||||+|+..|+.++++.|+++|+++|.+|..|.||||+|+..|+.
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~  604 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH  604 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence            345566666555432  222233455677788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          289 NISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       289 ~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +++++|+..++..+.  ..|.++||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+.+
T Consensus       605 ~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~  665 (823)
T PLN03192        605 KIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAE  665 (823)
T ss_pred             HHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            999999887766543  4567899999999999999999999999999999999999999876

>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]

Probab=99.71  E-value=1e-17  Score=120.28  Aligned_cols=82  Identities=35%  Similarity=0.528  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCccc
Q 043342          113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI  192 (363)
Q Consensus       113 l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~~  192 (363)
                      +..+|++|..-|+.++.    +|+++++|+||+||||+++|+.+..+|++|++.+++||+||..+.+.+.++|.++|+.+
T Consensus         2 ~s~~Feqa~~dV~~L~~----kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~qeYial   77 (87)
T COG4281           2 LSTRFEQAQTDVKELSE----KPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIAL   77 (87)
T ss_pred             hhhHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHHHhhccCccHHHHHHHHHHH
Confidence            56789999999998764    69999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccc
Q 043342          193 VTELYP  198 (363)
Q Consensus       193 v~~Ll~  198 (363)
                      |.+|..
T Consensus        78 VeeLka   83 (87)
T COG4281          78 VEELKA   83 (87)
T ss_pred             HHHHHh
Confidence            998864

>PHA02730 ankyrin-like protein; Provisional

Probab=99.71  E-value=4.5e-17  Score=166.37  Aligned_cols=118  Identities=17%  Similarity=0.176  Sum_probs=101.7

Q ss_pred             ccccccCCCCchHHHHHHHHcCC----HHHHHHHHHcCC--CCccCCCCCChHHHH---HHHcC---------CHHHHHH
Q 043342          232 AYEEESGNDLKMDAIHAFAREGD----MDNLLKCIENGV--SVNLRDSEGRAPLHW---AVDRG---------HLNISEL  293 (363)
Q Consensus       232 ~~~~~~~~~~g~t~Lh~Aa~~g~----~~~v~~LL~~g~--~vn~~d~~g~TpLh~---A~~~g---------~~~iv~~  293 (363)
                      +.+.+.. ..|.||||+|+..++    .+++++|+++|+  ++|.+|..|.||||.   |...+         ..+++++
T Consensus       369 GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~  447 (672)
T PHA02730        369 GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDI  447 (672)
T ss_pred             CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHH
Confidence            3444443 678999999998875    899999999987  689999999999994   33232         2357999


Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHhc
Q 043342          294 LVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDN-DGNSPCHVCES  350 (363)
Q Consensus       294 Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~-~G~TpL~~A~~  350 (363)
                      |+.+|+++|.+|..|+||||+|+..++.+++++|+++||+++.+|. .|.||||+|+.
T Consensus       448 LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        448 LSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             HHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHH
Confidence            9999999999999999999999999999999999999999999997 59999999974

>PHA02741 hypothetical protein; Provisional

Probab=99.70  E-value=8.2e-17  Score=140.05  Aligned_cols=100  Identities=23%  Similarity=0.320  Sum_probs=92.0

Q ss_pred             cccCCCCchHHHHHHHHcCC----HHHHHHHHHcCCCCccCCC-CCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCC
Q 043342          235 EESGNDLKMDAIHAFAREGD----MDNLLKCIENGVSVNLRDS-EGRAPLHWAVDRGHLNISELLVS-KNADVNAKDNEG  308 (363)
Q Consensus       235 ~~~~~~~g~t~Lh~Aa~~g~----~~~v~~LL~~g~~vn~~d~-~g~TpLh~A~~~g~~~iv~~Ll~-~gadin~~d~~G  308 (363)
                      .+..+..|.||||+|+..|+    .+++++|+..|+++|.++. .|.||||+|+..++.+++++|+. .|++++.+|..|
T Consensus        53 in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g  132 (169)
T PHA02741         53 LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADN  132 (169)
T ss_pred             hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC
Confidence            35667789999999999998    5889999999999999985 89999999999999999999997 599999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCC
Q 043342          309 QTPLHYAVVCDREAIAQFLVKQNADI  334 (363)
Q Consensus       309 ~TpLh~A~~~g~~~iv~~Ll~~Gad~  334 (363)
                      +||||+|+..++.+++++|+++++..
T Consensus       133 ~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        133 KSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999987654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.70  E-value=3e-17  Score=152.21  Aligned_cols=119  Identities=24%  Similarity=0.353  Sum_probs=106.1

Q ss_pred             ccccccCCCCchHHHHHHHHcCCHHHHHHHHHcC-CCCccCCCCCChHHHHHHHc-----CCHHHHHHHHhCCCCCCCCC
Q 043342          232 AYEEESGNDLKMDAIHAFAREGDMDNLLKCIENG-VSVNLRDSEGRAPLHWAVDR-----GHLNISELLVSKNADVNAKD  305 (363)
Q Consensus       232 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g-~~vn~~d~~g~TpLh~A~~~-----g~~~iv~~Ll~~gadin~~d  305 (363)
                      .+..+..|..|+|+|||++.++++++|+.||+.| ++++.++.-|+||+++++..     .+..+|..|...| +||++-
T Consensus       258 ~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKA  336 (452)
T KOG0514|consen  258 EYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKA  336 (452)
T ss_pred             HHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhh
Confidence            3445667888999999999999999999999998 77999999999999998853     4577888887664 677764


Q ss_pred             -CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          306 -NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       306 -~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                       ..|+|+|++|+.+|+.++|+.||..|||+|++|.+|.|+|++|+++
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EH  383 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEH  383 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhh
Confidence             5799999999999999999999999999999999999999999987

>PHA02917 ankyrin-like protein; Provisional

Probab=99.70  E-value=4.3e-17  Score=169.25  Aligned_cols=180  Identities=16%  Similarity=0.123  Sum_probs=132.7

Q ss_pred             hhhhhHHHHHhcCCCCHHHHHh-cCcc----ccccccccccccccccCCCCcchhhhhcCCCC--CcccccccccccccC
Q 043342          166 TARAKWQAWQKLGAMPPEEAMQ-KYID----IVTELYPTWAAGSSLKSKRGQEDAASTDSKAP--MGPVFSSFAYEEESG  238 (363)
Q Consensus       166 ~~~ak~~aw~~~g~t~l~~A~~-~yv~----~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~--~~~ll~~~~~~~~~~  238 (363)
                      ...+..+..+..|.||++.|.. ++++    +++.|+..... ...+  +.....+.++..+.  +..++...+.+.+..
T Consensus        56 ~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~--~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~  132 (661)
T PHA02917         56 DSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIN--DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVK  132 (661)
T ss_pred             HCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCC--CcchHHHHHhhcCCHHHHHHHHHcCCCCCcc
Confidence            4456667778889999998754 4433    34555543221 1112  22233334444432  223444556777788


Q ss_pred             CCCchHHHHHHH--HcCCHHHHHHHHHcCCCCccCCC---CC-----------ChHHHHHHH-----------cCCHHHH
Q 043342          239 NDLKMDAIHAFA--REGDMDNLLKCIENGVSVNLRDS---EG-----------RAPLHWAVD-----------RGHLNIS  291 (363)
Q Consensus       239 ~~~g~t~Lh~Aa--~~g~~~~v~~LL~~g~~vn~~d~---~g-----------~TpLh~A~~-----------~g~~~iv  291 (363)
                      +..|+||||.++  ..|+.+++++|+++|+++|.+|.   .|           .||||+|+.           .++.+++
T Consensus       133 d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv  212 (661)
T PHA02917        133 CENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVV  212 (661)
T ss_pred             CCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHH
Confidence            889999999654  47899999999999999986653   34           599999986           4689999


Q ss_pred             HHHHhCCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHHHhCCCCCC----CCCCCCCcHHHHHh
Q 043342          292 ELLVSKNADVNAKDNEGQTPLHYAVVCDRE--AIAQFLVKQNADIG----MKDNDGNSPCHVCE  349 (363)
Q Consensus       292 ~~Ll~~gadin~~d~~G~TpLh~A~~~g~~--~iv~~Ll~~Gad~~----~~d~~G~TpL~~A~  349 (363)
                      ++|++.|+++|.+|..|+||||+|+..|+.  ++|++|++ |++++    ..|..|.||+++|+
T Consensus       213 ~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        213 KCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             HHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHH
Confidence            999999999999999999999999999985  79999985 88775    46677888888887

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.70  E-value=6.4e-18  Score=179.03  Aligned_cols=174  Identities=19%  Similarity=0.234  Sum_probs=132.0

Q ss_pred             HHHhcCCCCHH-HHHhc-CccccccccccccccccccCCCCcchhhhhcCC--CCCcccccccccc-------------c
Q 043342          173 AWQKLGAMPPE-EAMQK-YIDIVTELYPTWAAGSSLKSKRGQEDAASTDSK--APMGPVFSSFAYE-------------E  235 (363)
Q Consensus       173 aw~~~g~t~l~-~A~~~-yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~--~~~~~ll~~~~~~-------------~  235 (363)
                      .-+..|.++++ .|..+ +.++++.|+..+.     .+..|.+++|.+...  +.+..++......             .
T Consensus        47 ~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~  121 (743)
T TIGR00870        47 CPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQY  121 (743)
T ss_pred             CcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccc
Confidence            34456889999 67665 4566666665433     566788999877652  2222222221111             1


Q ss_pred             ccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCC--------------CCCChHHHHHHHcCCHHHHHHHHhCCCCC
Q 043342          236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRD--------------SEGRAPLHWAVDRGHLNISELLVSKNADV  301 (363)
Q Consensus       236 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d--------------~~g~TpLh~A~~~g~~~iv~~Ll~~gadi  301 (363)
                      ......|.||||+||..|+.++++.|+++|++++.++              ..|.||||+|+..|+.+++++|+++|+++
T Consensus       122 ~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi  201 (743)
T TIGR00870       122 TSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI  201 (743)
T ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch
Confidence            1123568999999999999999999999999998653              25899999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcC---------CHHHHHHHHhCCCCC-------CCCCCCCCcHHHHHhcC
Q 043342          302 NAKDNEGQTPLHYAVVCD---------REAIAQFLVKQNADI-------GMKDNDGNSPCHVCESD  351 (363)
Q Consensus       302 n~~d~~G~TpLh~A~~~g---------~~~iv~~Ll~~Gad~-------~~~d~~G~TpL~~A~~~  351 (363)
                      |.+|..|+||||+|+..+         ...+.++++..++..       ++.|.+|.||||+|+.+
T Consensus       202 n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~  267 (743)
T TIGR00870       202 LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKE  267 (743)
T ss_pred             hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhc
Confidence            999999999999999986         234666776665543       77899999999999865

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.67  E-value=2.3e-16  Score=119.51  Aligned_cols=105  Identities=31%  Similarity=0.493  Sum_probs=97.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 043342          244 DAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAI  323 (363)
Q Consensus       244 t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~i  323 (363)
                      ..+.+++++|.++.|+..+..|.++|..- .|++|||+|+..|.+.++++|+..|++++.+|+.|-|||-.|+..||.+|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            45778999999999999999998887654 79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHh
Q 043342          324 AQFLVKQNADIGMKDNDGNSPCHVCE  349 (363)
Q Consensus       324 v~~Ll~~Gad~~~~d~~G~TpL~~A~  349 (363)
                      |++|++.||+..++..+|.+.+..+.
T Consensus        83 VklLL~~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHcCcccceeCCCchhHHhhcc
Confidence            99999999999999999999887654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.67  E-value=1.5e-15  Score=122.81  Aligned_cols=113  Identities=38%  Similarity=0.682  Sum_probs=107.8

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 043342          239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC  318 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~  318 (363)
                      +..|.||||+|+..++.+++++|++.+.+.+..+..|.||||+|+..+..+++++|+..|++++..+..|.||+|+|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            46689999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          319 DREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       319 g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ++.+++++|+++|.+++..+..|.||+++|...
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~  116 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN  116 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence            999999999999999999999999999999765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02730 ankyrin-like protein; Provisional

Probab=99.65  E-value=6e-16  Score=158.17  Aligned_cols=177  Identities=14%  Similarity=0.140  Sum_probs=137.0

Q ss_pred             hHH-HHHhcCCCCHHHHHhc----CccccccccccccccccccCCCCcchhhhhcCCC-----CCcccccccc-cccccC
Q 043342          170 KWQ-AWQKLGAMPPEEAMQK----YIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKA-----PMGPVFSSFA-YEEESG  238 (363)
Q Consensus       170 k~~-aw~~~g~t~l~~A~~~----yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~-----~~~~ll~~~~-~~~~~~  238 (363)
                      ..+ ..+..|.|++|.|...    +.++++.|+..+++.. .++..|.||++.++..+     .+..+++... ...+..
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin-~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~  110 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERL-CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELT  110 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCc-ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccc
Confidence            445 5567799999998665    3899999999887665 47788999999766544     2333443332 222445


Q ss_pred             CCCchHHHHHHHH--cCCHHHHHHHHH-cCCCCccCC-----CCCChHHHHHHHcCCHHHHHHHHhCCCCCC-------C
Q 043342          239 NDLKMDAIHAFAR--EGDMDNLLKCIE-NGVSVNLRD-----SEGRAPLHWAVDRGHLNISELLVSKNADVN-------A  303 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~--~g~~~~v~~LL~-~g~~vn~~d-----~~g~TpLh~A~~~g~~~iv~~Ll~~gadin-------~  303 (363)
                      +..+.+|||.++.  .++.+++++|+. .+++++...     ..|.+|++++...++.++|++|+++|++++       .
T Consensus       111 ~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~  190 (672)
T PHA02730        111 SNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCM  190 (672)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccccc
Confidence            5557889999988  889999999997 667877653     278999999999999999999999999995       2


Q ss_pred             CCCCCC-cHHHHHH------HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          304 KDNEGQ-TPLHYAV------VCDREAIAQFLVKQNADIGMKDNDGNSPCHV  347 (363)
Q Consensus       304 ~d~~G~-TpLh~A~------~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~  347 (363)
                      .+..+. |.||++.      ..++.+++++|+++||++|.+|.+|.||||+
T Consensus       191 ~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~  241 (672)
T PHA02730        191 YDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQY  241 (672)
T ss_pred             ccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            344444 5566554      3467899999999999999999999999995

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.63  E-value=8.9e-16  Score=162.76  Aligned_cols=165  Identities=20%  Similarity=0.199  Sum_probs=119.7

Q ss_pred             HHHhcCcccccccccccc-ccccccCCCCcchhh-hhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHHHH---
Q 043342          184 EAMQKYIDIVTELYPTWA-AGSSLKSKRGQEDAA-STDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNL---  258 (363)
Q Consensus       184 ~A~~~yv~~v~~Ll~~~~-~~~~~~~~~g~~~~~-~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v---  258 (363)
                      .+..+.++.++.++.... ...+..+..|.++++ .+...+.. .+...+..... .+..|.|+||.|+.. ..+.+   
T Consensus        24 A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~-eiv~lLl~~g~-~~~~G~T~Lh~A~~~-~~~~v~~l  100 (743)
T TIGR00870        24 AAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENL-ELTELLLNLSC-RGAVGDTLLHAISLE-YVDAVEAI  100 (743)
T ss_pred             HHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChH-HHHHHHHhCCC-CCCcChHHHHHHHhc-cHHHHHHH
Confidence            456678888888887521 112234567889999 55555432 22222211111 567899999999873 33333   


Q ss_pred             -HHHHHcCCC------Ccc----CCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC--------------CCCCcHHH
Q 043342          259 -LKCIENGVS------VNL----RDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD--------------NEGQTPLH  313 (363)
Q Consensus       259 -~~LL~~g~~------vn~----~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d--------------~~G~TpLh  313 (363)
                       ..++..+.+      ++.    ....|.||||+|+.+|+.+++++|+++|+++|.++              ..|+||||
T Consensus       101 l~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~  180 (743)
T TIGR00870       101 LLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLN  180 (743)
T ss_pred             HHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHH
Confidence             333333321      111    23469999999999999999999999999999764              35899999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       314 ~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|+..|+.+++++|+++|+|++.+|..|+||||+|+.+
T Consensus       181 ~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       181 AAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVME  218 (743)
T ss_pred             HHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhh
Confidence            99999999999999999999999999999999999876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.62  E-value=3.7e-15  Score=140.27  Aligned_cols=144  Identities=20%  Similarity=0.196  Sum_probs=113.0

Q ss_pred             HHHHhcCCCCHHH-HHh-cCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHH
Q 043342          172 QAWQKLGAMPPEE-AMQ-KYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAF  249 (363)
Q Consensus       172 ~aw~~~g~t~l~~-A~~-~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A  249 (363)
                      .+.++.+.+++.. |.. ++.++++.|+..+++.....                            ...+..|.||||+|
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~----------------------------~~sd~~g~TpLh~A   77 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPF----------------------------PLSENSKTNPLIYA   77 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccC----------------------------cccCCCCCCHHHHH
Confidence            3445556666554 444 57899999988665332100                            01245689999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCccCC-CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 043342          250 AREGDMDNLLKCIENGVSVNLRD-SEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV  328 (363)
Q Consensus       250 a~~g~~~~v~~LL~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  328 (363)
                      +..|+.+++++|+++|+++|.++ ..|.||||+|+..++.+++++|+..|++++.+|..|.||||+|+..++..++.++.
T Consensus        78 a~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884         78 IDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             HHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            99999999999999999999864 57999999999999999999999999999999999999999999988888876665


Q ss_pred             hCCCCCCCCCCCCCcHHHHH
Q 043342          329 KQNADIGMKDNDGNSPCHVC  348 (363)
Q Consensus       329 ~~Gad~~~~d~~G~TpL~~A  348 (363)
                        |..   .+..+.+|++++
T Consensus       158 --~~~---~~~~~~~~~~~~  172 (300)
T PHA02884        158 --DNE---ISNFYKHPKKIL  172 (300)
T ss_pred             --CCc---ccccccChhhhh
Confidence              322   355667777754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.61  E-value=5.3e-16  Score=150.51  Aligned_cols=184  Identities=22%  Similarity=0.293  Sum_probs=141.7

Q ss_pred             hhhhHHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCccc--ccccccccccCCCCch
Q 043342          167 ARAKWQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPV--FSSFAYEEESGNDLKM  243 (363)
Q Consensus       167 ~~ak~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~l--l~~~~~~~~~~~~~g~  243 (363)
                      +.+..+..+..|.|++|.+ ...+.++|++|+..++..+. .+..+++|+|.++..+.+..+  +..++......|..|.
T Consensus        62 ~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~-~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~  140 (527)
T KOG0505|consen   62 RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNA-QDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGN  140 (527)
T ss_pred             cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccc-cccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCC
Confidence            3456688889999999986 55788999999987775544 778899999999988865432  2222222222222222


Q ss_pred             HH------------HHHHHH-cC-C------------HHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhC
Q 043342          244 DA------------IHAFAR-EG-D------------MDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK  297 (363)
Q Consensus       244 t~------------Lh~Aa~-~g-~------------~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  297 (363)
                      .|            +-.++. .| +            +.-++..+..|...+..+..|.|.||.|+.+|..++.++|++.
T Consensus       141 ~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a  220 (527)
T KOG0505|consen  141 MPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQA  220 (527)
T ss_pred             CccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHh
Confidence            22            222211 11 1            2234445557878888888899999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       298 gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |.+++.+|.+||||||.|+..|+.+++++|+++|++++.++..|.||+++|...
T Consensus       221 g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  221 GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             ccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            999999999999999999999999999999999999999999999999999875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.59  E-value=2.8e-15  Score=151.97  Aligned_cols=157  Identities=14%  Similarity=0.141  Sum_probs=123.4

Q ss_pred             ccccccccccccccCCCCcchhhhhcCCCC--Cc-ccccccccccccCCCCchHHHHHHHH-cCCHHHHHHHHHcCCCCc
Q 043342          194 TELYPTWAAGSSLKSKRGQEDAASTDSKAP--MG-PVFSSFAYEEESGNDLKMDAIHAFAR-EGDMDNLLKCIENGVSVN  269 (363)
Q Consensus       194 ~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~--~~-~ll~~~~~~~~~~~~~g~t~Lh~Aa~-~g~~~~v~~LL~~g~~vn  269 (363)
                      +.|+..++.+..  ..++.|+++.-.....  +. .++..+....+..+-.|.+++|+-+. .|+++++++|+.+|+++|
T Consensus        22 ~~l~~~g~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN   99 (631)
T PHA02792         22 QSLIESGANPLY--EYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEIN   99 (631)
T ss_pred             HHHHHcCCCccc--ccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcc
Confidence            445566665554  2445577775433322  11 23334444555677778889987765 789999999999999999


Q ss_pred             cCCCCCChHHHHHHH-cCCHHHHHHHHhCCCCCC------------------------------------CCCCCCCcHH
Q 043342          270 LRDSEGRAPLHWAVD-RGHLNISELLVSKNADVN------------------------------------AKDNEGQTPL  312 (363)
Q Consensus       270 ~~d~~g~TpLh~A~~-~g~~~iv~~Ll~~gadin------------------------------------~~d~~G~TpL  312 (363)
                      .++..+.||+|+|+. .++.+++++|+++|++++                                    ..|..|.|||
T Consensus       100 ~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L  179 (631)
T PHA02792        100 SIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVL  179 (631)
T ss_pred             cccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchH
Confidence            999999999999965 699999999999998632                                    4466799999


Q ss_pred             HHHHHcC-------CHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcCc
Q 043342          313 HYAVVCD-------REAIAQFLVKQNADIGMKDNDGNSPCHVCESDW  352 (363)
Q Consensus       313 h~A~~~g-------~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~~  352 (363)
                      |+|+..+       +.+++++|+.+|++++.+|..|.||||+|+.+-
T Consensus       180 ~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        180 YYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             HHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcc
Confidence            9999999       899999999999999999999999999998664

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.59  E-value=2.4e-15  Score=145.94  Aligned_cols=114  Identities=32%  Similarity=0.473  Sum_probs=101.2

Q ss_pred             ccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCC------------
Q 043342          236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA------------  303 (363)
Q Consensus       236 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~------------  303 (363)
                      +..+.+|.|+||.+|...+.++|++|+++|++||..|..|+||||.|+..||+.++++|++.|+++..            
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~  146 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLA  146 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccc
Confidence            55677889999999999999999999999999999999999999999999999999999988774222            


Q ss_pred             -----------------------------------------------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 043342          304 -----------------------------------------------KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM  336 (363)
Q Consensus       304 -----------------------------------------------~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~  336 (363)
                                                                     .+..|.|.||.|+..|..++.++|+++|.++++
T Consensus       147 e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~  226 (527)
T KOG0505|consen  147 EDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNI  226 (527)
T ss_pred             cCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccc
Confidence                                                           234578999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHh
Q 043342          337 KDNDGNSPCHVCE  349 (363)
Q Consensus       337 ~d~~G~TpL~~A~  349 (363)
                      +|.+|+||||.|+
T Consensus       227 ~D~dgWtPlHAAA  239 (527)
T KOG0505|consen  227 KDYDGWTPLHAAA  239 (527)
T ss_pred             ccccCCCcccHHH
Confidence            9999999999876

>PHA02792 ankyrin-like protein; Provisional

Probab=99.59  E-value=7e-15  Score=149.06  Aligned_cols=109  Identities=19%  Similarity=0.253  Sum_probs=100.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCC--ChHHHHHHHcCCH---HHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 043342          242 KMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEG--RAPLHWAVDRGHL---NISELLVSKNADVNAKDNEGQTPLHYAV  316 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g--~TpLh~A~~~g~~---~iv~~Ll~~gadin~~d~~G~TpLh~A~  316 (363)
                      ....+|.|+..|+.+++++|+++|++++.+|..|  .||||+|+.....   .++++|+.+|+++|.+|..|+||||+|+
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa  418 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCI  418 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHH
Confidence            5678999999999999999999999999998774  6999998776654   4688999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhc
Q 043342          317 VCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       317 ~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      ..++.+++++|+++|++++.+|..|.||||+|..
T Consensus       419 ~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        419 ESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999999999999999864

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.58  E-value=7.3e-16  Score=139.21  Aligned_cols=105  Identities=33%  Similarity=0.582  Sum_probs=95.4

Q ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 043342          246 IHAFAREGDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIA  324 (363)
Q Consensus       246 Lh~Aa~~g~~~~v~~LL~~-g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv  324 (363)
                      ++-.|+.|+.-.|+..|+. .-+.|.-|..|.+||||||..|+..+++.|+.+|+.+|..+....||||+|+.+||.+||
T Consensus         4 if~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdiv   83 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIV   83 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHH
Confidence            4556788886666665554 467899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCcHHHHHhc
Q 043342          325 QFLVKQNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       325 ~~Ll~~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      +.|+++.+|+|..|..|+|||||||-
T Consensus        84 qkll~~kadvnavnehgntplhyacf  109 (448)
T KOG0195|consen   84 QKLLSRKADVNAVNEHGNTPLHYACF  109 (448)
T ss_pred             HHHHHHhcccchhhccCCCchhhhhh
Confidence            99999999999999999999999984

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.56  E-value=6e-15  Score=147.92  Aligned_cols=119  Identities=23%  Similarity=0.303  Sum_probs=112.5

Q ss_pred             ccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 043342          232 AYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP  311 (363)
Q Consensus       232 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~Tp  311 (363)
                      ....+..+..|.|.||.||.+|+..++++|+++.+-++..|..|.+|||+|++.|+.+++++|+..+..+|..+..|.||
T Consensus        39 sds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tp  118 (854)
T KOG0507|consen   39 SDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETP  118 (854)
T ss_pred             CccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCc
Confidence            33446677799999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhc
Q 043342          312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       312 Lh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      ||.|++.|+.+++.+|+++|+++-++|..+.|+|++|++
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~q  157 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASR  157 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHH
Confidence            999999999999999999999999999999999999985

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=5.1e-14  Score=125.36  Aligned_cols=114  Identities=26%  Similarity=0.438  Sum_probs=107.1

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCC-----HHHHHHHHhCCC---CCCCCCCCCC
Q 043342          238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGH-----LNISELLVSKNA---DVNAKDNEGQ  309 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~-----~~iv~~Ll~~ga---din~~d~~G~  309 (363)
                      .+..+.+++|.++..++..++++++..|++++.++..|.||||+|+..++     .++++.|+..|+   ..+.+|..|+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            44556899999999999999999999999999999999999999999999     999999999999   5666799999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       310 TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ||||+|+..|+.+++++|++.|++++.++..|.|+++.|+..
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~  190 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN  190 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhccc
Confidence            999999999999999999999999999999999999999876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=3.9e-14  Score=147.86  Aligned_cols=106  Identities=27%  Similarity=0.399  Sum_probs=100.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 043342          244 DAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAI  323 (363)
Q Consensus       244 t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~i  323 (363)
                      ..|+.|+..|+.+.++.|++.|+++|.+|..|.||||+||..|+.+++++|+++|+++|.+|..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-------CCCCCCCCCCCCcHHHHHh
Q 043342          324 AQFLVKQ-------NADIGMKDNDGNSPCHVCE  349 (363)
Q Consensus       324 v~~Ll~~-------Gad~~~~d~~G~TpL~~A~  349 (363)
                      +++|+++       |++++..+..|.+|+....
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999998       9999999998887766543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.54  E-value=2.2e-15  Score=131.34  Aligned_cols=177  Identities=21%  Similarity=0.226  Sum_probs=132.8

Q ss_pred             hhhhhHHHHHhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccccccCCCCc
Q 043342          166 TARAKWQAWQKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLK  242 (363)
Q Consensus       166 ~~~ak~~aw~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g  242 (363)
                      ..+++-|.-.-.+.+++.-+. +.|.+.+..+..   ...+..++.|.|++.-++.+|.+..  ++...+.+........
T Consensus       117 tN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~r  193 (296)
T KOG0502|consen  117 TNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYR  193 (296)
T ss_pred             cccccCCccccccCChhhHHHHHHHHHHHHHHhh---ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhh
Confidence            334444444444455555432 234444433333   2233345666666666666664432  2333334444445556


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREA  322 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~  322 (363)
                      .++|..|++.|-.++|++||.++.++|..|.+|-|||.+|++.+|.+|++.|+..|++++..+..|++++..|+..|+. 
T Consensus       194 esALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-  272 (296)
T KOG0502|consen  194 ESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-  272 (296)
T ss_pred             hhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHH
Q 043342          323 IAQFLVKQNADIGMKDNDGNSPCH  346 (363)
Q Consensus       323 iv~~Ll~~Gad~~~~d~~G~TpL~  346 (363)
                      +|+..|++-+..+.+|..-.||+|
T Consensus       273 ~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  273 IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHHHHHHHHHhhcccCCCCCC
Confidence            899999988888999988888876

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.51  E-value=1.4e-14  Score=102.39  Aligned_cols=55  Identities=40%  Similarity=0.688  Sum_probs=27.0

Q ss_pred             HHhCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 043342          294 LVSKN-ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC  348 (363)
Q Consensus       294 Ll~~g-adin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A  348 (363)
                      ||++| +++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 77777777777888887777777777777777777777777778887775

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=4.9e-14  Score=136.15  Aligned_cols=107  Identities=30%  Similarity=0.453  Sum_probs=98.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 043342          244 DAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAI  323 (363)
Q Consensus       244 t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~i  323 (363)
                      ..|..|+..|.+++|+..+..--|+...+..|.|+||-|+..||.+||+|||..|+++|+.|.+||||||+|+.|++..+
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            34677889999999999999888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCC-CCCCcHHHHHhc
Q 043342          324 AQFLVKQNADIGMKD-NDGNSPCHVCES  350 (363)
Q Consensus       324 v~~Ll~~Gad~~~~d-~~G~TpL~~A~~  350 (363)
                      |+.|+++|+.+-+.. .++.|+.+-|..
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee  659 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEE  659 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcch
Confidence            999999999887665 488999888754

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.49  E-value=4.4e-14  Score=143.21  Aligned_cols=114  Identities=25%  Similarity=0.327  Sum_probs=104.8

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccC---------C--------------CCCChHHHHHHHcCCHHHHHHH
Q 043342          238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLR---------D--------------SEGRAPLHWAVDRGHLNISELL  294 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~---------d--------------~~g~TpLh~A~~~g~~~iv~~L  294 (363)
                      ....|.|+||.|+.+.+.+.|+.|++.|+||+.+         |              ..|..||.+|+..++.+++++|
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            3467899999999999999999999999999752         1              1267899999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCcHHHHHhcC
Q 043342          295 VSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD--IGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       295 l~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad--~~~~d~~G~TpL~~A~~~  351 (363)
                      +++|+|+|++|..|+|.||..+.+-..++..+++++|++  ..++|+.|.|||-+|+.-
T Consensus       260 l~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAakl  318 (782)
T KOG3676|consen  260 LAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKL  318 (782)
T ss_pred             HhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHh
Confidence            999999999999999999999999889999999999999  999999999999999865

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.49  E-value=2.1e-13  Score=105.30  Aligned_cols=69  Identities=38%  Similarity=0.628  Sum_probs=65.7

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          279 LHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       279 Lh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ||+||..|+.+++++|++.+.+++.    |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHc
Confidence            7999999999999999999998877    89999999999999999999999999999999999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.46  E-value=8.2e-14  Score=139.86  Aligned_cols=181  Identities=18%  Similarity=0.222  Sum_probs=147.2

Q ss_pred             hhHHHHHhcCCCCHHH-HHhcCccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccccccCCCCchHH
Q 043342          169 AKWQAWQKLGAMPPEE-AMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLKMDA  245 (363)
Q Consensus       169 ak~~aw~~~g~t~l~~-A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g~t~  245 (363)
                      +-++--+..|.+|++. |..+..++++.++.+. +.....+..+.+++|.++..+....  ++.....+.-.++..+.|+
T Consensus        73 a~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~  151 (854)
T KOG0507|consen   73 ALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETV  151 (854)
T ss_pred             hhhhhhhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccH
Confidence            3334444556677775 6778889998888876 4555567788899999998886554  4455566667788889999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCC--------ccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 043342          246 IHAFAREGDMDNLLKCIENGVSV--------NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVV  317 (363)
Q Consensus       246 Lh~Aa~~g~~~~v~~LL~~g~~v--------n~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~  317 (363)
                      |-.|++.|..++++.|+.....+        ..++-.+.+|||.|+.+||.++++.|++.|.++|.....| |+||-|+.
T Consensus       152 ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaal  230 (854)
T KOG0507|consen  152 LDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAAL  230 (854)
T ss_pred             HHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhh
Confidence            99999999999999998864322        1234457899999999999999999999999999988777 99999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          318 CDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       318 ~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ||..++|.+|++.|++..++|.+|+|.|++...-
T Consensus       231 cgk~evvr~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  231 CGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             cCcchhhhHHHhhccccccccccchHHHHHHHhc
Confidence            9999999999999999999999999999987644

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=7.4e-14  Score=98.65  Aligned_cols=55  Identities=53%  Similarity=0.910  Sum_probs=33.4

Q ss_pred             HHHcC-CCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 043342          261 CIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA  315 (363)
Q Consensus       261 LL~~g-~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A  315 (363)
                      ||++| .++|.+|..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 88999999999999999999999999999999999999999999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=2.2e-13  Score=95.48  Aligned_cols=54  Identities=50%  Similarity=0.929  Sum_probs=42.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 043342          275 GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV  328 (363)
Q Consensus       275 g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  328 (363)
                      |+||||+||..|+.+++++|++.|+++|.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678889999888888999888888888888888999999999888888888886

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.39  E-value=1.8e-12  Score=117.40  Aligned_cols=107  Identities=24%  Similarity=0.371  Sum_probs=97.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCH
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK-DNEGQTPLHYAVVCDRE  321 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~-d~~G~TpLh~A~~~g~~  321 (363)
                      ..+|..++..|+.+....||..--++|.+|..|+|+|..|+.+|+.++++.||+.|+|+|.. +..+.||||+|+.+|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            57899999999999999999876668999999999999999999999999999999999864 56789999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHh
Q 043342          322 AIAQFLVKQNADIGMKDNDGNSPCHVCE  349 (363)
Q Consensus       322 ~iv~~Ll~~Gad~~~~d~~G~TpL~~A~  349 (363)
                      +++++|++.|+.+...|.-|+|+-.+|+
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAA  120 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAA  120 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHH
Confidence            9999999999999999999999998875

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.35  E-value=7.6e-12  Score=100.92  Aligned_cols=93  Identities=33%  Similarity=0.606  Sum_probs=87.0

Q ss_pred             ccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 043342          236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA  315 (363)
Q Consensus       236 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A  315 (363)
                      ...+..|.++||.|+..++.+++++|+..+++++..+..|.||+|+|+..++.+++++|+.++.+++..+..|.||||+|
T Consensus        34 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~  113 (126)
T cd00204          34 NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLA  113 (126)
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            34566788999999999999999999999998998999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHH
Q 043342          316 VVCDREAIAQFLV  328 (363)
Q Consensus       316 ~~~g~~~iv~~Ll  328 (363)
                      ...++.+++++|+
T Consensus       114 ~~~~~~~~~~~Ll  126 (126)
T cd00204         114 AKNGHLEVVKLLL  126 (126)
T ss_pred             HhcCCHHHHHHhC
Confidence            9999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.33  E-value=2.4e-12  Score=90.08  Aligned_cols=54  Identities=31%  Similarity=0.658  Sum_probs=46.4

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHH
Q 043342          242 KMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLV  295 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll  295 (363)
                      |+|+||+||+.|+.+++++|+++|.++|.+|..|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            579999999999999999999999999999999999999999999999999986

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.31  E-value=8.2e-12  Score=111.06  Aligned_cols=101  Identities=29%  Similarity=0.441  Sum_probs=93.3

Q ss_pred             cccccccCCCCchHHHHHHHHcCC-----HHHHHHHHHcCC---CCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCC
Q 043342          231 FAYEEESGNDLKMDAIHAFAREGD-----MDNLLKCIENGV---SVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN  302 (363)
Q Consensus       231 ~~~~~~~~~~~g~t~Lh~Aa~~g~-----~~~v~~LL~~g~---~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin  302 (363)
                      ...+....+..|.|+||+|+..++     .++++.|++.|+   ..+.++..|.||||+|+..|+.++++.|+..|++++
T Consensus        95 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~  174 (235)
T COG0666          95 SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN  174 (235)
T ss_pred             cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCc
Confidence            334447788899999999999999     999999999999   566679999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 043342          303 AKDNEGQTPLHYAVVCDREAIAQFLVKQN  331 (363)
Q Consensus       303 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G  331 (363)
                      .++..|.|++|+|+..++..+++.|+..+
T Consensus       175 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         175 SRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999965

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.27  E-value=1.3e-11  Score=125.53  Aligned_cols=116  Identities=23%  Similarity=0.318  Sum_probs=96.7

Q ss_pred             ccCCCCchHHHHHHHHc---CCHHHHHHHHHcCCC-Ccc---CC-CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCC---
Q 043342          236 ESGNDLKMDAIHAFARE---GDMDNLLKCIENGVS-VNL---RD-SEGRAPLHWAVDRGHLNISELLVSKNADVNAK---  304 (363)
Q Consensus       236 ~~~~~~g~t~Lh~Aa~~---g~~~~v~~LL~~g~~-vn~---~d-~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~---  304 (363)
                      +.+...|.|.||.|..+   ++.++++.|++.-.. +|.   -+ ..|.||||+|+.+.+.++|+.|+..|||||++   
T Consensus       137 ~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G  216 (782)
T KOG3676|consen  137 NERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACG  216 (782)
T ss_pred             ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhc
Confidence            44567799999999974   445888888875322 222   22 35999999999999999999999999999885   


Q ss_pred             ------C--------------CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          305 ------D--------------NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       305 ------d--------------~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                            |              ..|..||.+|+..++.+|+++|+++|||++.+|..|+|.||+++-.
T Consensus       217 ~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~  283 (782)
T KOG3676|consen  217 AFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIH  283 (782)
T ss_pred             cccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHH
Confidence                  1              1367899999999999999999999999999999999999998755

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.21  E-value=2.4e-11  Score=92.43  Aligned_cols=74  Identities=26%  Similarity=0.284  Sum_probs=69.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY  314 (363)
Q Consensus       241 ~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~  314 (363)
                      .|++|||+|+-.|.++++.+|+..|++++.+|+.|-|||.-|+..||.++|++|+++|++-..+..+|.+.+..
T Consensus        33 ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhh
Confidence            57899999999999999999999999999999999999999999999999999999999988888888776654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.17  E-value=8e-11  Score=106.75  Aligned_cols=96  Identities=18%  Similarity=0.232  Sum_probs=88.8

Q ss_pred             cccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCcc-CCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 043342          233 YEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNL-RDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP  311 (363)
Q Consensus       233 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~Tp  311 (363)
                      ...+..|..|+++|..|+..|+++.+++||+.|+|+|. .+..++||||+|+..|+.+++++|++.|+.....+.-|+|+
T Consensus        36 r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTA  115 (396)
T KOG1710|consen   36 RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTA  115 (396)
T ss_pred             hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhH
Confidence            34577899999999999999999999999999999987 45679999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHH
Q 043342          312 LHYAVVCDREAIAQFLV  328 (363)
Q Consensus       312 Lh~A~~~g~~~iv~~Ll  328 (363)
                      -..|+..|+.++|.++-
T Consensus       116 aqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen  116 AQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HHHHHHhcchHHHHHHh
Confidence            99999999999988764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.14  E-value=1.1e-11  Score=128.32  Aligned_cols=189  Identities=19%  Similarity=0.204  Sum_probs=157.5

Q ss_pred             hhhhhhhhHHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCC
Q 043342          163 LKMTARAKWQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGN  239 (363)
Q Consensus       163 ~~~~~~ak~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~  239 (363)
                      +.+...+.++..++.|.+|+-.| -.+++.+|..|+....+...-+++++.+++.+++..+.-.  .++...+...+.++
T Consensus       775 llv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrn  854 (2131)
T KOG4369|consen  775 LLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRN  854 (2131)
T ss_pred             HHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccc
Confidence            33444578888889999998765 4577888888888777666667788888888887777433  34444555666778


Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCC--CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHH
Q 043342          240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDS--EGRAPLHWAVDRGHLNISELLVSKNADVNAKD-NEGQTPLHYAV  316 (363)
Q Consensus       240 ~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~--~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d-~~G~TpLh~A~  316 (363)
                      -...|||..|...|..++|+.||..|..||.+..  .|-.||++|...||...++.|++.|.+||..- .+-+|+|-+|+
T Consensus       855 vsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~  934 (2131)
T KOG4369|consen  855 VSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLAL  934 (2131)
T ss_pred             hhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecc
Confidence            8889999999999999999999999999988754  58999999999999999999999999999754 46789999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          317 VCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       317 ~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ..|+.+++.+||.+.+++..+-+.|.|||.-+++.
T Consensus       935 fqgr~evv~lLLa~~anvehRaktgltplme~Asg  969 (2131)
T KOG4369|consen  935 FQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASG  969 (2131)
T ss_pred             ccCcchHHHHHHHHhhhhhhhcccCCcccchhhcC
Confidence            99999999999999999999999999999876654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.13  E-value=1.4e-10  Score=121.26  Aligned_cols=75  Identities=28%  Similarity=0.449  Sum_probs=72.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          277 APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       277 TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +.||.|+..|+.+++++|+..|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            358899999999999999999999999999999999999999999999999999999999999999999999876

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.13  E-value=8.5e-11  Score=114.00  Aligned_cols=97  Identities=26%  Similarity=0.301  Sum_probs=84.4

Q ss_pred             cccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcH
Q 043342          233 YEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD-NEGQTP  311 (363)
Q Consensus       233 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d-~~G~Tp  311 (363)
                      .+....|+.|.|+||-|+..||.++|++||+.|+++|..|.+|+||||+|+..++..+|+.|++.|+-|-+.. .++.|+
T Consensus       574 ~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa  653 (752)
T KOG0515|consen  574 TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETA  653 (752)
T ss_pred             cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccch
Confidence            3445678889999999999999999999999999999999999999999999999999999999999876544 467888


Q ss_pred             HHHHH--HcCCHHHHHHHHh
Q 043342          312 LHYAV--VCDREAIAQFLVK  329 (363)
Q Consensus       312 Lh~A~--~~g~~~iv~~Ll~  329 (363)
                      ...+-  ..|..+|.+||..
T Consensus       654 ~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  654 AEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hhhcchhhhhHHHHHHHHHH
Confidence            77654  3477889998863

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.01  E-value=1.8e-10  Score=116.76  Aligned_cols=95  Identities=27%  Similarity=0.380  Sum_probs=83.9

Q ss_pred             HHHHHHHc-CCC-CccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 043342          257 NLLKCIEN-GVS-VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDN-EGQTPLHYAVVCDREAIAQFLVKQNAD  333 (363)
Q Consensus       257 ~v~~LL~~-g~~-vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~Gad  333 (363)
                      .++-++.+ +.+ .|++|..|+|+||+++..+...++++||++|++++.+|. .|+||||-|+..|+++++-+||++|+.
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            34444443 323 688999999999999999999999999999999999997 599999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHhcC
Q 043342          334 IGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       334 ~~~~d~~G~TpL~~A~~~  351 (363)
                      +.++|++|..||+..++.
T Consensus       112 L~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             eEEecccCCCHHHHHhhc
Confidence            999999999999988763

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.91  E-value=5e-09  Score=101.15  Aligned_cols=86  Identities=33%  Similarity=0.531  Sum_probs=80.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCccCCCC-CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 043342          244 DAIHAFAREGDMDNLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREA  322 (363)
Q Consensus       244 t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~-g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~  322 (363)
                      --||..++.|+++....||..|+++|..+.+ |.||||.|+..|+..-+++|+-+|+|+++.|.+|+||+.||-..||.+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            4699999999999999999999999998764 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 043342          323 IAQFLVK  329 (363)
Q Consensus       323 iv~~Ll~  329 (363)
                      +.+.|++
T Consensus       215 laeRl~e  221 (669)
T KOG0818|consen  215 LAERLVE  221 (669)
T ss_pred             HHHHHHH
Confidence            8887765

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.89  E-value=4.7e-10  Score=116.61  Aligned_cols=185  Identities=20%  Similarity=0.158  Sum_probs=107.2

Q ss_pred             hhhhHHHHHhcCCCCHHHH-HhcCcccccccccccccccc-ccCCCCcchhhhhcCCCCCcccccc---cccccccCCCC
Q 043342          167 ARAKWQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSS-LKSKRGQEDAASTDSKAPMGPVFSS---FAYEEESGNDL  241 (363)
Q Consensus       167 ~~ak~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~-~~~~~g~~~~~~a~~~~~~~~ll~~---~~~~~~~~~~~  241 (363)
                      ..+.-.+.+-..-||+..| ..+|+++|..|+..+...+. .-.+-|..|++.+...+.-...+..   ...........
T Consensus       846 ~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTN  925 (2131)
T KOG4369|consen  846 AGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETN  925 (2131)
T ss_pred             hhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccc
Confidence            3344445555667787765 44788888888886644332 2334556677766665533322222   11111112233


Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCC-------------------
Q 043342          242 KMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN-------------------  302 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin-------------------  302 (363)
                      .+|+|-.|+..|..+++.+||.+.+++..+-..|.|||+-++..|.+++-++||..|+|+|                   
T Consensus       926 rnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kG 1005 (2131)
T KOG4369|consen  926 RNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKG 1005 (2131)
T ss_pred             cccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCC
Confidence            3566666666666666666666666666666666666666666666666566665555544                   


Q ss_pred             ----------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          303 ----------------AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       303 ----------------~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                                      ++++.|.|+|.+|+.-|+...+.+|++++++++..|+.-.+++.-|.++
T Consensus      1006 h~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRK 1070 (2131)
T KOG4369|consen 1006 HTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRK 1070 (2131)
T ss_pred             chhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHh
Confidence                            4455666666666666666666666666666666666666666555554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.86  E-value=2.5e-09  Score=102.87  Aligned_cols=93  Identities=24%  Similarity=0.419  Sum_probs=86.6

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHH
Q 043342          239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK-NADVNAKDNEGQTPLHYAVV  317 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-gadin~~d~~G~TpLh~A~~  317 (363)
                      ...+...+.+|++.|++..++.+.-.|.+++.+|.+.+|+||.|+..|+.+++++|++. +.+++.+|.+|+|||.-|..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            34456789999999999999999999999999999999999999999999999999986 89999999999999999999


Q ss_pred             cCCHHHHHHHHhCC
Q 043342          318 CDREAIAQFLVKQN  331 (363)
Q Consensus       318 ~g~~~iv~~Ll~~G  331 (363)
                      .+|.+++++|-++-
T Consensus       583 F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQ  596 (622)
T ss_pred             cCcHHHHHHHHHHh
Confidence            99999999998753

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.74  E-value=1.5e-08  Score=63.18  Aligned_cols=32  Identities=44%  Similarity=0.760  Sum_probs=23.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 043342          307 EGQTPLHYAVVCDREAIAQFLVKQNADIGMKD  338 (363)
Q Consensus       307 ~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d  338 (363)
                      +|+||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36677777777777777777777777777665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.73  E-value=3e-08  Score=97.51  Aligned_cols=91  Identities=24%  Similarity=0.400  Sum_probs=80.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC--Ccc--CCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 043342          244 DAIHAFAREGDMDNLLKCIENGVS--VNL--RDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD  319 (363)
Q Consensus       244 t~Lh~Aa~~g~~~~v~~LL~~g~~--vn~--~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g  319 (363)
                      .-|..|+...++..+-.||.+|..  +|.  .+.+|+|+||+||..|+..+.++|+-+|+|+..+|..|+|+|.||-+.|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            456677778888899999999854  443  3456899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCC
Q 043342          320 REAIAQFLVKQNADI  334 (363)
Q Consensus       320 ~~~iv~~Ll~~Gad~  334 (363)
                      ..+|+.+|+++|+..
T Consensus       706 sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPD  720 (749)
T ss_pred             cHHHHHHHHHcCCCc
Confidence            999999999998754

>PF13606 Ank_3: Ankyrin repeat

Probab=98.73  E-value=1.6e-08  Score=61.66  Aligned_cols=29  Identities=34%  Similarity=0.639  Sum_probs=19.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 043342          307 EGQTPLHYAVVCDREAIAQFLVKQNADIG  335 (363)
Q Consensus       307 ~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~  335 (363)
                      +|+||||+|+..|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36667777777777777777777766665

>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=1.5e-08  Score=93.28  Aligned_cols=93  Identities=25%  Similarity=0.422  Sum_probs=84.8

Q ss_pred             ccccccchHHHHHHHHHHHHHHhhhhcCC-CCChhhHhHHhhhhhccccCCCCC---CCCchhhhhhhhhHHHHHhcCCC
Q 043342          105 WEGVESTELDEMFSAATAFVAASAAASSQ-KVSNDVQLQLYALYKIATEGPCSA---PQPSALKMTARAKWQAWQKLGAM  180 (363)
Q Consensus       105 ~e~~e~~~l~~~f~~A~~~v~~~~~~~~~-~~~~~~~L~lyalykqAt~G~~~~---~~p~~~~~~~~ak~~aw~~~g~t  180 (363)
                      .++.++..|++.|..|+.|++.  ++|+. +++++++|+|.+|.||+..|+.++   +.-++|++.|+..-.+|..+|.+
T Consensus        24 ~~~~wGf~LeElY~LA~~fyKe--~~GKa~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~~  101 (469)
T KOG3878|consen   24 SAEKWGFPLEELYRLAFTFYKE--NSGKAIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQHWQLLGEI  101 (469)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh--ccCCccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHHHHHHHhcc
Confidence            4778899999999999999995  67887 999999999999999999999984   55699999999999999999999


Q ss_pred             CHHHHHhcCcccccccccc
Q 043342          181 PPEEAMQKYIDIVTELYPT  199 (363)
Q Consensus       181 ~l~~A~~~yv~~v~~Ll~~  199 (363)
                      +.++||..++.++....+.
T Consensus       102 sre~AM~~FV~Lldr~C~~  120 (469)
T KOG3878|consen  102 SREQAMEGFVDLLDRMCSA  120 (469)
T ss_pred             cHHHHHHHHHHHHHhcchh
Confidence            9999999999998877653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.71  E-value=6e-09  Score=106.01  Aligned_cols=90  Identities=27%  Similarity=0.386  Sum_probs=82.5

Q ss_pred             cccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCC-CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q 043342          229 SSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNADVNAKDNE  307 (363)
Q Consensus       229 ~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~-g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~  307 (363)
                      +...+..+..|..|+|+||.++..+...++++||++|++++.+|.. |+||||-|+..|+++++-.||.+|+.+-.+|++
T Consensus        39 k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dke  118 (1267)
T KOG0783|consen   39 KSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKE  118 (1267)
T ss_pred             HhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEeccc
Confidence            3344456778899999999999999999999999999999999985 999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHc
Q 043342          308 GQTPLHYAVVC  318 (363)
Q Consensus       308 G~TpLh~A~~~  318 (363)
                      |..||.+-++.
T Consensus       119 glsplq~~~r~  129 (1267)
T KOG0783|consen  119 GLSPLQFLSRV  129 (1267)
T ss_pred             CCCHHHHHhhc
Confidence            99999988763

>PF13606 Ank_3: Ankyrin repeat

Probab=98.59  E-value=6.4e-08  Score=58.98  Aligned_cols=30  Identities=43%  Similarity=0.756  Sum_probs=24.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 043342          274 EGRAPLHWAVDRGHLNISELLVSKNADVNA  303 (363)
Q Consensus       274 ~g~TpLh~A~~~g~~~iv~~Ll~~gadin~  303 (363)
                      +|+||||+||..|+.+++++|+++|+++|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            478888888888888888888888888763

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.59  E-value=7.9e-08  Score=59.93  Aligned_cols=33  Identities=52%  Similarity=0.961  Sum_probs=28.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 043342          274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDN  306 (363)
Q Consensus       274 ~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~  306 (363)
                      +|+||||+|+.+|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478899999999999999999999998888763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.58  E-value=1.3e-07  Score=92.77  Aligned_cols=104  Identities=24%  Similarity=0.370  Sum_probs=89.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHHcCCHHH
Q 043342          246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD--VNAKDNEGQTPLHYAVVCDREAI  323 (363)
Q Consensus       246 Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad--in~~d~~G~TpLh~A~~~g~~~i  323 (363)
                      |..|+..+++-.++.....|.++..++.+-++.||+|+..|+-++|+++|++|..  +++.|..|.|+||.|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            5667777777777777777888888888889999999999999999999999875  57778899999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHh
Q 043342          324 AQFLVKQNADIGMKDNDGNSPCHVCE  349 (363)
Q Consensus       324 v~~Ll~~Gad~~~~d~~G~TpL~~A~  349 (363)
                      +++|++.|+.+...|..|.||-.-|.
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraq  975 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQ  975 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHH
Confidence            99999999999999999999987664

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.56  E-value=1.4e-07  Score=92.22  Aligned_cols=87  Identities=36%  Similarity=0.537  Sum_probs=75.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHc--CCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q 043342          244 DAIHAFAREGDMDNLLKCIEN--GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE  321 (363)
Q Consensus       244 t~Lh~Aa~~g~~~~v~~LL~~--g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~  321 (363)
                      -|+|+++...+.+.+...+..  ...++.+|..|+||||+|+..|+...++.|+..|+++..+++.|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            468999988887776664433  456888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 043342          322 AIAQFLVKQ  330 (363)
Q Consensus       322 ~iv~~Ll~~  330 (363)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888777653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.50  E-value=2.8e-07  Score=89.37  Aligned_cols=82  Identities=30%  Similarity=0.404  Sum_probs=72.7

Q ss_pred             cCCCCCCh------HHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Q 043342          270 LRDSEGRA------PLHWAVDRGHLNISELLVSKNADVNAKDN-EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGN  342 (363)
Q Consensus       270 ~~d~~g~T------pLh~A~~~g~~~iv~~Ll~~gadin~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~  342 (363)
                      .+|.+|.|      -||-.++.|+.+.+-.||..|+++|..+. .|.||||.|++.|+..-+++|+-+|||++..|.+|.
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~Gm  201 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGM  201 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCC
Confidence            45555544      58989999999999999999999998775 699999999999999999999999999999999999


Q ss_pred             cHHHHHhcC
Q 043342          343 SPCHVCESD  351 (363)
Q Consensus       343 TpL~~A~~~  351 (363)
                      ||+++|-..
T Consensus       202 tP~~~AR~~  210 (669)
T KOG0818|consen  202 TPVDYARQG  210 (669)
T ss_pred             cHHHHHHhc
Confidence            999998543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.40  E-value=5.8e-07  Score=88.38  Aligned_cols=94  Identities=22%  Similarity=0.344  Sum_probs=86.3

Q ss_pred             cCCCCchHHHHHHHHcCCHHHHHHHHHcCCC--CccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          237 SGNDLKMDAIHAFAREGDMDNLLKCIENGVS--VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY  314 (363)
Q Consensus       237 ~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~--vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~  314 (363)
                      ..+....+.||+|+..|+-++|+++|++|..  ++..|..|.|+||-|+..++..++++|++.|+.+-..|..|.||-.-
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~er  973 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQER  973 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHH
Confidence            3456678999999999999999999999965  67788899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhC
Q 043342          315 AVVCDREAIAQFLVKQ  330 (363)
Q Consensus       315 A~~~g~~~iv~~Ll~~  330 (363)
                      |-+.|..+++.||-..
T Consensus       974 aqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  974 AQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHhcCCchHHHHHhhh
Confidence            9999999999998753

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.39  E-value=2.6e-07  Score=97.22  Aligned_cols=93  Identities=35%  Similarity=0.481  Sum_probs=80.7

Q ss_pred             HHHHHHHcCCCCccCC--CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 043342          257 NLLKCIENGVSVNLRD--SEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI  334 (363)
Q Consensus       257 ~v~~LL~~g~~vn~~d--~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~  334 (363)
                      .+..-+..++++|..+  ..|.|+||.||..+..-++++|+++|+++|..|..|+||||.+...|+...+.+|+++|+++
T Consensus       636 ~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~  715 (785)
T KOG0521|consen  636 RIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP  715 (785)
T ss_pred             hhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccc
Confidence            3333344555555533  35899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHh
Q 043342          335 GMKDNDGNSPCHVCE  349 (363)
Q Consensus       335 ~~~d~~G~TpL~~A~  349 (363)
                      ++.+.+|.+|+++|.
T Consensus       716 ~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  716 NAFDPDGKLPLDIAM  730 (785)
T ss_pred             cccCccCcchhhHHh
Confidence            999999999999984

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.27  E-value=1.2e-06  Score=85.86  Aligned_cols=75  Identities=35%  Similarity=0.522  Sum_probs=64.1

Q ss_pred             hHHHHHHHcCCHHHHHHHH--hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          277 APLHWAVDRGHLNISELLV--SKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       277 TpLh~A~~~g~~~iv~~Ll--~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      -|||+++.....+-+..++  +....++.+|..|+||||+|+..|+...+++|+.+||++.++|++|++|||-|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHc
Confidence            4699998877765554433  33667889999999999999999999999999999999999999999999988754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.22  E-value=3.2e-06  Score=79.78  Aligned_cols=85  Identities=27%  Similarity=0.411  Sum_probs=70.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREA  322 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~  322 (363)
                      .--|..||+.|+.+.|+.|++.|.++|.+|....+||.+|+..||..++++|+++|+-...-..+|.-. ||++.+  ..
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn--d~  113 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN--DR  113 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh--HH
Confidence            457999999999999999999999999999999999999999999999999999999766545556444 555543  34


Q ss_pred             HHHHHHhC
Q 043342          323 IAQFLVKQ  330 (363)
Q Consensus       323 iv~~Ll~~  330 (363)
                      |-++|+.+
T Consensus       114 IR~mllsy  121 (516)
T KOG0511|consen  114 IRRMLLSY  121 (516)
T ss_pred             HHHHHHHH
Confidence            45566654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.21  E-value=5.2e-06  Score=78.41  Aligned_cols=73  Identities=25%  Similarity=0.304  Sum_probs=64.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 043342          276 RAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC  348 (363)
Q Consensus       276 ~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A  348 (363)
                      .--|..||+.|..+.++.|++.|.++|..|+....||.+|+.+||..+|++|+++||-...-..+|...+.=|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            4468899999999999999999999999999999999999999999999999999987766666777665433

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.21  E-value=9.6e-07  Score=85.36  Aligned_cols=77  Identities=22%  Similarity=0.336  Sum_probs=71.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHh
Q 043342          273 SEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK-QNADIGMKDNDGNSPCHVCE  349 (363)
Q Consensus       273 ~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~Gad~~~~d~~G~TpL~~A~  349 (363)
                      .++..++++|+..|.+..++.+.-.|.|++.+|.+.+|+||.|+..|+.+++++|+. .+.+++.+|..|+|||+-|.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            346678999999999999999999999999999999999999999999999999997 58999999999999998774

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.15  E-value=1.7e-06  Score=91.17  Aligned_cols=88  Identities=35%  Similarity=0.522  Sum_probs=81.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 043342          241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR  320 (363)
Q Consensus       241 ~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~  320 (363)
                      .|.++||.|+..|..-.+.+|++.|+++|.+|..|+||||.+...|+...+..|+.+|++.++.+.+|.+||++|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             HHHHHHHH
Q 043342          321 EAIAQFLV  328 (363)
Q Consensus       321 ~~iv~~Ll  328 (363)
                      .+++-+|.
T Consensus       735 ~d~~~l~~  742 (785)
T KOG0521|consen  735 ADIVLLLR  742 (785)
T ss_pred             ccHHHHHh
Confidence            66665554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.06  E-value=4.2e-06  Score=88.10  Aligned_cols=115  Identities=23%  Similarity=0.268  Sum_probs=91.7

Q ss_pred             ccCCCCchHHHHHHHHcCCHHHHHHHHHc-CCCCccCCCCCChHHHHHHHcCCHHHHHHH-HhCCCCCCCCCCCCCcHHH
Q 043342          236 ESGNDLKMDAIHAFAREGDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRGHLNISELL-VSKNADVNAKDNEGQTPLH  313 (363)
Q Consensus       236 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~-g~~vn~~d~~g~TpLh~A~~~g~~~iv~~L-l~~gadin~~d~~G~TpLh  313 (363)
                      ......|++.+|.++..+..-.+..+++- +......|.+|...+|+ |..++.+..-+| .-.|..++.+|..||||||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            34566789999999999999999999885 65566777888889999 445555554444 4568999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCC------CCCCCCCcHHHHHhcC
Q 043342          314 YAVVCDREAIAQFLVKQNADIG------MKDNDGNSPCHVCESD  351 (363)
Q Consensus       314 ~A~~~g~~~iv~~Ll~~Gad~~------~~d~~G~TpL~~A~~~  351 (363)
                      +|+.+|+..++..|+..|++..      ..+..|.|+.++|-++
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~  690 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARAN  690 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcc
Confidence            9999999999999998776543      3345688998888765

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.04  E-value=1.4e-05  Score=69.04  Aligned_cols=69  Identities=20%  Similarity=0.222  Sum_probs=53.9

Q ss_pred             CCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 043342          265 GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN-ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD  333 (363)
Q Consensus       265 g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g-adin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad  333 (363)
                      +.++|.+|..|+|+|+.|+..|..+.+.+|+.+| +.+.+.|..|.+++.+|-+.|...+++.|.++-.+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            3467778888888888888888888888888888 77888888888888888888888888887775433

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.89  E-value=2.1e-05  Score=77.95  Aligned_cols=66  Identities=29%  Similarity=0.357  Sum_probs=61.7

Q ss_pred             cccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 043342          235 EESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD  300 (363)
Q Consensus       235 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad  300 (363)
                      +...+..|.|+||+||+.|+..+.++|+=+|+++..+|..|+|+|.||-..|..+++.+|+++|+.
T Consensus       654 ~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  654 ETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             ccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCC
Confidence            345677889999999999999999999999999999999999999999999999999999999985

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.56  E-value=0.00034  Score=72.64  Aligned_cols=96  Identities=19%  Similarity=0.175  Sum_probs=77.6

Q ss_pred             cccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCC----------CCC
Q 043342          235 EESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV----------NAK  304 (363)
Q Consensus       235 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadi----------n~~  304 (363)
                      .++.|.-|+++|+.|+.+.+.+++.+|++++..+       ..+|.+|+..|..++|++++.+-...          ...
T Consensus        55 inc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~  127 (822)
T KOG3609|consen   55 INCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPH  127 (822)
T ss_pred             hhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCccc
Confidence            3567788899999999999999999999987554       34788899999999999999763322          112


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 043342          305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMK  337 (363)
Q Consensus       305 d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~  337 (363)
                      -..+.|||.+||.+++.+|+++|+++|+.+...
T Consensus       128 ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  128 FTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             CCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            235789999999999999999999999887543

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.27  E-value=0.00031  Score=68.78  Aligned_cols=64  Identities=22%  Similarity=0.285  Sum_probs=55.4

Q ss_pred             HHHHHHHHhCCCCCCCC------CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          288 LNISELLVSKNADVNAK------DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       288 ~~iv~~Ll~~gadin~~------d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ...+++|.+++.+.|..      +..-.|+||||+..|..++|.+||+.|+|+.++|..|.||..++.++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccH
Confidence            66788999998877653      44467999999999999999999999999999999999999988743

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.24  E-value=0.0007  Score=58.70  Aligned_cols=71  Identities=14%  Similarity=0.153  Sum_probs=62.9

Q ss_pred             cccCCCCchHHHHHHHHcCCHHHHHHHHHcC-CCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 043342          235 EESGNDLKMDAIHAFAREGDMDNLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD  305 (363)
Q Consensus       235 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g-~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d  305 (363)
                      .+.+|..|+|+|.+|+..|..+.+.+|+.+| +.+...|..+.+.+.+|-..|+..+++.|.+.-.+-...+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            4667889999999999999999999999999 8899999999999999999999999999988754433333

>smart00248 ANK ankyrin repeats

Probab=96.92  E-value=0.0018  Score=36.97  Aligned_cols=27  Identities=37%  Similarity=0.625  Sum_probs=16.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 043342          308 GQTPLHYAVVCDREAIAQFLVKQNADI  334 (363)
Q Consensus       308 G~TpLh~A~~~g~~~iv~~Ll~~Gad~  334 (363)
                      |.||+|+|+..++.+++++|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666665544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.88  E-value=0.003  Score=65.90  Aligned_cols=110  Identities=20%  Similarity=0.315  Sum_probs=87.8

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcC----CCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 043342          240 DLKMDAIHAFAREGDMDNLLKCIENG----VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA  315 (363)
Q Consensus       240 ~~g~t~Lh~Aa~~g~~~~v~~LL~~g----~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A  315 (363)
                      ..+..-...||..|+...|+.+++..    .++|..|.-|+++||+|+.+.+.+++++|++.+..+       .-+|-+|
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~a   95 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLA   95 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHH
Confidence            34456788899999999999998753    567889999999999999999999999999987765       4589999


Q ss_pred             HHcCCHHHHHHHHhCCCCC----------CCCCCCCCcHHHHHh--cCchHHH
Q 043342          316 VVCDREAIAQFLVKQNADI----------GMKDNDGNSPCHVCE--SDWPWML  356 (363)
Q Consensus       316 ~~~g~~~iv~~Ll~~Gad~----------~~~d~~G~TpL~~A~--~~~~~~~  356 (363)
                      +..|..++|++++.+-...          ...-..+-||+.+|+  +|++-++
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~  148 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQ  148 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHH
Confidence            9999999999999763221          223346789999996  4454443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.81  E-value=0.00052  Score=72.76  Aligned_cols=93  Identities=28%  Similarity=0.404  Sum_probs=72.2

Q ss_pred             cCCCCchHHHHHHHHcCCHHHHHHHH-HcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCC------CCCCCC
Q 043342          237 SGNDLKMDAIHAFAREGDMDNLLKCI-ENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA------KDNEGQ  309 (363)
Q Consensus       237 ~~~~~g~t~Lh~Aa~~g~~~~v~~LL-~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~------~d~~G~  309 (363)
                      ..+..+...+|.++ .++++...+++ -.|..++.+|..|+||||||+.+|+..++..|+..|++.++      ....|.
T Consensus       603 eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~  681 (975)
T KOG0520|consen  603 ELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGK  681 (975)
T ss_pred             hhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCC
Confidence            34555666788844 45555555444 46788999999999999999999999999999988776543      345699


Q ss_pred             cHHHHHHHcCCHHHHHHHHhC
Q 043342          310 TPLHYAVVCDREAIAQFLVKQ  330 (363)
Q Consensus       310 TpLh~A~~~g~~~iv~~Ll~~  330 (363)
                      |+-.+|...|+..+.-+|-+.
T Consensus       682 ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  682 TAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chhhhhhcccccchHHHHhhh
Confidence            999999999999888777653

>smart00248 ANK ankyrin repeats

Probab=96.60  E-value=0.0041  Score=35.37  Aligned_cols=28  Identities=50%  Similarity=0.930  Sum_probs=20.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCCC
Q 043342          275 GRAPLHWAVDRGHLNISELLVSKNADVN  302 (363)
Q Consensus       275 g~TpLh~A~~~g~~~iv~~Ll~~gadin  302 (363)
                      |.||+|+|+..++.++++.|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5677777777777777777777766553

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.31  E-value=0.0076  Score=59.36  Aligned_cols=71  Identities=23%  Similarity=0.349  Sum_probs=56.4

Q ss_pred             HHHHHHHHHcCCCCcc------CCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 043342          255 MDNLLKCIENGVSVNL------RDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV  328 (363)
Q Consensus       255 ~~~v~~LL~~g~~vn~------~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  328 (363)
                      ...+.+|.+++.+.|.      .+..-.|+||+|+..|...+|.+||+.|+|+..+|..|+||..++.   +.++-..++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence            4567777777766643      3444779999999999999999999999999999999999998876   444444333

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.78  E-value=1.3  Score=39.97  Aligned_cols=91  Identities=20%  Similarity=0.238  Sum_probs=64.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccCC----CCCChHHHHHHH--cCCHHHHHHHHhCC-CCCCC---CCCCCCcHH
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLRD----SEGRAPLHWAVD--RGHLNISELLVSKN-ADVNA---KDNEGQTPL  312 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d----~~g~TpLh~A~~--~g~~~iv~~Ll~~g-adin~---~d~~G~TpL  312 (363)
                      .++|-+++..+..+++.+|+.+= +....|    ..+.--+-++..  .....+++.+|.+| +++|.   +-+.|.|-|
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtML  258 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTML  258 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHH
Confidence            56788888777888888888641 111111    112223444433  34678899999987 46665   356899999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCC
Q 043342          313 HYAVVCDREAIAQFLVKQNADI  334 (363)
Q Consensus       313 h~A~~~g~~~iv~~Ll~~Gad~  334 (363)
                      .-|+..++.+++.+||++||-.
T Consensus       259 DNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  259 DNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HhHHhcCcHHHHHHHHHcCccc
Confidence            9999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=81.95  E-value=3.4  Score=30.51  Aligned_cols=48  Identities=13%  Similarity=0.305  Sum_probs=36.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhC
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK  297 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  297 (363)
                      ...+..|+..|+.++++.+++.+ .++      ...+..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            35678888888888888888654 221      3568888888888888888876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	363
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-23
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-21
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-20
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-18
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-18
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		9e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-17
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-17
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-16
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-15
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-15
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-15
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-15
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-14
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-14
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-14
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-14
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-14
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-14
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-14
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-14
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-14
2cqu_A	116	Solution Structure Of Rsgi Ruh-045, A Human Acyl-Co		2e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-13
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-13
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-13
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-13
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		5e-13
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-12
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-11
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-11
1hbk_A	89	Acyl-Coa Binding Protein From Plasmodium Falciparum		3e-10
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-10
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-10
2cop_A	109	Solution Structure Of Rsgi Ruh-040, An Acbp Domain		4e-10
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		9e-10
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-09
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-09
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-09
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-09
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-09
2lbb_A	96	Solution Structure Of Acyl Coa Binding Protein From		2e-09
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-09
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		6e-09
3flv_A	119	The Crystal Structure Of Human Acyl-Coenzymea Bindi		6e-09
1uoh_A	226	Human Gankyrin Length = 226		6e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-09
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-09
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-08
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-08
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-08
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		2e-08
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-08
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-08
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-08
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-08
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		2e-08
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		2e-08
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		2e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-08
2wh5_A	106	Crystal Structure Of Human Acyl-Coa Binding Domain		1e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-07
2fdq_A	86	Crystal Structure Of Acbp From Armadillo Harderian		2e-07
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-07
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		3e-07
1st7_A	86	Solution Structure Of Acyl Coenzyme A Binding Prote		5e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		5e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-07
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		6e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		7e-07
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		9e-07
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-06
1hb6_A	86	Structure Of Bovine Acyl-Coa Binding Protein In Ort		1e-06
2cb8_A	87	High Resolution Crystal Structure Of Liganded Human		1e-06
2fj9_A	86	High Resolution Crystal Structure Of The Unliganded		1e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		5e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		5e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		7e-06
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		8e-06
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		9e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		9e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		9e-06
3fp5_A	106	Crystal Structure Of Acbp From Moniliophthora Perni		1e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-05
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		3e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		6e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		6e-05
2nyj_A	273	Crystal Structure Of The Ankyrin Repeat Domain Of T		8e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		8e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		9e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		9e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		1e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		1e-04
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		1e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		2e-04
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		4e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 64/99 (64%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
           A  G+ D +   IENG  VN  DS+GR PLH+A   GH  I +LL+SK ADVNAKD++G+
Sbjct: 12  AENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           TPLHYA     + I + L+ + AD+  KD+DG +P H  
Sbjct: 72  TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYA 110

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 64/97 (65%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
           A  G+ D +   IENG  VN  DS+GR PLH A + GH  + +LL+SK ADVNAKD++G+
Sbjct: 12  AENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           TPLH+A     + + + L+ + AD+  KD+DG +P H
Sbjct: 72  TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLH 108

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 62/99 (62%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
           A  G+ D +   +ENG   N  DS+GR PLH+A + GH  I +LL+SK AD NAKD++G+
Sbjct: 12  AENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           TPLHYA     + I + L+ + AD   KD+DG +P H  
Sbjct: 72  TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYA 110

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 62/99 (62%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
           A  G+ D +   +ENG  VN  DS+G+ PLH A + GH  + +LL+S+ AD NAKD++G+
Sbjct: 12  AENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK 71
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           TPLH A     + + + L+ Q AD   KD+DG +P H+ 
Sbjct: 72  TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 110

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN +D +G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNAKD +G TPLH A       I + L+K  AD+  KD DG +P H+ 
Sbjct: 70  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 120

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 56/99 (56%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
           AR G  D +   + NG  VN +D +G  PLH A   GHL I E+L+   ADVNAKD +G 
Sbjct: 10  ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           TPLH A       I + L+K  AD+  KD DG +P H+ 
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  AR G ++ +   +E G  VN +D  GR PLH A   GHL + +LL+   ADVNAKD
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
             G+TPLH A       + + L++  AD+  KD +G +P H+ 
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 56/99 (56%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
           AR G  D +   + NG  VN +D +G  PLH A   GHL I E+L+   ADVNAKD +G 
Sbjct: 10  ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           TPLH A       I + L+K  AD+  KD DG +P H+ 
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 108

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D++G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D  G TPLH A       I + L+K  AD+   DNDG++P H+ 
Sbjct: 70  GADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D  G+ PLH A  +GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D  G TPLH A +     I + L+K  AD+   D  G +P H+ 
Sbjct: 70  GADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLA 120

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D  G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD 351
            ADVNA DN G TPLH A       I + L+K  AD+  KD +G +P H+   D
Sbjct: 70  GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYD 123

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN RD  G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNAKD+ G TPLH A       I + L+K  AD+   D+ G +P H+ 
Sbjct: 70  GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLA 120

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D+ G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGRKLLEA-ARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWM 355
            ADV+A D  G TPLH A       I + L+K  AD+   D+DG +P H+  + W ++
Sbjct: 70  GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA-AKWGYL 126

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D+ G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D  G TPLH A +     I + L+K  AD+   D  G++P H+ 
Sbjct: 70  GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D+ G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D  G TPLH A +     I + L+K  AD+   D  G++P H+ 
Sbjct: 70  GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 51/99 (51%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
           AR G  D +   + NG   N  D  GR PLH A   GHL I E+L+   ADVNA D  G 
Sbjct: 10  ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           TPLH A       I + L+K  AD+  KD  G +P ++ 
Sbjct: 70  TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLA 108

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D+ G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D  G TPLH A       I + L+K  AD+   D  G++P H+ 
Sbjct: 70  GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLA 120

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D +G  PLH A D  HL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA DN+G TPLH A +     I + L+K  AD+  +D  G +   + 
Sbjct: 70  GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D+ G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D+ G TPL  A +     I + L+K  AD+   D +G++P H+ 
Sbjct: 70  GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D  G  PLH  V+ GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD 351
            ADVNA D  G TPLH A       I + L+K  AD+   D  G +P H+   D
Sbjct: 70  AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAED 123

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D  G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D  G TPLH A       I + L+K  AD+  KD++G +P H+ 
Sbjct: 70  GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLA 120

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   I NG  VN  D+ G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADV+A D  G TPLH A +     I + L+K  AD+   D  G++P H+ 
Sbjct: 70  GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D +G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA+DN G TPLH A +     I + L+K  AD+  +D  G +   + 
Sbjct: 70  GADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 56/103 (54%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  A  G ++ +   ++NG  VN  DS G  PLH A DRGHL + E+L+   ADVNA D
Sbjct: 51  LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAND 110
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           + G TPLH A       I + L+K  AD+  +D  G +   + 
Sbjct: 111 HNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153

>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa Binding Protein Length = 116

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 137 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYID 191
           N+V+L+LYALYK ATEGPC+ P+P    +  +AKW AW  LG++P E A Q Y+D
Sbjct: 36  NEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVD 90

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +     NG  VN  D  G  PLH A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA  N G+TPLH A   D   I + L+K  AD+  +D  G +   + 
Sbjct: 70  GADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D +G  PLH A   GH  I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA+D +G TPLH A       I + L+K  AD+  +D  G +P H+ 
Sbjct: 70  GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A  R G  D +   + NG  VN  D  G  PLH A  RGHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-TRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D+ G+TPLH A       I + L++  AD+  +D  G +   + 
Sbjct: 70  GADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A  R G  D +   + NG  VN  D  G  PLH A  RGHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-TRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA+D  G+TPLH A       I + L++  AD+  +D  G +   + 
Sbjct: 70  GADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN +D  G  PL+ A   GHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D  G TPLH A       IA+ L+K  AD+  +D  G +   + 
Sbjct: 70  GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G DL    + A A  G  D +   + NG  VN  D  G  PLH A   G L I E+L+  
Sbjct: 3   GQDLGKKLLEA-AAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN 61
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D+ G TPLH A       I + L+K  AD+   D  G +P H+ 
Sbjct: 62  GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A  R G  D +   + NG  VN  D  G  PLH A  RGHL I E+L+  
Sbjct: 11  GSDLGKKLLEA-TRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D  G+TPLH A       I + L++  AD+  +D  G +   + 
Sbjct: 70  GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  AR G ++ +   +E G  VN +D  GR PLH A   GHL + +LL+   ADVNAKD
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNA 332
             G+TPLH A       + + L++  A
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  VN  D  G  PLH A    HL I E+L+  
Sbjct: 11  GSDLGKKLLEA-ARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ADVNA D  G+TPLH   +     I + L+K  AD+  +D  G +   + 
Sbjct: 70  GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 55/95 (57%)
Query: 253 GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
           GD + +L+ +E G  +N  + +G   LH A    ++++ + LV   A++N  DNEG  PL
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
Query: 313 HYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           H A  C    IA++L+ Q A +G  +++G++P  +
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  A+ G  + + K +  G  VN R  +G  PLH A   GH  I +LL++K ADVNA+ 
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADI 334
            +G TP H A       I + L  + AD+
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADV 101

>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum Length = 89

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 44/64 (68%)
Query: 137 NDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTEL 196
           N+++L LY  YK +T G C+  +PSA K   R K++AW+ +  +  E+A ++Y+DIV+E+
Sbjct: 24  NELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEI 83
Query: 197 YPTW 200
           +P W
Sbjct: 84  FPYW 87

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 245 AIHAFAREGDMDNLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA 303
            +H  A++G  + +   + NG + VN +D  G  P+ WA +  H+++ +LL+SK +D+N 
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139
Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           +DNE    LH+A       IA+ L+    D+   +  G+SP H+
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  A+ G        +  GVS + R    R PLH A   GH NI E+L+   ADVNAKD
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADI 334
               T LH+A   + + + + L+K  AD+
Sbjct: 98  MLKMTALHWATEHNHQEVVELLIKYGADV 126

>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From Human Cdna Length = 109

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 133 QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI 192
           Q  S +  L LYA YK    G C+ P+PS      + KW+AW+ LG   P +AMQ+YI +
Sbjct: 24  QVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAV 83
Query: 193 VTELYPTWAAGSSLKSKRGQE 213
           V +L P W     +  K+G+E
Sbjct: 84  VKKLDPGW--NPQIPEKKGKE 102

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 255 MDNLL-KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLH 313
           M+N + K +EN   +  +D EG   L WAV    L I+E L+SK ++VN KD  G+TPL 
Sbjct: 47  MENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106
Query: 314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           ++++     ++ FL++  A++  ++ +G +P  V 
Sbjct: 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVA 141

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 251 REGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQT 310
           + GD+D +   +  G  VN     GR PLH+A D G L I E L+ K AD+NA D    T
Sbjct: 16  KNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT 75
Query: 311 PLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
           PL  AV     +  + L+ + AD  +K  DG
Sbjct: 76  PLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 47/91 (51%)
Query: 251 REGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQT 310
           + GD+D +   +  G  VN     GR PLH+A D G L I E L+ K AD+NA D    T
Sbjct: 11  KNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHIT 70
Query: 311 PLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
           PL  AV     +  + L+ + AD  +K  DG
Sbjct: 71  PLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 101

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  A  G  D +   +++G +   R+++   PLH A  +GH  + + L+  NA  N KD
Sbjct: 90  LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
             G TPL YA       +   L++  A I   +N GN+  H
Sbjct: 150 LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALH 190

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 250 AREGDMDNLLK-CIENGVSVNLRDSEGR--APLHWAVDRGHLNISELLVSKNADVNAKDN 306
           A+ GD++ + K C     SVN RD EGR   PLH+A     +++ E L+   ADV+AKD 
Sbjct: 20  AKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 307 EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
            G  PLH A       +A+ LVK  A + + D    +P H
Sbjct: 78  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 117

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 250 AREGDMDNLLK-CIENGVSVNLRDSEGR--APLHWAVDRGHLNISELLVSKNADVNAKDN 306
           A+ GD++ + K C     SVN RD EGR   PLH+A     +++ E L+   ADV+AKD 
Sbjct: 18  AKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 307 EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
            G  PLH A       +A+ LVK  A + + D    +P H
Sbjct: 76  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 115

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 250 AREGDMDNLLK-CIENGVSVNLRDSEGR--APLHWAVDRGHLNISELLVSKNADVNAKDN 306
           A+ GD++ + K C     SVN RD EGR   PLH+A     +++ E L+   ADV+AKD 
Sbjct: 16  AKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 307 EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
            G  PLH A       +A+ LVK  A + + D    +P H
Sbjct: 74  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 113

>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From Babesia Bovis T2bo Length = 96

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 136 SNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTE 195
           SND +L  Y  YK AT G C+ P+P  L++  + KW+AW  L  M  E A + Y+ ++  
Sbjct: 30  SNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLLDT 89
Query: 196 LYPTW 200
           L P+W
Sbjct: 90  LAPSW 94

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (44%)
Query: 216 ASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEG 275
           A+ +  A M  +  S       GN   +  +H  A+EG +      I++GV V+     G
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311
Query: 276 RAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIG 335
             PLH A   G++ + + L+   ADVNAK   G +PLH A       I   L+K  A   
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371
Query: 336 MKDNDGNSPCHVCE 349
              +DG +P  + +
Sbjct: 372 EVSSDGTTPLAIAK 385

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/80 (40%), Positives = 44/80 (55%)
Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ 309
           AR G  D +   + NG  VN +D +G  PLH A   GHL I E+L+   ADVNA+D  G+
Sbjct: 10  ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 69
Query: 310 TPLHYAVVCDREAIAQFLVK 329
           T    ++    E +A+ L K
Sbjct: 70  TAFDISIDNGNEDLAEILQK 89

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 249 FAREGDMDNLLKCIENGVSVNLR-DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE 307
            A  G +D L + I    S+  R D + R  LHWA   GH  I E L+     VN KD+ 
Sbjct: 13  LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
           G +PLH A    R+ I + L+ + A +   + +G +P H   S
Sbjct: 73  GWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115

>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding Domain Containing 5 Length = 119

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 136 SNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTE 195
           +N++ L+ Y+ YK ATEGPC   +P       R KW AW  LG M  EEAM  Y++ + +
Sbjct: 47  TNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKK 106
Query: 196 LYPT 199
           +  T
Sbjct: 107 IIET 110

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  A +   +  +  +E G + + +D      +H A  +G+L +  +L+   A  N +D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 169
Query: 306 NEGQTPLHYAVVCDREAI--AQFLVKQNADIGMKDNDGNSPCHVCESDWPWML 356
            EG TPLH A  CD E +  A+ LV Q A I +++ +  +P  V +     +L
Sbjct: 170 TEGNTPLHLA--CDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLIL 220

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  A +   +  +  +E G + + +D      +H A  +G+L +  +L+   A  N +D
Sbjct: 111 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 170
Query: 306 NEGQTPLHYAVVCDREAI--AQFLVKQNADIGMKDNDGNSPCHVCESDWPWML 356
            EG TPLH A  CD E +  A+ LV Q A I +++ +  +P  V +     +L
Sbjct: 171 TEGNTPLHLA--CDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLIL 221

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+D     +H   REG    +   I  G  +N+ +     PLH A   GH +I + L+  
Sbjct: 35  GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
            AD+NA +  G  PLHYA    ++ +A+ LV   A + + +  G  P
Sbjct: 95  KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 259 LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC 318
           L+ ++ G S N++D+ G +P+H A   G L+  ++LV   ADVN  D  G  P+H AV  
Sbjct: 58  LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 117
Query: 319 DREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
              A+  FL  ++ D+  +D  G +P  + 
Sbjct: 118 GHTAVVSFLAAES-DLHRRDARGLTPLELA 146

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 51/107 (47%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+D     +H   REG    +   I  G  +N+ +     PLH A   GH +I + L+  
Sbjct: 30  GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
            AD+NA +  G  PLHYA    ++ +A+ LV   A + + +  G  P
Sbjct: 90  KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 136

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
           + +  G + +L+D  G A +H A   G L+  + L+   ADVN +DNEG  PLH A    
Sbjct: 55  RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEG 114
Query: 320 REAIAQFLVKQNA-DIGMKDNDGNSPC 345
              + +FLVK  A ++G +++ G++ C
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 259 LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC 318
           L+ ++ G S N++D+ G +P+H A   G L+  ++LV   ADVNA D+ G  P+H A+  
Sbjct: 60  LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 119
Query: 319 DREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
              ++  FL  ++ D+  +D  G +P  +  
Sbjct: 120 GHSSVVSFLAPES-DLHHRDASGLTPLELAR 149

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 259 LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC 318
           L+ ++ G S N++D+ G +P+H A   G L+  ++LV   ADVNA D+ G  P+H A+  
Sbjct: 58  LELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIRE 117
Query: 319 DREAIAQFLVKQNADIGMKDNDGNSPCHVCE 349
              ++  FL  ++ D+  +D  G +P  +  
Sbjct: 118 GHSSVVSFLAPES-DLHHRDASGLTPLELAR 147

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
           + +  G + +L+D  G A +H A   G L+  + L+   ADVN +DNEG  PLH A    
Sbjct: 55  RLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 320 REAIAQFLVKQNA-DIGMKDNDGNSPC 345
              + +FLVK  A ++G +++ G++ C
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 259 LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC 318
           L+ ++ G S N++D+ G +P+H A   G L+  ++LV   ADVN  D  G  P+H AV  
Sbjct: 52  LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111
Query: 319 DREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
              A+  FL  ++ D+  +D  G +P  + 
Sbjct: 112 GHTAVVSFLAAES-DLHRRDARGLTPLELA 140

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 220 SKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPL 279
           SK   G + S++  E+    D   + +H  A+ G++  L +C++N V VN  D  G   L
Sbjct: 54  SKGRTGLIPSNYVAEQAESID---NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL 110
Query: 280 HWAVDRGHLNISELLVSK-NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD 338
           +WA   GH +I E L ++ N ++N ++  G T LH A       I Q L+ + A   +++
Sbjct: 111 YWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
           + +  G + +L+D  G A +H A   G L+  + L+   ADVN +DNEG  PLH A    
Sbjct: 55  RLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 320 REAIAQFLVKQNA-DIGMKDNDGNSPC 345
              + +FLVK  A ++G +++ G++ C
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 252 EGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
           EG+ D + + I      +L + EG   LH AV  GH  I + LV    +VNA D++G TP
Sbjct: 47  EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 312 LHYAVVCDREAIAQFLVKQNADI-GMKDNDGNSPCHVCE 349
           LH A  C+   + +FLV+  A +  M  +D  +    CE
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 252 EGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTP 311
           EG+ D + + I      +L + EG   LH AV  GH  I + LV    +VNA D++G TP
Sbjct: 47  EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 312 LHYAVVCDREAIAQFLVKQNADI-GMKDNDGNSPCHVCE 349
           LH A  C+   + +FLV+  A +  M  +D  +    CE
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
           + +  G + +L+D  G A +H A   G L+  + L+   ADVN +DNEG  PLH A    
Sbjct: 55  RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 320 REAIAQFLVKQNA-DIGMKDNDGNSPC 345
              + +FLVK  A ++G +++ G++ C
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 260 KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD 319
           + +  G + +L+D  G A +H A   G L+  + L+   ADVN +DNEG  PLH A    
Sbjct: 55  RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 320 REAIAQFLVKQNA-DIGMKDNDGNSPC 345
              + +FLVK  A ++G +++ G++ C
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 256 DNLLKC---IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
           ++LL C   ++NG +VN  DS GR PLH A   GH  ++ L + + AD+ A+D+EG+ PL
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Query: 313 HYAV 316
             A+
Sbjct: 306 TIAM 309

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 256 DNLLKC---IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
           ++LL C   ++NG +VN  DS GR PLH A   GH  ++ L + + AD+ A+D+EG+ PL
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Query: 313 HYAV 316
             A+
Sbjct: 306 TIAM 309

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 256 DNLLKC---IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
           ++LL C   ++NG +VN  DS GR PLH A   GH  ++ L + + AD+ A+D+EG+ PL
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPL 305
Query: 313 HYAV 316
             A+
Sbjct: 306 TIAM 309

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 249 FAREGDMDNLLKCIENGVSVNLR-DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE 307
            A  G +D L + I    S+  R D + R  LHWA   GH  I E L+     VN KD+ 
Sbjct: 13  LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
           G +PLH A     + I + L+ + A +   + +G +P H   S
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  V  +D  G  PLH A   GHL + +LL+  
Sbjct: 3   GSDLGKKLLEA-ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFL 327
            ADVNA+D  G+T    ++    E +A+ L
Sbjct: 62  GADVNAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4 Complexed With Stearoyl-Coa Length = 106

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 30/55 (54%)
Query: 136 SNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYI 190
           S +  L+ Y+ YK AT GPC  P+P       R KW AW  LG M  EEAM  YI
Sbjct: 31  SYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYI 85

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           G+DL    + A AR G  D +   + NG  V  +D  G  PLH A   GHL + +LL+  
Sbjct: 21  GSDLGKKLLEA-ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFL 327
            ADV A+D  G+T    ++    E +A+ L
Sbjct: 80  GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 191 DIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMD-----A 245
           D  T L     +G  L++   +E+       AP   V S F Y+  S ++ + D     A
Sbjct: 10  DGFTPLMIASCSGGGLETGNSEEE-----EDAP--AVISDFIYQGASLHN-QTDRTGETA 61
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA-DVNAK 304
           +H  AR    D   + +E     N++D+ GR PLH AV      + ++L+   A D++A+
Sbjct: 62  LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 121
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
            ++G TPL  A     E + + L+  +AD+   D+ G S  H
Sbjct: 122 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 163

>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland Length = 86

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
           K ++D  L +Y+ YK AT G  +  +P  L    +AKW AW +L     E+AM+ YID V
Sbjct: 18  KPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYIDKV 77
Query: 194 TEL 196
            EL
Sbjct: 78  EEL 80

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 191 DIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMD-----A 245
           D  T L     +G  L++   +E+       AP   V S F Y+  S ++ + D     A
Sbjct: 9   DGFTPLMIASCSGGGLETGNSEEE-----EDAP--AVISDFIYQGASLHN-QTDRTGETA 60
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA-DVNAK 304
           +H  AR    D   + +E     N++D+ GR PLH AV      + ++L+   A D++A+
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
            ++G TPL  A     E + + L+  +AD+   D+ G S  H
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 227 VFSSFAYEEESGNDLKMD-----AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHW 281
           V S F Y+  S ++ + D     A+H  AR    D   + +E     N++D+ GR PLH 
Sbjct: 6   VISDFIYQGASLHN-QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 282 AVDRGHLNISELLVSKNA-DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDND 340
           AV      + ++L+   A D++A+ ++G TPL  A     E + + L+  +AD+   D+ 
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
Query: 341 GNSPCH 346
           G S  H
Sbjct: 125 GKSALH 130

>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From Yeast Length = 86

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
           K S D  L+LYALYK AT G     +P    M  R KW+AW+ L     E+A ++YI +V
Sbjct: 18  KPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALV 77
Query: 194 TELYPTWAA 202
            +L   +++
Sbjct: 78  DQLIAKYSS 86

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGR--APLHWAVDRGHLNISELLVSK 297
           + K D +   AR G+ + L+  +   ++VN   S+GR   PLH A     + I +LL+  
Sbjct: 22  EYKKDELLEAARSGNEEKLMALL-TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80
Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
            ADV+AKD  G  PLH A       + + L+K  A +   D    +P H
Sbjct: 81  GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 228 FSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGH 287
            S  A  ++ G DL    +H   R+G +  +++ ++ G   +L D EG + +H A   GH
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 288 LNISELLVSKNADVNAKDNEGQTPLHYA 315
            +I   L++K  DV+  D  G TPL +A
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWA 149

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 225 GPVFSSFAYEEESGNDLKMD-----AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPL 279
           G V S F Y+  S ++ + D     A+H  AR    D   + +E      ++D+ GR PL
Sbjct: 1   GSVISDFIYQGASLHN-QTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPL 59
Query: 280 HWAVDRGHLNISELLVSKNA-DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD 338
           H AV      + ++L+   A D++A+ ++G TPL  A     E + + L+  +AD+   D
Sbjct: 60  HAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVD 119
Query: 339 NDGNSPCH 346
           + G S  H
Sbjct: 120 DLGKSALH 127

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  + +GD+ ++   ++NG   N++D  G  PLH A + GHL + ELL+   A VN   
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNA 332
            +  +PLH A       I + L+   A
Sbjct: 74  YQNDSPLHDAAKNGHVDIVKLLLSYGA 100

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
Query: 191 DIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGND----LKMDAI 246
           D  T L     +G  L++   +E+       AP   V S F Y+  S ++        A+
Sbjct: 9   DGFTPLMIASCSGGGLETGNSEEE-----EDAP--AVISDFIYQGASLHNQTDRTGATAL 61
Query: 247 HAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA-DVNAKD 305
           H  A     D   + +E     N++D+ GR PLH AV      + ++L+   A D++A+ 
Sbjct: 62  HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           ++G TPL  A     E + + L+  +AD+   D+ G S  H
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA-DVNAKDNEGQTPLHYAVVCD 319
            ++ G   N +D+ GR PLH AV    + + ++L+   A ++NA+ ++G TPL  A    
Sbjct: 70  LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 320 REAIAQFLVKQNADIGMKDNDGNSPCH 346
            E + + L+  +ADI   DN G +  H
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALH 156

>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Orthorhombic Crystal Form Length = 86

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
           K +++  L +Y+ YK AT G  +  +P  L    +AKW AW +L     E+AM+ YID V
Sbjct: 18  KPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKV 77
Query: 194 TEL 196
            EL
Sbjct: 78  EEL 80

>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp Length = 87

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
           K S++  L +Y  YK AT G  +  +P  L  T +AKW AW +L     E+AM+ YI+ V
Sbjct: 19  KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKV 78
Query: 194 TEL 196
            EL
Sbjct: 79  EEL 81

>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human Acbp Length = 86

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
           K S++  L +Y  YK AT G  +  +P  L  T +AKW AW +L     E+AM+ YI+ V
Sbjct: 18  KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKV 77
Query: 194 TEL 196
            EL
Sbjct: 78  EEL 80

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKD-NEGQTPLHYAVVCDREAIAQFLVKQNAD 333
           G   LH A   G+L I ELLVS  ADVNA++   G+T LH AV      +   L+K  AD
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 334 IGMKDNDGNSP 344
           +      G SP
Sbjct: 177 VNRVTYQGYSP 187

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKD-NEGQTPLHYAVVCDREAIAQFLVKQNAD 333
           G   LH A   G+L I ELLVS  ADVNA++   G+T LH AV      +   L+K  AD
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Query: 334 IGMKDNDGNSP 344
           +      G SP
Sbjct: 174 VNRVTYQGYSP 184

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 178 GAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQED--AASTDSKAPMGPVFSSFAYEE 235
           G  P   A+Q   + + EL     A   L+ K G      A+      +  +F S   + 
Sbjct: 59  GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Query: 236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLR-----DSE-----GRAPLHWAVDR 285
              +     A    A  G +  L    + G +VNLR     D E     G   L  A ++
Sbjct: 119 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178
Query: 286 GHLNISELLVSK-NADVNAKDNEGQTPLHYAVVC----DREAIAQFLVKQNADIGMKDND 340
           GH+ + ++L+ +  ADVNA DN G+  L +A++     D EAI   L+   AD+ ++   
Sbjct: 179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 238
Query: 341 GNSP 344
           G +P
Sbjct: 239 GKTP 242

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 17/181 (9%)
Query: 181 PPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQED--AASTDSKAPMGPVFSSFAYEEESG 238
           P   A+Q   + + EL     A   L+ K G      A+      +  +F S   +    
Sbjct: 42  PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101
Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLR-----DSE-----GRAPLHWAVDRGHL 288
           +     A    A  G +  L    + G +VNLR     D E     G   L  A ++GH+
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161
Query: 289 NISELLVSK-NADVNAKDNEGQTPLHYAVVC----DREAIAQFLVKQNADIGMKDNDGNS 343
            + ++L+ +  ADVNA DN G+  L +A++     D EAI   L+   AD+ ++   G +
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221
Query: 344 P 344
           P
Sbjct: 222 P 222

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 254 DMDNLLKCIENGVSVNLRDSEGR-APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPL 312
           D+D + + +E G +VN ++ EG   PLH AV     +I ELL+   AD   +   G TP 
Sbjct: 17  DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 313 HYAVVCDREAIAQFLVKQNADI 334
             A +     + +  + + AD+
Sbjct: 77  LLAAIAGSVKLLKLFLSKGADV 98

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 258 LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK--NADVNAKDNEGQTPLHYA 315
           LL  +EN    +  D  G  P H A   G+L + + L  +    D+N   N+G T LH A
Sbjct: 55  LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114
Query: 316 VVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           V      ++QFL++  A + +KD     P H
Sbjct: 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 258 LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK--NADVNAKDNEGQTPLHYA 315
           LL  +EN    +  D  G  P H A   G+L + + L  +    D+N   N+G T LH A
Sbjct: 55  LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114
Query: 316 VVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           V      ++QFL++  A + +KD     P H
Sbjct: 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 258 LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK--NADVNAKDNEGQTPLHYA 315
           LL  +EN    +  D  G  P H A   G+L + + L  +    D+N   N+G T LH A
Sbjct: 55  LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114
Query: 316 VVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           V      ++QFL++  A + +KD     P H
Sbjct: 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145

>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa Length = 106

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 134 KVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV 193
           K + D QL  Y  +K AT G  +  +P  +  T +AKW AW+ +     E A QKY++ +
Sbjct: 25  KPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEKL 84
Query: 194 TEL 196
            E+
Sbjct: 85  LEI 87

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 11/150 (7%)
Query: 203 GSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAI------HAFAREGDMD 256
           GS + S  G++     D   P GP    F       N L  DA+      H  A  G   
Sbjct: 18  GSHMASMDGKQ--GGMDGSKPAGP--RDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQL 73
Query: 257 NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV 316
           +L   I  G +VN+  ++  +PLH A   GHL+  ++L+   A VN    +  TPL  A 
Sbjct: 74  SLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC 133
Query: 317 VCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           V         L++  A +   ++D  SP H
Sbjct: 134 VSGSWDCVNLLLQHGASV-QPESDLASPIH 162

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN 331
           + EG   LH A+   + +I + L++  A+VN+ D+ G TPLH A  C+   I   LV+  
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 332 ADI-GMKDNDGNSPCHVCE 349
           A I     +DG +    C+
Sbjct: 111 AAIFATTLSDGATAFEKCD 129

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNA 299
           + + A+     + D++ +L+    G ++N + S+ G+  L  AV  G +++ + L++  A
Sbjct: 149 IMLTALATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEA 207
Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ-NADIGMKDNDGNSPCHVC----ESDWPW 354
           DVN +D++G T L  A     + IA  L+   + DI + D DG++   V     +S+   
Sbjct: 208 DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIAS 267
Query: 355 MLHA 358
           ML++
Sbjct: 268 MLYS 271

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 272 DSEGRAPLHWAVDRGHL----NISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFL 327
           D +G  PLH AV +G+L     +  L      +++  +N  QTPLH AV+    ++ + L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 328 VKQNADIGMKDNDGNSPCHV-CESDWPWMLHA 358
           V   A     D  G +  H+ CE   P  L A
Sbjct: 66  VTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97

>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1 Length = 273

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE--------------GQTPLHYAVVCD 319
           +G+  LH A++R +  +  LLV   ADV A  N               G+ PL  A   +
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 320 REAIAQFLVK---QNADIGMKDNDGNSPCH 346
           + AI +FL++   Q ADI  +D+ GN+  H
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLH 189

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 43/100 (43%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
           ++H  A +G+M  L   IE    +N  D EG  PL WA   G + + E L+   AD    
Sbjct: 22  SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
               ++ L  A       I + L+    D+   D +G +P
Sbjct: 82  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 121

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 245 AIHAFAREGDMDNLLKCIENGVS-VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA 303
           +IH  A +G++D L + +  G + VN  D  G  PL WA   G +     L+   AD + 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAKG 361
              E ++ L  A       I   L++++ DI + D +G +P          +L+A +G
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTP----------LLYAVRG 112

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 43/100 (43%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
           ++H  A +G+M  L   IE    +N  D EG  PL WA   G + + E L+   AD    
Sbjct: 4   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
               ++ L  A       I + L+    D+   D +G +P
Sbjct: 64  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 103

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDN-------------EGQTPLHYAVVCDR 320
           EG+  LH AV   ++N+   L+++ A V+A+                G+ PL +A     
Sbjct: 74  EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 321 EAIAQFLVKQNADIGMKDNDGNSPCHV 347
           E I + L++  ADI  +D+ GN+  H+
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHI 160

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 43/100 (43%)
Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
           ++H  A +G+M  L   IE    +N  D EG  PL WA   G + + E L+   AD    
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
               ++ L  A       I + L+    D+   D +G +P
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 105

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 245 AIHAFAREGDMDNLLKCIENGVS-VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA 303
           +IH  A +G++D L + +  G + VN  D  G  PL WA   G +     L+   AD + 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPC 345
              E ++ L  A       I   L++++ DI + D +G +P 
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 231 FAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRD--SEGRAP----LHWAV- 283
           +A ++ +    K+ ++    +  D+  LL+   +GV +  +   + G  P    LH AV 
Sbjct: 119 YARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVR 178
Query: 284 --DRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
             DR  L+I + LV  + +++ +  +G T LHY  + D     + L++  A I + +  G
Sbjct: 179 SVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG 238
Query: 342 NSP 344
            +P
Sbjct: 239 ETP 241

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H  A  G   +L   I  G +VN+  ++  +PLH A   GHL+  ++L+   A VN   
Sbjct: 7   MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 306 NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
            +  TPL  A V         L++  A +   ++D  SP H
Sbjct: 67  ADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIH 106

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
           +D   + IH  AR+G  D + + IE GVS  +++  G   LH A   G ++ ++ L S  
Sbjct: 17  DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV- 75
Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIG 335
            +V++  + GQ P+H AV  ++  +   LV+   + G
Sbjct: 76  GEVHSLWH-GQKPIHLAVXANKTDLVVALVEGAKERG 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	363
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-31
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-30
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-28
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-17
2wh5_A	106	Acyl-COA-binding domain-containing protein 4; alte	1e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-30
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-29
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-22
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-30
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-08
3flv_A	119	Acyl-COA-binding domain-containing protein 5; lipi	2e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-28
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-30
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-25
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-29
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-22
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-30
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-10
2cqu_A	116	Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi	2e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-30
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-28
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-26
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-30
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-28
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-26
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-25
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-29
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-28
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-29
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-29
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-29
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-04
2lbb_A	96	Acyl COA binding protein; protein binding, structu	2e-29
1hbk_A	89	ACBP, acyl-COA binding protein; fatty acid metabol	2e-29
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-29
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-07
2cop_A	109	Acyl-coenzyme A binding domain containing 6; acyl	6e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-06
3fp5_A	106	Acyl-COA binding protein; ACBP, cacao disease, fat	7e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-24
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-24
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-23
1st7_A	86	ACBP, acyl-COA-binding protein; four helix bundle,	2e-28
3epy_A	89	Acyl-COA-binding domain-containing protein 7; acyl	6e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-24
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-09
2cb8_A	87	Acyl-COA-binding protein; acyl-coenzyme A binding	2e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-26
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-26
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-27
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-22
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-16
2rfa_A	232	Transient receptor potential cation channel subfa	2e-26
2rfa_A	232	Transient receptor potential cation channel subfa	5e-24
2rfa_A	232	Transient receptor potential cation channel subfa	6e-23
2rfa_A	232	Transient receptor potential cation channel subfa	1e-22
2rfa_A	232	Transient receptor potential cation channel subfa	4e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-25
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-25
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-25
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-25
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-13
2etb_A	256	Transient receptor potential cation channel subfam	6e-21
2etb_A	256	Transient receptor potential cation channel subfam	5e-18
2etb_A	256	Transient receptor potential cation channel subfam	2e-16
2etb_A	256	Transient receptor potential cation channel subfam	5e-16
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
2pnn_A	273	Transient receptor potential cation channel subfa	7e-21
2pnn_A	273	Transient receptor potential cation channel subfa	1e-18
2pnn_A	273	Transient receptor potential cation channel subfa	2e-16
2pnn_A	273	Transient receptor potential cation channel subfa	2e-14
2pnn_A	273	Transient receptor potential cation channel subfa	2e-11
2pnn_A	273	Transient receptor potential cation channel subfa	3e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-16
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-05

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  114 bits (287), Expect = 2e-31
 Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
                 + GD+D       +  G  VN     GR PLH+A D G L I E L+ K AD+N
Sbjct: 10  EFMWALKNGDLDEVKDY--VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           A D    TPL  AV     +  + L+ + AD  +K  DG +    
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 98.6 bits (247), Expect = 1e-25
 Identities = 25/75 (33%), Positives = 35/75 (46%)

Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN 331
            S       WA+  G L+  +  V+K  DVN     G+ PLHYA  C +  I +FL+ + 
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 332 ADIGMKDNDGNSPCH 346
           ADI   D    +P  
Sbjct: 64  ADINAPDKHHITPLL 78

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 81.7 bits (203), Expect = 2e-19
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA 315
           +  G  +N  D     PL  AV  GH++  +LL+SK AD   K  +G T     
Sbjct: 60  LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 49.7 bits (120), Expect = 6e-08
 Identities = 6/44 (13%), Positives = 12/44 (27%)

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
              +       +A+        +  V +  D+      G  P H
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLH 45

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  120 bits (303), Expect = 3e-31
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 239 NDLKMDAIHAFAREGDMDNLLKC-IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
            + K D +   AR G+ + L+       V+ +  D     PLH A     + I +LL+  
Sbjct: 21  GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80

Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            ADV+AKD  G  PLH A       + + L+K  A +   D    +P H 
Sbjct: 81  GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE 130

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (294), Expect = 4e-30
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 245 AIHAFAREGDMDN-----LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
           A+H               LL  +  G +VN ++ +   PLH A +R H ++ E+L    A
Sbjct: 214 ALHCAVASLHPKRKQVAELL--LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            +NA D+ GQT LH A +       + L+   +D  +    G +   +
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (292), Expect = 1e-29
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A    +    LL  +++G  V+ +D  G  PLH A   GH  ++ELL+   A VN
Sbjct: 61  PLHLAAGYNRVRIVQLL--LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN 118

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           A D    TPLH A   +R  +   L+   AD  + +  G S   +
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  112 bits (282), Expect = 2e-28
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN---ISELLVS 296
           + K  ++   ARE D+  + K +   +    +       LH AV   H     ++ELL+ 
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235

Query: 297 KNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           K A+VN K+ +  TPLH A       + + L K  A +   D+ G +  H
Sbjct: 236 KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  101 bits (253), Expect = 3e-24
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHL-NISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
            +      L     +  L  A   G+   +  LL   N + +A D    TPLH A   +R
Sbjct: 11  ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR 70

Query: 321 EAIAQFLVKQNADIGMKDNDGNSPCHV 347
             I Q L++  AD+  KD  G  P H 
Sbjct: 71  VRIVQLLLQHGADVHAKDKGGLVPLHN 97

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.5 bits (249), Expect = 1e-23
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 9/99 (9%)

Query: 245 AIHAFAREG--DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A     D+  +L   ++G  +N  DS G+  LH A   GHL    LL+S  +D +
Sbjct: 250 PLHVAAERAHNDVMEVL--HKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
               +G T              Q ++ ++  +   D D 
Sbjct: 308 IISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 97.2 bits (243), Expect = 5e-23
 Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 25/126 (19%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H     G  +   LL  +++G  VN  D     PLH A  +  + +  LL+S  AD  
Sbjct: 94  PLHNACSYGHYEVTELL--LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVK---------------------QNADIGMKDNDG 341
             +  G++ +  A   +      +  K                            +    
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211

Query: 342 NSPCHV 347
            +  H 
Sbjct: 212 ETALHC 217

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 87.9 bits (219), Expect = 1e-19
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 28/129 (21%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGH--------------- 287
            +H  A +  ++  +LL  + +G    L +  G++ +  A                    
Sbjct: 127 PLHEAASKNRVEVCSLL--LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184

Query: 288 ------LNISELLVSKNADVNAKDNEGQTPLHYAVVC---DREAIAQFLVKQNADIGMKD 338
                 L   +  ++       +    +T LH AV      R+ +A+ L+++ A++  K+
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244

Query: 339 NDGNSPCHV 347
            D  +P HV
Sbjct: 245 KDFMTPLHV 253

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 66.0 bits (162), Expect = 3e-12
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 1/60 (1%)

Query: 289 NISELLVSKNADVNAKDNEGQTPLHYAVV-CDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             +  L   +A         +  L  A    + E +   L   N +    D   ++P H+
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.0 bits (149), Expect = 1e-10
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 11/73 (15%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A+H  A  G +    LL  +  G   ++   +G        +       + ++S++  + 
Sbjct: 283 ALHRAALAGHLQTCRLL--LSYGSDPSIISLQGFTAAQMGNE-----AVQQILSESTPMR 335

Query: 303 AKDNEGQTPLHYA 315
             D +    L  A
Sbjct: 336 TSDVDY--RLLEA 346

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  114 bits (287), Expect = 3e-31
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  + +GD+     L  ++NG   N++D  G  PLH A + GHL + ELL+   A VN
Sbjct: 13  LLHIASIKGDIPSVEYL--LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
               +  +PLH A       I + L+   A     +  G  P   
Sbjct: 71  TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 99.4 bits (249), Expect = 1e-25
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 265 GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIA 324
           G+     +  G   LH A  +G +   E L+   +D N KD+ G TPLH A       + 
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 325 QFLVKQNADIGMKDNDGNSPCH 346
           + L++  A +       +SP H
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLH 81

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 89.8 bits (224), Expect = 4e-22
 Identities = 19/72 (26%), Positives = 34/72 (47%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +++   VN    +  +PLH A   GH++I +LL+S  A  NA +  G  P+ Y      +
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK 122

Query: 322 AIAQFLVKQNAD 333
           ++     K  + 
Sbjct: 123 SLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.5 bits (122), Expect = 5e-08
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA 303
           +  G S N  +  G  P+ +  D    ++  L   KN   +A
Sbjct: 96  LSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE-KNESSSA 136

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  115 bits (290), Expect = 3e-31
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           ++H  A +G+M        IE    +N  D EG  PL WA   G + + E L+   AD  
Sbjct: 6   SVHQLAAQGEMLYLATR--IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
                 ++ L  A       I + L+    D+   D +G +P   
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  113 bits (286), Expect = 1e-30
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   A  G +     L  ++NG    L      + L  A  +G+ +I ++L+    DVN
Sbjct: 39  PLMWAAAHGQIAVVEFL--LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 96

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             D  G TPL YAV  +     + L++  AD  ++ + G +   +
Sbjct: 97  EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  106 bits (268), Expect = 6e-28
 Identities = 18/79 (22%), Positives = 33/79 (41%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           ++ GV VN  D  G  PL +AV   H+   ++L+   AD   + + G   +  AV     
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148

Query: 322 AIAQFLVKQNADIGMKDND 340
           ++ Q +      +     +
Sbjct: 149 SVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 95.9 bits (240), Expect = 5e-24
 Identities = 16/73 (21%), Positives = 30/73 (41%)

Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
               +H    +G +      + +   +N  D EG TPL +A    + A+ +FL++  AD 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 335 GMKDNDGNSPCHV 347
            +      S   +
Sbjct: 63  QLLGKGRESALSL 75

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  115 bits (291), Expect = 4e-31
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 243 MDAIHAFAREGDMD--NLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
           MD I    REG+     L   ++N    +N  D  G +PLHWA   G   + E+L+ + A
Sbjct: 6   MDDIFTQCREGNAVAVRLW--LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            +N  +    TPLH A       I Q L++  ADI   +  GN P H 
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHY 111

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  111 bits (281), Expect = 7e-30
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H   REG      +L  I  G  +N+ +     PLH A   GH +I + L+   AD+N
Sbjct: 42  PLHWACREGRSAVVEML--IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           A +  G  PLHYA    ++ +A+ LV   A + + +  G  P   
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  101 bits (254), Expect = 6e-26
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A  G  D    L  ++    +N  +  G  PLH+A   G   ++E LV+  A V+
Sbjct: 75  PLHLAASHGHRDIVQKL--LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNS 343
             +  G+ P+  A    RE + +   K   ++         
Sbjct: 133 ICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 173

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 93.7 bits (234), Expect = 5e-23
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNA-DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ 330
             E    +      G+     L +     D+N  D+ G +PLH+A    R A+ + L+ +
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 331 NADIGMKDNDGNSPCHV 347
            A I + +   ++P H+
Sbjct: 62  GARINVMNRGDDTPLHL 78

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  116 bits (293), Expect = 4e-31
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK-NADVNA 303
            +H  A+ G++  L +C++N V VN  D  G   L+WA   GH +I E+L ++ N ++N 
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135

Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           ++  G T LH A       I Q L+ + A   +++ +      +
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  101 bits (255), Expect = 1e-25
 Identities = 14/85 (16%), Positives = 36/85 (42%)

Query: 263 ENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREA 322
           +  + +N ++  G   LH A  +G+ +I +LL++K A  + ++ E +     A      +
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACAS 187

Query: 323 IAQFLVKQNADIGMKDNDGNSPCHV 347
           + +     +A   + + +       
Sbjct: 188 LLKKKQGTDAVRTLSNAEDYLDDED 212

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 99.2 bits (248), Expect = 1e-24
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
            D+          +G        +     V  +      PLH A  RG+L+     +   
Sbjct: 42  TDMSDTNWWKGTSKGRTG-----LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR 96

Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ-NADIGMKDNDGNSPCHV 347
             VN  D  G T L++A     + I + L  Q N ++  ++  G++  H 
Sbjct: 97  VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 90.8 bits (226), Expect = 1e-21
 Identities = 8/103 (7%), Positives = 23/103 (22%), Gaps = 5/103 (4%)

Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
            +       +     +       +                +G        +  +  V  +
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVAEQ 69

Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
                 PLH A      +  +  +     +   D  G++  + 
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYW 112

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 77.3 bits (191), Expect = 9e-17
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A+HA A +G  D   LL  +  G   +LR+ E +     A +    ++ +     +A   
Sbjct: 143 ALHAAAWKGYADIVQLL--LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200

Query: 303 AKDNEGQTPLHYA 315
             + E       +
Sbjct: 201 LSNAEDYLDDEDS 213

>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Length = 106

 Score =  111 bits (279), Expect = 1e-30
 Identities = 31/101 (30%), Positives = 42/101 (41%)

Query: 109 ESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTAR 168
              +  + F AA + +       S + S +  L+ Y+ YK AT GPC  P+P       R
Sbjct: 4   PEPDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGR 63

Query: 169 AKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSK 209
            KW AW  LG M  EEAM  YI  +  +         L   
Sbjct: 64  YKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEV 104

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  112 bits (282), Expect = 1e-30
 Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  AR G ++   LL  +E G  VN +D  GR PLH A   GHL + +LL+   ADVN
Sbjct: 5   PLHLAARNGHLEVVKLL--LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           AKD  G+TPLH A       + + L++  AD+  KD +G +P H+
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 99.0 bits (248), Expect = 1e-25
 Identities = 32/72 (44%), Positives = 43/72 (59%)

Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
           GR PLH A   GHL + +LL+   ADVNAKD  G+TPLH A       + + L++  AD+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 335 GMKDNDGNSPCH 346
             KD +G +P H
Sbjct: 62  NAKDKNGRTPLH 73

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 92.8 bits (232), Expect = 2e-23
 Identities = 31/71 (43%), Positives = 41/71 (57%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +E G  VN +D  GR PLH A   GHL + +LL+   ADVNAKD  G+TPLH A      
Sbjct: 55  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114

Query: 322 AIAQFLVKQNA 332
            + + L++  A
Sbjct: 115 EVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.8 bits (110), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           G+TPLH A       + + L++  AD+  KD +G +P H+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 41

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  112 bits (284), Expect = 1e-30
 Identities = 30/85 (35%), Positives = 43/85 (50%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +  GVS + R    R PLH A   GH NI E+L+   ADVNAKD    T LH+A   + +
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 322 AIAQFLVKQNADIGMKDNDGNSPCH 346
            + + L+K  AD+  +     +   
Sbjct: 114 EVVELLIKYGADVHTQSKFCKTAFD 138

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  109 bits (275), Expect = 3e-29
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   AR G  D   +L  + NG      D  G +PLH A   GH + +E+L+      +
Sbjct: 5   KLLEAARAGQDDEVRIL--MANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           A+    +TPLH A       I + L+K  AD+  KD    +  H
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH 105

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 91.7 bits (229), Expect = 1e-22
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 245 AIHAFAREG--DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A EG  ++  +L  +++G  VN +D      LHWA +  H  + ELL+   ADV+
Sbjct: 70  PLHMAASEGHANIVEVL--LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFL 327
            +    +T    ++    E +A+ L
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 87.1 bits (217), Expect = 6e-21
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD 333
           +    L  A   G  +   +L++  A     D  G +PLH A      +  + L++    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 334 IGMKDNDGNSPCHV 347
              +     +P H+
Sbjct: 60  RDARTKVDRTPLHM 73

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  112 bits (282), Expect = 2e-30
 Identities = 43/112 (38%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 238 GNDLKMDAIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLV 295
           G+DL    +   AR G  D   +L  + NG  VN +D  G  PL+ A   GHL I E+L+
Sbjct: 11  GSDLG-KKLLEAARAGQDDEVRIL--MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL 67

Query: 296 SKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
              ADVNA D  G TPLH A       IA+ L+K  AD+  +D  G +   +
Sbjct: 68  KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 91.3 bits (228), Expect = 1e-22
 Identities = 29/70 (41%), Positives = 41/70 (58%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           ++NG  VN  D+ G  PLH A   GHL I+E+L+   ADVNA+D  G+T    ++    E
Sbjct: 67  LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126

Query: 322 AIAQFLVKQN 331
            +A+ L K N
Sbjct: 127 DLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 50.8 bits (123), Expect = 4e-08
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 297 KNADVNAKD-NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           + +  +    ++    L  A    ++   + L+   AD+  KD  G +P +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLY 52

>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Length = 119

 Score =  111 bits (279), Expect = 2e-30
 Identities = 30/107 (28%), Positives = 46/107 (42%)

Query: 95  SDVDSDGDDDWEGVESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGP 154
                           +  +  F AA   + +     S + +N++ L+ Y+ YK ATEGP
Sbjct: 6   HHSSGVDLGTENLYFQSMHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGP 65

Query: 155 CSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWA 201
           C   +P       R KW AW  LG M  EEAM  Y++ + ++  T  
Sbjct: 66  CKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMP 112

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  113 bits (285), Expect = 2e-30
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   +  G+++    L  +E G   ++   E  + L  A   G+ +I  LL+ ++ D+N
Sbjct: 39  PLIWASAFGEIETVRFL--LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             D  G TPL YAV  +     + L+ + AD+  + + G +P  +
Sbjct: 97  IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  110 bits (279), Expect = 1e-29
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 1/104 (0%)

Query: 245 AIHAFAREGDMDNLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA 303
           +IH  A +G++D L + +  G   VN  D  G  PL WA   G +     L+   AD + 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
              E ++ L  A       I   L++++ DI + D +G +P   
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY 108

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  108 bits (272), Expect = 1e-28
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A+   +  G  D   LL  +E  V +N+ D  G  PL +AV   H+   E L+++ AD+ 
Sbjct: 72  ALSLASTGGYTDIVGLL--LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
            + + G TP+  AV      + Q +      +   +     P
Sbjct: 130 TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 90.6 bits (226), Expect = 5e-22
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 275 GRAPLHWAVDRGHLNISELLVSKNAD-VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD 333
               +H    +G L+  +  + K  + VN  D  G TPL +A         +FL++  AD
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 334 IGMKDNDGNSPCHV 347
             +   +  S   +
Sbjct: 62  PHILAKERESALSL 75

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  115 bits (290), Expect = 2e-30
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREG--DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   AR     M   L  I +   VN  D  G++ LHWA    +++ + +L+   A+ +
Sbjct: 127 PLILAARLAVEGMLEDL--INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            ++N  +TPL  A        A+ L+   A+  + D+    P  +
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  110 bits (277), Expect = 2e-28
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
            +HA           +L  I N    ++ R  +G  PL  A       + E L++ +ADV
Sbjct: 93  PLHAAVSADAQGVFQIL--IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           NA D+ G++ LH+A   +    A  L+K  A+  M++N   +P  
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  102 bits (256), Expect = 2e-25
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 262 IENGVSV-NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
           I  G S+ N  D  G   LH A      + ++ L+  +AD N +DN G+TPLH AV  D 
Sbjct: 43  IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102

Query: 321 EAIAQFLVKQNA-DIGMKDNDGNSPCHV 347
           + + Q L++  A D+  + +DG +P  +
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLIL 130

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 96.8 bits (242), Expect = 2e-23
 Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A+H  A   ++D   +L  ++NG + +++++    PL  A   G    +++L+   A+ +
Sbjct: 160 ALHWAAAVNNVDAAVVL--LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 217

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
             D+  + P   A       I + L  ++   
Sbjct: 218 ITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 89.1 bits (222), Expect = 1e-20
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 14/96 (14%)

Query: 266 VSVNLRDSEGRAPLHWAVDRG-------------HLNISELLVSKNADV-NAKDNEGQTP 311
           + VN+R  +G  PL  A   G                +    + + A + N  D  G+T 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           LH A    R   A+ L++ +AD  ++DN G +P H 
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 96

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   AREG  +   +L  +++  + ++ D   R P   A +R H +I  LL  ++   +
Sbjct: 193 PLFLAAREGSYETAKVL--LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

Query: 303 AK 304
             
Sbjct: 251 HH 252

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  112 bits (284), Expect = 2e-30
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 5/117 (4%)

Query: 233 YEEESGNDLKMDAIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNI 290
           +    G+DL    +   AR G  D   +L  + NG  VN  D+ G  PLH A   GHL I
Sbjct: 6   HHHHHGSDLGK-KLLEAARAGRDDEVRIL--MANGADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 291 SELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            E+L+   ADVNA D+ G TPL  A +     I + L+K  AD+   D +G++P H+
Sbjct: 63  VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL 119

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  110 bits (279), Expect = 1e-29
 Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A  G ++   +L  ++NG  VN  D  G  PL  A   GHL I E+L+   ADVN
Sbjct: 50  PLHLAAFNGHLEIVEVL--LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           A D EG TPLH A +     I + L+K  AD+  +D  G +   +
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 92.0 bits (230), Expect = 1e-22
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   A  G ++   +L  ++NG  VN  D EG  PLH A   GHL I E+L+   ADVN
Sbjct: 83  PLRLAALFGHLEIVEVL--LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQN 331
           A+D  G+T    ++    E +A+ L K N
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  114 bits (288), Expect = 2e-30
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   A  G+++       ++     +  + EG   LH A+   + +I + L++  A+VN
Sbjct: 24  LLLDAALTGELEVVQQA--VKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD-NDGNSPCHVCES 350
           + D+ G TPLH A  C+   I   LV+  A I     +DG +    C+ 
Sbjct: 82  SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDP 130

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 99.6 bits (249), Expect = 8e-25
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 262 IENGVSVNLRDSE---GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC 318
           +    S              L  A   G L + +  V +  D +  + EG T LH A+  
Sbjct: 5   LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG 64

Query: 319 DREAIAQFLVKQNADIGMKDNDGNSPCH 346
              +I  FL+   A++   D+ G +P H
Sbjct: 65  ANYSIVDFLITAGANVNSPDSHGWTPLH 92

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 80.0 bits (198), Expect = 1e-17
 Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 8/108 (7%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRD-SEGRAPLHWA--VDRGHLNISELLVSKNA 299
            +H  A   D      L  +++G ++     S+G            G+ + +  L     
Sbjct: 90  PLHCAASCNDTVICMAL--VQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            +   ++     L      +      F   ++  +  +D    +    
Sbjct: 148 SMGLMNSGAVYALWDYS-AEFGDELSFREGESVTVLRRDGPEETDWWW 194

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 6/102 (5%)

Query: 248 AFAREG--DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
              REG  D    L   +   S+ L +S     L         +       ++  V  +D
Sbjct: 129 DPYREGYADCATYL--ADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVLRRD 185

Query: 306 NEGQTPLHYAVVCDREAI-AQFLVKQNADIGMKDNDGNSPCH 346
              +T   +A +  +E    +        +  + +      H
Sbjct: 186 GPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 3/60 (5%)

Query: 292 ELLVSKNADVNAKDNE---GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
             ++ K                 L  A +     + Q  VK+  D    + +G +  H  
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score =  111 bits (278), Expect = 2e-30
 Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 4/110 (3%)

Query: 99  SDGDDDWEGVESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAP 158
           S G             + F  +   V        +   N+V+L+LYALYK ATEGPC+ P
Sbjct: 2   SSGSSGMNRTAMRASQKDFENSMNQVKLL----KKDPGNEVKLKLYALYKQATEGPCNMP 57

Query: 159 QPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKS 208
           +P    +  +AKW AW  LG++P E A Q Y+D+V+ L P+  + S ++ 
Sbjct: 58  KPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEP 107

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  116 bits (292), Expect = 3e-30
 Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            + A    GD +    L  +E G  +N  + +G   LH A    ++++ + LV   A++N
Sbjct: 44  FLAA-CSSGDTEEVLRL--LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD 351
             DNEG  PLH A  C    IA++L+ Q A +G  +++G++P  + E +
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE 149

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (282), Expect = 9e-29
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 235 EESGNDLKMDAIHAFAREG--DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISE 292
              G D++  A     R    D    L      ++       G   LH A  +G+  + +
Sbjct: 160 NRQGVDIE-AARKEEERIMLRDARQWL--NSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD 351
           LL+    DVN KD +G TPLH A    +E   + LV+   D+   +  G +   V + D
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  101 bits (255), Expect = 6e-25
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 12/118 (10%)

Query: 242 KMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
           +          G   +L   +       ++  +G      A   G       L+ + AD+
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGADI 66

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAA 359
           N  + +G T LH A + D   + +FLV+  A+I   DN+G  P           LHAA
Sbjct: 67  NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP-----------LHAA 113

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 99.5 bits (249), Expect = 4e-24
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A+H    + ++D    L  +ENG ++N  D+EG  PLH A   G+L+I+E L+S+ A V 
Sbjct: 76  ALHQACIDDNVDMVKFL--VENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLV-KQNADIGMKDNDGNSPCH 346
           A ++EG TPL  A     E + Q  V +Q  DI     +      
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 98.7 bits (247), Expect = 7e-24
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A+H  A +G  +   LL  I+    VN++D +G  PLH A   G      +LV    D+ 
Sbjct: 202 ALHVAAAKGYTEVLKLL--IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGN 342
           A +  GQT    A       + +   KQN     K    +
Sbjct: 260 AVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 91.4 bits (228), Expect = 3e-21
 Identities = 32/144 (22%), Positives = 46/144 (31%), Gaps = 42/144 (29%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHW--------------------- 281
            +HA A  G +D    L  I  G  V   +SEG  PL                       
Sbjct: 109 PLHAAASCGYLDIAEYL--ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166

Query: 282 ------AVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIG 335
                        +  + L S + +       G T LH A       + + L++   D+ 
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226

Query: 336 MKDNDGNSPCHVCESDWPWMLHAA 359
           +KD DG +P           LHAA
Sbjct: 227 IKDYDGWTP-----------LHAA 239

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 86.0 bits (214), Expect = 3e-19
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 1/81 (1%)

Query: 268 VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFL 327
           + + D++ +         G     E  V K      K ++G      A           L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 328 VKQNADIGMKDNDGNSPCHVC 348
           +++ ADI   + DG +  H  
Sbjct: 60  LERGADINYANVDGLTALHQA 80

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.5 bits (127), Expect = 6e-08
 Identities = 8/50 (16%), Positives = 15/50 (30%)

Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES 350
           +   D + +           E   +  V +     +K +DG      C S
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSS 50

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  114 bits (287), Expect = 4e-30
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   AR         L  I +   VN  D  G++ LHWA    +++ + +L+   A+ +
Sbjct: 95  PLILAARLAVEGMLEDL--INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 152

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            ++N  +TPL  A        A+ L+   A+  + D+    P  +
Sbjct: 153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  108 bits (272), Expect = 4e-28
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
            +HA           +L  I N    ++ R  +G  PL  A       + E L++ +ADV
Sbjct: 61  PLHAAVSADAQGVFQIL--IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           NA D+ G++ LH+A   +    A  L+K  A+  M++N   +P  +
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  103 bits (260), Expect = 3e-26
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 262 IENGVSV-NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
           I  G S+ N  D  G   LH A      + ++ L+  +AD N +DN G+TPLH AV  D 
Sbjct: 11  IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 70

Query: 321 EAIAQFLVKQNA-DIGMKDNDGNSPCHV 347
           + + Q L++  A D+  + +DG +P  +
Sbjct: 71  QGVFQILIRNRATDLDARMHDGTTPLIL 98

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 98.3 bits (246), Expect = 3e-24
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A+H  A   ++D   +L  ++NG + +++++    PL  A   G    +++L+   A+ +
Sbjct: 128 ALHWAAAVNNVDAAVVL--LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
             D+  + P   A       I + L + N   
Sbjct: 186 ITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 286 GHLNISELLVSKNADV-NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
               +    + + A + N  D  G+T LH A    R   A+ L++ +AD  ++DN G +P
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 345 CHV 347
            H 
Sbjct: 62  LHA 64

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 57.4 bits (140), Expect = 8e-10
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   AREG  +   +L  +++  + ++ D   R P   A +R H +I  LL   N   +
Sbjct: 161 PLFLAAREGSYETAKVL--LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

Query: 303 AKDN 306
            + +
Sbjct: 219 PQLH 222

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  112 bits (282), Expect = 4e-30
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +++G  V+ +D  G  PLH A   GH  ++ELLV   A VN  D    TPLH A    + 
Sbjct: 62  LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121

Query: 322 AIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAK 360
            I + L++  AD   K+ DGN+P           L   K
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTP-----------LDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  107 bits (269), Expect = 3e-28
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   A+ GD++    L C    V+    +     PLH+A     +++ E L+   ADV+
Sbjct: 11  QLLEAAKAGDVETVKKL-CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           AKD  G  PLH A       +A+ LVK  A + + D    +P H
Sbjct: 70  AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 113

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 93.6 bits (234), Expect = 3e-23
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKN-ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ 330
           +SE    L  A   G +   + L +    +    +    TPLH+A   +R ++ ++L++ 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 331 NADIGMKDNDGNSPCHV 347
            AD+  KD  G  P H 
Sbjct: 65  GADVHAKDKGGLVPLHN 81

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFLV-KQNADIGMKDNDGNSPCH 346
           A  N   +E    L  A         + L   Q+ +    +   ++P H
Sbjct: 2   AMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH 47

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
            +H  A +G  +   LL  +++G     ++ +G  PL      G  +I +LL    A
Sbjct: 111 PLHEAAAKGKYEICKLL--LQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  114 bits (287), Expect = 5e-30
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +        +D   LL  +  G  +N+RD+E    LHWA   G ++I+E+L++   D++
Sbjct: 114 PMIWATEYKHVDLVKLL--LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           A +  G +PLH A   +R       + +++D+ +K+ +G +P   
Sbjct: 172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  107 bits (270), Expect = 2e-27
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 262 IENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
           + NG + VN +D  G  P+ WA +  H+++ +LL+SK +D+N +DNE    LH+A     
Sbjct: 97  LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156

Query: 321 EAIAQFLVKQNADIGMKDNDGNSPCHV 347
             IA+ L+    D+   +  G+SP H+
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHI 183

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  106 bits (268), Expect = 3e-27
 Identities = 22/82 (26%), Positives = 44/82 (53%)

Query: 266 VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQ 325
           ++  +     R+PLH A + GH++I  +LV   A+++    + +TPL  A   +     +
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 326 FLVKQNADIGMKDNDGNSPCHV 347
           +L+K  A +  KD +G++  H+
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHL 83

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  106 bits (268), Expect = 3e-27
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +HA A  G +D  ++L  ++ G +++    + R PL  A +  HL   + L+   A V+
Sbjct: 14  PLHAAAEAGHVDICHML--VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNA-DIGMKDNDGNSPCHV 347
            KD EG T LH A       + Q+L+     D+  +D+ G +P   
Sbjct: 72  PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 96.7 bits (242), Expect = 1e-23
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A  G +D   +L  +     ++  +  G +PLH A      +   L +S+++DV 
Sbjct: 147 CLHWAAFSGCVDIAEIL--LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT 204

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIG 335
            K+ EG+TPL  A +  +   A  + K   D  
Sbjct: 205 LKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 67.1 bits (165), Expect = 5e-13
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           + +   +    ++PLH A       I   LV+  A+I     D  +P   
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLME 50

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  114 bits (287), Expect = 6e-30
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 245 AIHAFAREG--DMDNLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNADV 301
           A+H        +   LL  +E G  ++  D + GR+PL  AV+   L++ +LL+   A+V
Sbjct: 119 ALHVAVNTECQETVQLL--LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           NA+   G + LH A       + + LV+  AD  +K+   ++P  V
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  105 bits (265), Expect = 9e-27
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 245 AIHAFAREGDMD--NLLKCIENG----VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
           A H             L  +++     + +  R+ +G   LH AV+       +LL+ + 
Sbjct: 82  AAHLACEHRSPTCLRAL--LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139

Query: 299 ADVNAKD-NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           AD++A D   G++PL +AV  +  ++ Q L++  A++  +   G+S  H 
Sbjct: 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 189

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  104 bits (262), Expect = 2e-26
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 245 AIHAFAREGDMD---NLLK-CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD 300
            +H    +G++     L+    + G  +++ ++  + PLH AV     ++  LLV+  A 
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71

Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNA----DIGMKDNDGNSPCHV 347
             A D  GQT  H A         + L+   A    D+  ++ DG +  HV
Sbjct: 72  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  101 bits (254), Expect = 3e-25
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 268 VNLRDSEGRAPLHWAVDRGHLNISELLVS----KNADVNAKDNEGQTPLHYAVVCDREAI 323
               D +G  PLH AV +G+L     LV+       +++  +N  QTPLH AV+    ++
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 324 AQFLVKQNADIGMKDNDGNSPCHV 347
            + LV   A     D  G +  H+
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHL 85

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 92.9 bits (232), Expect = 4e-22
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +++G +VN +   G + LH A  RG L +   LV   AD + K+    TPL  A      
Sbjct: 170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 229

Query: 322 AIAQFLVKQNA 332
            I +    + A
Sbjct: 230 DILRGKATRPA 240

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  109 bits (275), Expect = 1e-29
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A+ G  +    L  +  G  VN R  +G  PLH A   GH  I +LL++K ADVN
Sbjct: 12  PLHNAAKNGHAEEVKKL--LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           A+  +G TP H A       I + L  + AD+  +    +   H
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  100 bits (251), Expect = 4e-26
 Identities = 30/79 (37%), Positives = 42/79 (53%)

Query: 269 NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV 328
                +G  PLH A   GH    + L+SK ADVNA+  +G TPLH A       I + L+
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 329 KQNADIGMKDNDGNSPCHV 347
            + AD+  +  DGN+P H+
Sbjct: 63  AKGADVNARSKDGNTPEHL 81

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 81.7 bits (203), Expect = 2e-19
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY 314
           +  G  VN R  +G  P H A   GH  I +LL +K ADVNA+        H+
Sbjct: 62  LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  110 bits (279), Expect = 1e-29
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 6/106 (5%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A+    + G+ +    L  +  G + +L+D  G A +H A   G L+  + L+   ADVN
Sbjct: 41  ALQV-MKLGNPEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNA-DIGMKDNDGNSPCHV 347
            +DNEG  PLH A       + +FLVK  A ++G +++ G++ C +
Sbjct: 98  IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  107 bits (271), Expect = 2e-28
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            + + A  GD++    L  ++N V+VN ++  GR  L      G+  I+  L+ + A+ +
Sbjct: 8   ELASAAARGDLEQLTSL--LQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD 64

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
            KD  G   +H A         Q L++  AD+ ++DN+GN P H
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 91.7 bits (229), Expect = 1e-22
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA-DV 301
            IH  AR G +D    L  +E    VN+ D+EG  PLH A   GHL + E LV   A +V
Sbjct: 73  VIHDAARAGFLDTLQTL--LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNA 332
             ++++G T    A +  R  +   +    A
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 91.7 bits (229), Expect = 2e-22
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD 333
                L  A  RG L     L+  N +VNA++  G+T L    + + E IA+ L+ + A+
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPE-IARRLLLRGAN 62

Query: 334 IGMKDNDGNSPCH 346
             +KD  G +  H
Sbjct: 63  PDLKDRTGFAVIH 75

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.5 bits (117), Expect = 3e-07
 Identities = 7/56 (12%), Positives = 14/56 (25%), Gaps = 11/56 (19%)

Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAAK 360
                  L  A           L++ N ++  ++  G +            L   K
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA-----------LQVMK 46

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  111 bits (281), Expect = 1e-29
 Identities = 28/85 (32%), Positives = 50/85 (58%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +EN   +  +D EG   L WAV    L I+E L+SK ++VN KD  G+TPL ++++    
Sbjct: 55  VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYS 114

Query: 322 AIAQFLVKQNADIGMKDNDGNSPCH 346
            ++ FL++  A++  ++ +G +P  
Sbjct: 115 EMSYFLLEHGANVNDRNLEGETPLI 139

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  111 bits (280), Expect = 1e-29
 Identities = 28/85 (32%), Positives = 46/85 (54%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +  G +VN +D  G+ PL W++  G+  +S  L+   A+VN ++ EG+TPL  A    R 
Sbjct: 88  LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147

Query: 322 AIAQFLVKQNADIGMKDNDGNSPCH 346
            I + L++  ADI  +D  G +   
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEA 172

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  104 bits (262), Expect = 6e-27
 Identities = 28/81 (34%), Positives = 39/81 (48%)

Query: 266 VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQ 325
              N RDS  R PL  A   G  N  + LV     +  KD EG T L +AV  +R  IA+
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAE 85

Query: 326 FLVKQNADIGMKDNDGNSPCH 346
            L+ + +++  KD  G +P  
Sbjct: 86  KLLSKGSNVNTKDFSGKTPLM 106

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 21/71 (29%), Positives = 35/71 (49%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +E+G +VN R+ EG  PL  A   G   I + L+   AD++A+D  G T    A +  R+
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180

Query: 322 AIAQFLVKQNA 332
            + +   +   
Sbjct: 181 EVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 71.3 bits (176), Expect = 6e-15
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN 331
           D  G        ++      + L       N +D+  +TPL  A +   E     LV+  
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 332 ADIGMKDNDGNSPCH 346
             +  KD +G++   
Sbjct: 59  DKLEDKDIEGSTALI 73

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  117 bits (295), Expect = 1e-29
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  AREG ++    L  +E   S      +G  PLH A   G + ++ELL+ ++A  N
Sbjct: 116 PLHIAAREGHVETVLAL--LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           A    G TPLH AV  +   I + L+ +         +G +P H+
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  116 bits (293), Expect = 2e-29
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A++  ++    L  ++ G S N    +G  PLH A   GH  +  LL+SK A+ N
Sbjct: 215 PLHIAAKQNQVEVARSL--LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             +  G TPLH         +A  L+K    +      G +P HV
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  116 bits (292), Expect = 3e-29
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A+EG  +   LL  +    + NL +  G  PLH     GH+ ++++L+     V+
Sbjct: 248 PLHLAAQEGHAEMVALL--LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           A    G TPLH A       + +FL++  AD+  K   G SP H
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (291), Expect = 4e-29
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  +  G +     L  ++ G S N+ + +   PLH A   GH  +++ L+   A VN
Sbjct: 17  PLHVASFMGHLPIVKNL--LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           AK  + QTPLH A       + + L++ NA+  +    G++P H+
Sbjct: 75  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 119

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (290), Expect = 5e-29
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A+EG +   ++L  I++GV V+     G  PLH A   G++ + + L+   ADVN
Sbjct: 281 PLHLVAQEGHVPVADVL--IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           AK   G +PLH A       I   L+K  A      +DG +P  +
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  114 bits (288), Expect = 1e-28
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  AR G  +   LL  +EN  + NL  + G  PLH A   GH+     L+ K A   
Sbjct: 83  PLHCAARIGHTNMVKLL--LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
               +G TPLH A    +  +A+ L++++A       +G +P HV
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV 185

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  113 bits (286), Expect = 2e-28
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  AR G  +    L  ++N   VN +  + + PLH A   GH N+ +LL+  NA+ N
Sbjct: 50  PLHMAARAGHTEVAKYL--LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
                G TPLH A           L+++ A        G +P HV
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV 152

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  111 bits (281), Expect = 1e-27
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H      ++D   LL  +  G S +     G  PLH A  +  + ++  L+      N
Sbjct: 182 PLHVAVHHNNLDIVKLL--LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           A+  +G TPLH A       +   L+ + A+  + +  G +P H+
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  111 bits (279), Expect = 2e-27
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A+ G +    LL  +E     N     G  PLH AV   +L+I +LL+ +    +
Sbjct: 149 PLHVAAKYGKVRVAELL--LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           +    G TPLH A   ++  +A+ L++       +   G +P H+
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 251

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  108 bits (273), Expect = 1e-26
 Identities = 26/84 (30%), Positives = 40/84 (47%)

Query: 264 NGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAI 323
            G+S       G  PLH A   GHL I + L+ + A  N  + + +TPLH A       +
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 324 AQFLVKQNADIGMKDNDGNSPCHV 347
           A++L++  A +  K  D  +P H 
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHC 86

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  105 bits (265), Expect = 2e-25
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  +  G++     L  +++   VN +   G +PLH A  +GH +I  LL+   A  N
Sbjct: 314 PLHVASHYGNIKLVKFL--LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFL---VKQNADIGMKDNDGNSPCHVCE 349
              ++G TPL  A      ++   L     + + + + D    S     +
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.9 bits (167), Expect = 9e-13
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 296 SKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           S           G TPLH A       I + L+++ A   + +    +P H+
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHM 53

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  110 bits (278), Expect = 1e-29
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 245 AIHAFAREGDMD---NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
            +   A  GD+     LL      V  +  +  G+  L   +  G   I+  L+ + A  
Sbjct: 5   RLSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP 61

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           N +D  G +P+H A         + LV+  AD+ + D  G  P H+
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL 107

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  109 bits (275), Expect = 3e-29
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           ++ G S N++D+ G +P+H A   G L+  ++LV   ADVN  D  G  P+H AV     
Sbjct: 55  LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114

Query: 322 AIAQFLVKQNADIGMKDNDGNSPCHV 347
           A+  FL    +D+  +D  G +P  +
Sbjct: 115 AVVSFLAA-ESDLHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 92.5 bits (231), Expect = 7e-23
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  AR G +D   +L  +E+G  VN+ D  G  P+H AV  GH  +   L ++ +D++
Sbjct: 71  PVHDAARTGFLDTLKVL--VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH 127

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQ 330
            +D  G TPL  A+    + +   L   
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQGH 155

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  113 bits (286), Expect = 2e-29
 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNADV 301
            +H      D +   LL   + G  +N  +   GR PLH AV+    ++ ELL+   AD 
Sbjct: 161 PLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            A+   G+TPL  A++     +A+ L    A       D  SPC  
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  111 bits (279), Expect = 2e-28
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 1/111 (0%)

Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
            +     A        + +   +  +  + +   + +G  PLH AV      +  LL   
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 298 NADVNAKD-NEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            AD+N  +   G+TPLH AV     ++ + L+K  AD   +   G +P   
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  101 bits (253), Expect = 7e-25
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 10/124 (8%)

Query: 245 AIHAFAREGDMD--NLLKCIENG---VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
           A+H           + L  +        ++L++  G+  LH A   G  +  E L +  A
Sbjct: 12  ALHLAVIHQHEPFLDFL--LGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV---CESDWPWML 356
            V   +  G T LH A        A  L++         +D           ++      
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 357 HAAK 360
             ++
Sbjct: 130 VDSQ 133

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 97.2 bits (243), Expect = 2e-23
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 268 VNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD---VNAKDNEGQTPLHYAVVCDREAIA 324
                 +G   LH AV   H    + L+  +A    ++ +++ GQT LH A +    +  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 325 QFLVKQNADIGMKDNDGNSPCHV 347
           + L    A + + +  G++  H+
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHL 84

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.9 bits (211), Expect = 5e-19
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV 316
           ++ G     R   GR PL  A+ R +  ++ LL +  A       +  +P   + 
Sbjct: 212 LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 262 IENGVSVNLRDSEGRAP--------------LHWAVDRGHLNISELLVSKNADVNAKDNE 307
           ++   S     S+                     +                  + A++ +
Sbjct: 98  LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157

Query: 308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKDND-GNSPCHV 347
           G TPLH AV+     + + L    AD+   +   G +P H+
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 4/52 (7%), Positives = 13/52 (25%), Gaps = 4/52 (7%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELL 294
            + +     +     LL    +G        +  +P   +      +  +  
Sbjct: 228 PLGSALLRPNPILARLL--RAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEG 277

>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Length = 96

 Score =  108 bits (270), Expect = 2e-29
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 109 ESTELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTAR 168
                 + F AA  +V+ +    +   SND +L  Y  YK AT G C+ P+P  L++  +
Sbjct: 6   HHHMSADDFDAAVKYVSNTT---TMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEK 62

Query: 169 AKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWA 201
            KW+AW  L  M  E A + Y+ ++  L P+W 
Sbjct: 63  YKWEAWNALRGMSTESAKEAYVKLLDTLAPSWR 95

>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Length = 89

 Score =  108 bits (270), Expect = 2e-29
 Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQ 172
           + ++F    +F+  +    +  + N+++L LY  YK +T G C+  +PSA K   R K++
Sbjct: 2   MAQVFEECVSFI--NGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYE 59

Query: 173 AWQKLGAMPPEEAMQKYIDIVTELYPTW 200
           AW+ +  +  E+A ++Y+DIV+E++P W
Sbjct: 60  AWKSVENLNREDAQKRYVDIVSEIFPYW 87

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  111 bits (279), Expect = 6e-29
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 239 NDLKMDAIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVS 296
           N L +  +   + EG+ D    +  I      +L + EG   LH AV  GH  I + LV 
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRI--IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91

Query: 297 KNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGN 342
              +VNA D++G TPLH A  C+   + +FLV+  A +        
Sbjct: 92  FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM 137

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  106 bits (266), Expect = 4e-27
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           ++    R       +    I +G+ V   +    A L  +   G  ++ + ++ +  D +
Sbjct: 8   SLPPGKRTNLRKTGSER--IAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS 64

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             ++EG T LH AV      I +FLV+   ++   D+DG +P H 
Sbjct: 65  LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC 109

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 83.8 bits (208), Expect = 6e-19
 Identities = 8/75 (10%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN 331
           +  G+  L               ++    V          L  + +     + Q ++ + 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEV 60

Query: 332 ADIGMKDNDGNSPCH 346
            D  + +++G +  H
Sbjct: 61  DDPSLPNDEGITALH 75

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 15/115 (13%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLR---DSEGRAPLHWAVDRGHLNISELLVSKNA 299
            +H  A   ++     L  +E+G +V      D +  A     ++ G+   S+ L     
Sbjct: 106 PLHCAASCNNVQVCKFL--VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPW 354
            +   +      L      + +   +  +K+   + +   +        E +W W
Sbjct: 164 KMGIMNKGVIYALWDY---EPQNDDELPMKEGDCMTIIHREDED-----EIEWWW 210

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 9/81 (11%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
                  EG       L        + + +      L     +      EL + +   + 
Sbjct: 142 DKCEEMEEGYTQCSQFL--YGVQEKMGIMNKGVIYALWDYEPQNDD---ELPMKEGDCMT 196

Query: 303 A--KDNEGQTPLHYAVVCDRE 321
              +++E +    +A + D+E
Sbjct: 197 IIHREDEDEIEWWWARLNDKE 217

>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score =  107 bits (268), Expect = 6e-29
 Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 110 STELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARA 169
           S+ L E+F  A A +        Q  S +  L LYA YK    G C+ P+PS      + 
Sbjct: 5   SSGLAELFEKAAAHLQGL----IQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQ 60

Query: 170 KWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAAS 217
           KW+AW+ LG   P +AMQ+YI +V +L P W      K  +     +S
Sbjct: 61  KWEAWKALGDSSPSQAMQEYIAVVKKLDPGWNPQIPEKKGKEASGPSS 108

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (278), Expect = 6e-29
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 2/104 (1%)

Query: 245 AIHAFAREGDMDNLLKC-IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA 303
             +  A  G +D L +  + +       D + R  LHWA   GH  I E L+     VN 
Sbjct: 10  ICNL-AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           KD+ G +PLH A     + I + L+ + A +   + +G +P H 
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY 112

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 90.7 bits (225), Expect = 2e-21
 Identities = 16/73 (21%), Positives = 31/73 (42%)

Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
                + A       + E +++  +     D + +T LH+A       I +FL++    +
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66

Query: 335 GMKDNDGNSPCHV 347
             KD+ G SP H+
Sbjct: 67  NDKDDAGWSPLHI 79

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 88.8 bits (220), Expect = 9e-21
 Identities = 31/112 (27%), Positives = 54/112 (48%)

Query: 236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLV 295
            + N      +H  A +   +  +  +E G + + +D      +H A  +G+L +  +L+
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

Query: 296 SKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
              A  N +D EG TPLH A   +R   A+FLV Q A I +++ +  +P  V
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 88.4 bits (219), Expect = 1e-20
 Identities = 27/104 (25%), Positives = 48/104 (46%)

Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
            +H  A  G  + +   +  G  VN  +  G  PLH+A  +    I+ +L+   A+ +AK
Sbjct: 76  PLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135

Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           D+   T +H A       +   L+   A   ++D +GN+P H+ 
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 86.8 bits (215), Expect = 4e-20
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A+H     G  +    L  ++ GV VN +D  G +PLH A   G   I + L+ K A VN
Sbjct: 43  ALHWACSAGHTEIVEFL--LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           A +  G TPLHYA   +R  IA  L++  A+   KD+   +  H 
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHR 145

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 23/119 (19%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 216 ASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEG 275
           A++ ++  +  +        ++ +     A+H  A +G++  +   +    S N++D+EG
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172

Query: 276 RAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
             PLH A D   +  ++ LV++ A +  ++ E +TPL  A       +    + +  + 
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 4/140 (2%)

Query: 165 MTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQE--DAASTDSKA 222
           +   A   A  + G  P   A  K    +  +     A    K          A+     
Sbjct: 93  LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152

Query: 223 PMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWA 282
            M  +   +       +      +H    E  ++     +  G S+ + + E + PL  A
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

Query: 283 VDRGHLNISELLVSKNADVN 302
             +G L +    +++  + +
Sbjct: 213 --KGGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 4/44 (9%), Positives = 12/44 (27%)

Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
                    + A     + + + ++   +     D D  +  H 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW 46

>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} Length = 106

 Score =  106 bits (267), Expect = 7e-29
 Identities = 28/98 (28%), Positives = 41/98 (41%)

Query: 110 STELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARA 169
           S      F  A   V +       K + D QL  Y  +K AT G  +  +P  +  T +A
Sbjct: 1   SHMSKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKA 60

Query: 170 KWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLK 207
           KW AW+ +     E A QKY++ + E+        S K
Sbjct: 61  KWDAWKSVEGTSKEVAYQKYVEKLLEILKKADTEESKK 98

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  110 bits (279), Expect = 8e-29
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 235 EESGNDLKMDAIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISE 292
           ++ G DL    +H   R+G +     L  ++ G   +L D EG + +H A   GH +I  
Sbjct: 69  DQLGGDLNSTPLHWATRQGHLSMVVQL--MKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126

Query: 293 LLVSKNADVNAKDNEGQTPLHYAVV-CDREAIAQFLVKQNADIGMKDN-DGNSPCHV 347
            L++K  DV+  D  G TPL +A          + L+  N  + + D    N+  H 
Sbjct: 127 YLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  110 bits (277), Expect = 1e-28
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            I    + G  +    L  +E G  V   D E    LHWA     +++ +  +SK A V+
Sbjct: 12  DIVKATQYGIYERCREL--VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69

Query: 303 AKDNE-GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
               +   TPLH+A      ++   L+K  AD  + D +G S  H+
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  108 bits (272), Expect = 7e-28
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGH-LNISELLVSKNADV 301
            IH  A+ G       L  I  G  V++ D  G  PL WA  R H ++ + LL++ N  V
Sbjct: 112 CIHLAAQFGHTSIVAYL--IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169

Query: 302 NAKDN-EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           N  D     T LH+AV+     +   L++  A++  ++  G S   +
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  108 bits (272), Expect = 8e-28
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNADV 301
            +H  A    +D       I  G  V+    +    PLHWA  +GHL++   L+   AD 
Sbjct: 45  LLHWAAINNRIDLVKYY--ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           +  D EG + +H A      +I  +L+ +  D+ M D +G +P   
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 148

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 99.0 bits (248), Expect = 2e-24
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 268 VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFL 327
           +   D      +  A   G       LV    DV   D E  T LH+A + +R  + ++ 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 328 VKQNADIGMKDND-GNSPCH 346
           + + A +     D  ++P H
Sbjct: 62  ISKGAIVDQLGGDLNSTPLH 81

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 95.6 bits (239), Expect = 4e-23
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 245 AIHAFAREGDMDNLLKC-IENGVSVNLRD-SEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   A      +  +  +   VSVNL D       LHWAV  G+  +  LL+   A+V+
Sbjct: 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD 338
           A++ +G++ L  A       +   L +     G  +
Sbjct: 205 AQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 58.6 bits (143), Expect = 4e-10
 Identities = 7/47 (14%), Positives = 15/47 (31%)

Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           +   D+     +  A         + LV+   D+   D +  +  H 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHW 48

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  111 bits (281), Expect = 9e-29
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 235 EESGNDLKMDAIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISE 292
                +     +H   +    D   LL  + +G    LR   G  P   A   G + + +
Sbjct: 32  NFQEEEGGWTPLHNAVQMSREDIVELL--LRHGADPVLRKKNGATPFLLAAIAGSVKLLK 89

Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDW 352
           L +SK ADVN  D  G T    A V  +    +FL K+ A++ ++         + +   
Sbjct: 90  LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149

Query: 353 -PWMLHAA 359
               L  A
Sbjct: 150 TA--LMDA 155

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  108 bits (272), Expect = 2e-27
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRA-PLHWAVDRGHLNISELLVSKNADV 301
            +    +  D+D    L  +E G +VN ++ EG   PLH AV     +I ELL+   AD 
Sbjct: 8   LLIKAVQNEDVDLVQQL--LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             +   G TP   A +     + +  + + AD+   D  G +    
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFME 111

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  100 bits (251), Expect = 2e-24
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 245 AIHAFAREGDMDNLLKC----IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK-NA 299
           A+       D  ++       +++G  VN+R   G+ PL  AV++ HL + + L+ + + 
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDN 339
           ++N  D++G+T L  AV    + IA+ L K+ A     D 
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 98.7 bits (247), Expect = 6e-24
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 245 AIHAFAREGDMDN---LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN----ISELLVSK 297
           A+   A +G ++    LL   E G  VN  D+ GR  L  A+     +    I+ LL+  
Sbjct: 151 ALMDAAEKGHVEVLKILLD--EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLV-KQNADIGMKDNDGNSPCHV 347
            ADVN +   G+TPL  AV      + Q L+ +++ +I   D+DG +   +
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 97.9 bits (245), Expect = 1e-23
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 263 ENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN-ADVNAKDNEGQTPLHYAVVC--- 318
           +           G   L  A ++GH+ + ++L+ +  ADVNA DN G+  L +A++    
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195

Query: 319 -DREAIAQFLVKQNADIGMKDNDGNSPCH 346
            D EAI   L+   AD+ ++   G +P  
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLI 224

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 96.8 bits (242), Expect = 3e-23
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE-GQTPLHYAVVCDREAIAQFLVKQ 330
             E    L  AV    +++ + L+   A+VN ++ E G TPLH AV   RE I + L++ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 331 NADIGMKDNDGNSPCHV 347
            AD  ++  +G +P  +
Sbjct: 62  GADPVLRKKNGATPFLL 78

>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Length = 86

 Score =  105 bits (263), Expect = 2e-28
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQ 172
           + ++F      V         K S D  L+LYALYK AT G     +P    M  R KW+
Sbjct: 1   VSQLFEEKAKAVNEL----PTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWE 56

Query: 173 AWQKLGAMPPEEAMQKYIDIVTELYPTWAA 202
           AW+ L     E+A ++YI +V +L   +++
Sbjct: 57  AWENLKGKSQEDAEKEYIALVDQLIAKYSS 86

>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} Length = 89

 Score =  104 bits (260), Expect = 6e-28
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 110 STELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARA 169
           S  L   F  A   V         +  +    +LY LYK A  G  +   P  L +  +A
Sbjct: 1   SMALQADFDRAAEDVRKL----KARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKA 56

Query: 170 KWQAWQKLGAMPPEEAMQKYIDIVTELYPTWA 201
           KW+AW     +  E+A   YI    EL   + 
Sbjct: 57  KWEAWNLKKGLSTEDATSAYISKAKELIEKYG 88

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  105 bits (266), Expect = 2e-27
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            + A  +        +L   +    V+  D+EG  PL+ AV    + I++ L+ + AD+N
Sbjct: 9   LLEAANQRDTKKVKEIL--QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNA-DIGMKDNDGNSPCH 346
            +++   +P  YA    R  I  +++K    D+   +  G +   
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALI 111

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  101 bits (254), Expect = 1e-25
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 270 LRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK 329
           ++  E  A L  A  R    + E+L      V+  D EG TPL+ AV  +   IA+ L+ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 330 QNADIGMKDNDGNSPCH 346
           + ADI ++++  +SP  
Sbjct: 61  RGADINLQNSISDSPYL 77

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 99.1 bits (248), Expect = 7e-25
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA-DVNAKDNEGQTPLHYAVVCDR 320
           I+ G  +NL++S   +P  +A  +G   I   ++     D+N  +  G   L  A     
Sbjct: 59  IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 321 EAIAQFLVKQ-NADIGMKDNDGNSPCH 346
               + L++    DI  +++ G +   
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTALI 145

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 98.7 bits (247), Expect = 1e-24
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 262 IENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSK-NADVNAKDNEGQTPLHYAVVCD 319
           +++    +N  +  G   L  A ++GH++  +LL+     D++ +++ G T L  AV   
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151

Query: 320 R-----EAIAQFLVKQNADIGMKDNDGNSPCHV 347
                 + I + L++  AD  +KDN G +    
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.7 bits (203), Expect = 2e-18
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 262 IENG-VSVNLRDSEGRAPLHWAV-----DRGHLNISELLVSKNADVNAKDNEGQTPLHYA 315
           +E+G   ++ ++  G   L  AV     ++ + +I +LL+   AD + KDN G+T + YA
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185

Query: 316 VVCDREAIAQFLVKQN 331
                  I++ L + N
Sbjct: 186 NQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.4 bits (132), Expect = 6e-09
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           K  E    L  A   D + + + L      +   D +GN+P ++
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI 45

>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Length = 87

 Score =  102 bits (255), Expect = 2e-27
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 114 DEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQA 173
              F  A   V         K S++  L +Y  YK AT G  +  +P  L  T +AKW A
Sbjct: 3   QAEFEKAAEEVRHL----KTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDA 58

Query: 174 WQKLGAMPPEEAMQKYIDIVTELYPTWA 201
           W +L     E+AM+ YI+ V EL   + 
Sbjct: 59  WNELKGTSKEDAMKAYINKVEELKKKYG 86

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  106 bits (267), Expect = 3e-27
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK-NADV 301
            +H    +   +    L  IENG SV ++D   + PLH A   G L + ELL     + V
Sbjct: 110 CLHLAVGKKWFEVSQFL--IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV 167

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQN-ADIGMKDNDGNSPCHV 347
           N +D +G TPL +A+       A  LV++  A+  + DN G     V
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  105 bits (265), Expect = 6e-27
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 3/105 (2%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
             H     G+++    L        +N   ++G   LH AV +    +S+ L+   A V 
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR 134

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQ-NADIGMKDNDGNSPCH 346
            KD   Q PLH A       + + L     + +  +D  G +P  
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  104 bits (263), Expect = 1e-26
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDS---EGRAPLHWAVDRGHLNISELLVSK-- 297
            +H        +  + L  +    +VNL D     G  P H A   G+L + + L  +  
Sbjct: 39  PLHWSVSFQAHEITSFL--LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96

Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             D+N   N+G T LH AV      ++QFL++  A + +KD     P H 
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHR 146

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  103 bits (260), Expect = 3e-26
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 245 AIHAFAREGDMDNLLKC-IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA 303
            +H    E +   + +        +  +D +GR PLHW+V      I+  L+SK  +VN 
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 304 ---KDNEGQTPLHYAVVCDREAIAQFLVKQ--NADIGMKDNDGNSPCHV 347
               D+ G TP H A       + + L  +    D+    N G +  H+
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 89.4 bits (223), Expect = 4e-21
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 275 GRAPLHWAVDRGHLN-ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD 333
              PLH A        + ELL SK + +  KD +G+ PLH++V      I  FL+ +  +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 334 I---GMKDNDGNSPCHV 347
           +      D+ G +P H+
Sbjct: 62  VNLDDYPDDSGWTPFHI 78

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 83.7 bits (208), Expect = 7e-19
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVS-VNLRDSEGRAPLHWAVDRGHLNISELLVSKN-AD 300
            +H  A  G +    LL     G S VN +D +G  PL  A+  GH + + LLV K  A+
Sbjct: 143 PLHRAASVGSLKLIELL--CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200

Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVK 329
            +  DN+G      A+    E + +F + 
Sbjct: 201 YDLVDNKGAKAEDVAL---NEQVKKFFLN 226

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  107 bits (270), Expect = 4e-27
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  A  G       L  I  G +VN+  ++  +PLH A   GHL+  ++L+   A VN
Sbjct: 62  PMHEAAIHGHQLSLRNL--ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
               +  TPL  A V         L++  A +   ++D  SP H 
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIHE 163

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  106 bits (266), Expect = 1e-26
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            IH  AR G ++  N L  I  G +++ + S    PL+ A +       + L+   ADVN
Sbjct: 160 PIHEAARRGHVECVNSL--IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            +     +PLH  V    E +A  L+   AD   K+ +G  P  +
Sbjct: 218 -QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  104 bits (262), Expect = 5e-26
 Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 245 AIHAFAREG--DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +      G  D  NLL  +++G SV   +S+  +P+H A  RGH+     L++   +++
Sbjct: 128 PLFNACVSGSWDCVNLL--LQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNID 184

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            K +   TPL+ A    + A  + L++  AD+  +    +SP H 
Sbjct: 185 HKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHA 228

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  100 bits (251), Expect = 1e-24
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 3/109 (2%)

Query: 240 DLKMDAIHAFAREGDMD-NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
           D K   +      G  D   ++ + N +  +       +P+H A   GH      L+S+ 
Sbjct: 25  DGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS--DWSPMHEAAIHGHQLSLRNLISQG 82

Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             VN    +  +PLH A +    +  + L+K  A +     D ++P   
Sbjct: 83  WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 84.1 bits (209), Expect = 1e-18
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +E+G  VN +     +PLH  V      ++ LL+   AD  AK+ EG+ P+      +  
Sbjct: 210 LESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV-PPESP 267

Query: 322 AIAQFLVKQNADI 334
               FL ++ A +
Sbjct: 268 LAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 75.6 bits (187), Expect = 9e-16
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 12/91 (13%)

Query: 262 IENGVSVNLRDSE-----GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV 316
           +  G  +   D +     G  P       G       L+S     +A      +P+H A 
Sbjct: 15  VPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDAVS--DWSPMHEAA 67

Query: 317 VCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           +   +   + L+ Q   + +   D  SP H 
Sbjct: 68  IHGHQLSLRNLISQGWAVNIITADHVSPLHE 98

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.1 bits (126), Expect = 8e-08
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +HA  R    +   LL  ++ G     +++EG+ P+        L     L  + A + 
Sbjct: 225 PLHAVVRTASEELACLL--MDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLP 281

Query: 303 A 303
            
Sbjct: 282 K 282

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  104 bits (262), Expect = 6e-27
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
                AR+ D    + L  +E    V+  D  GR  L +    G      LL    AD++
Sbjct: 47  PWWTAARKADEQALSQL--LE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103

Query: 303 AKDNE-GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            +D   G T LH A    R  + + LV+  ADI ++D  G +   +
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 96.4 bits (241), Expect = 5e-24
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 262 IENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
            E G  ++ RD   G   LH A       + E LV   AD+  +D  G T L  A    +
Sbjct: 96  AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 155

Query: 321 EAIAQFLVKQNADIGMKD 338
                  ++    IG++ 
Sbjct: 156 TTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 76.8 bits (190), Expect = 7e-17
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 264 NGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAI 323
           N +  +    EG          GH           ADV ++    +TP   A     E  
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQA 59

Query: 324 AQFLVKQNADIGMKDNDGNSPCH 346
              L++ + D+   D +G +   
Sbjct: 60  LSQLLE-DRDVDAVDENGRTALL 81

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  105 bits (265), Expect = 6e-27
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 245 AIHAFAREGDMD--NLLKCIENG------VSVNLRDSEGRAPLHWAVDRGHLNISELLVS 296
            +H    +G +    +L   ++         +   +  G   LH A   G+L I ELLVS
Sbjct: 81  PLHLACEQGCLASVGVL--TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138

Query: 297 KNADVNAKDN-EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             ADVNA++   G+T LH AV      +   L+K  AD+      G SP  +
Sbjct: 139 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  101 bits (254), Expect = 2e-25
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRD-SEGRAPLHWAVDRGHLNISELLVSKNADV 301
            +H  +  G +    LL  +  G  VN ++   GR  LH AVD  + ++  LL+   ADV
Sbjct: 120 CLHLASIHGYLGIVELL--VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           N    +G +P           I Q L +   +      +      
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  101 bits (254), Expect = 2e-25
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 245 AIHAFAREGDMDNLLKCIE----NGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD 300
            +H      +    ++ I     +   +N +++  + PLH AV      I+E L+    D
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70

Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD------IGMKDNDGNSPCHV 347
              +D  G TPLH A      A    L +          +   + +G++  H+
Sbjct: 71  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 96.5 bits (241), Expect = 2e-23
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 272 DSEGRAPLHWAVDRGH----LNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFL 327
             +G + LH A+        + +   +    A +N ++N  QTPLH AV+ ++  IA+ L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 328 VKQNADIGMKDNDGNSPCHV 347
           +    D  ++D  GN+P H+
Sbjct: 65  LGAGCDPELRDFRGNTPLHL 84

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A+H      + D  +LL  ++ G  VN    +G +P      R    I + L     +  
Sbjct: 154 ALHLAVDLQNPDLVSLL--LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211

Query: 303 AKDNEGQTPLHYAVVCDREAIA 324
               E +    Y    +     
Sbjct: 212 QMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 9/49 (18%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 303 AKDNEGQTPLHYAVVCDREA----IAQFLVKQNADIGMKDNDGNSPCHV 347
               +G + LH A++ + +A    + + +    A +  ++N   +P H+
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL 51

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  102 bits (257), Expect = 7e-27
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   A  G ++    L  +E G   N  +  GR P+   +  G   ++ELL+   A+ N
Sbjct: 15  GLATAAARGQVETVRQL--LEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPN 71

Query: 303 AKDNEGQT-PLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             D    T P+H A           L +  A + + D  G  P  +
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 97.1 bits (243), Expect = 7e-25
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 265 GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIA 324
              +++      A L  A  RG +     L+   AD NA +  G+ P+    +     +A
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVA 60

Query: 325 QFLVKQNADIGMKDNDGN-SPCHV 347
           + L+   A+    D      P H 
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHD 84

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 89.4 bits (223), Expect = 5e-22
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 262 IENGVSVNLRDSEGR-APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
           + +G   N  D      P+H A   G L+   +L    A ++  D  G+ P+  A     
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123

Query: 321 EAIAQFLVKQNAD 333
             IA++L     D
Sbjct: 124 RDIARYLHAATGD 136

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  102 bits (258), Expect = 8e-27
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 242 KMDAIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
             D +   A  G ++    L  +E G + N  +S GR P+   +  G   ++ELL+   A
Sbjct: 12  SADWLATAAARGRVEEVRAL--LEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA 68

Query: 300 DVNAKDNEGQT-PLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           + N  D    T P+H A           L +  A + ++D  G  P  +
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 95.2 bits (238), Expect = 7e-24
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 262 IENGVSVNLRDSEGR-APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
           + +G   N  D      P+H A   G L+   +L    A ++ +D  G+ P+  A     
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123

Query: 321 EAIAQFLVKQNADIGMKDNDGNSPCH 346
             +A++L          ++       
Sbjct: 124 RDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 91.0 bits (227), Expect = 3e-22
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +E     ++        L  A  RG +     L+   A+ NA ++ G+ P+    +    
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSA 57

Query: 322 AIAQFLVKQNADIGMKDNDG 341
            +A+ L+   A+    D   
Sbjct: 58  RVAELLLLHGAEPNCADPAT 77

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  101 bits (253), Expect = 1e-26
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           +  G  +    S+    L  A   G  +   +L++  ADV AKD  G TPLH A      
Sbjct: 14  VPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHL 70

Query: 322 AIAQFLVKQNADIGMKDNDGNSPCHV 347
            + + L++  AD+  +D  G +   +
Sbjct: 71  EVVKLLLEAGADVXAQDKFGKTAFDI 96

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 76.5 bits (189), Expect = 2e-17
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +   AR G  D   +L  + NG  V  +D  G  PLH A   GHL + +LL+   ADV 
Sbjct: 27  KLLEAARAGQDDEVRIL--MANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFL 327
           A+D  G+T    ++    E +A+ L
Sbjct: 85  AQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 282 AVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
                H + S  LV + + + +        L  A    ++   + L+   AD+  KD +G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 342 NSPCH 346
           ++P H
Sbjct: 58  STPLH 62

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  104 bits (261), Expect = 2e-26
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 8/123 (6%)

Query: 245 AIHAFAREGDMDNLLKC-IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV-- 301
            +   A+E D+  L K     G  V+ R + G   LH A    +L  + +L+    ++  
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65

Query: 302 ---NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWM--L 356
               ++  EGQT LH AV+     + + L+ + A +  +              +     L
Sbjct: 66  EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125

Query: 357 HAA 359
             A
Sbjct: 126 SFA 128

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 97.7 bits (244), Expect = 5e-24
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 18/103 (17%)

Query: 262 IENGVSV-----NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDN---------- 306
           +E    +          EG+  LH AV   ++N+   L+++ A V+A+            
Sbjct: 57  MEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN 116

Query: 307 ---EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
               G+ PL +A     E I + L++  ADI  +D+ GN+  H
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 93.8 bits (234), Expect = 1e-22
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 27/128 (21%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRD-------------SEGRAPLHWAVDRGHLN 289
           A+H      +++    L  +  G SV+ R                G  PL +A   G   
Sbjct: 78  ALHIAVINQNVNLVRAL--LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE 135

Query: 290 ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIA----QFLVKQNADIGMK------DN 339
           I  LL+   AD+ A+D+ G T LH  ++   +  A      L+  +    +K      +N
Sbjct: 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN 195

Query: 340 DGNSPCHV 347
            G +P  +
Sbjct: 196 QGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 308 GQTPLHYAVVC-DREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
            ++PL  A    D +A+++ L  +  ++  +   G +  H+ 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA 44

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (263), Expect = 4e-26
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A +    + ++     L  +  G   NL +     PLH A       I ++L+    D +
Sbjct: 34  ASYYAIADNNVRLVCTL--LNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDS 89

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
             D++G T L+YAV        +  VK+N  +      G
Sbjct: 90  QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (262), Expect = 5e-26
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 248 AFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE 307
           +          LK   +       D  G +  ++A+   ++ +   L++  A  N  +N 
Sbjct: 5   SRINTWKS-KQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLEN- 62

Query: 308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            + PLH A   +   I + L+    D    D+ GN+  + 
Sbjct: 63  -EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY 101

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 98.8 bits (247), Expect = 6e-24
 Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 16/118 (13%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEG-RAPLHWAVDRGHLNISELLVSKNADV 301
           A++     G+M    L   ++    +      G +   + AV    ++I    +S+    
Sbjct: 98  ALYYAVDSGNMQTVKLF--VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS- 154

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAA 359
                   + +H  +      +   L+         ++    P           +  A
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP----------DIKLA 202

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 90.3 bits (225), Expect = 7e-21
 Identities = 13/100 (13%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           + +      D+   +    +          +   + +H  +  GH+++  LL+      N
Sbjct: 132 SFYHAVMLNDVSIVSYF--LSEI-PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188

Query: 303 AKDNEGQTP-LHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
             ++    P +  A+      + Q L K + +I   + + 
Sbjct: 189 TNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLEN 228

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.9 bits (211), Expect = 5e-19
 Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAP-LHWAVDRGHLNISELLVSKNADV 301
            IH   + G +D   LL  ++   S N  +S    P +  A+D   + + + L   + ++
Sbjct: 164 CIHITIKNGHVDMMILL--LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI 221

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
                   +     V+ D   IA+ +++++ +        +    
Sbjct: 222 Y-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 75.6 bits (187), Expect = 9e-16
 Identities = 9/97 (9%), Positives = 28/97 (28%), Gaps = 11/97 (11%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            I       D++    L   +  +++        +     V      I+++++ K+ +  
Sbjct: 198 DIKLAIDNKDIEMLQAL--FKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYK 248

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDN 339
           +        +      D        ++      +K N
Sbjct: 249 SDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVKKN 285

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  105 bits (265), Expect = 6e-26
 Identities = 14/85 (16%), Positives = 25/85 (29%)

Query: 263 ENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREA 322
            NG +V          +  A D     + +LL  K  +V    N G             A
Sbjct: 278 HNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPA 337

Query: 323 IAQFLVKQNADIGMKDNDGNSPCHV 347
           + +  +  +A +  +         V
Sbjct: 338 VKRMKLAPSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  102 bits (257), Expect = 8e-25
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 265 GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIA 324
            ++    D E    +H A  +G  +    L+        ++  G T LH A        A
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA 69

Query: 325 QFLVKQNADIGMKDNDGNSPCHV 347
           ++L             G  P H+
Sbjct: 70  KYLASVGEVH--SLWHGQKPIHL 90

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  101 bits (254), Expect = 2e-24
 Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 245 AIHAFAREGDMD--NLL---KCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
            +       + +  +L+      ++ + ++  + +G + LHWA+     +++   V    
Sbjct: 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWM--LH 357
           DVN +DNE   PL+ +V      + + L+++     ++    ++   V      W+  + 
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295

Query: 358 AA 359
           AA
Sbjct: 296 AA 297

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =   99 bits (250), Expect = 6e-24
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 13/119 (10%)

Query: 236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRG--HLNISEL 293
           E   +             + +       N +  +++  +G+  LHW V  G  +L + ++
Sbjct: 105 EGAKERGQMPESLLNECDEREV------NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKI 158

Query: 294 LVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV-----KQNADIGMKDNDGNSPCHV 347
           LV   A   AKD   +TPL  A+          ++     K +  +   +  GNS  H 
Sbjct: 159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.0 bits (245), Expect = 4e-23
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 27/127 (21%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            IH  AR+G  D    L  IE GVS  +++  G   LH A   G ++ ++ L S     +
Sbjct: 23  KIHVAARKGQTDEVRRL--IETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS 80

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM---------------------KDNDG 341
                GQ P+H AV+ ++  +   LV+   + G                      K   G
Sbjct: 81  LWH--GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKG 138

Query: 342 NSPCHVC 348
            +  H C
Sbjct: 139 QTALHWC 145

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 82.6 bits (205), Expect = 8e-18
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 4/73 (5%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            + A A     +   LL   E    V    + G         +    +  + ++ +A V 
Sbjct: 293 FVPAAADPSKQEVLQLL--QEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVR 350

Query: 303 AKDNEGQTPLHYA 315
            +          +
Sbjct: 351 TRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.0 bits (167), Expect = 7e-13
 Identities = 7/55 (12%), Positives = 20/55 (36%)

Query: 293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           +      +    D+E    +H A    +    + L++      +++  G +  H+
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHL 59

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  105 bits (264), Expect = 8e-26
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
           CI  G  VN  D +   PL  AV      +   L+   AD    +   ++ LH A     
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRD 211

Query: 321 EAIAQFLVKQN---ADIGMKDNDGNSPCHV 347
             +  +++       DI   D +G +   +
Sbjct: 212 FGMMVYMLNSTKLKGDIEELDRNGMTALMI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  101 bits (255), Expect = 2e-24
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 12/115 (10%)

Query: 245 AIHAFAREGDMDNLLKC---IENGVSVNLR--------DSEGRAPLHWAVDRGHLNISEL 293
           A+   A     D +      +E G  V+            +GR  LH+A    ++ I + 
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297

Query: 294 LVSKN-ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           LV +  ++ + +D +G+TP+  A    R  +  +L++Q A +   D   ++   +
Sbjct: 298 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 99.3 bits (248), Expect = 2e-23
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELL--------VSKNADVNAKDNEGQTPLH 313
               V++       R  LHW         SE L        ++  ADVNA D +  TPL 
Sbjct: 113 TRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 171

Query: 314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            AV+  R  +  +L+K  AD  + +    S  H 
Sbjct: 172 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ 205

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 95.4 bits (238), Expect = 3e-22
 Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 18/119 (15%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN---A 299
            +              L  ++ G    + +   R+ LH A       +   +++      
Sbjct: 169 PLMLAVLARRRRLVAYL--MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226

Query: 300 DVNAKDNEGQTPLHYAVVC---DREAIAQFLVKQNADI--------GMKDNDGNSPCHV 347
           D+   D  G T L         D+ A A+ LV++ A +          +   G +  H 
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 94.6 bits (236), Expect = 7e-22
 Identities = 15/72 (20%), Positives = 28/72 (38%)

Query: 263 ENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREA 322
           E G + + +D +G+ P+  A   G + +   L+ + A V A D    T    A   +   
Sbjct: 301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN 360

Query: 323 IAQFLVKQNADI 334
           I     +   + 
Sbjct: 361 IVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 92.7 bits (231), Expect = 3e-21
 Identities = 26/161 (16%), Positives = 50/161 (31%), Gaps = 14/161 (8%)

Query: 198 PTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMD---AIHAFAREGD 254
             W      + K  +   + T S+  +    S   Y +   N+L+             G+
Sbjct: 15  SVWMPPMENEEKNRKNHQSITSSQHSLLEA-SYDGYIKRQRNELQHYSLYPNPQGYGNGN 73

Query: 255 MDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY 314
                    N       + E    LH     G   I+E +  ++ ++       +T LH+
Sbjct: 74  DFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHW 131

Query: 315 AVVCDREAIAQFL--------VKQNADIGMKDNDGNSPCHV 347
                    ++ L        +   AD+   D D N+P  +
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
            I   A+EG ++    L  I+ G SV   D+        A    H NI ++      + 
Sbjct: 316 PIMLAAQEGRIEVVMYL--IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  101 bits (255), Expect = 2e-25
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 245 AIHAFAREGDMD---NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
                AR+ D      LL+       V+  D  GR  L +    G      LL    AD+
Sbjct: 48  PWWTAARKADEQALSQLLE----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103

Query: 302 NAKDNE-GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           + +D   G T LH A    R  + + LV+  ADI ++D  G +   
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 149

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 95.0 bits (237), Expect = 6e-23
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 262 IENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
            E G  ++ RD   G   LH A       + E LV   AD+  +D  G T L  A    +
Sbjct: 97  AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 156

Query: 321 EAIAQFLVKQNADIGMKDN 339
                  ++    IG++  
Sbjct: 157 TTPKGNPMQFGRRIGLEKV 175

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 16/120 (13%), Positives = 29/120 (24%), Gaps = 26/120 (21%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           A+H  A     +    L  +E G  + + D  G   L  A +          +     + 
Sbjct: 114 ALHMAAGYVRPEVVEAL--VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 171

Query: 303 ----------------------AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDND 340
                                  K  +G+   +     D            A+   KD +
Sbjct: 172 LEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE 231

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 72.3 bits (178), Expect = 9e-15
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 4/79 (5%)

Query: 269 NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV 328
           +    EG          GH           ADV ++    +TP   A     E     L+
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL 65

Query: 329 KQNADIGMKDNDGNSPCHV 347
            ++ D+   D +G +    
Sbjct: 66  -EDRDVDAVDENGRTALLF 83

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV 316
                 +  +  +G+   +    +   +   +     A+  AKD E    L YAV
Sbjct: 186 YAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAV 238

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 96.7 bits (242), Expect = 3e-25
 Identities = 32/72 (44%), Positives = 43/72 (59%)

Query: 275 GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
           GR PLH A   GHL + +LL+   ADVNAKD  G+TPLH A       + + L++  AD+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 335 GMKDNDGNSPCH 346
             KD +G +P H
Sbjct: 62  NAKDKNGRTPLH 73

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 92.4 bits (231), Expect = 1e-23
 Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
            +H  AR G ++   LL  +E G  VN +D  GR PLH A   GHL + +LL+   ADVN
Sbjct: 5   PLHLAARNGHLEVVKLL--LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNA 332
           AKD  G+TPLH A       + + L++  A
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 99.7 bits (249), Expect = 3e-25
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 13/109 (11%)

Query: 245 AIHAFAREGDMDNLLKC------IENGVSVNLRDSEGRAPLHWAVDRGHLNISE------ 292
                 + G  D           +E G  +       +  +   +    ++ +E      
Sbjct: 78  LFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137

Query: 293 -LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDND 340
            +       +  KD  G T L +   C +    + +        +K+N 
Sbjct: 138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 99.7 bits (249), Expect = 3e-25
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 17/126 (13%)

Query: 236 ESGNDLKMDAIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNIS-- 291
              +++  D +     E        L  I  G  +  R  EG          G  +I+  
Sbjct: 36  VLKSNILYDVLRNNNDEARYKISMFL--INKGADIKSRTKEGTTLFFPLFQGGGNDITGT 93

Query: 292 ----ELLVSKNADVNAKDNEGQTPLHYAV------VCDREAIAQFLVKQN-ADIGMKDND 340
               ++ + K AD+ A     +  +   +        +   + + +  Q+   + +KD  
Sbjct: 94  TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW 153

Query: 341 GNSPCH 346
           G +   
Sbjct: 154 GLTALE 159

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 98.6 bits (246), Expect = 8e-25
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 9/114 (7%)

Query: 242 KMDAIHAFAREGDMDNLLKCIENGVSVNL---RDSEGRAPLHWAVDRGHLNISELLVSKN 298
           +   + A A  G  ++ L+  E G        + +     L    D     IS  L++K 
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 299 ADVNAKDNEGQTPLHYAV------VCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
           AD+ ++  EG T            +     + +  +++ ADI            
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 65.1 bits (159), Expect = 9e-13
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 3/77 (3%)

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADV---NAKDNEGQTPLHYAVVCDREAIAQFLVKQ 330
                +  A   G       L  K  +      K N     L       R  I+ FL+ +
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 331 NADIGMKDNDGNSPCHV 347
            ADI  +  +G +    
Sbjct: 65  GADIKSRTKEGTTLFFP 81

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 91.8 bits (228), Expect = 1e-21
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 22/127 (17%)

Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
           ND     +    + G+M   +               G+  LH A++R   +  ELLV K 
Sbjct: 62  NDTIPILLDIAEKTGNMREFIN-----SPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116

Query: 299 ADVNAKDN--------------EGQTPLHYAVVCDREAIAQFLVKQ---NADIGMKDNDG 341
           ADV+A+                 G+ PL  A   ++  I  +L +     AD+  +D+ G
Sbjct: 117 ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRG 176

Query: 342 NSPCHVC 348
           N+  H  
Sbjct: 177 NTVLHAL 183

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 25/141 (17%)

Query: 244 DAIHAFAREGDMDNLLKCIE----NGVSVN----LRDSEGRAPLHWAV---DRGHLNISE 292
             +      G  D L   +     +   +        S G+  L  A+     G  +   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 293 LLVSK-----------NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
           +L+             N+        GQT LH A+    +   + LV++ AD+  +    
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 342 NSPCHVCESDWPWM---LHAA 359
                     + +    L  A
Sbjct: 127 FFQPKDEGGYFYFGELPLSLA 147

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 27/123 (21%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVS---VNLRDSEGRAPLHWAVDRGH---------LNI 290
            +   A        + L   ENG     +  +DS G   LH  V               +
Sbjct: 143 PLSLAACTNQPHIVHYL--TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 291 SELLVSKNADVNAK-------DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNS 343
            +LL+ K A +          +N+G +PL  A    +  I Q ++++     + D   + 
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR----EIADAAAHH 256

Query: 344 PCH 346
             H
Sbjct: 257 HHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 54.8 bits (132), Expect = 8e-09
 Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 22/95 (23%)

Query: 275 GRAPLHWAVDRG----HLNISELLVSKNADVNAKD----NEGQTPLHYAVVCDRE---AI 323
            R  L   V RG       +   L++    +  ++    + G+T L  A++         
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 324 AQFLVKQ-----------NADIGMKDNDGNSPCHV 347
              L+             N+        G +  H+
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHI 99

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.6 bits (116), Expect = 8e-07
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 13/68 (19%)

Query: 254 DMDNLLKCIENGVSVN-------LRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDN 306
            M +LL  +     +        L +++G +PL  A   G + I + ++ +       D 
Sbjct: 199 KMYDLL--LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR----EIADA 252

Query: 307 EGQTPLHY 314
                 H+
Sbjct: 253 AAHHHHHH 260

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 92.4 bits (229), Expect = 2e-21
 Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 5/138 (3%)

Query: 214 DAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNL-RD 272
                + +     + +  +     G        H        +         +++N+  D
Sbjct: 69  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 128

Query: 273 SEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC----DREAIAQFLV 328
             G  PLHW     +L + + LV   ++    DN G++ L  AV      D       L 
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 329 KQNADIGMKDNDGNSPCH 346
                + ++D+   +  H
Sbjct: 189 YLYPCLILEDSMNRTILH 206

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 78.9 bits (194), Expect = 1e-16
 Identities = 16/79 (20%), Positives = 34/79 (43%)

Query: 238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
             + K +  +   ++  ++NL         +N +DS G   L+ A   G+++I + L+  
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 305

Query: 298 NADVNAKDNEGQTPLHYAV 316
            AD    +  G  P+ +  
Sbjct: 306 GADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 77.4 bits (190), Expect = 4e-16
 Identities = 16/120 (13%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHL----NISELLVSKN 298
            +H      +++    L  +++G +    D+ G + L  AV   +         LL    
Sbjct: 134 PLHWLTSIANLELVKHL--VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191

Query: 299 ADVNAKDNEGQTPLHYAVVCDR------------EAIAQFLVKQNADIGMKDNDGNSPCH 346
             +  +D+  +T LH+ ++               + +  ++VK+         +      
Sbjct: 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP 251

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.9 bits (168), Expect = 3e-13
 Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 4/93 (4%)

Query: 258 LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN----ADVNAKDNEGQTPLH 313
           +   ++         +  +       +    +     +         +NA+D+ G T L+
Sbjct: 229 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 288

Query: 314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
            A      +I   L+   AD  + +  G  P  
Sbjct: 289 IAARLGNISIVDALLDYGADPFIANKSGLRPVD 321

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 89.8 bits (223), Expect = 6e-21
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 21/119 (17%)

Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +      G+   L               +G + LH A+++  L   +LLV   ADV+ + 
Sbjct: 66  LQIDKDSGNPKPL-----VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 306 NE-------------GQTPLHYAVVCDREAIAQFLVK---QNADIGMKDNDGNSPCHVC 348
                          G+ PL  A    +  +  +L++   Q A +   D+ GN+  H  
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 81.8 bits (202), Expect = 5e-18
 Identities = 25/141 (17%), Positives = 41/141 (29%), Gaps = 24/141 (17%)

Query: 243 MDAIHAFAREGDMDNLLKCIE--------NGVSVNLRDSEGRAPLHWAV---DRGHLNIS 291
            D + +    G  + L   +E           S     S G+  L  AV     G     
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 292 ELLVS-----------KNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDND 340
             L+             NA    +  +G + LH A+        + LV+  AD+ ++   
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 341 GNSPCHVCESDWPWM--LHAA 359
                H     +     L  A
Sbjct: 123 RFFQKHQGTCFYFGELPLSLA 143

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 36/139 (25%)

Query: 243 MDAIHAFAREGDMD--NLLKCIENGVSVNLRDSE-------------GRAPLHWAVDRGH 287
             A+H    +  +    LL  +ENG  V+LR                G  PL  A     
Sbjct: 91  HSALHIAIEKRSLQCVKLL--VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148

Query: 288 LNISELLVSK---NADVNAKDNEG----------------QTPLHYAVVCDREAIAQFLV 328
            ++   L+      A + A D+ G                 + L   +      +   L 
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208

Query: 329 KQNADIGMKDNDGNSPCHV 347
                  + ++ G +P  +
Sbjct: 209 PTVQLEEISNHQGLTPLKL 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 76.0 bits (187), Expect = 5e-16
 Identities = 11/76 (14%), Positives = 27/76 (35%)

Query: 267 SVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQF 326
            +   +S   + L   +  G L +   L          +++G TPL  A    +  I + 
Sbjct: 180 VMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH 239

Query: 327 LVKQNADIGMKDNDGN 342
           ++++        +  +
Sbjct: 240 ILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 10/70 (14%), Positives = 23/70 (32%)

Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
           N  +  A+     +G +    +         + + +G  PL  A   G + I   ++ + 
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 299 ADVNAKDNEG 308
               A  +  
Sbjct: 245 FSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 11/96 (11%)

Query: 275 GRAPLHWAVDRGHLNISELLVSK--------NADVNAKDNEGQTPLHYAVVCDR---EAI 323
            R  L   V RG       L+                + + G+T L  AV+  +    A 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 324 AQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLHAA 359
              L++ + D G      N+ C          LH A
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIA 97

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 89.8 bits (223), Expect = 7e-21
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 265 GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE--------------GQT 310
             S      +G+  LH A++R ++ +  LLV   ADV A  N               G+ 
Sbjct: 91  NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGEL 150

Query: 311 PLHYAVVCDREAIAQFLVK---QNADIGMKDNDGNSPCHV 347
           PL  A   ++ AI +FL++   Q ADI  +D+ GN+  H 
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHA 190

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 83.7 bits (207), Expect = 1e-18
 Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 18/126 (14%)

Query: 252 EGDMDNLLKCIENGVSVNLRDSE-GRAPLHWAVD---RGHLNISELLVSK---------- 297
           E  +  L +  +       +D E G+  L  A+     G  +   LL+            
Sbjct: 30  ESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89

Query: 298 -NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWM- 355
            NA       +GQT LH A+      +   LV+  AD+    N            + +  
Sbjct: 90  VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149

Query: 356 --LHAA 359
             L  A
Sbjct: 150 LPLSLA 155

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 28/138 (20%), Positives = 43/138 (31%), Gaps = 37/138 (26%)

Query: 245 AIHAFAREGDMD--NLLKCIENGVSVNLRDSE--------------GRAPLHWAVDRGHL 288
           A+H      +M    LL  +ENG  V    +               G  PL  A     L
Sbjct: 104 ALHIAIERRNMTLVTLL--VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 289 NISELLVSK---NADVNAKDNEGQTPLHYAVVCDREAI----------------AQFLVK 329
            I + L+      AD++A+D+ G T LH  V      +                   L  
Sbjct: 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP 221

Query: 330 QNADIGMKDNDGNSPCHV 347
                 + +  G +P  +
Sbjct: 222 TLKLEEITNRKGLTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 26/122 (21%)

Query: 245 AIHAFAREGDMD---NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISE--------- 292
            +   A    +     LL+       ++ RDS G   LH  V+     +           
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210

Query: 293 -------LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPC 345
                   L          + +G TPL  A    +  +  ++++       ++       
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ-------REIHEPECR 263

Query: 346 HV 347
           H 
Sbjct: 264 HA 265

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 11/98 (11%)

Query: 265 GVSVNLRDSEGRAPLHWAVDRG-------HLNISELLVSKNADVNAKDNE-GQTPLHYAV 316
                      R  +  AV +         L   +    +  D   KD E G+T L  A+
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 317 VCDR---EAIAQFLVKQNADIGMKDNDGNSPCHVCESD 351
           +            L+             N+        
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYK 100

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 7/55 (12%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV 316
                   + + +G  PL  A   G + +   ++ +               H A 
Sbjct: 220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAA 267

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 78.8 bits (194), Expect = 3e-16
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 13/129 (10%)

Query: 231 FAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNL------RDSEGRAPLHWAV- 283
           FA            AI       D+ ++L+   NG             +     LH AV 
Sbjct: 125 FARRCTPEPQRLWTAI----CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVK 180

Query: 284 --DRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
             ++  L + + ++     ++AK  +G T LHYA + ++    + L+K  A +G  +  G
Sbjct: 181 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG 240

Query: 342 NSPCHVCES 350
            +   +   
Sbjct: 241 ETALDIARK 249

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 77.0 bits (189), Expect = 4e-16
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 247 HAFAREGDMDNLLKCIENGVSVNL------RDSEGRAPLHWAV---DRGHLNISELLVSK 297
                  D+ ++L+   NG             +     LH AV   ++  L + + ++  
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 298 NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP 344
              ++AK  +G T LHYA + ++    + L+K  A +G  +  G + 
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 262

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.3 bits (177), Expect = 1e-14
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 245 AIHAFAREGDMDNLLKC---IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
            +H   +  +  +L      I+NG  ++ + ++G   LH+A      +  +LL+   A V
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDW 352
              +  G+T L  A     +   + L +       +      P HV +  W
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELLEQ------AQAGTFAFPLHV-DYSW 296

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 73.3 bits (179), Expect = 1e-14
 Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 18/196 (9%)

Query: 167 ARAKWQA------WQKLGAMPPEEAMQKYI-------DIVTELYPTWAAGSSLKSKRGQE 213
               ++A       +K G     +  + +I         +T+L             RGQ 
Sbjct: 109 INQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGRPRGQP 168

Query: 214 DAASTDSKAPMGPVFSSFA---YEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNL 270
                 S  P      S      E+            A      +  +   + +G  VN 
Sbjct: 169 PVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNW 228

Query: 271 RDS--EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV 328
            +   +   PL  A     L   E L+   A+VN  D+ G+ PLH+A +     +A   +
Sbjct: 229 VNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL 288

Query: 329 KQNADIGMKDNDGNSP 344
           K+ AD+G +D++G  P
Sbjct: 289 KRGADLGARDSEGRDP 304

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 60.2 bits (145), Expect = 3e-10
 Identities = 26/81 (32%), Positives = 38/81 (46%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE 321
           ++NG +VN  DS GR PLH A   GH  ++ L + + AD+ A+D+EG+ PL  A+     
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA 314

Query: 322 AIAQFLVKQNADIGMKDNDGN 342
            I   L               
Sbjct: 315 DIVTLLRLAKMREAEAAQGQA 335

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 271 RDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK--DNEGQTPLHYAVVCDREAIAQFLV 328
               G      +     L      ++  ADVN      +  TPL  A   +     +FL+
Sbjct: 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL 255

Query: 329 KQNADIGMKDNDGNSPCHVC 348
           +  A++   D+ G  P H  
Sbjct: 256 QNGANVNQADSAGRGPLHHA 275

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.4 bits (172), Expect = 6e-14
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 12/115 (10%)

Query: 245 AIHAFAREGDMDNLLKC---IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
           A+H   R  D  +L      ++N  +++ +  +G   LH+     +    +LL+   A +
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWML 356
              +  G+TPL  A     E   + L +            NS  HV   ++ W L
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQ------ALSGRFNSHVHV---EYEWRL 277

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 69.6 bits (170), Expect = 2e-13
 Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 4/101 (3%)

Query: 250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD--NE 307
                +D L   + +   V +  +E       A + GHL++   L              E
Sbjct: 103 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE 162

Query: 308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKD--NDGNSPCH 346
                  A       +   L +            +      
Sbjct: 163 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 203

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 5/92 (5%)

Query: 262 IENGVSVNLRD--SEGRAPLHWAVDRGHLNISELLVSKNADVNAKD--NEGQTPLHY-AV 316
            E   +  +    +E       A + GHL++   L              E      + AV
Sbjct: 148 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207

Query: 317 VCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
                 +  FL+     +   +          
Sbjct: 208 GRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 239

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 7/75 (9%), Positives = 20/75 (26%), Gaps = 8/75 (10%)

Query: 275 GRAPLHWAVDRGHLNISELL--------VSKNADVNAKDNEGQTPLHYAVVCDREAIAQF 326
           G   L   + R    + + +        +   A       +    L  A+    +     
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 327 LVKQNADIGMKDNDG 341
           L+   + + +   + 
Sbjct: 338 LLSIPSVLALTKANN 352

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.1 bits (135), Expect = 5e-09
 Identities = 10/116 (8%), Positives = 27/116 (23%), Gaps = 4/116 (3%)

Query: 235 EESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLR-DSEGRAPLHWAVDRGHLNISEL 293
             + N  ++  +          N  +   +     ++ +               L+   L
Sbjct: 55  PGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITG-CSSALDTLCL 113

Query: 294 LVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI--GMKDNDGNSPCHV 347
           L++ +  V     E       A       +   L +        M   +      +
Sbjct: 114 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 169

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.1 bits (135), Expect = 5e-09
 Identities = 11/96 (11%), Positives = 25/96 (26%), Gaps = 11/96 (11%)

Query: 245 AIHAFAREGDMDNL--------LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVS 296
            +    R  D   L        +  I+          +    L  A+  G+     LL+S
Sbjct: 281 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 340

Query: 297 KNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNA 332
             + +           +      R  +    ++ + 
Sbjct: 341 IPSVLALTK---ANNYYINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 14/103 (13%), Positives = 27/103 (26%), Gaps = 10/103 (9%)

Query: 243 MDAIHAFAREGDMD---NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNA 299
             A    A  G +     L +      +  ++     A    AV RGH N+   L+    
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGN 342
            +   +          V         F+ +    +    +   
Sbjct: 224 MLAYAEIHEFEYGEKYVN-------PFIARHVNRLKEMHDAFK 259

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 12/116 (10%), Positives = 34/116 (29%), Gaps = 18/116 (15%)

Query: 241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNA 299
           L    + A+A   + +   K +   ++ ++   +        +   G  ++         
Sbjct: 219 LDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT------- 271

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFL--------VKQNADIGMKDNDGNSPCHV 347
              ++  +G   L   +  + E +   +        +K  A       D N    +
Sbjct: 272 --KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	363
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.93
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.92
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.92
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.92
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.92
2rfa_A	232	Transient receptor potential cation channel subfa	99.92
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.92
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.92
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
2etb_A	256	Transient receptor potential cation channel subfam	99.91
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.91
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.91
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.91
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.91
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.91
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.91
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.91
2pnn_A	273	Transient receptor potential cation channel subfa	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.91
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.9
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.9
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.9
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.9
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.9
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.9
2rfa_A	232	Transient receptor potential cation channel subfa	99.9
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.9
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.89
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.89
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.89
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.89
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.89
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.89
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.88
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.88
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.88
3flv_A	119	Acyl-COA-binding domain-containing protein 5; lipi	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
1hbk_A	89	ACBP, acyl-COA binding protein; fatty acid metabol	99.88
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.88
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
2etb_A	256	Transient receptor potential cation channel subfam	99.87
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.87
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.87
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.87
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2cop_A	109	Acyl-coenzyme A binding domain containing 6; acyl	99.87
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.87
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.87
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.86
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.86
3fp5_A	106	Acyl-COA binding protein; ACBP, cacao disease, fat	99.86
2pnn_A	273	Transient receptor potential cation channel subfa	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.86
1st7_A	86	ACBP, acyl-COA-binding protein; four helix bundle,	99.86
3epy_A	89	Acyl-COA-binding domain-containing protein 7; acyl	99.86
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.86
2wh5_A	106	Acyl-COA-binding domain-containing protein 4; alte	99.86
2cqu_A	116	Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi	99.85
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.85
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.85
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.85
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.84
2lbb_A	96	Acyl COA binding protein; protein binding, structu	99.84
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.84
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.84
2cb8_A	87	Acyl-COA-binding protein; acyl-coenzyme A binding	99.84
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.84
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.82
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.81
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.75
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.73
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.72
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.72
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.66
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.66
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.66
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	92.03

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=1.5e-26  Score=200.11  Aligned_cols=136  Identities=34%  Similarity=0.541  Sum_probs=121.1

Q ss_pred             HHHhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHHHHHHHHH
Q 043342          184 EAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIE  263 (363)
Q Consensus       184 ~A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~  263 (363)
                      .|..+.+++|+.|+..+.+                                .+..+..|.||||+|+..++.++++.|++
T Consensus        11 Aa~~G~~~~v~~Ll~~Gad--------------------------------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~   58 (169)
T 4gpm_A           11 AAENGNKDRVKDLIENGAD--------------------------------VNASDSDGRTPLHHAAENGHKEVVKLLIS   58 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCC--------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCC--------------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            3566788888888875432                                23456778899999999999999999999


Q ss_pred             cCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCc
Q 043342          264 NGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNS  343 (363)
Q Consensus       264 ~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~T  343 (363)
                      .|++++.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|.+|+|
T Consensus        59 ~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~T  138 (169)
T 4gpm_A           59 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRT  138 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 043342          344 PCHVCESD  351 (363)
Q Consensus       344 pL~~A~~~  351 (363)
                      |||+|+..
T Consensus       139 pL~~A~~~  146 (169)
T 4gpm_A          139 PLDLAREH  146 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99999865

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=215.12  Aligned_cols=181  Identities=17%  Similarity=0.243  Sum_probs=137.8

Q ss_pred             HHHHhcCCCCHHHHHh-c-CccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHH
Q 043342          172 QAWQKLGAMPPEEAMQ-K-YIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIH  247 (363)
Q Consensus       172 ~aw~~~g~t~l~~A~~-~-yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh  247 (363)
                      +..+..+.+|++.|.. . ...++..|+..+.+. +..+.+|.||++.++..+...  .++.....+....+..|.||+|
T Consensus        46 ~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~  124 (269)
T 4b93_B           46 SAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLH  124 (269)
T ss_dssp             -----------------------------CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccc
Confidence            4455667788887643 2 335677788766654 346778999999888777544  2333445556777888999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 043342          248 AFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFL  327 (363)
Q Consensus       248 ~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~L  327 (363)
                      .|+..++.+++++|++.|+++|.+|..|+||||+||..|+.+++++|+++|+++|.++..|+||||+|+..|+.++|++|
T Consensus       125 ~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~L  204 (269)
T 4b93_B          125 LACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL  204 (269)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             cccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHhcCch
Q 043342          328 VKQNADIGMKDNDGNSPCHVCESDWP  353 (363)
Q Consensus       328 l~~Gad~~~~d~~G~TpL~~A~~~~~  353 (363)
                      +++|++++.+|.+|+||||+|+++-.
T Consensus       205 l~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          205 LLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            99999999999999999999987743

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.93  E-value=4.3e-26  Score=205.23  Aligned_cols=179  Identities=21%  Similarity=0.299  Sum_probs=156.5

Q ss_pred             HHHHhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCCCCc---ccccccccccccCCCCchHHHH
Q 043342          172 QAWQKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG---PVFSSFAYEEESGNDLKMDAIH  247 (363)
Q Consensus       172 ~aw~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~~~~~~~~~~g~t~Lh  247 (363)
                      +..+..|.++++.|. .+..++++.|+..+.... ..+..+.++++.+...+...   .++.......+..+..|.||||
T Consensus        38 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  116 (237)
T 3b7b_A           38 DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI  116 (237)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHH
T ss_pred             CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHH
Confidence            334456889999864 578899999998765433 35677889999887776443   3444444566677888999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 043342          248 AFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFL  327 (363)
Q Consensus       248 ~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~L  327 (363)
                      +|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|
T Consensus       117 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  196 (237)
T 3b7b_A          117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF  196 (237)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          328 VKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       328 l~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +++|++++.+|..|.||||+|+.+
T Consensus       197 l~~gad~~~~d~~g~t~l~~A~~~  220 (237)
T 3b7b_A          197 LSRDSDVTLKNKEGETPLQCASLN  220 (237)
T ss_dssp             HTTTCCTTCCCTTSCCHHHHSCTT
T ss_pred             HHcCCCCCccCCCCCCHHHHHHHH
Confidence            999999999999999999999887

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=3.6e-26  Score=210.38  Aligned_cols=180  Identities=23%  Similarity=0.251  Sum_probs=138.4

Q ss_pred             HHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcc---ccccc---------------
Q 043342          171 WQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP---VFSSF---------------  231 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~---ll~~~---------------  231 (363)
                      .+..+..|.||++.| ..+..++++.|+..+.+.. ..+..+.++++.+...+....   ++...               
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS  116 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcc
Confidence            344556688888875 4577888888888765443 356678888887776654321   22111               


Q ss_pred             -------------------------------ccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCC-CChHH
Q 043342          232 -------------------------------AYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSE-GRAPL  279 (363)
Q Consensus       232 -------------------------------~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~-g~TpL  279 (363)
                                                     ....+..+..|.||||+|+..|+.+++++|+++|++++.++.. |+|||
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL  196 (282)
T 1oy3_D          117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL  196 (282)
T ss_dssp             ---------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH
T ss_pred             cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHH
Confidence                                           1224556778999999999999999999999999999999865 99999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          280 HWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       280 h~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|.+.
T Consensus       197 ~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999765

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=3e-26  Score=209.46  Aligned_cols=176  Identities=18%  Similarity=0.214  Sum_probs=156.1

Q ss_pred             HhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCCCC---cccccccccccccCCCCchHHHHHHH
Q 043342          175 QKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPM---GPVFSSFAYEEESGNDLKMDAIHAFA  250 (363)
Q Consensus       175 ~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~---~~ll~~~~~~~~~~~~~g~t~Lh~Aa  250 (363)
                      +..|.|+++.|. .+..++++.|+..+.+.. ..+..+.++++.+...+..   ..++.......+..+..|.||||+|+
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  132 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  132 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHH
Confidence            567889999864 578899999998766543 4667889999988776643   33444444466777888999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 043342          251 REGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ  330 (363)
Q Consensus       251 ~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  330 (363)
                      ..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       133 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  212 (253)
T 1yyh_A          133 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH  212 (253)
T ss_dssp             HHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHhcC
Q 043342          331 NADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       331 Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |++++.+|..|.||+|+|+.+
T Consensus       213 ga~~~~~d~~g~tpl~~A~~~  233 (253)
T 1yyh_A          213 FANRDITDHMDRLPRDIAQER  233 (253)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCccccccCCCCHHHHHHHc
Confidence            999999999999999999876

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.93  E-value=1.1e-25  Score=200.71  Aligned_cols=176  Identities=19%  Similarity=0.226  Sum_probs=156.2

Q ss_pred             HhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc---ccccccccccccCCCCchHHHHHHH
Q 043342          175 QKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG---PVFSSFAYEEESGNDLKMDAIHAFA  250 (363)
Q Consensus       175 ~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~~~~~~~~~~g~t~Lh~Aa  250 (363)
                      +..|.++++.| ..+..++++.|+..+.+.. ..+..+.++++.+...+...   .++..........+..|.||||+|+
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence            56788999986 5578999999998765443 46678899999888777443   3444444466777888999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 043342          251 REGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ  330 (363)
Q Consensus       251 ~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  330 (363)
                      ..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHhcC
Q 043342          331 NADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       331 Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |++++.+|..|.||+|+|+..
T Consensus       181 ga~~~~~~~~g~t~l~~A~~~  201 (223)
T 2f8y_A          181 FANRDITDHMDRLPRDIAQER  201 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCCccccccCCCHHHHHHHh
Confidence            999999999999999999876

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.93  E-value=6.8e-26  Score=202.53  Aligned_cols=178  Identities=22%  Similarity=0.248  Sum_probs=153.9

Q ss_pred             HHhcCCCCHHHHH-hcCccccccccccc--cccccccCCCCcchhhhhcCCCCCc---cccccc-ccccccCCCCchHHH
Q 043342          174 WQKLGAMPPEEAM-QKYIDIVTELYPTW--AAGSSLKSKRGQEDAASTDSKAPMG---PVFSSF-AYEEESGNDLKMDAI  246 (363)
Q Consensus       174 w~~~g~t~l~~A~-~~yv~~v~~Ll~~~--~~~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~-~~~~~~~~~~g~t~L  246 (363)
                      .+..|.++++.|. .+..++++.|+..+  .......+..+.++++.+...+...   .++... ..+.+..+..|.|||
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L  111 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL  111 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHH
Confidence            4567889999864 57889999999877  3333336678899999887766443   233322 145566778899999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 043342          247 HAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN-ADVNAKDNEGQTPLHYAVVCDREAIAQ  325 (363)
Q Consensus       247 h~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g-adin~~d~~G~TpLh~A~~~g~~~iv~  325 (363)
                      |+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.++++
T Consensus       112 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~  191 (228)
T 2dzn_A          112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV  191 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             HHH-hCCCCCCCCCCCCCcHHHHHhcC
Q 043342          326 FLV-KQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       326 ~Ll-~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|+ ++|++++.+|..|.||+|+|.++
T Consensus       192 ~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          192 LLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             HHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            999 89999999999999999999876

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=5.6e-26  Score=207.62  Aligned_cols=181  Identities=18%  Similarity=0.215  Sum_probs=132.6

Q ss_pred             HHHHHhcCCCCHHHHHh-c-------------CccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccc
Q 043342          171 WQAWQKLGAMPPEEAMQ-K-------------YIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYE  234 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A~~-~-------------yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~  234 (363)
                      .+..+..|.||++.|.. +             ..++++.|+..+.......+..|.++++.+...+....  ++...+.+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45667889999998754 3             78999999998877766667899999999888775432  33334556


Q ss_pred             cccCCCCchHHHHHHHHcCCHHHHHHHHHcCC-CCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 043342          235 EESGNDLKMDAIHAFAREGDMDNLLKCIENGV-SVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLH  313 (363)
Q Consensus       235 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~-~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh  313 (363)
                      .+..+..|.||||+|+..|+.+++++|++.+. +++.++..|.||||+|+..|+.+++++|++.|++++.+|..|+||||
T Consensus        83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~  162 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH  162 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            67778899999999999999999999999986 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       314 ~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus       163 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  200 (253)
T 1yyh_A          163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE  200 (253)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHC
Confidence            99999999999999999999999999999999999864

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=1.6e-25  Score=202.01  Aligned_cols=179  Identities=21%  Similarity=0.196  Sum_probs=149.9

Q ss_pred             HHHhcCCCCHHHHH-hcCccccccccccccc---cccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHH
Q 043342          173 AWQKLGAMPPEEAM-QKYIDIVTELYPTWAA---GSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAI  246 (363)
Q Consensus       173 aw~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~---~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~L  246 (363)
                      ..+..|.++++.|. .+..++++.|+.....   .....+..|.++++.+...+...  .++...+.+.+..+..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            45678999999864 5778999999987653   24556778899999888777543  233334455677788999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCC------CccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcC
Q 043342          247 HAFAREGDMDNLLKCIENGVS------VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDN-EGQTPLHYAVVCD  319 (363)
Q Consensus       247 h~Aa~~g~~~~v~~LL~~g~~------vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~-~G~TpLh~A~~~g  319 (363)
                      |+|+..|+.+++++|++.+.+      ++..+..|.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            999999999999999999865      567788899999999999999999999999999999998 9999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          320 REAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       320 ~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +.+++++|+++|++++.+|..|.||||+|+..
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  194 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR  194 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS
T ss_pred             CHHHHHHHHHcCCCCCcccCCCCCHHHHHHcc
Confidence            99999999999999999999999999999876

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.92  E-value=2.5e-25  Score=198.81  Aligned_cols=174  Identities=20%  Similarity=0.237  Sum_probs=152.8

Q ss_pred             CCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc---ccccccc-ccccc-CCCCchHHHHHHHH
Q 043342          178 GAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG---PVFSSFA-YEEES-GNDLKMDAIHAFAR  251 (363)
Q Consensus       178 g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~-~~~~~-~~~~g~t~Lh~Aa~  251 (363)
                      |.+|++.| ..+..++++.|+..+.......+..+.++++.+...+...   .++.... .+... .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            67899986 5678999999999887766667888999999888777543   3333331 22233 77889999999999


Q ss_pred             cCCHHHHHHHHHcC--CCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 043342          252 EGDMDNLLKCIENG--VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK  329 (363)
Q Consensus       252 ~g~~~~v~~LL~~g--~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  329 (363)
                      .|+.+++++|+++|  ++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999998  8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCCCCCCCCCcHHHHHhcC
Q 043342          330 QN-ADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       330 ~G-ad~~~~d~~G~TpL~~A~~~  351 (363)
                      +| ++++.+|..|+||||+|+..
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~  184 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAE  184 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHT
T ss_pred             cCcccccCcCCCCCCHHHHHHHc
Confidence            99 99999999999999999876

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.92  E-value=5.3e-26  Score=209.26  Aligned_cols=178  Identities=20%  Similarity=0.178  Sum_probs=153.8

Q ss_pred             HHhcCCCCHHHH-HhcCcccccccccccccc--ccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHH
Q 043342          174 WQKLGAMPPEEA-MQKYIDIVTELYPTWAAG--SSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHA  248 (363)
Q Consensus       174 w~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~--~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~  248 (363)
                      .+..|.||++.| ..+..++++.|+..+...  ....+..|.|+++.++..+...  .++...+.+.+..+..|.||||+
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~   84 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            456789999986 557889999999876653  4456778999999888777543  23334455667778899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCC-----------------------------------------------CccCCCCCChHHHH
Q 043342          249 FAREGDMDNLLKCIENGVS-----------------------------------------------VNLRDSEGRAPLHW  281 (363)
Q Consensus       249 Aa~~g~~~~v~~LL~~g~~-----------------------------------------------vn~~d~~g~TpLh~  281 (363)
                      |+..|+.+++++|++++++                                               ++.++..|.||||+
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  164 (282)
T 1oy3_D           85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (282)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHH
Confidence            9999999999999998754                                               67788899999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          282 AVDRGHLNISELLVSKNADVNAKDNE-GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       282 A~~~g~~~iv~~Ll~~gadin~~d~~-G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+..|+.+++++|+++|++++.++.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus       165 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTS
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHc
Confidence            99999999999999999999999865 99999999999999999999999999999999999999999876

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.92  E-value=2.1e-25  Score=199.90  Aligned_cols=178  Identities=21%  Similarity=0.230  Sum_probs=155.1

Q ss_pred             HHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHH
Q 043342          173 AWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAF  249 (363)
Q Consensus       173 aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~A  249 (363)
                      ..+..|.++++.| ..+..++++.|+..+.+. ...+..+.++++.+...+...  .++.....+.+..+..|.||||+|
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  113 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA  113 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            4456788999986 567899999999876543 346678899999887766443  233334455566788899999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 043342          250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK  329 (363)
Q Consensus       250 a~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  329 (363)
                      +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++
T Consensus       114 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  193 (231)
T 3aji_A          114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT  193 (231)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHhcC
Q 043342          330 QNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       330 ~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|++++.+|..|.||+|+|...
T Consensus       194 ~ga~~~~~~~~g~t~l~~A~~~  215 (231)
T 3aji_A          194 QGASIYIENKEEKTPLQVAKGG  215 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHSCHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHhh
Confidence            9999999999999999999754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.92  E-value=1.1e-25  Score=202.73  Aligned_cols=185  Identities=23%  Similarity=0.288  Sum_probs=156.7

Q ss_pred             HHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc---ccccccc---cccccCCCCchH
Q 043342          172 QAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG---PVFSSFA---YEEESGNDLKMD  244 (363)
Q Consensus       172 ~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~---~~~~~~~~~g~t  244 (363)
                      +..+..|.+|++.| ..+..++++.|+..+.... ..+..+.++++.+...+...   .++....   ...+..+..|.|
T Consensus        40 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t  118 (241)
T 1k1a_A           40 DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT  118 (241)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC
T ss_pred             CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCc
Confidence            34456688999986 4578899999998766543 35678899999887776543   2333322   145667788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccCC-CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 043342          245 AIHAFAREGDMDNLLKCIENGVSVNLRD-SEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAI  323 (363)
Q Consensus       245 ~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~i  323 (363)
                      |||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus       119 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  198 (241)
T 1k1a_A          119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPL  198 (241)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999999998 789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHhcC--chHHHH
Q 043342          324 AQFLVKQNADIGMKDNDGNSPCHVCESD--WPWMLH  357 (363)
Q Consensus       324 v~~Ll~~Gad~~~~d~~G~TpL~~A~~~--~~~~~~  357 (363)
                      +++|+++|++++.+|..|.||||+|+..  .+.++.
T Consensus       199 v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~  234 (241)
T 1k1a_A          199 VRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG  234 (241)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred             HHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhh
Confidence            9999999999999999999999999865  444433

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.92  E-value=4.5e-25  Score=198.10  Aligned_cols=175  Identities=18%  Similarity=0.221  Sum_probs=148.4

Q ss_pred             cCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc---cccccccccc----ccCCCCchHHHHH
Q 043342          177 LGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG---PVFSSFAYEE----ESGNDLKMDAIHA  248 (363)
Q Consensus       177 ~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~~~~----~~~~~~g~t~Lh~  248 (363)
                      .|.||++.| ..+..++++.|+..........+..|.++++.+...+...   .++.......    ...+..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            367899986 5578899999998733344556788999999888877543   2333322211    4456789999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCccCCC-------------CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 043342          249 FAREGDMDNLLKCIENGVSVNLRDS-------------EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA  315 (363)
Q Consensus       249 Aa~~g~~~~v~~LL~~g~~vn~~d~-------------~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A  315 (363)
                      |+..|+.+++++|+++|++++.++.             .|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999988765             799999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHH----HHHHhCCCCC------CCCCCCCCcHHHHHhcC
Q 043342          316 VVCDREAIA----QFLVKQNADI------GMKDNDGNSPCHVCESD  351 (363)
Q Consensus       316 ~~~g~~~iv----~~Ll~~Gad~------~~~d~~G~TpL~~A~~~  351 (363)
                      +..++.+++    ++|+++|+++      +.+|..|+||||+|+.+
T Consensus       162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~  207 (232)
T 2rfa_A          162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE  207 (232)
T ss_dssp             HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHc
Confidence            999999988    9999999998      58999999999999865

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.92  E-value=9.5e-25  Score=195.64  Aligned_cols=174  Identities=18%  Similarity=0.235  Sum_probs=154.2

Q ss_pred             CCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccccccCCCCchHHHHHHHHcCC
Q 043342          178 GAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLKMDAIHAFAREGD  254 (363)
Q Consensus       178 g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~  254 (363)
                      +.++++.| ..+.++.++.++..........+..+.++++.+...+....  ++.....+.+..+..|.||||+|+..|+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            56778875 56789999999987766566677889999998877775432  2333345566778889999999999999


Q ss_pred             HHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 043342          255 MDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI  334 (363)
Q Consensus       255 ~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~  334 (363)
                      .+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus        86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  165 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST  165 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHhcC
Q 043342          335 GMKDNDGNSPCHVCESD  351 (363)
Q Consensus       335 ~~~d~~G~TpL~~A~~~  351 (363)
                      +.+|..|.||||+|+..
T Consensus       166 ~~~~~~g~t~L~~A~~~  182 (231)
T 3aji_A          166 NIQDTEGNTPLHLACDE  182 (231)
T ss_dssp             CCCCTTSCCHHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHC
Confidence            99999999999999876

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.92  E-value=1.2e-24  Score=190.75  Aligned_cols=176  Identities=18%  Similarity=0.190  Sum_probs=152.3

Q ss_pred             hcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHHHHc
Q 043342          176 KLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFARE  252 (363)
Q Consensus       176 ~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa~~  252 (363)
                      ..+.++++.| ..+..+.++.|+..........+..+.++++.+...+...  .++...+.+.+..+..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            3466778875 5678899999998777556667788999999887776443  233334556677788899999999999


Q ss_pred             CCHHHHHHHH-HcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCC-----HHHHH
Q 043342          253 GDMDNLLKCI-ENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN-ADVNAKDNEGQTPLHYAVVCDR-----EAIAQ  325 (363)
Q Consensus       253 g~~~~v~~LL-~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g-adin~~d~~G~TpLh~A~~~g~-----~~iv~  325 (363)
                      |+.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            9999999999 567799999999999999999999999999999998 9999999999999999999998     99999


Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          326 FLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       326 ~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|+++|++++.+|..|.||||+|+..
T Consensus       163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~  188 (201)
T 3hra_A          163 LLMENGADQSIKDNSGRTAMDYANQK  188 (201)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHCCCCCCccCCCCCCHHHHHHHc
Confidence            99999999999999999999999864

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.92  E-value=1e-24  Score=202.17  Aligned_cols=172  Identities=22%  Similarity=0.278  Sum_probs=131.8

Q ss_pred             CCHHHH-HhcCcccccccccccccc-------ccccCCCCcchhhhhcCCCCCc---ccccccccccccCCCCchHHHHH
Q 043342          180 MPPEEA-MQKYIDIVTELYPTWAAG-------SSLKSKRGQEDAASTDSKAPMG---PVFSSFAYEEESGNDLKMDAIHA  248 (363)
Q Consensus       180 t~l~~A-~~~yv~~v~~Ll~~~~~~-------~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~~~~~~~~~~g~t~Lh~  248 (363)
                      +++..| ..+.+++|+.|+..+...       ....+..+.++++.+...+...   ..+...+.+.+..+..|.||||+
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~   92 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHV   92 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            346665 557889999998766543       2233455677787766554332   23333455667788999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 043342          249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV  328 (363)
Q Consensus       249 Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  328 (363)
                      ||..|+.+++++|++.|++++.++..|.||+|+|+..++.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+
T Consensus        93 A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll  172 (269)
T 4b93_B           93 AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL  172 (269)
T ss_dssp             HHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHH
T ss_pred             HHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCcHHHHHhcC
Q 043342          329 KQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       329 ~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ++|++++.++..|.||||+|+..
T Consensus       173 ~~gadvn~~~~~g~t~Lh~A~~~  195 (269)
T 4b93_B          173 QHGASINASNNKGNTALHEAVIE  195 (269)
T ss_dssp             HTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             HCCCCCCccccCCCcHHHHHHHc
Confidence            99999999999999999999876

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=2.8e-24  Score=174.61  Aligned_cols=112  Identities=31%  Similarity=0.447  Sum_probs=106.6

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 043342          239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC  318 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~  318 (363)
                      +..|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|+++|.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhc
Q 043342          319 DREAIAQFLVKQNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       319 g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      ++.+++++|+++|++++.+|..|.||||+|..
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            99999999999999999999999999999954

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=1.1e-24  Score=185.77  Aligned_cols=143  Identities=27%  Similarity=0.331  Sum_probs=126.1

Q ss_pred             CCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHH
Q 043342          178 GAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMD  256 (363)
Q Consensus       178 g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~  256 (363)
                      +.++++.| ..+.+++++.|+....                               ......+..|.||||+|+..|+.+
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~~~~-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~   56 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCTVQS-------------------------------VNCRDIEGRQSTPLHFAAGYNRVS   56 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTT-------------------------------TTCCCTTTTCCCHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHcCC-------------------------------CCccccccCCCCHHHHHHHcChHH
Confidence            44566664 4567777777775321                               122334566789999999999999


Q ss_pred             HHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 043342          257 NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM  336 (363)
Q Consensus       257 ~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~  336 (363)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        57 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  136 (165)
T 3twr_A           57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK  136 (165)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHhcC
Q 043342          337 KDNDGNSPCHVCESD  351 (363)
Q Consensus       337 ~d~~G~TpL~~A~~~  351 (363)
                      +|..|.||||+|.++
T Consensus       137 ~~~~g~t~l~~a~~~  151 (165)
T 3twr_A          137 KNRDGNTPLDLVKDG  151 (165)
T ss_dssp             CCTTSCCTGGGSCTT
T ss_pred             cCCCCCChhHhHhcC
Confidence            999999999999876

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.91  E-value=7.2e-25  Score=200.07  Aligned_cols=113  Identities=22%  Similarity=0.332  Sum_probs=108.1

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCC-------------CChHHHHHHHcCCHHHHHHHHh---CCCCCC
Q 043342          239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSE-------------GRAPLHWAVDRGHLNISELLVS---KNADVN  302 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~-------------g~TpLh~A~~~g~~~iv~~Ll~---~gadin  302 (363)
                      +..|.||||+|+..|+.+++++|+++|++++.++..             |.||||+|+..|+.+++++|++   .|+++|
T Consensus        87 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n  166 (256)
T 2etb_A           87 FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE  166 (256)
T ss_dssp             TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT
T ss_pred             cccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC
Confidence            467999999999999999999999999999999886             9999999999999999999999   999999


Q ss_pred             CCCCCCCcHHHHHHH--cCCHH-------HHHHHHhCCCCC-------CCCCCCCCcHHHHHhcC
Q 043342          303 AKDNEGQTPLHYAVV--CDREA-------IAQFLVKQNADI-------GMKDNDGNSPCHVCESD  351 (363)
Q Consensus       303 ~~d~~G~TpLh~A~~--~g~~~-------iv~~Ll~~Gad~-------~~~d~~G~TpL~~A~~~  351 (363)
                      .+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..
T Consensus       167 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  231 (256)
T 2etb_A          167 ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE  231 (256)
T ss_dssp             CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHh
Confidence            999999999999999  78888       999999999999       99999999999999876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.91  E-value=2.1e-24  Score=185.21  Aligned_cols=143  Identities=20%  Similarity=0.262  Sum_probs=126.0

Q ss_pred             CCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHH
Q 043342          178 GAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMD  256 (363)
Q Consensus       178 g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~  256 (363)
                      +.+|++.| ..+.++.++.|+..+..                               ..+..+..|.||||+|+..|+.+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~-------------------------------~~~~~~~~g~t~L~~A~~~~~~~   50 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDN-------------------------------LVNKPDERGFTPLIWASAFGEIE   50 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSG-------------------------------GGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcc-------------------------------cccCCCCCCCCHHHHHHHcCCHH
Confidence            45778875 55778888888764331                               12445677899999999999999


Q ss_pred             HHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 043342          257 NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM  336 (363)
Q Consensus       257 ~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~  336 (363)
                      ++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        51 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  130 (172)
T 3v30_A           51 TVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT  130 (172)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHhcC
Q 043342          337 KDNDGNSPCHVCESD  351 (363)
Q Consensus       337 ~d~~G~TpL~~A~~~  351 (363)
                      +|..|.||||+|+..
T Consensus       131 ~~~~g~t~l~~A~~~  145 (172)
T 3v30_A          131 EADSGYTPMDLAVAL  145 (172)
T ss_dssp             CCTTSCCHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHh
Confidence            999999999999865

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.91  E-value=2.6e-24  Score=188.08  Aligned_cols=149  Identities=23%  Similarity=0.290  Sum_probs=132.7

Q ss_pred             HHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHH
Q 043342          171 WQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAF  249 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A  249 (363)
                      .+..+..|.||++.| ..+..++++.|+..+.                                +.+..+..|.||||+|
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--------------------------------~~~~~~~~g~t~L~~A   75 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFD--------------------------------KLEDKDIEGSTALIWA   75 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC--------------------------------CTTCCCTTSCCHHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc--------------------------------ccccccccCccHHHHH
Confidence            455677788888875 4567788877776332                                1233456789999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 043342          250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK  329 (363)
Q Consensus       250 a~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  329 (363)
                      +..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        76 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  155 (192)
T 2rfm_A           76 VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE  155 (192)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHhcC
Q 043342          330 QNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       330 ~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|++++.+|..|.||||+|+..
T Consensus       156 ~ga~~~~~~~~g~t~l~~A~~~  177 (192)
T 2rfm_A          156 LGADISARDLTGLTAEASARIF  177 (192)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHT
T ss_pred             CCCCCCCcCCCCCCHHHHHHHh
Confidence            9999999999999999999865

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.91  E-value=5.9e-25  Score=204.60  Aligned_cols=179  Identities=21%  Similarity=0.220  Sum_probs=139.7

Q ss_pred             CCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHHHHcCC
Q 043342          178 GAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFAREGD  254 (363)
Q Consensus       178 g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~  254 (363)
                      +.++++.| ..+.+++++.|+..+.+. ...+..|.++++.+...+...  .++...+.+.+..+..|.||||+|+..|+
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~  118 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            34556654 456777777777766543 335566777887777666433  22223344455666777888888888888


Q ss_pred             HHHHHHHHHcCCCCccCC------------------------------------------------------------CC
Q 043342          255 MDNLLKCIENGVSVNLRD------------------------------------------------------------SE  274 (363)
Q Consensus       255 ~~~v~~LL~~g~~vn~~d------------------------------------------------------------~~  274 (363)
                      .+++++|+++|++++..+                                                            ..
T Consensus       119 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  198 (299)
T 1s70_B          119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (299)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCC
Confidence            888888888877776554                                                            35


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC-ch
Q 043342          275 GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD-WP  353 (363)
Q Consensus       275 g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~-~~  353 (363)
                      |.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|.++ ..
T Consensus       199 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~  278 (299)
T 1s70_B          199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG  278 (299)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGH
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999877 45


Q ss_pred             HHHH
Q 043342          354 WMLH  357 (363)
Q Consensus       354 ~~~~  357 (363)
                      ++.+
T Consensus       279 ~l~~  282 (299)
T 1s70_B          279 YLEE  282 (299)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.91  E-value=1.8e-24  Score=194.62  Aligned_cols=179  Identities=22%  Similarity=0.330  Sum_probs=156.0

Q ss_pred             HHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccccccCCCCchHHHHH
Q 043342          172 QAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLKMDAIHA  248 (363)
Q Consensus       172 ~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g~t~Lh~  248 (363)
                      +..++.|.++++.| ..+..++++.|+..+.+.. ..+..+.++++.+...+....  ++...+...+..+..|.||||+
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   83 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL   83 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence            34566788999986 5578999999998766443 356778999998887775432  3333344556678889999999


Q ss_pred             HHHcCCHHHHHHHHHcC-CCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 043342          249 FAREGDMDNLLKCIENG-VSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFL  327 (363)
Q Consensus       249 Aa~~g~~~~v~~LL~~g-~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~L  327 (363)
                      |+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  163 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL  163 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999998 88999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          328 VKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       328 l~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +++|++++.+|..|.||||+|+..
T Consensus       164 l~~g~~~~~~~~~g~t~L~~A~~~  187 (237)
T 3b7b_A          164 LAAKCDLHAVNIHGDSPLHIAARE  187 (237)
T ss_dssp             HTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHh
Confidence            999999999999999999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=2.6e-24  Score=177.99  Aligned_cols=115  Identities=27%  Similarity=0.395  Sum_probs=111.3

Q ss_pred             cCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 043342          237 SGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV  316 (363)
Q Consensus       237 ~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~  316 (363)
                      ..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          317 VCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       317 ~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  119 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE  119 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc
Confidence            99999999999999999999999999999999865

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.91  E-value=8.5e-25  Score=203.81  Aligned_cols=180  Identities=19%  Similarity=0.192  Sum_probs=151.3

Q ss_pred             HHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccccccCCCCchHHHHH
Q 043342          172 QAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLKMDAIHA  248 (363)
Q Consensus       172 ~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g~t~Lh~  248 (363)
                      +..+..|.||++.| ..+..++++.|+..+.+. ...+..+.++++.+...+....  ++........ .+..|.||||+
T Consensus        86 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~g~t~L~~  163 (285)
T 3d9h_A           86 NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHE  163 (285)
T ss_dssp             CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-CSCTTSCHHHH
T ss_pred             CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC-CCCCCCCHHHH
Confidence            34456788999986 457889999999876543 3466788999998877664432  2222222222 23458999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 043342          249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV  328 (363)
Q Consensus       249 Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  328 (363)
                      |+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++. +..|+||||+|+..++.+++++|+
T Consensus       164 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll  242 (285)
T 3d9h_A          164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLM  242 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999995 889999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCcHHHHHhcCchH
Q 043342          329 KQNADIGMKDNDGNSPCHVCESDWPW  354 (363)
Q Consensus       329 ~~Gad~~~~d~~G~TpL~~A~~~~~~  354 (363)
                      ++|++++.+|.+|+||||+|+.+.+.
T Consensus       243 ~~gad~~~~d~~g~t~l~~A~~~~~~  268 (285)
T 3d9h_A          243 DFGADTQAKNAEGKRPVELVPPESPL  268 (285)
T ss_dssp             HTTCCTTCCCTTSCCGGGGSCTTSHH
T ss_pred             HCCCCCCCcCCCCCCHHHHhcCccHH
Confidence            99999999999999999999977533

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.91  E-value=4.3e-25  Score=211.99  Aligned_cols=178  Identities=17%  Similarity=0.185  Sum_probs=152.2

Q ss_pred             HHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcc---ccccc---cccccc------
Q 043342          171 WQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP---VFSSF---AYEEES------  237 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~---ll~~~---~~~~~~------  237 (363)
                      .+..+..|.||++.| ..++.++++.|+..+.   ......+.++++.+...+....   ++...   ....+.      
T Consensus        46 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  122 (364)
T 3ljn_A           46 PTIQNRFGCTALHLACKFGCVDTAKYLASVGE---VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECD  122 (364)
T ss_dssp             TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC---CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC---CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcc
Confidence            345566789999986 5678999999998665   4445678999998887775432   22220   111111      


Q ss_pred             -----------CCCCchHHHHHHHHcC--CHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCC----
Q 043342          238 -----------GNDLKMDAIHAFAREG--DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD----  300 (363)
Q Consensus       238 -----------~~~~g~t~Lh~Aa~~g--~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad----  300 (363)
                                 .+..|.||||+|+..|  +.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++    
T Consensus       123 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  202 (364)
T 3ljn_A          123 EREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL  202 (364)
T ss_dssp             CCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSC
T ss_pred             hHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc
Confidence                       5667899999999999  99999999999999999999999999999999999999999999998    


Q ss_pred             -CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          301 -VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       301 -in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                       +|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..
T Consensus       203 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  254 (364)
T 3ljn_A          203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA  254 (364)
T ss_dssp             CTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence             999999999999999999999999999999999999999999999999876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=2.3e-24  Score=186.48  Aligned_cols=143  Identities=24%  Similarity=0.320  Sum_probs=126.0

Q ss_pred             CCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHH
Q 043342          178 GAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMD  256 (363)
Q Consensus       178 g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~  256 (363)
                      +.++++.| ..+..++++.|+....                               .+.+..+..|.||||+|+..|+.+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~   53 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTE-------------------------------NDLNQGDDHGFSPLHWACREGRSA   53 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTT-------------------------------SCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCc-------------------------------ccccccCCCCCCHHHHHHHcCcHH
Confidence            45666664 4567777777775322                               223445677899999999999999


Q ss_pred             HHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 043342          257 NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM  336 (363)
Q Consensus       257 ~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~  336 (363)
                      ++++|++.|++++.++..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        54 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  133 (179)
T 3f6q_A           54 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI  133 (179)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHhcC
Q 043342          337 KDNDGNSPCHVCESD  351 (363)
Q Consensus       337 ~d~~G~TpL~~A~~~  351 (363)
                      +|..|.||||+|+..
T Consensus       134 ~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A          134 CNKYGEMPVDKAKAP  148 (179)
T ss_dssp             CCTTSCCGGGGSCHH
T ss_pred             hccCCCCcHHHHHHH
Confidence            999999999999766

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=6.2e-24  Score=179.03  Aligned_cols=113  Identities=30%  Similarity=0.431  Sum_probs=109.5

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 043342          239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC  318 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~  318 (363)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  110 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH  110 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          319 DREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       319 g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+.+++++|+++|++++.+|..|.||||+|+.+
T Consensus       111 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  143 (153)
T 1awc_B          111 NHQEVVELLIKYGADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            999999999999999999999999999999875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.91  E-value=3.9e-24  Score=192.42  Aligned_cols=180  Identities=18%  Similarity=0.203  Sum_probs=152.1

Q ss_pred             HHHHhcCCCCHHHH-HhcCcccccccccc---ccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHH
Q 043342          172 QAWQKLGAMPPEEA-MQKYIDIVTELYPT---WAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDA  245 (363)
Q Consensus       172 ~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~---~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~  245 (363)
                      +..+..|.++++.| ..+.+++++.|+..   ........+..+.++++.+...+...  .++...+.+....+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            34577899999986 55788888888752   22334456778999999888777543  23333445566778889999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCC----CCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCC
Q 043342          246 IHAFAREGDMDNLLKCIENGV----SVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD-NEGQTPLHYAVVCDR  320 (363)
Q Consensus       246 Lh~Aa~~g~~~~v~~LL~~g~----~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d-~~G~TpLh~A~~~g~  320 (363)
                      ||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            999999999999999999987    888899999999999999999999999999999999999 889999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          321 EAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       321 ~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .+++++|+++|++++.+|..|.||||+|+..
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  193 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGR  193 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999865

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.91  E-value=4.9e-24  Score=181.97  Aligned_cols=143  Identities=18%  Similarity=0.222  Sum_probs=128.6

Q ss_pred             cCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCH
Q 043342          177 LGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDM  255 (363)
Q Consensus       177 ~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~  255 (363)
                      .|.|+++.| ..+..++++.|+..+.                                ..+..+..|.||||+|+..|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~~~   49 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQEN--------------------------------VINHTDEEGFTPLMWAAAHGQI   49 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSS--------------------------------CTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCC--------------------------------CcCCCCCCCCCHHHHHHHCCCH
Confidence            367888875 4567788888876432                                1234566789999999999999


Q ss_pred             HHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 043342          256 DNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIG  335 (363)
Q Consensus       256 ~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~  335 (363)
                      +++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus        50 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  129 (167)
T 3v31_A           50 AVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT  129 (167)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHhcC
Q 043342          336 MKDNDGNSPCHVCESD  351 (363)
Q Consensus       336 ~~d~~G~TpL~~A~~~  351 (363)
                      .+|..|.||||+|+..
T Consensus       130 ~~~~~g~t~l~~A~~~  145 (167)
T 3v31_A          130 IETDSGYNSMDLAVAL  145 (167)
T ss_dssp             CCCTTSCCHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHc
Confidence            9999999999999865

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.91  E-value=1.3e-24  Score=200.34  Aligned_cols=180  Identities=18%  Similarity=0.185  Sum_probs=142.6

Q ss_pred             HHHHhcCCCCHHHH-HhcCcccccccccccc----cccc---ccCCCCcchhhhhcCC---CCCc---cccccccc----
Q 043342          172 QAWQKLGAMPPEEA-MQKYIDIVTELYPTWA----AGSS---LKSKRGQEDAASTDSK---APMG---PVFSSFAY----  233 (363)
Q Consensus       172 ~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~----~~~~---~~~~~g~~~~~~a~~~---~~~~---~ll~~~~~----  233 (363)
                      +.++..|.++++.| ..+..++|+.|+....    ....   ..+..+.|+++.+...   +...   .++.....    
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            45677788888875 4577888888876322    1111   2466788898877643   4332   23332211    


Q ss_pred             ------ccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCC--------------CCChHHHHHHHcCCHHHHHH
Q 043342          234 ------EEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDS--------------EGRAPLHWAVDRGHLNISEL  293 (363)
Q Consensus       234 ------~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~--------------~g~TpLh~A~~~g~~~iv~~  293 (363)
                            .....+..|.||||+|+..|+.+++++|+++|++++.++.              .|.||||+|+..|+.+++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                  1122456899999999999999999999999999999887              79999999999999999999


Q ss_pred             HHh---CCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHhCCCCCC-------CCCCCCCcHHHHHhcC
Q 043342          294 LVS---KNADVNAKDNEGQTPLHYAVVCDR---------EAIAQFLVKQNADIG-------MKDNDGNSPCHVCESD  351 (363)
Q Consensus       294 Ll~---~gadin~~d~~G~TpLh~A~~~g~---------~~iv~~Ll~~Gad~~-------~~d~~G~TpL~~A~~~  351 (363)
                      |++   .|+++|.+|..|+||||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+..
T Consensus       167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence            999   999999999999999999999998         799999999999997       5899999999999876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=2.5e-24  Score=178.19  Aligned_cols=116  Identities=21%  Similarity=0.251  Sum_probs=111.4

Q ss_pred             cccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCcHHH
Q 043342          235 EESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE-GQTPLH  313 (363)
Q Consensus       235 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~-G~TpLh  313 (363)
                      .+..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+. ++.+++++|+++|++++.+|.. |+||||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~   83 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVH   83 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHH
Confidence            45667889999999999999999999999999999999999999999999 9999999999999999999999 999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       314 ~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  121 (136)
T 1d9s_A           84 DAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ  121 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            99999999999999999999999999999999999854

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.91  E-value=1e-23  Score=187.86  Aligned_cols=164  Identities=18%  Similarity=0.253  Sum_probs=144.3

Q ss_pred             cCccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcC
Q 043342          188 KYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENG  265 (363)
Q Consensus       188 ~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g  265 (363)
                      +..++++.|+..+.......+..+.++++.+...+....  .+.....+.+..+..|.||||+|+..|+.+++++|++.+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            356788999998877766667889999999888775442  223334556677888999999999999999999999998


Q ss_pred             C-CCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 043342          266 V-SVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSP  344 (363)
Q Consensus       266 ~-~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~Tp  344 (363)
                      . +++.++..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  161 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP  161 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence            6 889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q 043342          345 CHVCESD  351 (363)
Q Consensus       345 L~~A~~~  351 (363)
                      ||+|+..
T Consensus       162 L~~A~~~  168 (223)
T 2f8y_A          162 LFLAARE  168 (223)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=1.2e-23  Score=173.97  Aligned_cols=114  Identities=34%  Similarity=0.466  Sum_probs=109.1

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 043342          238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVV  317 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~  317 (363)
                      ....+.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+.
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          318 CDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       318 ~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~  123 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN  123 (136)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC
Confidence            9999999999999999999999999999999865

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=2e-24  Score=197.33  Aligned_cols=173  Identities=18%  Similarity=0.135  Sum_probs=133.2

Q ss_pred             CCCHHHH-HhcCccccccccc----cccccccc---cCCCCcchhhhhc---CCCCCc---ccccccc----------cc
Q 043342          179 AMPPEEA-MQKYIDIVTELYP----TWAAGSSL---KSKRGQEDAASTD---SKAPMG---PVFSSFA----------YE  234 (363)
Q Consensus       179 ~t~l~~A-~~~yv~~v~~Ll~----~~~~~~~~---~~~~g~~~~~~a~---~~~~~~---~ll~~~~----------~~  234 (363)
                      .++++.| ..+..+.++.|+.    .+......   .+..|.++++.+.   ..+...   .++....          ..
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~   85 (260)
T 3jxi_A            6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP   85 (260)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence            3445554 4466666666655    33322221   1245777777555   333322   2222211          11


Q ss_pred             cccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCC--------------CCCChHHHHHHHcCCHHHHHHHHh---C
Q 043342          235 EESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRD--------------SEGRAPLHWAVDRGHLNISELLVS---K  297 (363)
Q Consensus       235 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d--------------~~g~TpLh~A~~~g~~~iv~~Ll~---~  297 (363)
                      ....+..|.||||+||..|+.+++++|+++|++++.++              ..|.||||+|+..|+.+++++|++   .
T Consensus        86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  165 (260)
T 3jxi_A           86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK  165 (260)
T ss_dssp             BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            23344588999999999999999999999999999998              689999999999999999999999   9


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHhCCCCC-------CCCCCCCCcHHHHHhcC
Q 043342          298 NADVNAKDNEGQTPLHYAVVCDR---------EAIAQFLVKQNADI-------GMKDNDGNSPCHVCESD  351 (363)
Q Consensus       298 gadin~~d~~G~TpLh~A~~~g~---------~~iv~~Ll~~Gad~-------~~~d~~G~TpL~~A~~~  351 (363)
                      |+++|.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|+||||+|+..
T Consensus       166 ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  235 (260)
T 3jxi_A          166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT  235 (260)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc
Confidence            99999999999999999999887         79999999999998       78999999999999876

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.91  E-value=2.7e-24  Score=208.08  Aligned_cols=185  Identities=19%  Similarity=0.280  Sum_probs=159.1

Q ss_pred             hhhhhHHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcc---cccccc--cccccCC
Q 043342          166 TARAKWQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP---VFSSFA--YEEESGN  239 (363)
Q Consensus       166 ~~~ak~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~---ll~~~~--~~~~~~~  239 (363)
                      ...+..+..+..|.||++.| ..++.++++.|+..+.+.. ..+..+.++++.+...+....   ++....  .+.+..+
T Consensus       154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d  232 (373)
T 2fo1_E          154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD  232 (373)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCC
T ss_pred             hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcC
Confidence            34566777888999999986 5578899999998776544 466788999998888775432   222221  4556678


Q ss_pred             CCchHHHHHHHHcC---CHHHHHHHHHcCCCCcc--------CCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCC
Q 043342          240 DLKMDAIHAFAREG---DMDNLLKCIENGVSVNL--------RDSEGRAPLHWAVDRGHLNISELLVSKN-ADVNAKDNE  307 (363)
Q Consensus       240 ~~g~t~Lh~Aa~~g---~~~~v~~LL~~g~~vn~--------~d~~g~TpLh~A~~~g~~~iv~~Ll~~g-adin~~d~~  307 (363)
                      ..|.||||+|+..+   +.+++++|++.|++++.        .+..|.||||+|+..|+.+++++|++++ +++|.+|..
T Consensus       233 ~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~  312 (373)
T 2fo1_E          233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED  312 (373)
T ss_dssp             TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT
T ss_pred             CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCC
Confidence            89999999999998   89999999999999886        5678999999999999999999999875 999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          308 GQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       308 G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.+
T Consensus       313 g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~  356 (373)
T 2fo1_E          313 GKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN  356 (373)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHc
Confidence            99999999999999999999999999999999999999999876

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=3e-24  Score=210.89  Aligned_cols=176  Identities=24%  Similarity=0.317  Sum_probs=147.1

Q ss_pred             HhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccccccCCCCchHHHHHHHH
Q 043342          175 QKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLKMDAIHAFAR  251 (363)
Q Consensus       175 ~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g~t~Lh~Aa~  251 (363)
                      +..|.++++.| ..+..++++.|+..+... ...+..+.++++.+...+....  ++.....+.+..+..|.||||+|+.
T Consensus       209 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  287 (437)
T 1n11_A          209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ  287 (437)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence            34567778875 446677888877755433 3355677888887777664432  2333344556678889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 043342          252 EGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN  331 (363)
Q Consensus       252 ~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G  331 (363)
                      .|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|
T Consensus       288 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  367 (437)
T 1n11_A          288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG  367 (437)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHhcC
Q 043342          332 ADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       332 ad~~~~d~~G~TpL~~A~~~  351 (363)
                      ++++.+|.+|.|||++|.+.
T Consensus       368 a~~~~~~~~g~t~l~~A~~~  387 (437)
T 1n11_A          368 ASPNEVSSDGTTPLAIAKRL  387 (437)
T ss_dssp             CCSCCCCSSSCCHHHHHHHT
T ss_pred             CCCCCCCCCCCCHHHHHHHc
Confidence            99999999999999999866

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.90  E-value=2e-23  Score=180.33  Aligned_cols=108  Identities=42%  Similarity=0.705  Sum_probs=105.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 043342          244 DAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAI  323 (363)
Q Consensus       244 t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~i  323 (363)
                      +.|+.||+.|+.++|+.||++|+++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          324 AQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       324 v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +++|+++|++++.+|.+|+||||+|+..
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~  113 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAEN  113 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            9999999999999999999999999876

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.90  E-value=4.7e-24  Score=201.84  Aligned_cols=121  Identities=21%  Similarity=0.279  Sum_probs=110.8

Q ss_pred             CCCCchHHHHHHHHc---CCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          238 GNDLKMDAIHAFARE---GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY  314 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~---g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~  314 (363)
                      .+..|.||||+|+..   +..+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+
T Consensus       207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~  286 (351)
T 3utm_A          207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR  286 (351)
T ss_dssp             CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            345678999999998   55899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC-chHHHHh
Q 043342          315 AVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD-WPWMLHA  358 (363)
Q Consensus       315 A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~-~~~~~~~  358 (363)
                      |+..|+.+++++|+++|++++.+|..|+||+|+|... .+|+.+.
T Consensus       287 A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~~~~~~l~~~  331 (351)
T 3utm_A          287 AALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSES  331 (351)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSCHHHHHHHHHC
T ss_pred             HHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhhHHHHHHHHhc
Confidence            9999999999999999999999999999999999666 4555543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.90  E-value=3.8e-24  Score=183.58  Aligned_cols=142  Identities=22%  Similarity=0.212  Sum_probs=119.1

Q ss_pred             HHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHH
Q 043342          171 WQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAF  249 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A  249 (363)
                      .+..+..|.++++.| ..+..++++.|+..+.+                                .+..+..|.||||+|
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------------------------~~~~~~~g~t~L~~A   76 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGAD--------------------------------PHILAKERESALSLA   76 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC--------------------------------TTCCCTTCCCHHHHH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--------------------------------chhhcccCCCHHHHH
Confidence            455567788888875 44677778777764321                                233456788999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 043342          250 AREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK  329 (363)
Q Consensus       250 a~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  329 (363)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (172)
T 3v30_A           77 STGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN  156 (172)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcH
Q 043342          330 QNADIGMKDNDGNSP  344 (363)
Q Consensus       330 ~Gad~~~~d~~G~Tp  344 (363)
                      +|+++..++..|.||
T Consensus       157 ~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          157 HILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHSCC-------
T ss_pred             HHHHHhcccCCCCCC
Confidence            999999999999988

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.90  E-value=1.2e-23  Score=180.40  Aligned_cols=141  Identities=31%  Similarity=0.394  Sum_probs=126.1

Q ss_pred             CCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHHH
Q 043342          179 AMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDN  257 (363)
Q Consensus       179 ~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~  257 (363)
                      .++++.| ..+.+++++.|+..+.+                                .+..+..|.||||+|+..|+.++
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll~~g~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~~   62 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILMANGAD--------------------------------VNAEDASGWTPLHLAAFNGHLEI   62 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCC--------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCC--------------------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence            3456664 45778888888764321                                23345678999999999999999


Q ss_pred             HHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 043342          258 LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMK  337 (363)
Q Consensus       258 v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~  337 (363)
                      +++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus        63 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  142 (169)
T 2y1l_E           63 VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ  142 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHhcC
Q 043342          338 DNDGNSPCHVCESD  351 (363)
Q Consensus       338 d~~G~TpL~~A~~~  351 (363)
                      |..|.||||+|+.+
T Consensus       143 ~~~g~t~l~~A~~~  156 (169)
T 2y1l_E          143 DKFGKTAFDISIDN  156 (169)
T ss_dssp             CTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHh
Confidence            99999999999866

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.90  E-value=2.6e-23  Score=193.77  Aligned_cols=178  Identities=16%  Similarity=0.146  Sum_probs=146.3

Q ss_pred             HHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHH
Q 043342          171 WQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIH  247 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh  247 (363)
                      .+..+..|.|+++.| ..+..++++.|+..+.+ ....+..|.++++.+...+...  .++.....+.+..+..|.||||
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~  130 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLF  130 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            345567788999986 45788889998887654 3346778889999888777543  2333334556677888899999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 043342          248 AFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFL  327 (363)
Q Consensus       248 ~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~L  327 (363)
                      +|+..|+.+++++|++.|++++..+ .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  209 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL  209 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            9999999999999999998887644 489999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          328 VKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       328 l~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +++|++++. |..|.||||+|+..
T Consensus       210 l~~ga~~~~-~~~g~t~L~~A~~~  232 (285)
T 3d9h_A          210 LESGADVNQ-GKGQDSPLHAVVRT  232 (285)
T ss_dssp             HHTTCCTTC-CBTTBCHHHHHHHT
T ss_pred             HHCCCCCCC-CCCCCCHHHHHHHc
Confidence            999999984 88899999999866

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.90  E-value=2.1e-23  Score=187.11  Aligned_cols=141  Identities=21%  Similarity=0.297  Sum_probs=126.3

Q ss_pred             CcchhhhhcCCCCCc---ccccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCC-----ccCCCCCChHHHHH
Q 043342          211 GQEDAASTDSKAPMG---PVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSV-----NLRDSEGRAPLHWA  282 (363)
Q Consensus       211 g~~~~~~a~~~~~~~---~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~v-----n~~d~~g~TpLh~A  282 (363)
                      |.++++.+...+...   .++...+.+.+..+..|.||||+|+..|+.+++++|++.|+++     +.+|..|.||||+|
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A   82 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA   82 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence            567888887777543   3444446667778899999999999999999999999999886     66778899999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCC-------------CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHh
Q 043342          283 VDRGHLNISELLVSKNADVNAKDN-------------EGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE  349 (363)
Q Consensus       283 ~~~g~~~iv~~Ll~~gadin~~d~-------------~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~  349 (363)
                      +..|+.+++++|+++|++++.++.             .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~  162 (232)
T 2rfa_A           83 VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI  162 (232)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999998876             7999999999999999999999999999999999999999998


Q ss_pred             cC
Q 043342          350 SD  351 (363)
Q Consensus       350 ~~  351 (363)
                      ..
T Consensus       163 ~~  164 (232)
T 2rfa_A          163 LQ  164 (232)
T ss_dssp             TC
T ss_pred             Hc
Confidence            76

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.90  E-value=9.6e-24  Score=189.06  Aligned_cols=180  Identities=21%  Similarity=0.281  Sum_probs=156.0

Q ss_pred             HHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHH
Q 043342          172 QAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHA  248 (363)
Q Consensus       172 ~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~  248 (363)
                      +..+..|.++++.| ..+..++++.|+..+..........+.++++.+...+...  .++.....+....+..|.||||+
T Consensus        36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  115 (240)
T 3eu9_A           36 RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHL  115 (240)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            33455688999986 4578899999999888777666677889999887776443  23333445556678889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCC-HHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHH
Q 043342          249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGH-LNISELLVSKNADVNAKDN-EGQTPLHYAVVCDREAIAQF  326 (363)
Q Consensus       249 Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~-~~iv~~Ll~~gadin~~d~-~G~TpLh~A~~~g~~~iv~~  326 (363)
                      |+..|+.+++++|+++|++++.++..|.||||+|+..++ ..++++|+..|++++..+. .|.||||+|+..|+.+++++
T Consensus       116 A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  195 (240)
T 3eu9_A          116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL  195 (240)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999997776 8899999999999999997 99999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          327 LVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       327 Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+++|++++.+|..|.||||+|+..
T Consensus       196 Ll~~g~~~~~~~~~g~t~l~~A~~~  220 (240)
T 3eu9_A          196 LLEAGANVDAQNIKGESALDLAKQR  220 (240)
T ss_dssp             HHHHTCCTTCBCTTSCBHHHHHHHT
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            9999999999999999999999877

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.89  E-value=1.5e-23  Score=176.67  Aligned_cols=114  Identities=29%  Similarity=0.465  Sum_probs=109.3

Q ss_pred             ccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 043342          236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA  315 (363)
Q Consensus       236 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A  315 (363)
                      +..+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        30 ~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (156)
T 1bd8_A           30 DALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA  108 (156)
T ss_dssp             TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            4456678999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          316 VVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       316 ~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +..|+.+++++|+++ ++++.+|..|.||||+|+..
T Consensus       109 ~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~  143 (156)
T 1bd8_A          109 VQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             HHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHS
T ss_pred             HHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHc
Confidence            999999999999999 99999999999999999876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.89  E-value=5.3e-24  Score=198.50  Aligned_cols=177  Identities=10%  Similarity=0.027  Sum_probs=151.9

Q ss_pred             HHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccccccCCCCchHHHH
Q 043342          171 WQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLKMDAIH  247 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g~t~Lh  247 (363)
                      .+..+..|.||++.| ..+..++++.|+..+.+   +...+|.++++.+...+....  ++...+.+.+..+..|.||||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL---KNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY  100 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG---GSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence            345567789999986 45788999999986554   344468999999988876542  333345556677889999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCccCCCCC-ChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 043342          248 AFAREGDMDNLLKCIENGVSVNLRDSEG-RAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQF  326 (363)
Q Consensus       248 ~Aa~~g~~~~v~~LL~~g~~vn~~d~~g-~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~  326 (363)
                      +|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|+++... ..|+||||+|+..|+.+++++
T Consensus       101 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~  179 (285)
T 3kea_A          101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMIL  179 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHH
Confidence            9999999999999999999999999999 89999999999999999999999887332 289999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCcH-HHHHhcC
Q 043342          327 LVKQNADIGMKDNDGNSP-CHVCESD  351 (363)
Q Consensus       327 Ll~~Gad~~~~d~~G~Tp-L~~A~~~  351 (363)
                      |+++|++++.+|..|+|| ||+|+..
T Consensus       180 Ll~~gad~n~~~~~g~t~~L~~A~~~  205 (285)
T 3kea_A          180 LLDYMTSTNTNNSLLFIPDIKLAIDN  205 (285)
T ss_dssp             HHHHHHHTCTTCCCBCCTTHHHHHHH
T ss_pred             HHHcCCCCCcccCCCCChHHHHHHHc
Confidence            999999999999999998 9999865

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=4.1e-23  Score=189.46  Aligned_cols=180  Identities=21%  Similarity=0.201  Sum_probs=151.6

Q ss_pred             HHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccccccC---------
Q 043342          171 WQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESG---------  238 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~---------  238 (363)
                      .+..+..|.+|++.| ..+..++++.|+..+.... ..+..+.++++.+...+....  ++..........         
T Consensus        65 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  143 (285)
T 1wdy_A           65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER  143 (285)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHh
Confidence            334456788999986 5578899999998765443 356778899998877765432  222222222222         


Q ss_pred             -CCCchHHHHHHHHcCCHHHHHHHHHc-CCCCccCCCCCChHHHHHHHcCC----HHHHHHHHhCCCCCCCCCCCCCcHH
Q 043342          239 -NDLKMDAIHAFAREGDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRGH----LNISELLVSKNADVNAKDNEGQTPL  312 (363)
Q Consensus       239 -~~~g~t~Lh~Aa~~g~~~~v~~LL~~-g~~vn~~d~~g~TpLh~A~~~g~----~~iv~~Ll~~gadin~~d~~G~TpL  312 (363)
                       +..|.||||+|+..|+.+++++|++. |++++.++..|+||||+|+..++    .+++++|+++|++++.+|..|+|||
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L  223 (285)
T 1wdy_A          144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  223 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence             66789999999999999999999997 99999999999999999999999    9999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHhcC
Q 043342          313 HYAVVCDREAIAQFLVK-QNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       313 h~A~~~g~~~iv~~Ll~-~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+|+..|+.+++++|++ +|++++.+|..|.||||+|+..
T Consensus       224 ~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~  263 (285)
T 1wdy_A          224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHc
Confidence            99999999999999999 8999999999999999999875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.89  E-value=2.3e-23  Score=197.06  Aligned_cols=180  Identities=21%  Similarity=0.201  Sum_probs=152.8

Q ss_pred             HHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHH
Q 043342          171 WQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIH  247 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh  247 (363)
                      .+..+..|.||++.| ..++.++++.|+..+.+. ...+..+.++++.+...+...  .++.....+.+..+..|.||||
T Consensus        51 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~  129 (351)
T 3utm_A           51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH  129 (351)
T ss_dssp             CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            344466789999986 557899999999876654 346678999999888877543  2333344556677888999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCccCC------------------------------------------------------C
Q 043342          248 AFAREGDMDNLLKCIENGVSVNLRD------------------------------------------------------S  273 (363)
Q Consensus       248 ~Aa~~g~~~~v~~LL~~g~~vn~~d------------------------------------------------------~  273 (363)
                      +|+..|+.+++++|+++|++++..+                                                      .
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  209 (351)
T 3utm_A          130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ  209 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCC
Confidence            9999999999999999999887644                                                      4


Q ss_pred             CCChHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhc
Q 043342          274 EGRAPLHWAVDR---GHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       274 ~g~TpLh~A~~~---g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      .|.||||+|+..   +..+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus       210 ~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~  289 (351)
T 3utm_A          210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL  289 (351)
T ss_dssp             TCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            567999999998   55899999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 043342          351 D  351 (363)
Q Consensus       351 ~  351 (363)
                      .
T Consensus       290 ~  290 (351)
T 3utm_A          290 A  290 (351)
T ss_dssp             H
T ss_pred             c
Confidence            5

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.89  E-value=4.1e-23  Score=187.36  Aligned_cols=109  Identities=30%  Similarity=0.447  Sum_probs=104.7

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 043342          240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD  319 (363)
Q Consensus       240 ~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g  319 (363)
                      ..+.|+||.|+..|+.++++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~  114 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN  114 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCC-cHHHHH
Q 043342          320 REAIAQFLVKQNADIGMKDNDGN-SPCHVC  348 (363)
Q Consensus       320 ~~~iv~~Ll~~Gad~~~~d~~G~-TpL~~A  348 (363)
                      +.+++++|+++|++++.++..|. ||||+|
T Consensus       115 ~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B          115 NVQVCKFLVESGAAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred             CHHHHHHHHHcCCCcceecCCCCcchHHHH
Confidence            99999999999999999998877 999999

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.89  E-value=3.2e-24  Score=205.91  Aligned_cols=181  Identities=18%  Similarity=0.166  Sum_probs=151.1

Q ss_pred             hHHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHH
Q 043342          170 KWQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHA  248 (363)
Q Consensus       170 k~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~  248 (363)
                      ..+..+..|.++++.| ..+++++|+.|+..+.+. ...+..+.++++.++..+....+-..+.......+..|.||||+
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~   90 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL   90 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH
Confidence            3445566778899985 568999999999877544 44677899999988887755432222222223344578999999


Q ss_pred             HHHcCCHHHHHHHHHc----CCCCcc-----------------CCCCCChHHHHHHHcC--CHHHHHHHHhCCCCCCCCC
Q 043342          249 FAREGDMDNLLKCIEN----GVSVNL-----------------RDSEGRAPLHWAVDRG--HLNISELLVSKNADVNAKD  305 (363)
Q Consensus       249 Aa~~g~~~~v~~LL~~----g~~vn~-----------------~d~~g~TpLh~A~~~g--~~~iv~~Ll~~gadin~~d  305 (363)
                      |+..|+.+++++|++.    |.+++.                 ++..|.||||+|+..|  +.+++++|+++|++++.+|
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d  170 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD  170 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred             HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence            9999999999999998    777776                 8889999999999999  9999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHhcC
Q 043342          306 NEGQTPLHYAVVCDREAIAQFLVKQNAD-----IGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       306 ~~G~TpLh~A~~~g~~~iv~~Ll~~Gad-----~~~~d~~G~TpL~~A~~~  351 (363)
                      ..|+||||+|+..|+.+++++|+++|++     ++.+|..|+||||+|+..
T Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~  221 (364)
T 3ljn_A          171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI  221 (364)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHc
Confidence            9999999999999999999999999999     999999999999999876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=2.3e-23  Score=176.52  Aligned_cols=141  Identities=26%  Similarity=0.384  Sum_probs=124.1

Q ss_pred             CCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHH
Q 043342          178 GAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMD  256 (363)
Q Consensus       178 g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~  256 (363)
                      ..++++.| ..+..++++.|+..+..                                .+..+..|.||||+|+. |+.+
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~--------------------------------~~~~~~~g~t~L~~A~~-~~~~   51 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVN--------------------------------VNAQNGFGRTALQVMKL-GNPE   51 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCC--------------------------------TTCCCTTSCCHHHHCCS-SCHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCC--------------------------------ccccCccCccHHHHHHc-CcHH
Confidence            34566664 55778888888763321                                23345678899999999 9999


Q ss_pred             HHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CC
Q 043342          257 NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD-IG  335 (363)
Q Consensus       257 ~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad-~~  335 (363)
                      ++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++
T Consensus        52 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  131 (162)
T 1ihb_A           52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG  131 (162)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998 69


Q ss_pred             CCCCCCCcHHHHHhcC
Q 043342          336 MKDNDGNSPCHVCESD  351 (363)
Q Consensus       336 ~~d~~G~TpL~~A~~~  351 (363)
                      .+|..|.||||+|+..
T Consensus       132 ~~~~~g~t~l~~A~~~  147 (162)
T 1ihb_A          132 HRNHKGDTACDLARLY  147 (162)
T ss_dssp             CCCTTSCCHHHHHHHT
T ss_pred             CcCCCCCcHHHHHHHc
Confidence            9999999999999876

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.89  E-value=3.6e-24  Score=203.68  Aligned_cols=174  Identities=13%  Similarity=0.116  Sum_probs=137.6

Q ss_pred             hhHHH-HHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCC------CCcccccccccccccCCC
Q 043342          169 AKWQA-WQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKA------PMGPVFSSFAYEEESGND  240 (363)
Q Consensus       169 ak~~a-w~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~------~~~~ll~~~~~~~~~~~~  240 (363)
                      +..+. .+..|.||+|.| ..++.++|+.|+..+.+.. ..+..|.|+++.+...+      .+..++..+....+..+.
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~  199 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS  199 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC
Confidence            44455 677899999986 5578899999998876554 57778999999888754      344566666566777888


Q ss_pred             CchHHHHHHHH----cCCHHHHHHHHHc--------------------CCCCccCCCCCChHHHHHHHcCCHHHHHHHHh
Q 043342          241 LKMDAIHAFAR----EGDMDNLLKCIEN--------------------GVSVNLRDSEGRAPLHWAVDRGHLNISELLVS  296 (363)
Q Consensus       241 ~g~t~Lh~Aa~----~g~~~~v~~LL~~--------------------g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~  296 (363)
                      .|.||||+|+.    .|+.+++++|++.                    |++++.++..|+||||+|+.      +++|++
T Consensus       200 ~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~  273 (327)
T 1sw6_A          200 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIA  273 (327)
T ss_dssp             TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHH
T ss_pred             CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHH
Confidence            99999999999    8999999999876                    88899999999999999985      888888


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          297 KNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       297 ~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +  ++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+
T Consensus       274 ~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          274 N--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             H--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             h--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence            8  6889999999999999999999999999999999999999999999999753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.2e-22  Score=164.11  Aligned_cols=111  Identities=37%  Similarity=0.645  Sum_probs=107.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 043342          241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR  320 (363)
Q Consensus       241 ~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~  320 (363)
                      .|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          321 EAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       321 ~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .+++++|+++|++++.+|..|.||||+|+..
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~  111 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARN  111 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999865

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=2.1e-24  Score=189.37  Aligned_cols=112  Identities=14%  Similarity=0.158  Sum_probs=103.6

Q ss_pred             CCchHHHHHHHHcCCH----HHHHHHHHcCCCCccCCCCCChHHHHHHHcCC------HHHHHHHHhCCCCCCCCCCCCC
Q 043342          240 DLKMDAIHAFAREGDM----DNLLKCIENGVSVNLRDSEGRAPLHWAVDRGH------LNISELLVSKNADVNAKDNEGQ  309 (363)
Q Consensus       240 ~~g~t~Lh~Aa~~g~~----~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~------~~iv~~Ll~~gadin~~d~~G~  309 (363)
                      ..|+||||+|+..|+.    +++++||++|+++|.+|..|+||||+|+..++      .+++++|+++|+++|.+|..|+
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            4589999999999975    58999999999999999999999999999887      6789999999999999999999


Q ss_pred             -cHHHHHHHcC-----CHHHHHHHHh-CCCCCCCCCCCCCcHHHHHhcC
Q 043342          310 -TPLHYAVVCD-----REAIAQFLVK-QNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       310 -TpLh~A~~~g-----~~~iv~~Ll~-~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                       ||||+|+..+     +.+++++|++ +|++++.+|..|+||||+|++.
T Consensus       116 ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~  164 (186)
T 3t8k_A          116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC  164 (186)
T ss_dssp             BCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT
T ss_pred             chHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc
Confidence             9999999954     3569999999 9999999999999999999875

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=4.7e-23  Score=202.35  Aligned_cols=182  Identities=21%  Similarity=0.257  Sum_probs=111.3

Q ss_pred             hhHHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcc--cccccccccccCCCCchHH
Q 043342          169 AKWQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLKMDA  245 (363)
Q Consensus       169 ak~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g~t~  245 (363)
                      +.++..+..|.||++.| ..+++++|+.|+..+.+.. ..+..+.++++.++..+....  ++.....+.+..+..|.||
T Consensus         5 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~   83 (437)
T 1n11_A            5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP   83 (437)
T ss_dssp             ----------CCHHHHHHHHTCHHHHHHHHHTTCCSC-CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH
T ss_pred             CCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Confidence            34455666677777764 4466777777776554332 244556667766665554321  2222233445556666777


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 043342          246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQ  325 (363)
Q Consensus       246 Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~  325 (363)
                      ||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+++++..+..|.||||+|+..|+.++++
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  163 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE  163 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence            77777777777777777777777777777777777777777777777777777766666666777777777777777777


Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          326 FLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       326 ~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|+++|++++..+..|.||||+|+..
T Consensus       164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~  189 (437)
T 1n11_A          164 LLLERDAHPNAAGKNGLTPLHVAVHH  189 (437)
T ss_dssp             HHHHTTCCTTCCCSSCCCHHHHHHHT
T ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHc
Confidence            77777777766666677777666654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.89  E-value=1.4e-23  Score=194.87  Aligned_cols=167  Identities=20%  Similarity=0.289  Sum_probs=136.4

Q ss_pred             HHhcCccccccccccccc-cccccCCCCcchhhhhcCCCCCc---ccccccccccccCCCCchHHHHHHH-----HcCCH
Q 043342          185 AMQKYIDIVTELYPTWAA-GSSLKSKRGQEDAASTDSKAPMG---PVFSSFAYEEESGNDLKMDAIHAFA-----REGDM  255 (363)
Q Consensus       185 A~~~yv~~v~~Ll~~~~~-~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~~~~~~~~~~g~t~Lh~Aa-----~~g~~  255 (363)
                      +..++...++.++..... ..+..+..|.|+++.+...+...   .++.....+.+..+..|.||||+|+     ..++.
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~  163 (276)
T 4hbd_A           84 LVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDI  163 (276)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhH
Confidence            445555665555543222 13345666777777776666432   3333333456677888999999999     66889


Q ss_pred             HHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCC
Q 043342          256 DNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK-QNADI  334 (363)
Q Consensus       256 ~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~Gad~  334 (363)
                      ++++.|++.|..++..+..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|++ +|+++
T Consensus       164 ~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~  243 (276)
T 4hbd_A          164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI  243 (276)
T ss_dssp             HHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT
T ss_pred             HHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             CCCCCCCCcHHHHHhcC
Q 043342          335 GMKDNDGNSPCHVCESD  351 (363)
Q Consensus       335 ~~~d~~G~TpL~~A~~~  351 (363)
                      +.+|..|+||||+|+..
T Consensus       244 ~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          244 SLTDRDGSTALMVALDA  260 (276)
T ss_dssp             TCCCTTSCCHHHHHHHH
T ss_pred             cCcCCCCCCHHHHHHHc
Confidence            99999999999999865

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.89  E-value=7.3e-24  Score=191.03  Aligned_cols=180  Identities=18%  Similarity=0.169  Sum_probs=151.4

Q ss_pred             HHHHHhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCCCCc---ccccccc-----cccccCCCC
Q 043342          171 WQAWQKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG---PVFSSFA-----YEEESGNDL  241 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~-----~~~~~~~~~  241 (363)
                      .+..+..|.||++.|. .+..++++.|+..+.+.. ..+..+.++++.+...+...   .++....     ......+..
T Consensus        38 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (236)
T 1ikn_D           38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN  116 (236)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC
Confidence            4556677999999864 578899999998776543 36678899999887776443   2333221     123567778


Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCccCCC-CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 043342          242 KMDAIHAFAREGDMDNLLKCIENGVSVNLRDS-EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR  320 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~  320 (363)
                      |.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus       117 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  196 (236)
T 1ikn_D          117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS  196 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCc
Confidence            99999999999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCC--CCCCCCCcHHHHHhcC
Q 043342          321 EAIAQFLVKQNADIG--MKDNDGNSPCHVCESD  351 (363)
Q Consensus       321 ~~iv~~Ll~~Gad~~--~~d~~G~TpL~~A~~~  351 (363)
                      .+++++|+++|++..  ..+..|.||.+.+.+.
T Consensus       197 ~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          197 TRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             hHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            999999999999876  8899999998876644

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=1e-22  Score=177.07  Aligned_cols=112  Identities=26%  Similarity=0.320  Sum_probs=107.9

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHH
Q 043342          239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD-NEGQTPLHYAVV  317 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d-~~G~TpLh~A~~  317 (363)
                      +..|.||||+|+..|+.++++.|++ |++++.+|..|+||||+|+..|+.+++++|+++|+++|.++ ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4578999999999999999999999 99999999999999999999999999999999999999998 899999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          318 CDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       318 ~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh
Confidence            9999999999999999999999999999999863

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=3.5e-23  Score=175.27  Aligned_cols=111  Identities=24%  Similarity=0.333  Sum_probs=70.0

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHH
Q 043342          239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQT-PLHYAVV  317 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~T-pLh~A~~  317 (363)
                      +..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+.
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence            344556666666666666666666666666666666666666654 56666666666666666666666666 6666666


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhc
Q 043342          318 CDREAIAQFLVKQNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       318 ~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      .|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  120 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE  120 (156)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            666666666666666666666666666666654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.88  E-value=1.1e-22  Score=186.52  Aligned_cols=188  Identities=25%  Similarity=0.307  Sum_probs=156.4

Q ss_pred             hhHHHH-HhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchH
Q 043342          169 AKWQAW-QKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMD  244 (363)
Q Consensus       169 ak~~aw-~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t  244 (363)
                      +..+.. +..|.++++.|. .+..++++.|+..+.... ..+..+.++++.+...+...  .++...+.+.+..+..|.|
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  107 (285)
T 1wdy_A           29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT  107 (285)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCB
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCC
Confidence            444544 566889999865 578899999998766543 35678889999887766443  2333334455667788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccC----------CCCCChHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcHHH
Q 043342          245 AIHAFAREGDMDNLLKCIENGVSVNLR----------DSEGRAPLHWAVDRGHLNISELLVSK-NADVNAKDNEGQTPLH  313 (363)
Q Consensus       245 ~Lh~Aa~~g~~~~v~~LL~~g~~vn~~----------d~~g~TpLh~A~~~g~~~iv~~Ll~~-gadin~~d~~G~TpLh  313 (363)
                      |||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|++. |++++.+|..|+||||
T Consensus       108 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  187 (285)
T 1wdy_A          108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI  187 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH
Confidence            999999999999999999999998877          77899999999999999999999988 9999999999999999


Q ss_pred             HHHHcCC----HHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC--chHHHH
Q 043342          314 YAVVCDR----EAIAQFLVKQNADIGMKDNDGNSPCHVCESD--WPWMLH  357 (363)
Q Consensus       314 ~A~~~g~----~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~--~~~~~~  357 (363)
                      +|+..++    .+++++|+++|++++.+|..|.||||+|+..  .+.++.
T Consensus       188 ~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  237 (285)
T 1wdy_A          188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR  237 (285)
T ss_dssp             HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            9999999    8999999999999999999999999999876  444443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.88  E-value=2.4e-22  Score=194.34  Aligned_cols=175  Identities=11%  Similarity=0.120  Sum_probs=148.8

Q ss_pred             HHhcCCCCHHHHHhcCccccccccccccccccccC-CCCcchhhhhcCCCCCcc---ccc-------ccccccccCCCCc
Q 043342          174 WQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKS-KRGQEDAASTDSKAPMGP---VFS-------SFAYEEESGNDLK  242 (363)
Q Consensus       174 w~~~g~t~l~~A~~~yv~~v~~Ll~~~~~~~~~~~-~~g~~~~~~a~~~~~~~~---ll~-------~~~~~~~~~~~~g  242 (363)
                      -+..|.++++.|.....++++.|+..   .....+ ..|.|+++.++..+....   ++.       ..+.+.+..+..|
T Consensus        90 ~~~~g~t~L~~Aa~~~~~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g  166 (373)
T 2fo1_E           90 PEPESPIKLHTEAAGSYAITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE  166 (373)
T ss_dssp             ----CCCHHHHHHHSSSCCCSCCSTT---TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS
T ss_pred             CCCCCccHHHHHhcCCchHHHHhccc---cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCC
Confidence            35678999999888878888888753   233334 689999999888775532   221       3455667788899


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCC---CCCCCCCCCCCcHHHHHHHcC
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN---ADVNAKDNEGQTPLHYAVVCD  319 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g---adin~~d~~G~TpLh~A~~~g  319 (363)
                      .||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.+   ++++.+|..|.||||+|+..+
T Consensus       167 ~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~  246 (373)
T 2fo1_E          167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE  246 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred             CCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999998   899999999999999999998


Q ss_pred             ---CHHHHHHHHhCCCCCCC--------CCCCCCcHHHHHhcC
Q 043342          320 ---REAIAQFLVKQNADIGM--------KDNDGNSPCHVCESD  351 (363)
Q Consensus       320 ---~~~iv~~Ll~~Gad~~~--------~d~~G~TpL~~A~~~  351 (363)
                         +.+++++|+++|++++.        +|..|.||||+|+..
T Consensus       247 ~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~  289 (373)
T 2fo1_E          247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV  289 (373)
T ss_dssp             STTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSS
T ss_pred             CcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHh
Confidence               89999999999999986        677999999999876

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.88  E-value=2.6e-22  Score=175.90  Aligned_cols=142  Identities=14%  Similarity=0.203  Sum_probs=126.9

Q ss_pred             CCcchhhhhcCCCCCc---ccccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcC
Q 043342          210 RGQEDAASTDSKAPMG---PVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRG  286 (363)
Q Consensus       210 ~g~~~~~~a~~~~~~~---~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g  286 (363)
                      .+.++++.++..+...   .++.....+.+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4566777777666443   4455555566778889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHhcC
Q 043342          287 HLNISELLV-SKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN-ADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       287 ~~~iv~~Ll-~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G-ad~~~~d~~G~TpL~~A~~~  351 (363)
                      +.+++++|+ ..+++++.+|..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  150 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL  150 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHS
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHh
Confidence            999999999 668899999999999999999999999999999999 99999999999999999853

>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}

Probab=99.88  E-value=3e-23  Score=165.34  Aligned_cols=92  Identities=33%  Similarity=0.603  Sum_probs=86.6

Q ss_pred             cchHHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcC
Q 043342          110 STELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKY  189 (363)
Q Consensus       110 ~~~l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~y  189 (363)
                      .++|+++|+.|+++|++++.+|..+|+++++|+||+||||||+|+|+.++|++|++.+++||+||+++++|+.++||+.|
T Consensus        21 ~~dLe~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~Y  100 (119)
T 3flv_A           21 QSMHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAY  100 (119)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHccCCCHHHHHHHH
Confidence            46899999999999999998877789999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccc
Q 043342          190 IDIVTELYPTWA  201 (363)
Q Consensus       190 v~~v~~Ll~~~~  201 (363)
                      |+++..|++...
T Consensus       101 I~~v~~l~~~~~  112 (119)
T 3flv_A          101 VEEMKKIIETMP  112 (119)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHhhCC
Confidence            999999987543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=1.2e-22  Score=181.66  Aligned_cols=114  Identities=26%  Similarity=0.454  Sum_probs=109.7

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHH
Q 043342          238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK-NADVNAKDNEGQTPLHYAV  316 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-gadin~~d~~G~TpLh~A~  316 (363)
                      .+..|.||||+||..|+.++++.|++.|++++.+|..|+||||+||..|+.+++++|++. |+++|.+|..|+||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            355678999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          317 VCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       317 ~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  183 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNA  183 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSH
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcch
Confidence            99999999999999999999999999999999864

>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1

Probab=99.88  E-value=4.1e-23  Score=158.21  Aligned_cols=87  Identities=32%  Similarity=0.739  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCccc
Q 043342          113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI  192 (363)
Q Consensus       113 l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~~  192 (363)
                      |++.|..|+++|++++.  ..+++++++|+||+||||||+|+|+.++|++|++.+++||+||.++++|+.++||+.||++
T Consensus         2 l~~~F~~A~~~v~~l~~--~~~~~~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI~~   79 (89)
T 1hbk_A            2 MAQVFEECVSFINGLPR--TINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDI   79 (89)
T ss_dssp             HHHHHHHHHHHHHHSCT--TCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCC--cCCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            68999999999998764  2479999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccc
Q 043342          193 VTELYPTWA  201 (363)
Q Consensus       193 v~~Ll~~~~  201 (363)
                      |..|++.|.
T Consensus        80 v~~l~~~~~   88 (89)
T 1hbk_A           80 VSEIFPYWQ   88 (89)
T ss_dssp             HHHHCTTTT
T ss_pred             HHHHccccc
Confidence            999998775

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.88  E-value=1.8e-22  Score=176.26  Aligned_cols=117  Identities=26%  Similarity=0.432  Sum_probs=112.8

Q ss_pred             cccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          235 EESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY  314 (363)
Q Consensus       235 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~  314 (363)
                      .+..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          315 AVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       315 A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  144 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY  144 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999999999864

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.87  E-value=4.1e-22  Score=169.94  Aligned_cols=111  Identities=25%  Similarity=0.384  Sum_probs=108.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 043342          241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR  320 (363)
Q Consensus       241 ~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~  320 (363)
                      .|.||||.|+..|+.+++++|++.+.+++.+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          321 EAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       321 ~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .+++++|+++|++++.+|..|.||||+|+..
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  112 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG  112 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999876

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=3.3e-22  Score=182.30  Aligned_cols=111  Identities=26%  Similarity=0.334  Sum_probs=107.2

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHH
Q 043342          239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD-NEGQTPLHYAVV  317 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d-~~G~TpLh~A~~  317 (363)
                      +..|.||||+|++.|+.++++.|++ |+++|.+|..|+||||+||..|+.+++++|+++|+++|.++ ..|+||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            4568999999999999999999999 99999999999999999999999999999999999999998 889999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhc
Q 043342          318 CDREAIAQFLVKQNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       318 ~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      .|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            999999999999999999999999999999984

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.87  E-value=1e-22  Score=185.67  Aligned_cols=113  Identities=20%  Similarity=0.275  Sum_probs=105.7

Q ss_pred             CCCCchHHHHHHHHc---CCHHHHHHHHHcCCCCccC-----------CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 043342          238 GNDLKMDAIHAFARE---GDMDNLLKCIENGVSVNLR-----------DSEGRAPLHWAVDRGHLNISELLVSKNADVNA  303 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~---g~~~~v~~LL~~g~~vn~~-----------d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~  303 (363)
                      .+..|.||||+|+..   |+.+++++|++.|++++..           |..|.||||+|+..|+.+++++|+++|+++|.
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  118 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL  118 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            577899999999999   9999999999998776533           36799999999999999999999999999999


Q ss_pred             CCCC-------------CCcHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHhc
Q 043342          304 KDNE-------------GQTPLHYAVVCDREAIAQFLVK---QNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       304 ~d~~-------------G~TpLh~A~~~g~~~iv~~Ll~---~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      ++..             |+||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.
T Consensus       119 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM  181 (256)
T ss_dssp             CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence            9987             9999999999999999999999   999999999999999999986

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.87  E-value=4e-22  Score=178.49  Aligned_cols=176  Identities=21%  Similarity=0.248  Sum_probs=149.9

Q ss_pred             HhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc---ccccccccccccCCCCchHHHHHHH
Q 043342          175 QKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG---PVFSSFAYEEESGNDLKMDAIHAFA  250 (363)
Q Consensus       175 ~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~~~~~~~~~~g~t~Lh~Aa  250 (363)
                      +..+.++++.| ..+..++++.|+..+.+. ...+..+.++++.+...+...   .++..........+..|.||||+|+
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~   84 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT   84 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHH
Confidence            34567888886 557889999999877553 345677899999887777443   3444444344445566899999999


Q ss_pred             HcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHh
Q 043342          251 REGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR-EAIAQFLVK  329 (363)
Q Consensus       251 ~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~-~~iv~~Ll~  329 (363)
                      ..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++ ..++++|++
T Consensus        85 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~  164 (240)
T 3eu9_A           85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT  164 (240)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999997776 799999999


Q ss_pred             CCCCCCCCCC-CCCcHHHHHhcC
Q 043342          330 QNADIGMKDN-DGNSPCHVCESD  351 (363)
Q Consensus       330 ~Gad~~~~d~-~G~TpL~~A~~~  351 (363)
                      +|++++..+. .|.||||+|+..
T Consensus       165 ~~~~~~~~~~~~g~t~L~~A~~~  187 (240)
T 3eu9_A          165 FNVSVNLGDKYHKNTALHWAVLA  187 (240)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHH
T ss_pred             cCCCcchhhccCCCcHHHHHHHc
Confidence            9999999997 999999999865

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.87  E-value=1.3e-21  Score=167.65  Aligned_cols=114  Identities=35%  Similarity=0.506  Sum_probs=108.4

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 043342          238 GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVV  317 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~  317 (363)
                      ....+.++||.|++.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          318 CDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       318 ~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  123 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF  123 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999999876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.87  E-value=3.7e-22  Score=169.03  Aligned_cols=133  Identities=26%  Similarity=0.376  Sum_probs=111.7

Q ss_pred             hhHHHHHhcCCCCHHHHHhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHH
Q 043342          169 AKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHA  248 (363)
Q Consensus       169 ak~~aw~~~g~t~l~~A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~  248 (363)
                      +..+..+..|.++++.|..+..++++.|+..+.                                +.+..+..|.||||+
T Consensus        29 ~~~~~~~~~g~t~L~~A~~~~~~~v~~Ll~~g~--------------------------------~~~~~~~~g~t~L~~   76 (162)
T 1ihb_A           29 VNVNAQNGFGRTALQVMKLGNPEIARRLLLRGA--------------------------------NPDLKDRTGFAVIHD   76 (162)
T ss_dssp             CCTTCCCTTSCCHHHHCCSSCHHHHHHHHHTTC--------------------------------CTTCCCTTSCCHHHH
T ss_pred             CCccccCccCccHHHHHHcCcHHHHHHHHHcCC--------------------------------CCCCCCCCCCCHHHH
Confidence            344455566677777665566666666665322                                223456678999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 043342          249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD-VNAKDNEGQTPLHYAVVCDREAIAQFL  327 (363)
Q Consensus       249 Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad-in~~d~~G~TpLh~A~~~g~~~iv~~L  327 (363)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus        77 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  156 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  156 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998 699999999999999999999999999


Q ss_pred             HhCCCC
Q 043342          328 VKQNAD  333 (363)
Q Consensus       328 l~~Gad  333 (363)
                      +++||+
T Consensus       157 l~~GAd  162 (162)
T 1ihb_A          157 QANGAG  162 (162)
T ss_dssp             HHTC--
T ss_pred             HHhCCC
Confidence            999986

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.87  E-value=7.9e-22  Score=178.30  Aligned_cols=115  Identities=24%  Similarity=0.380  Sum_probs=107.1

Q ss_pred             cCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 043342          237 SGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV  316 (363)
Q Consensus       237 ~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~  316 (363)
                      ..+..+.|+||.|+..|+.+++++|++.|++++.+|..|+||||+||..|+.+++++|++.|+++|.+|..|+||||+|+
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~   95 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA   95 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHH--hcC
Q 043342          317 VCDREAIAQFLVKQNADIGMKD-NDGNSPCHVC--ESD  351 (363)
Q Consensus       317 ~~g~~~iv~~Ll~~Gad~~~~d-~~G~TpL~~A--~~~  351 (363)
                      ..|+.+++++|+++|++++.++ ..|+||||+|  +..
T Consensus        96 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~  133 (229)
T 2vge_A           96 SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE  133 (229)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTST
T ss_pred             HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhc
Confidence            9999999999999999999986 5999999998  544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=8.4e-22  Score=152.17  Aligned_cols=93  Identities=38%  Similarity=0.605  Sum_probs=89.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 043342          241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR  320 (363)
Q Consensus       241 ~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~  320 (363)
                      .|+||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCC
Q 043342          321 EAIAQFLVKQNAD  333 (363)
Q Consensus       321 ~~iv~~Ll~~Gad  333 (363)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999985

>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=7e-23  Score=162.17  Aligned_cols=92  Identities=37%  Similarity=0.702  Sum_probs=85.5

Q ss_pred             cchHHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcC
Q 043342          110 STELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKY  189 (363)
Q Consensus       110 ~~~l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~y  189 (363)
                      .++|++.|..|+.+|+.++.    +++++++|+||+||||||+|+|+.++|++|++.+++||+||+++++|+.++||+.|
T Consensus         5 ~~~l~~~F~~A~~~vk~l~~----~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeAm~~Y   80 (109)
T 2cop_A            5 SSGLAELFEKAAAHLQGLIQ----VASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEY   80 (109)
T ss_dssp             CCCSHHHHHHHHHHHTTSTT----TSCHHHHHHHHHHHHHHHTCSCCSCCCCSSCHHHHHHHHHHHSCTTCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHccc----CCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            35588999999999998753    69999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccc
Q 043342          190 IDIVTELYPTWAAGSS  205 (363)
Q Consensus       190 v~~v~~Ll~~~~~~~~  205 (363)
                      |++|..|++.|.....
T Consensus        81 I~lv~~l~~~~~~~~~   96 (109)
T 2cop_A           81 IAVVKKLDPGWNPQIP   96 (109)
T ss_dssp             HHHHHHHCTTCCCCCC
T ss_pred             HHHHHHHhhhhcccch
Confidence            9999999999876554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.87  E-value=7.4e-23  Score=173.26  Aligned_cols=143  Identities=17%  Similarity=0.143  Sum_probs=109.5

Q ss_pred             HHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHH
Q 043342          173 AWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAR  251 (363)
Q Consensus       173 aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~  251 (363)
                      ...+.+.++++.| ..+..++++.|+..+.+                                .+..+..|.||||+|+ 
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------------------------------~~~~~~~g~t~L~~A~-   53 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGAN--------------------------------PNAPNSYGRRPIQVMM-   53 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC--------------------------------TTCCCSSSCCTTTSSC-
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCC--------------------------------CCCCCCCCCCHHHHHH-
Confidence            4566778888875 45778888888764321                                2334567889999986 


Q ss_pred             cCCHHHHHHHHHcCCCCccCCCCCCh-HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 043342          252 EGDMDNLLKCIENGVSVNLRDSEGRA-PLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ  330 (363)
Q Consensus       252 ~g~~~~v~~LL~~g~~vn~~d~~g~T-pLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  330 (363)
                      .|+.+++++|+++|++++.+|..|+| |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        54 ~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~  133 (156)
T 1bi7_B           54 MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  133 (156)
T ss_dssp             TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc
Confidence            89999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHH
Q 043342          331 NADIGMKDNDGNSPCHVC  348 (363)
Q Consensus       331 Gad~~~~d~~G~TpL~~A  348 (363)
                      |++++.+|..|.||.+-+
T Consensus       134 ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          134 AGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             C-----------------
T ss_pred             CCCCCccCcCcCcccccC
Confidence            999999999999998743

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.87  E-value=2.1e-22  Score=186.84  Aligned_cols=161  Identities=17%  Similarity=0.226  Sum_probs=138.3

Q ss_pred             HHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCC-----CCCc--ccccccccccccCCCCc
Q 043342          171 WQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSK-----APMG--PVFSSFAYEEESGNDLK  242 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~-----~~~~--~ll~~~~~~~~~~~~~g  242 (363)
                      .+..+..|.||++.| ..+..++++.|+..+.......+..|.++++.+...     +.+.  ..+...+......+..|
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            556678899999986 557899999999988766677888999999977732     2111  22222334455667789


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCH
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVS-KNADVNAKDNEGQTPLHYAVVCDRE  321 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~-~gadin~~d~~G~TpLh~A~~~g~~  321 (363)
                      .||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~  263 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS  263 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999999999999999999999999999999999999 8999999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 043342          322 AIAQFLVKQN  331 (363)
Q Consensus       322 ~iv~~Ll~~G  331 (363)
                      +++++|++++
T Consensus       264 ~iv~~Ll~~~  273 (276)
T 4hbd_A          264 EIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcc
Confidence            9999999864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.86  E-value=3.1e-22  Score=173.01  Aligned_cols=140  Identities=21%  Similarity=0.185  Sum_probs=119.8

Q ss_pred             hHHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHH
Q 043342          170 KWQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHA  248 (363)
Q Consensus       170 k~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~  248 (363)
                      ..+..+..|.++++.| ..+..++++.|+..+.                                +.+..+..|.||||+
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------------------------------~~~~~~~~g~t~L~~   78 (179)
T 3f6q_A           31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA--------------------------------RINVMNRGDDTPLHL   78 (179)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------------------------------CTTCCCTTCCCHHHH
T ss_pred             cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC--------------------------------CCCCcCCCCCCHHHH
Confidence            3445566677777765 3456677777765322                                223455678999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 043342          249 FAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV  328 (363)
Q Consensus       249 Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  328 (363)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+
T Consensus        79 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCC
Q 043342          329 KQNADIGMKDNDG  341 (363)
Q Consensus       329 ~~Gad~~~~d~~G  341 (363)
                      ++|++++..+..+
T Consensus       159 ~~g~~~~~~~~~~  171 (179)
T 3f6q_A          159 KMGQNLNRIPYKD  171 (179)
T ss_dssp             HTTCCCSCBCCCC
T ss_pred             HhhcCcccCCccc
Confidence            9999999877654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.86  E-value=9.7e-22  Score=186.60  Aligned_cols=114  Identities=28%  Similarity=0.340  Sum_probs=90.2

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHH-cCCCCccCCCCCChHHHHHHHcCC----HHHHHHHHhCCCCCCCCCCCCCcHH
Q 043342          238 GNDLKMDAIHAFAREGDMDNLLKCIE-NGVSVNLRDSEGRAPLHWAVDRGH----LNISELLVSKNADVNAKDNEGQTPL  312 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~g~~vn~~d~~g~TpLh~A~~~g~----~~iv~~Ll~~gadin~~d~~G~TpL  312 (363)
                      .+..|.||||+|+..|+.+++++||+ .|+++|.+|..|.|+||+++..+.    ..++++|+++|+++|.+|..|+|||
T Consensus       164 ~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L  243 (337)
T 4g8k_A          164 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  243 (337)
T ss_dssp             CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred             ccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            45567888888888888888888885 478888888888888887765443    3577888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHhcC
Q 043342          313 HYAVVCDREAIAQFLVKQ-NADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       313 h~A~~~g~~~iv~~Ll~~-Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+|+..|+.+++++|+.. |++++.+|.+|+||||+|+..
T Consensus       244 ~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~  283 (337)
T 4g8k_A          244 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  283 (337)
T ss_dssp             HHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHT
T ss_pred             HHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHc
Confidence            888888888888888864 788888888888888888765

>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0

Probab=99.86  E-value=1.1e-22  Score=159.78  Aligned_cols=87  Identities=29%  Similarity=0.503  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCccc
Q 043342          113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI  192 (363)
Q Consensus       113 l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~~  192 (363)
                      +++.|+.|+.+|++++.++..+++++++|+||+||||||+|+|+.++|++|++.+++||+||+++++|+.++||+.||++
T Consensus         4 ~~~~F~~A~~~vk~l~~~g~~~ps~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gmS~eeA~~~YI~~   83 (106)
T 3fp5_A            4 SKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEK   83 (106)
T ss_dssp             CHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            58999999999999987776789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc
Q 043342          193 VTELYPT  199 (363)
Q Consensus       193 v~~Ll~~  199 (363)
                      +..|++.
T Consensus        84 v~~l~~~   90 (106)
T 3fp5_A           84 LLEILKK   90 (106)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9999874

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.86  E-value=1.1e-22  Score=187.34  Aligned_cols=172  Identities=13%  Similarity=0.157  Sum_probs=131.5

Q ss_pred             HhcCCCCHHHHHh----cCccccccccccccccc----------cccCCCCcchhhhhcCCCCCc--ccccccccccccC
Q 043342          175 QKLGAMPPEEAMQ----KYIDIVTELYPTWAAGS----------SLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESG  238 (363)
Q Consensus       175 ~~~g~t~l~~A~~----~yv~~v~~Ll~~~~~~~----------~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~  238 (363)
                      +..|.||++.|..    +..++++.|+..+....          ...+..+.|+++.+...+...  .++...+.+.+..
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~  130 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA  130 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc
Confidence            4578899999874    78899999998754321          123457899999888777543  2222334444444


Q ss_pred             CC--------------CchHHHHHHHHcCCHHHHHHHHH---cCCCCccCCCCCChHHHHHHHcCC---------HHHHH
Q 043342          239 ND--------------LKMDAIHAFAREGDMDNLLKCIE---NGVSVNLRDSEGRAPLHWAVDRGH---------LNISE  292 (363)
Q Consensus       239 ~~--------------~g~t~Lh~Aa~~g~~~~v~~LL~---~g~~vn~~d~~g~TpLh~A~~~g~---------~~iv~  292 (363)
                      +.              .|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..|+         .++++
T Consensus       131 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~  210 (273)
T 2pnn_A          131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN  210 (273)
T ss_dssp             BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHH
Confidence            44              69999999999999999999999   999999999999999999999998         89999


Q ss_pred             HHHhCCCCCC-------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCCCCcHHH
Q 043342          293 LLVSKNADVN-------AKDNEGQTPLHYAVVCDREAIAQFLVKQNA-DIGMKDNDGNSPCH  346 (363)
Q Consensus       293 ~Ll~~gadin-------~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga-d~~~~d~~G~TpL~  346 (363)
                      +|+++|+++|       .+|..|+||||+|+..|+.+++++|+++|+ ++......+.+|-|
T Consensus       211 ~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            9999999997       489999999999999999999999999999 89888888877754

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=3e-22  Score=160.45  Aligned_cols=109  Identities=31%  Similarity=0.508  Sum_probs=103.1

Q ss_pred             cCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 043342          237 SGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV  316 (363)
Q Consensus       237 ~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~  316 (363)
                      ..+..|.|+||+||..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 043342          317 VCDREAIAQFLVKQNADIGMKDNDGNSPC  345 (363)
Q Consensus       317 ~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL  345 (363)
                      ..++.+++++|+++|++++.++..|.||-
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999999984

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.86  E-value=3.2e-21  Score=162.33  Aligned_cols=109  Identities=28%  Similarity=0.389  Sum_probs=104.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCH
Q 043342          242 KMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDRE  321 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~  321 (363)
                      ..++||.|++.|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            4689999999999999999999999876 588899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          322 AIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       322 ~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +++++|+++|++++.+|..|.||||+|+..
T Consensus        81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  110 (153)
T 1awc_B           81 NIVEVLLKHGADVNAKDMLKMTALHWATEH  110 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            999999999999999999999999999875

>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}

Probab=99.86  E-value=4.9e-23  Score=156.77  Aligned_cols=85  Identities=34%  Similarity=0.604  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCccc
Q 043342          113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI  192 (363)
Q Consensus       113 l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~~  192 (363)
                      |++.|+.|+++|++++    .+++++++|+||+||||||+|+|+.++|++|++.+++||+||.++++|+.++||+.||++
T Consensus         1 l~~~F~~A~~~v~~l~----~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeA~~~YI~~   76 (86)
T 1st7_A            1 VSQLFEEKAKAVNELP----TKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIAL   76 (86)
T ss_dssp             CHHHHHHHHHHHTSCS----SCCCHHHHHHHHHHHHHHHHCSCCCCCCCSSCHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcc----CCcCHHHHHHHHHHHHHHhhCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4789999999999875    369999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccc
Q 043342          193 VTELYPTWA  201 (363)
Q Consensus       193 v~~Ll~~~~  201 (363)
                      +..|++.|.
T Consensus        77 v~~l~~~~~   85 (86)
T 1st7_A           77 VDQLIAKYS   85 (86)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHhhhhc
Confidence            999988664

>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1

Probab=99.86  E-value=9.6e-23  Score=155.63  Aligned_cols=85  Identities=28%  Similarity=0.468  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCcc
Q 043342          112 ELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYID  191 (363)
Q Consensus       112 ~l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~  191 (363)
                      .|++.|+.|+++|++++    .+++++++|+||+||||||+|+|+.++|++|++.+++||+||+++++|+.++||+.||+
T Consensus         3 ~L~~~F~~A~~~vk~l~----~~p~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~g~s~eeA~~~Yi~   78 (89)
T 3epy_A            3 ALQADFDRAAEDVRKLK----ARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYIS   78 (89)
T ss_dssp             HHHHHHHHHHHHGGGCS----SCCCHHHHHHHHHHHHHHHTCSCCSCCTTTTCHHHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHHHHHHhhCCCCCCCCcccchHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            48999999999999875    36999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccc
Q 043342          192 IVTELYPTW  200 (363)
Q Consensus       192 ~v~~Ll~~~  200 (363)
                      ++..|++.+
T Consensus        79 ~v~~l~~ky   87 (89)
T 3epy_A           79 KAKELIEKY   87 (89)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhhhh
Confidence            999988753

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.86  E-value=2.9e-21  Score=164.32  Aligned_cols=114  Identities=28%  Similarity=0.398  Sum_probs=107.0

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHc-CCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 043342          238 GNDLKMDAIHAFAREGDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV  316 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~-g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~  316 (363)
                      .+..+.++||.|++.|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            456789999999999999999999985 5678888889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          317 VCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       317 ~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  118 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK  118 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc
Confidence            99999999999999999999999999999999876

>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}

Probab=99.86  E-value=1.5e-22  Score=159.22  Aligned_cols=91  Identities=33%  Similarity=0.559  Sum_probs=83.3

Q ss_pred             chHHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCc
Q 043342          111 TELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYI  190 (363)
Q Consensus       111 ~~l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv  190 (363)
                      .++++.|+.|+++|++++..|..+++++++|+||+||||||+|+|+.++|++|++.+++||+||.++++|+.++||+.|+
T Consensus         6 ~~l~~~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI   85 (106)
T 2wh5_A            6 PDCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYI   85 (106)
T ss_dssp             ---CHHHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            44789999999999998877666899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccc
Q 043342          191 DIVTELYPTWA  201 (363)
Q Consensus       191 ~~v~~Ll~~~~  201 (363)
                      +++..|++...
T Consensus        86 ~~v~~l~~k~~   96 (106)
T 2wh5_A           86 TEMKLVAQKVI   96 (106)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999987544

>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=6.5e-22  Score=157.69  Aligned_cols=90  Identities=40%  Similarity=0.767  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCcc
Q 043342          112 ELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYID  191 (363)
Q Consensus       112 ~l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~  191 (363)
                      ++++.|+.|+++|+.++.    +++++++|+||+||||||+|+|+.++|++|++.+++||+||+++++|+.++||+.||+
T Consensus        15 ~~~~~F~~A~~~vk~l~~----~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gms~eeAm~~YI~   90 (116)
T 2cqu_A           15 ASQKDFENSMNQVKLLKK----DPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVD   90 (116)
T ss_dssp             CCHHHHHHHHHHHHHCCS----CCCHHHHHHHHHHHTTTTTCSCCSCCCCTTCHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccC----CCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            468999999999998763    5999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccc
Q 043342          192 IVTELYPTWAAGSS  205 (363)
Q Consensus       192 ~v~~Ll~~~~~~~~  205 (363)
                      +|..|++.|.....
T Consensus        91 lv~~l~~~~~~~~~  104 (116)
T 2cqu_A           91 LVSSLSPSLESSSQ  104 (116)
T ss_dssp             HHHHHCSCCCCCCC
T ss_pred             HHHHHccccccccc
Confidence            99999999886654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.85  E-value=3.9e-22  Score=185.82  Aligned_cols=144  Identities=16%  Similarity=0.121  Sum_probs=123.6

Q ss_pred             ccccCCCCcchhhhhcCCCCCcc---cccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHH
Q 043342          204 SSLKSKRGQEDAASTDSKAPMGP---VFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLH  280 (363)
Q Consensus       204 ~~~~~~~g~~~~~~a~~~~~~~~---ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh  280 (363)
                      ....+..|.++++.+...+....   ++.. +.+.+..  .|.||||+|+..|+.+++++|+++|++++.++..|+||||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY  100 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence            45577889999999888775543   2332 3333333  4899999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCC-CcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          281 WAVDRGHLNISELLVSKNADVNAKDNEG-QTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       281 ~A~~~g~~~iv~~Ll~~gadin~~d~~G-~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|+++... ..|.||||+|+..
T Consensus       101 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~  171 (285)
T 3kea_A          101 YAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKN  171 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHc
Confidence            9999999999999999999999999999 79999999999999999999999887333 2899999999876

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.85  E-value=1.5e-21  Score=185.20  Aligned_cols=177  Identities=20%  Similarity=0.256  Sum_probs=143.1

Q ss_pred             hHHHHHhcCCCCHHHH-HhcCcccccccccccccccc---------ccCCCCcchhhhhcCCCCCc---ccccccccccc
Q 043342          170 KWQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSS---------LKSKRGQEDAASTDSKAPMG---PVFSSFAYEEE  236 (363)
Q Consensus       170 k~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~---------~~~~~g~~~~~~a~~~~~~~---~ll~~~~~~~~  236 (363)
                      ..+..+..|.||++.| ..++.++++.|+..+.....         .....|.|+++.+...+...   .++...+.+.+
T Consensus       117 ~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n  196 (337)
T 4g8k_A          117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN  196 (337)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT
T ss_pred             hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC
Confidence            3445567788999986 45778888888876654321         23345788998887776543   34444566777


Q ss_pred             cCCCCchHHHHHHHHcCC----HHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcH
Q 043342          237 SGNDLKMDAIHAFAREGD----MDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK-NADVNAKDNEGQTP  311 (363)
Q Consensus       237 ~~~~~g~t~Lh~Aa~~g~----~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-gadin~~d~~G~Tp  311 (363)
                      ..+..|.|+||.++..+.    ..++++|+++|+++|.+|..|+||||+|+..|+.++++.|+.. |+++|.+|..|+||
T Consensus       197 ~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~Tp  276 (337)
T 4g8k_A          197 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA  276 (337)
T ss_dssp             CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBH
T ss_pred             ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCH
Confidence            888889999998887654    3578889999999999999999999999999999999999975 89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       312 Lh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ||+|+..|+.++|++|+++|++++.+     +|||+|+.+
T Consensus       277 L~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~  311 (337)
T 4g8k_A          277 LLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRN  311 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHc
Confidence            99999999999999999999999764     599999876

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.85  E-value=9.1e-21  Score=159.57  Aligned_cols=109  Identities=23%  Similarity=0.336  Sum_probs=104.5

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHc-CCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 043342          242 KMDAIHAFAREGDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR  320 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~~~v~~LL~~-g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~  320 (363)
                      +.|+||.|+..|+.+.++.|++. +.+++..+..|.||||+ +..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            57999999999999999999998 45899999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          321 EAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       321 ~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .+++++|+++|++++.+|..|+||||+|+..
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  111 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQE  111 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh
Confidence            9999999999999999999999999999854

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.84  E-value=1.5e-21  Score=161.43  Aligned_cols=130  Identities=19%  Similarity=0.198  Sum_probs=110.5

Q ss_pred             HHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHH
Q 043342          171 WQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAF  249 (363)
Q Consensus       171 ~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~A  249 (363)
                      .+..+..|.++++.| ..+..++++.|+..+.                                +.+..+..|.||||+|
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------------------------------~~~~~~~~g~t~L~~A   52 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGA--------------------------------DPNALNRFGRRPIQVM   52 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTC--------------------------------CTTCCCTTCCTTTTTS
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCC--------------------------------CcCCcCCCCCCHHHHH
Confidence            344455666676664 3355666666665322                                2344567789999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCccCCCC-CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 043342          250 AREGDMDNLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLV  328 (363)
Q Consensus       250 a~~g~~~~v~~LL~~g~~vn~~d~~-g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll  328 (363)
                      +. |+.+++++|+++|++++.+|.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+
T Consensus        53 ~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll  131 (136)
T 1d9s_A           53 MM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLH  131 (136)
T ss_dssp             TT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHH
T ss_pred             Hc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99 9999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC
Q 043342          329 KQNAD  333 (363)
Q Consensus       329 ~~Gad  333 (363)
                      ++|+|
T Consensus       132 ~~Gad  136 (136)
T 1d9s_A          132 AATGD  136 (136)
T ss_dssp             HHHCC
T ss_pred             HcCCC
Confidence            99986

>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}

Probab=99.84  E-value=6.3e-22  Score=152.47  Aligned_cols=84  Identities=36%  Similarity=0.744  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCccccc
Q 043342          115 EMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVT  194 (363)
Q Consensus       115 ~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~~v~  194 (363)
                      ++|+.|+++|+++++   .+++++++|+||+||||||+|+|+.++|++|++.+++||+||.++++|+.++||+.||+++.
T Consensus        12 ~~F~~A~~~vk~l~~---~~ps~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~YI~lv~   88 (96)
T 2lbb_A           12 DDFDAAVKYVSNTTT---MMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLLD   88 (96)
T ss_dssp             STHHHHHHHHHHCCC---SCCCTTTTTHHHHHHHHTTTSSCCCCCCCSSCSHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC---CCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHhHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            479999999998763   36999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc
Q 043342          195 ELYPTWA  201 (363)
Q Consensus       195 ~Ll~~~~  201 (363)
                      .+++.|.
T Consensus        89 ~l~~~~~   95 (96)
T 2lbb_A           89 TLAPSWR   95 (96)
T ss_dssp             HHCGGGT
T ss_pred             HHhchhc
Confidence            9998775

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.84  E-value=1.1e-20  Score=175.59  Aligned_cols=113  Identities=29%  Similarity=0.531  Sum_probs=109.2

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 043342          239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC  318 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~  318 (363)
                      +..+.|+||.||..|+.+++++|+++|+++|..+..|.||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          319 DREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       319 g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+.+++++|+++|++++.+|..|.||||+|+..
T Consensus       117 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  149 (299)
T 1s70_B          117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc
Confidence            999999999999999999999999999999765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.84  E-value=2.6e-21  Score=176.66  Aligned_cols=141  Identities=21%  Similarity=0.237  Sum_probs=115.4

Q ss_pred             CCcchhhhhcCCCCCcc---cccc---cccccc----cCCCCchHHHHHHH---HcCCHHHHHHHHHcCCC---------
Q 043342          210 RGQEDAASTDSKAPMGP---VFSS---FAYEEE----SGNDLKMDAIHAFA---REGDMDNLLKCIENGVS---------  267 (363)
Q Consensus       210 ~g~~~~~~a~~~~~~~~---ll~~---~~~~~~----~~~~~g~t~Lh~Aa---~~g~~~~v~~LL~~g~~---------  267 (363)
                      .+.++++.+...+....   ++..   ......    ..+..|.||||+|+   +.|+.+++++|++.|++         
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            34556666666554443   3331   112222    23467999999999   77999999999998743         


Q ss_pred             --CccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC--------------CCCCcHHHHHHHcCCHHHHHHHHh--
Q 043342          268 --VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD--------------NEGQTPLHYAVVCDREAIAQFLVK--  329 (363)
Q Consensus       268 --vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d--------------~~G~TpLh~A~~~g~~~iv~~Ll~--  329 (363)
                        ++..|..|+||||+|+..|+.+++++|+++|++++.++              ..|+||||+|+..|+.+++++|++  
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence              44455689999999999999999999999999999998              689999999999999999999999  


Q ss_pred             -CCCCCCCCCCCCCcHHHHHhc
Q 043342          330 -QNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       330 -~Gad~~~~d~~G~TpL~~A~~  350 (363)
                       +|++++.+|..|+||||+|+.
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~  185 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVA  185 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHH
T ss_pred             ccCCCCcccCCCCCcHHHHHHH
Confidence             999999999999999999993

>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A

Probab=99.84  E-value=5.2e-22  Score=151.19  Aligned_cols=83  Identities=35%  Similarity=0.562  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCcccc
Q 043342          114 DEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV  193 (363)
Q Consensus       114 ~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~~v  193 (363)
                      ++.|+.|+++|++++.    +++++++|+||+||||||+|+|+.++|++|++.+++||+||.++++|+.++||+.||+++
T Consensus         3 ~~~F~~A~~~vk~l~~----~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~Yi~~v   78 (87)
T 2cb8_A            3 QAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKV   78 (87)
T ss_dssp             HHHHHHHHHHGGGCSS----CCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccC----CcCHHHHHHHHHHHHhhhhCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            6899999999998753    699999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc
Q 043342          194 TELYPTW  200 (363)
Q Consensus       194 ~~Ll~~~  200 (363)
                      ..|++.+
T Consensus        79 ~~l~~~~   85 (87)
T 2cb8_A           79 EELKKKY   85 (87)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.84  E-value=2.5e-22  Score=181.65  Aligned_cols=137  Identities=18%  Similarity=0.154  Sum_probs=111.5

Q ss_pred             CCcchhhhhcCCCCCcc--cccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCC
Q 043342          210 RGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGH  287 (363)
Q Consensus       210 ~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~  287 (363)
                      ++.++++.++..+....  .+...+.+.+..+..|.||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~   99 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCND   99 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            44455555555543321  1112233456677889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCC-CCCCcHHHHH--HHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 043342          288 LNISELLVSKNADVNAKD-NEGQTPLHYA--VVCDREAIAQFLVKQNADIGMKDNDGNSPCH  346 (363)
Q Consensus       288 ~~iv~~Ll~~gadin~~d-~~G~TpLh~A--~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~  346 (363)
                      .+++++|++.|++++.++ ..|+||||+|  +..|+.+++++|+++|++++.+|..|.||++
T Consensus       100 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~  161 (229)
T 2vge_A          100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW  161 (229)
T ss_dssp             HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence            999999999999999987 6999999999  9999999999999987776666555555544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.83  E-value=3.3e-22  Score=190.05  Aligned_cols=102  Identities=15%  Similarity=0.124  Sum_probs=91.7

Q ss_pred             cccccccc-CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCC---HHHHHHHHhCC-CCCCCC
Q 043342          230 SFAYEEES-GNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGH---LNISELLVSKN-ADVNAK  304 (363)
Q Consensus       230 ~~~~~~~~-~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~---~~iv~~Ll~~g-adin~~  304 (363)
                      ..+.+.+. .+..|.||||+||..|+.+++++||++|++++.+|..|+||||+|+..|+   .++++.|++.+ ++++.+
T Consensus       118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~  197 (327)
T 1sw6_A          118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  197 (327)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCC
Confidence            33455566 78899999999999999999999999999999999999999999999998   67788888775 789999


Q ss_pred             CCCCCcHHHHHHH----cCCHHHHHHHHhCC
Q 043342          305 DNEGQTPLHYAVV----CDREAIAQFLVKQN  331 (363)
Q Consensus       305 d~~G~TpLh~A~~----~g~~~iv~~Ll~~G  331 (363)
                      |..|+||||+|+.    .|+.+++++|++.+
T Consensus       198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~  228 (327)
T 1sw6_A          198 DSMNRTILHHIIITSGMTGCSAAAKYYLDIL  228 (327)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHccccccHHHHHHHHHHH
Confidence            9999999999999    89999999999873

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=2.2e-20  Score=173.88  Aligned_cols=111  Identities=23%  Similarity=0.447  Sum_probs=103.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCc------cCCCCCChHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCcH
Q 043342          241 LKMDAIHAFAREGDMDNLLKCIENGVSVN------LRDSEGRAPLHWAVDR---GHLNISELLVSKNADVNAKDNEGQTP  311 (363)
Q Consensus       241 ~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn------~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~gadin~~d~~G~Tp  311 (363)
                      ...++|+.|+..|+.+.++.++..|++++      ..+..|+||||+|+..   |+.+++++|+++|+++|.+|..|+||
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCH
Confidence            34679999999999999999999998854      4478899999999999   89999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          312 LHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       312 Lh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  248 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL  248 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Confidence            9999999999999999999999999999999999999865

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.82  E-value=4e-20  Score=149.07  Aligned_cols=124  Identities=33%  Similarity=0.507  Sum_probs=110.0

Q ss_pred             CCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHH
Q 043342          178 GAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMD  256 (363)
Q Consensus       178 g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~  256 (363)
                      |.++++.| ..+..++++.|+..+..                                .+..+..|.||||+|+..|+.+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~--------------------------------~~~~~~~g~t~L~~A~~~~~~~   49 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD--------------------------------VNAKDKNGRTPLHLAARNGHLE   49 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCC--------------------------------TTCCCTTSCCHHHHHHHHTCHH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCC--------------------------------CCCcCCCCCcHHHHHHHcCcHH
Confidence            67788875 45677888888764321                                1234566889999999999999


Q ss_pred             HHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 043342          257 NLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD  333 (363)
Q Consensus       257 ~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad  333 (363)
                      ++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        50 ~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           50 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999986

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=6.4e-20  Score=177.46  Aligned_cols=114  Identities=24%  Similarity=0.419  Sum_probs=107.9

Q ss_pred             CCCCchHHHHHHHHc-CCHHHHHHHHHcCCCCccCC--CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          238 GNDLKMDAIHAFARE-GDMDNLLKCIENGVSVNLRD--SEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY  314 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~-g~~~~v~~LL~~g~~vn~~d--~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~  314 (363)
                      ....+.|+||.|+.. |+.++++.|++.|+++|..+  ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH  274 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            344567999999999 99999999999999999988  789999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          315 AVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       315 A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+..|+.+++++|+++|++++.+|.+|.||||+|+..
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~  311 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET  311 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC
Confidence            9999999999999999999999999999999999866

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.82  E-value=1.4e-20  Score=170.60  Aligned_cols=111  Identities=23%  Similarity=0.259  Sum_probs=75.5

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 043342          240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD  319 (363)
Q Consensus       240 ~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g  319 (363)
                      ..|.||||.|++.|+.+.++.|+++|++++.. ..|.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            45899999999999999999999999999864 67899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          320 REAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       320 ~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +.+++++|+++|++++.+|..|+||||+|+..
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~  113 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASC  113 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            99999999999999999999999999999865

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.82  E-value=3.6e-20  Score=153.00  Aligned_cols=124  Identities=29%  Similarity=0.327  Sum_probs=108.2

Q ss_pred             hcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCC
Q 043342          176 KLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGD  254 (363)
Q Consensus       176 ~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~  254 (363)
                      ..+.++++.| ..+..++++.|+..+.+                                .+..+..|.||||+|+..|+
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~--------------------------------~~~~~~~g~t~L~~A~~~~~   59 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGAD--------------------------------VNAKDEYGLTPLYLATAHGH   59 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCC--------------------------------TTCCCTTSCCHHHHHHHHTC
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCC--------------------------------CCCcCCCCCCHHHHHHHcCC
Confidence            3356777775 55777888888764321                                23345678999999999999


Q ss_pred             HHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 043342          255 MDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN  331 (363)
Q Consensus       255 ~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G  331 (363)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        60 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999886

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.81  E-value=1.6e-19  Score=169.98  Aligned_cols=110  Identities=20%  Similarity=0.377  Sum_probs=93.3

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCcc------CCCCCChHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 043342          242 KMDAIHAFAREGDMDNLLKCIENGVSVNL------RDSEGRAPLHWAVDR---GHLNISELLVSKNADVNAKDNEGQTPL  312 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~------~d~~g~TpLh~A~~~---g~~~iv~~Ll~~gadin~~d~~G~TpL  312 (363)
                      ..++||.|+..|+.+.++.|+..|++++.      .+..|+||||+|+..   ++.+++++|+++|+++|.+|..|+|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            45778888888888888888888888877      577888888888886   788888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          313 HYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       313 h~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~  269 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK  269 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            888888888888888888888888888888888888753

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.81  E-value=1.3e-19  Score=181.85  Aligned_cols=109  Identities=20%  Similarity=0.386  Sum_probs=89.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccC------CCCCChHHHHHHH---cCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLR------DSEGRAPLHWAVD---RGHLNISELLVSKNADVNAKDNEGQTPLH  313 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~------d~~g~TpLh~A~~---~g~~~iv~~Ll~~gadin~~d~~G~TpLh  313 (363)
                      .+.||.|+..|+.+.++.||+.|+++|..      +..|.||||+||.   .|+.+++++|+++|+++|.+|..|+||||
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh  212 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH  212 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence            46788888888888888888888887766      6778888888866   77888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       314 ~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus       213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  250 (497)
T 3lvq_E          213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK  250 (497)
T ss_dssp             HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            88888888888888888888888888888888888755

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.81  E-value=2.4e-20  Score=175.59  Aligned_cols=108  Identities=20%  Similarity=0.209  Sum_probs=99.1

Q ss_pred             CCCCchHHHHHHHHc---CCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          238 GNDLKMDAIHAFARE---GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY  314 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~---g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~  314 (363)
                      .+..|.||||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~  265 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI  265 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHH
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            467899999999997   89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          315 AVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       315 A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+..|+.+++++|+++|++      .|.||||+|+..
T Consensus       266 A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~  296 (301)
T 2b0o_E          266 ARKKHHKECEELLEQAQAG------TFAFPLHVDYSW  296 (301)
T ss_dssp             HHHHTCHHHHHHHHHHHHH------TTSSCCC-----
T ss_pred             HHHcCCHHHHHHHHHhcCC------CCCChhHHHHhc
Confidence            9999999999999999986      589999999753

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.79  E-value=1.2e-20  Score=165.44  Aligned_cols=157  Identities=11%  Similarity=0.075  Sum_probs=123.1

Q ss_pred             CCHHH-HHhcCccccccccccccccccccCCCCcchhhhhcCCCC------CcccccccccccccCCCCchHHHHHHHHc
Q 043342          180 MPPEE-AMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAP------MGPVFSSFAYEEESGNDLKMDAIHAFARE  252 (363)
Q Consensus       180 t~l~~-A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~------~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~  252 (363)
                      ++++. |..+.++.++.++....  .......|.|++|.+...+.      +..++...+.+.+..+..|+||||+|+..
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~   85 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG   85 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            34454 45566677777665432  11122457788887777663      22334445666777889999999999999


Q ss_pred             CC------HHHHHHHHHcCCCCccCCCCCC-hHHHHHHHcC-----CHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcC
Q 043342          253 GD------MDNLLKCIENGVSVNLRDSEGR-APLHWAVDRG-----HLNISELLVS-KNADVNAKDNEGQTPLHYAVVCD  319 (363)
Q Consensus       253 g~------~~~v~~LL~~g~~vn~~d~~g~-TpLh~A~~~g-----~~~iv~~Ll~-~gadin~~d~~G~TpLh~A~~~g  319 (363)
                      |+      .+++++|+++|+++|.+|..|+ ||||+|+..+     +.+++++|++ +|+++|.+|..|+||||+|+..|
T Consensus        86 ~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~  165 (186)
T 3t8k_A           86 GGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ  165 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTT
T ss_pred             CCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcC
Confidence            87      6889999999999999999999 9999999854     4569999999 99999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCC
Q 043342          320 REAIAQFLVKQNADIGMKD  338 (363)
Q Consensus       320 ~~~iv~~Ll~~Gad~~~~d  338 (363)
                      +.++|++|+++....+.++
T Consensus       166 ~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          166 KPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             CHHHHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHHHhccc
Confidence            9999999998766665554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=1.9e-19  Score=167.45  Aligned_cols=96  Identities=19%  Similarity=0.307  Sum_probs=92.6

Q ss_pred             CCCCchHHHHHHHHc---CCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          238 GNDLKMDAIHAFARE---GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY  314 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~---g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~  314 (363)
                      .+..|.||||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus       165 ~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~  244 (278)
T 1dcq_A          165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  244 (278)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHH
Confidence            456789999999999   89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCC
Q 043342          315 AVVCDREAIAQFLVKQNAD  333 (363)
Q Consensus       315 A~~~g~~~iv~~Ll~~Gad  333 (363)
                      |+..|+.+++++|+++|++
T Consensus       245 A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          245 AKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHTTCHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999885

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.78  E-value=6e-20  Score=164.03  Aligned_cols=139  Identities=15%  Similarity=0.134  Sum_probs=108.8

Q ss_pred             HHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHH
Q 043342          172 QAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFA  250 (363)
Q Consensus       172 ~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa  250 (363)
                      +..+..|.++++.| ..+..++++.|+..+.+                                .+..+..|.||||+||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------------------------------~~~~~~~g~t~L~~A~  114 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVG--------------------------------VNGLDKAGSTALYWAC  114 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC--------------------------------TTCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCC--------------------------------ccccCCCCCCHHHHHH
Confidence            45567789999985 55788999998864331                                2334567899999999


Q ss_pred             HcCCHHHHHHHHHc-CCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 043342          251 REGDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK  329 (363)
Q Consensus       251 ~~g~~~~v~~LL~~-g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  329 (363)
                      ..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.++++.|++
T Consensus       115 ~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~  194 (222)
T 3ehr_A          115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQG  194 (222)
T ss_dssp             HTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----
T ss_pred             HcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhc
Confidence            99999999999998 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q 043342          330 QNADIGMKDNDGN  342 (363)
Q Consensus       330 ~Gad~~~~d~~G~  342 (363)
                      +|+..+.+|.+|+
T Consensus       195 ~~~~~~~~~~~~~  207 (222)
T 3ehr_A          195 TDAVRTLSNAEDY  207 (222)
T ss_dssp             -------------
T ss_pred             cchhhhccchhhh
Confidence            9999988877654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=2.9e-18  Score=136.65  Aligned_cols=93  Identities=30%  Similarity=0.443  Sum_probs=85.8

Q ss_pred             cccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          235 EESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY  314 (363)
Q Consensus       235 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~  314 (363)
                      ....+..|.|+||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHH
Q 043342          315 AVVCDREAIAQFL  327 (363)
Q Consensus       315 A~~~g~~~iv~~L  327 (363)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999987

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=1.4e-18  Score=133.95  Aligned_cols=78  Identities=41%  Similarity=0.742  Sum_probs=74.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       274 ~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|+||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            489999999999999999999999999999999999999999999999999999999999999999999999999866

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.75  E-value=2.8e-19  Score=147.54  Aligned_cols=126  Identities=21%  Similarity=0.245  Sum_probs=103.3

Q ss_pred             HhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcC
Q 043342          175 QKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREG  253 (363)
Q Consensus       175 ~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g  253 (363)
                      +..|.++++.| ..+..++++.|+..+.                                +.+..+..|.||||+|+..|
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~--------------------------------~~~~~~~~g~t~L~~A~~~~   54 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGS--------------------------------DPNVKDHAGWTPLHEACNHG   54 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTC--------------------------------CSCCCCTTSCCHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCC--------------------------------CCCcCCCCCCCHHHHHHHcC
Confidence            34566777764 4456666666665322                                22345667899999999999


Q ss_pred             CHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 043342          254 DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNA  332 (363)
Q Consensus       254 ~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga  332 (363)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus        55 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           55 HLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999988899888877654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.73  E-value=5.1e-18  Score=164.11  Aligned_cols=138  Identities=20%  Similarity=0.261  Sum_probs=102.2

Q ss_pred             cchhhhhcCC-CCCccc--ccccccccccCC--CCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcC
Q 043342          212 QEDAASTDSK-APMGPV--FSSFAYEEESGN--DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRG  286 (363)
Q Consensus       212 ~~~~~~a~~~-~~~~~l--l~~~~~~~~~~~--~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g  286 (363)
                      .++++.++.. +.+..+  +.....+.+..+  ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g  279 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG  279 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            3456666655 543322  122333444455  78899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC---CCCCCCCCCCCcHHHHHh
Q 043342          287 HLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN---ADIGMKDNDGNSPCHVCE  349 (363)
Q Consensus       287 ~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G---ad~~~~d~~G~TpL~~A~  349 (363)
                      +.+++++|+++|++++.+|..|.||||+|+..++.+++++|+.++   ++....+..+.|+++++.
T Consensus       280 ~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred             cHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999875   445566778899988754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.72  E-value=2.9e-18  Score=138.86  Aligned_cols=111  Identities=23%  Similarity=0.196  Sum_probs=92.8

Q ss_pred             HhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcC
Q 043342          175 QKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREG  253 (363)
Q Consensus       175 ~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g  253 (363)
                      ...+.++++.| ..+..++++.|+..+.                                +.+..+..|.||||+|+..|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~   51 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGE--------------------------------DVNRTLEGGRKPLHYAADCG   51 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTC--------------------------------CTTSCCTTSSCHHHHHHHTT
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCC--------------------------------CcCccCCCCCcHHHHHHHcC
Confidence            45566777765 4466777777775332                                12344667899999999999


Q ss_pred             CHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 043342          254 DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVV  317 (363)
Q Consensus       254 ~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~  317 (363)
                      +.+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|..
T Consensus        52 ~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           52 QLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             CHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999999943

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.72  E-value=8e-18  Score=146.01  Aligned_cols=129  Identities=19%  Similarity=0.147  Sum_probs=106.0

Q ss_pred             HHHhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHH
Q 043342          173 AWQKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAR  251 (363)
Q Consensus       173 aw~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~  251 (363)
                      ..+..|.++++.|. .+..++++.|+. +.                                +.+..+..|.||||+|+.
T Consensus        39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~--------------------------------~~~~~d~~g~t~L~~A~~   85 (183)
T 3deo_A           39 DVVSEYETPWWTAARKADEQALSQLLE-DR--------------------------------DVDAVDENGRTALLFVAG   85 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTT-TS--------------------------------CTTCCCTTSCCHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh-cC--------------------------------CCCCcCCCCCCHHHHHHH
Confidence            34456778888754 466777777775 21                                123456678999999999


Q ss_pred             cCCHHHHHHHHHcCCCCccCC-CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 043342          252 EGDMDNLLKCIENGVSVNLRD-SEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ  330 (363)
Q Consensus       252 ~g~~~~v~~LL~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  330 (363)
                      .|+.+++++|+++|+++|.++ ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.         
T Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~---------  156 (183)
T 3deo_A           86 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT---------  156 (183)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT---------
T ss_pred             cCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC---------
Confidence            999999999999999999998 8899999999999999999999999999999999999999999875322         


Q ss_pred             CCCCCCCCCCCCcHHHHHhcC
Q 043342          331 NADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       331 Gad~~~~d~~G~TpL~~A~~~  351 (363)
                              ..+.+||+++++.
T Consensus       157 --------~~~~~~l~~a~~~  169 (183)
T 3deo_A          157 --------TPKGNPMQFGRRI  169 (183)
T ss_dssp             --------CCCCSHHHHHHHH
T ss_pred             --------cccccHHHHHHHc
Confidence                    3457788777654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.71  E-value=9.8e-18  Score=152.53  Aligned_cols=123  Identities=22%  Similarity=0.181  Sum_probs=101.9

Q ss_pred             HhcCCCCHHHHHh-cCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcC
Q 043342          175 QKLGAMPPEEAMQ-KYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREG  253 (363)
Q Consensus       175 ~~~g~t~l~~A~~-~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g  253 (363)
                      +..|.|+++.|.. +..++++.|+. +.                                +.+..+..|.||||+||..|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~--------------------------------~~~~~d~~g~t~L~~A~~~g   88 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DR--------------------------------DVDAVDENGRTALLFVAGLG   88 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TC--------------------------------CTTCBCTTSCBHHHHHHHHT
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CC--------------------------------CCCCcCCCCCCHHHHHHHCC
Confidence            4567788887644 67777777775 21                                12344567899999999999


Q ss_pred             CHHHHHHHHHcCCCCccCC-CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH---------------
Q 043342          254 DMDNLLKCIENGVSVNLRD-SEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVV---------------  317 (363)
Q Consensus       254 ~~~~v~~LL~~g~~vn~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~---------------  317 (363)
                      +.+++++|+++|+++|.++ ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.               
T Consensus        89 ~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~  168 (244)
T 3ui2_A           89 SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR  168 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHH
Confidence            9999999999999999998 789999999999999999999999999999999999999999984               


Q ss_pred             -cCCHHHHHHHHhC
Q 043342          318 -CDREAIAQFLVKQ  330 (363)
Q Consensus       318 -~g~~~iv~~Ll~~  330 (363)
                       .|+.+++++|+++
T Consensus       169 ~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          169 RIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HcChHHHHHHHHHh
Confidence             4555666666654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=4.8e-17  Score=129.48  Aligned_cols=84  Identities=26%  Similarity=0.351  Sum_probs=77.0

Q ss_pred             CccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          268 VNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV  347 (363)
Q Consensus       268 vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~  347 (363)
                      ....+..|.|+||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC
Q 043342          348 CESD  351 (363)
Q Consensus       348 A~~~  351 (363)
                      |+..
T Consensus        97 A~~~  100 (110)
T 2zgd_A           97 SIDN  100 (110)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9864

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.66  E-value=9.5e-17  Score=128.14  Aligned_cols=82  Identities=37%  Similarity=0.643  Sum_probs=79.3

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHh
Q 043342          270 LRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE  349 (363)
Q Consensus       270 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~  349 (363)
                      .+|..|+||||+||..|+.+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 043342          350 SD  351 (363)
Q Consensus       350 ~~  351 (363)
                      ..
T Consensus        84 ~~   85 (115)
T 2l6b_A           84 KN   85 (115)
T ss_dssp             TT
T ss_pred             HC
Confidence            76

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.66  E-value=3.3e-18  Score=165.93  Aligned_cols=136  Identities=12%  Similarity=0.037  Sum_probs=107.7

Q ss_pred             CCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHHH
Q 043342          179 AMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDN  257 (363)
Q Consensus       179 ~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~  257 (363)
                      .|+++.| ..++.++++.|+..+.....                             ....+..|.||||+||..|+.++
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-----------------------------~~~~~~~~~tpL~~Aa~~G~~ei  143 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEI-----------------------------VKVIQAENYQAFRLAAENGHLHV  143 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSS-----------------------------CC--CHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHH-----------------------------HHHhccCCCCHHHHHHHcCCHHH
Confidence            3788875 56889999999875431100                             01123356789999999999999


Q ss_pred             HHHHHHcCCCC---ccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCcHHHHHH-HcCCHHHHHHHHhCC
Q 043342          258 LLKCIENGVSV---NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA--KDNEGQTPLHYAV-VCDREAIAQFLVKQN  331 (363)
Q Consensus       258 v~~LL~~g~~v---n~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~--~d~~G~TpLh~A~-~~g~~~iv~~Ll~~G  331 (363)
                      +++|+++|+++   +..+.. .||||+|+..|+.+++++|+++|++++.  +|..|+||||+|+ ..|+.++|++|+++|
T Consensus       144 v~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          144 LNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence            99999999752   222223 8999999999999999999999999887  8888999999999 999999999999987


Q ss_pred             CCCCCCCCCCCcHHHHHhcC
Q 043342          332 ADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       332 ad~~~~d~~G~TpL~~A~~~  351 (363)
                      ++       |.||||+|+.+
T Consensus       223 a~-------~~taL~~Aa~~  235 (376)
T 2aja_A          223 VM-------LAYAEIHEFEY  235 (376)
T ss_dssp             HH-------HHHHHHCTTTT
T ss_pred             Cc-------cchHHHHHHHC
Confidence            53       89999999876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.66  E-value=9e-18  Score=162.84  Aligned_cols=111  Identities=11%  Similarity=-0.001  Sum_probs=93.7

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCC---ccCCCCCChHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCcHHH
Q 043342          240 DLKMDAIHAFAREGDMDNLLKCIENGVSV---NLRDSEGRAPLHWAVDRGHLNISELLVSKNAD---VNAKDNEGQTPLH  313 (363)
Q Consensus       240 ~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~v---n~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad---in~~d~~G~TpLh  313 (363)
                      ..+.||||+|++.|+.+++++|++.|+..   +..+..|.||||+|+..|+.+++++|+++|++   .+..+.+ +||||
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR  168 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence            44579999999999999999999998732   23445688999999999999999999999976   2333333 99999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCC--CCCCCCcHHHHHh-cC
Q 043342          314 YAVVCDREAIAQFLVKQNADIGM--KDNDGNSPCHVCE-SD  351 (363)
Q Consensus       314 ~A~~~g~~~iv~~Ll~~Gad~~~--~d~~G~TpL~~A~-~~  351 (363)
                      +|+..|+.++|++|+++|++++.  +|..|.||||+|+ .+
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~  209 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR  209 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHC
Confidence            99999999999999999999988  8899999999999 65

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B

Probab=92.03  E-value=0.24  Score=42.66  Aligned_cols=84  Identities=21%  Similarity=0.298  Sum_probs=63.4

Q ss_pred             chHHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCC--CCchhhhh------------hhhhHHHHHh
Q 043342          111 TELDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAP--QPSALKMT------------ARAKWQAWQK  176 (363)
Q Consensus       111 ~~l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~--~p~~~~~~------------~~ak~~aw~~  176 (363)
                      ..+.-.|.++..-+..    |....+.++.++|.+|..|+..|+++..  .|+.+...            .+..+..|.+
T Consensus        16 ~~~~l~y~Q~~~dil~----g~~~~~~~~a~~Laal~~qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~i~~~~~~   91 (206)
T 1mix_A           16 VQLNLLYVQARDDILN----GSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKN   91 (206)
T ss_dssp             HHHHHHHHHHHHHHHT----TSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC----CccccCHHHHHHHHHHhhhheecCCCcccccCCccchHhhCCHHHhhcccHHHHHHHHHH
Confidence            3345566666665553    4457899999999999999999998753  34443322            4566789999


Q ss_pred             cCCCCHHHHHhcCccccccccc
Q 043342          177 LGAMPPEEAMQKYIDIVTELYP  198 (363)
Q Consensus       177 ~g~t~l~~A~~~yv~~v~~Ll~  198 (363)
                      ..+++..+|+..|++++..|--
T Consensus        92 ~~g~s~~~A~~~yL~~~~~l~~  113 (206)
T 1mix_A           92 CGNMSEIEAKVRYVKLARSLKT  113 (206)
T ss_dssp             TTTCCHHHHHHHHHHHHHHSTT
T ss_pred             ccCCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999988744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	363
d1hbka_	89	a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium	1e-31
d1hb6a_	86	a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos t	1e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-04

>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Length = 89

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Plasmodium falciparum [TaxId: 5833]

 Score =  112 bits (282), Expect = 1e-31
 Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQ 172
           + ++F    +F+  +    +  + N+++L LY  YK +T G C+  +PSA K   R K++
Sbjct: 2   MAQVFEECVSFI--NGLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYE 59

Query: 173 AWQKLGAMPPEEAMQKYIDIVTELYPTW 200
           AW+ +  +  E+A ++Y+DIV+E++P W
Sbjct: 60  AWKSVENLNREDAQKRYVDIVSEIFPYW 87

>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Length = 86

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.5 bits (248), Expect = 1e-26
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 123 FVAASAAASS--QKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAM 180
           F  A+        K +++  L +Y+ YK AT G  +  +P  L    +AKW AW +L   
Sbjct: 5   FDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGT 64

Query: 181 PPEEAMQKYIDIVTELYPTW 200
             E+AM+ YID V EL   +
Sbjct: 65  SKEDAMKAYIDKVEELKKKY 84

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-24
 Identities = 29/115 (25%), Positives = 54/115 (46%)

Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
           +  +H  +  G +  +   ++ G S N+ + +   PLH A   GH  +++ L+   A VN
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 303 AKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLH 357
           AK  + QTPLH A       + + L++ NA+  +    G++P H+   +      
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 115

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 1e-17
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 5/178 (2%)

Query: 171 WQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQE--DAASTDSKAPMGPVF 228
             A    G  P   A Q+    +  L  +  A  +L +K G       + +   P+  V 
Sbjct: 224 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

Query: 229 SSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHL 288
                  ++   +    +H  +  G++  +   +++   VN +   G +PLH A  +GH 
Sbjct: 284 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 343

Query: 289 NISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFL---VKQNADIGMKDNDGNS 343
           +I  LL+   A  N   ++G TPL  A      ++   L     + + + + D    S
Sbjct: 344 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 4e-17
 Identities = 26/116 (22%), Positives = 47/116 (40%)

Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
                  +H  A+ G +      +E     N     G  PLH AV   +L+I +LL+ + 
Sbjct: 129 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 188

Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPW 354
              ++    G TPLH A   ++  +A+ L++       +   G +P H+   +   
Sbjct: 189 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 244

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 5e-17
 Identities = 26/94 (27%), Positives = 41/94 (43%)

Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
            +E   S      +G  PLH A   G + ++ELL+ ++A  NA    G TPLH AV  + 
Sbjct: 118 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN 177

Query: 321 EAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPW 354
             I + L+ +         +G +P H+       
Sbjct: 178 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV 211

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 1e-15
 Identities = 39/132 (29%), Positives = 59/132 (44%)

Query: 216 ASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEG 275
           A+ +  A M  +  S       GN   +  +H  A+EG +      I++GV V+     G
Sbjct: 238 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 297

Query: 276 RAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIG 335
             PLH A   G++ + + L+   ADVNAK   G +PLH A       I   L+K  A   
Sbjct: 298 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 357

Query: 336 MKDNDGNSPCHV 347
              +DG +P  +
Sbjct: 358 EVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 1e-14
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 33/137 (24%)

Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV--- 301
            +H  AR G  +     ++N   VN +  + + PLH A   GH N+ +LL+  NA+    
Sbjct: 36  PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 95

Query: 302 ------------------------------NAKDNEGQTPLHYAVVCDREAIAQFLVKQN 331
                                              +G TPLH A    +  +A+ L++++
Sbjct: 96  TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 155

Query: 332 ADIGMKDNDGNSPCHVC 348
           A       +G +P HV 
Sbjct: 156 AHPNAAGKNGLTPLHVA 172

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 1e-13
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 4/196 (2%)

Query: 165 MTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQED---AASTDSK 221
           +   A        G  P   A ++             A  +  +K+G      AA     
Sbjct: 86  LENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 145

Query: 222 APMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHW 281
                +    A+   +G +  +  +H      ++D +   +  G S +     G  PLH 
Sbjct: 146 RVAELLLERDAHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 204

Query: 282 AVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG 341
           A  +  + ++  L+      NA+  +G TPLH A       +   L+ + A+  + +  G
Sbjct: 205 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 264

Query: 342 NSPCHVCESDWPWMLH 357
            +P H+   +    + 
Sbjct: 265 LTPLHLVAQEGHVPVA 280

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 2e-13
 Identities = 30/109 (27%), Positives = 51/109 (46%)

Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
           +   +  +H  A+EG  + +   +    + NL +  G  PLH     GH+ ++++L+   
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 287

Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
             V+A    G TPLH A       + +FL++  AD+  K   G SP H 
Sbjct: 288 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 336

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 1e-12
 Identities = 43/193 (22%), Positives = 65/193 (33%), Gaps = 2/193 (1%)

Query: 165 MTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQE--DAASTDSKA 222
           +   A      K G  P   A +     V EL     A  +   K G      A   +  
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 178

Query: 223 PMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWA 282
            +  +         S        +H  A++  ++     ++ G S N    +G  PLH A
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 238

Query: 283 VDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGN 342
              GH  +  LL+SK A+ N  +  G TPLH         +A  L+K    +      G 
Sbjct: 239 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 298

Query: 343 SPCHVCESDWPWM 355
           +P HV        
Sbjct: 299 TPLHVASHYGNIK 311

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 1e-19
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLV 295
             G +  + A+ +             +++G  VN+R   G+ PL  AV++ HL + + L+
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239

Query: 296 SKN-ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD 338
            +   ++N  D++G+T L  AV    + IA+ L K+ A     D
Sbjct: 240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 4e-14
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 245 AIHAFAREGDMDNLLKCI-ENGVSVNLRDSEGRAPLHWAV----DRGHLNISELLVSKNA 299
           A+   A +G ++ L   + E G  VN  D+ GR  L  A+    D     I+ LL+   A
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 300 DVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN-ADIGMKDNDGNSPCHV 347
           DVN +   G+TPL  AV      + Q L++Q   +I   D+DG +   +
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 7e-12
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 268 VNLRDSEGRAPLHWAVDRGHLNISELLVSKN-ADVNAKDNEGQTPLHYAVV----CDREA 322
                  G   L  A ++GH+ + ++L+ +  ADVNA DN G+  L +A++     D EA
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 323 IAQFLVKQNADIGMKDNDGNSPCHVC 348
           I   L+   AD+ ++   G +P  + 
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILA 226

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 1e-11
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNE-GQTPLHYAVVCDREAIAQFLVKQNA 332
           E    L  AV    +++ + L+   A+VN ++ E G TPLH AV   RE I + L++  A
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 333 DIGMKDNDGNSPCHVCESDWPWMLH 357
           D  ++  +G +P  +        L 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLL 88

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 1e-07
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 1/112 (0%)

Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLVSKNADVNA 303
            +    +  D+D + + +E G +VN ++ E G  PLH AV     +I ELL+   AD   
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWM 355
           +   G TP   A +     + +  + + AD+   D  G +            
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 6e-07
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 11/128 (8%)

Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
                  A  G +  L   +  G  VN  D  G      A   G +   + L  + A+VN
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132

Query: 303 AKD----------NEGQTPLHYAVVCDREAIAQFLVKQN-ADIGMKDNDGNSPCHVCESD 351
            +             G T L  A       + + L+ +  AD+   DN G +        
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 192

Query: 352 WPWMLHAA 359
                  A
Sbjct: 193 SDDSDVEA 200

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.9 bits (198), Expect = 7e-18
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 4/156 (2%)

Query: 165 MTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPT-WAAGSSLKSKRGQEDAASTDSKAP 223
           + A      +         + +   + +   +  T            G   AA       
Sbjct: 145 VKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL 204

Query: 224 MGPVFSSFAYEEESGNDLKMDAIHAFAREGD---MDNLLKCIENGVSVNLRDSEGRAPLH 280
           MG +        +SG + K    +    E     ++NL         +N +DS G   L+
Sbjct: 205 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 264

Query: 281 WAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV 316
            A   G+++I + L+   AD    +  G  P+ +  
Sbjct: 265 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.4 bits (176), Expect = 6e-15
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 254 DMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK---NADVNAKDNEGQT 310
           D+       +    +    +E  +  +        +I E L  K      +NA+D+ G T
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 311 PLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
            L+ A      +I   L+   AD  + +  G  P  
Sbjct: 262 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.8 bits (146), Expect = 4e-11
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 7/155 (4%)

Query: 213 EDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLR- 271
           +     + +     + +  +     G        H        +         +++N+  
Sbjct: 44  QRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV 103

Query: 272 DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVC----DREAIAQFL 327
           D  G  PLHW     +L + + LV   ++    DN G++ L  AV      D       L
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 163

Query: 328 VKQNADIGMKDNDGNSPCH--VCESDWPWMLHAAK 360
                 + ++D+   +  H  +  S       AAK
Sbjct: 164 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 198

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 14/121 (11%), Positives = 42/121 (34%), Gaps = 16/121 (13%)

Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN------------- 289
           + A+ +                   + L DS  R  LH  +    +              
Sbjct: 145 VKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL 204

Query: 290 ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ---NADIGMKDNDGNSPCH 346
           +  ++  +N  + +  NE ++  +      +++I + L  +      +  +D++G++  +
Sbjct: 205 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 264

Query: 347 V 347
           +
Sbjct: 265 I 265

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 8e-18
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 34/146 (23%)

Query: 246 IHAFAREGDMDNLLKCI-ENGVSVNLRDSEGRAPLHWAVDRGHLN--------------- 289
           +   A  G ++ L + I  +       D + R  LHWA   GH                 
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 290 ------------------ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN 331
                             I + L+ K A VNA +  G TPLHYA   +R  IA  L++  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 332 ADIGMKDNDGNSPCHVCESDWPWMLH 357
           A+   KD+   +  H   +     + 
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGNLKMI 152

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 1e-16
 Identities = 30/109 (27%), Positives = 52/109 (47%)

Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
           N      +H  A +   +  +  +E G + + +D      +H A  +G+L +  +L+   
Sbjct: 100 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 159

Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
           A  N +D EG TPLH A   +R   A+ LV Q A I +++ +  +P  V
Sbjct: 160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 3e-15
 Identities = 24/88 (27%), Positives = 42/88 (47%)

Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
            +  G  VN  +  G  PLH+A  +    I+ +L+   A+ +AKD+   T +H A     
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 148

Query: 321 EAIAQFLVKQNADIGMKDNDGNSPCHVC 348
             +   L+   A   ++D +GN+P H+ 
Sbjct: 149 LKMIHILLYYKASTNIQDTEGNTPLHLA 176

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 7e-12
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLV 295
           ++ +  +  A+H  A +G++  +   +    S N++D+EG  PLH A D   +  ++LLV
Sbjct: 130 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 189

Query: 296 SKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK 329
           S+ A +  ++ E +TPL  A       I + +V+
Sbjct: 190 SQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE 222

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 76.3 bits (186), Expect = 2e-16
 Identities = 15/69 (21%), Positives = 27/69 (39%)

Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
             E G + + +D +G+ P+  A   G + +   L+ + A V A D    T    A   + 
Sbjct: 207 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH 266

Query: 321 EAIAQFLVK 329
             I     +
Sbjct: 267 HNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN-ADVNAKDNEGQTPLHYAVVCD 319
             +     +    +GR  LH+A    ++ I + LV +  ++ + +D +G+TP+  A    
Sbjct: 173 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 232

Query: 320 REAIAQFLVKQNADIGMKDNDGNSPCHV 347
           R  +  +L++Q A +   D   ++   +
Sbjct: 233 RIEVVMYLIQQGASVEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSE-GRAPLHWAVDRGHLNISELLV--------S 296
           I           + + I    SVN+ D    R  LHW         SE L+        +
Sbjct: 4   IKLHTEAAGSYAITEPITRE-SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 62

Query: 297 KNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWML 356
             ADVNA D +  TPL  AV+  R  +  +L+K  AD  + +    S  H   ++  + +
Sbjct: 63  AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGM 122

Query: 357 H 357
            
Sbjct: 123 M 123

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.0 bits (123), Expect = 3e-08
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELL 294
           ++     I   A+EG ++ ++  I+ G SV   D+        A    H NI ++ 
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 76.7 bits (187), Expect = 2e-16
 Identities = 27/102 (26%), Positives = 40/102 (39%)

Query: 230 SFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN 289
           S    +         A+H  A +G  + L   I+    VN++D +G  PLH A   G   
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246

Query: 290 ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQN 331
              +LV    D+ A +  GQT    A       + +   KQN
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 76.7 bits (187), Expect = 2e-16
 Identities = 25/91 (27%), Positives = 40/91 (43%)

Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
                ++       G   LH A  +G+  + +LL+    DVN KD +G TPLH A    +
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 321 EAIAQFLVKQNADIGMKDNDGNSPCHVCESD 351
           E   + LV+   D+   +  G +   V + D
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.3 bits (147), Expect = 3e-11
 Identities = 24/84 (28%), Positives = 37/84 (44%)

Query: 274 EGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNAD 333
           +  A    A   G       L+ + AD+N  + +G T LH A + D   + +FLV+  A+
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 334 IGMKDNDGNSPCHVCESDWPWMLH 357
           I   DN+G  P H   S     + 
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIA 122

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.1 bits (131), Expect = 3e-09
 Identities = 34/113 (30%), Positives = 59/113 (52%)

Query: 245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAK 304
              A    GD + +L+ +E G  +N  + +G   LH A    ++++ + LV   A++N  
Sbjct: 43  VFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102

Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLH 357
           DNEG  PLH A  C    IA++L+ Q A +G  +++G++P  + E +    L 
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 15/69 (21%), Positives = 26/69 (37%)

Query: 280 HWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDN 339
                    +  + L S + +       G T LH A       + + L++   D+ +KD 
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230

Query: 340 DGNSPCHVC 348
           DG +P H  
Sbjct: 231 DGWTPLHAA 239

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 8/44 (18%), Positives = 14/44 (31%)

Query: 305 DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
             +       A           L+++ ADI   + DG +  H  
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 72.2 bits (176), Expect = 8e-15
 Identities = 14/118 (11%), Positives = 24/118 (20%), Gaps = 7/118 (5%)

Query: 245 AIHAFAREGDMDNL---LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
                A  G    L      + +   V +  +E       A + GHL++   L       
Sbjct: 93  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

Query: 302 NAKD--NEGQTPLHYAVVCDREAIAQFLVKQNADI--GMKDNDGNSPCHVCESDWPWM 355
                  E       A       +   L +        M   +               
Sbjct: 153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 69.9 bits (170), Expect = 6e-14
 Identities = 10/99 (10%), Positives = 24/99 (24%), Gaps = 5/99 (5%)

Query: 262 IENGVSVNLRDSEGRAPLHWAVDRGH---LNISELLVSKNADVNAKDNEGQTPLHYAVVC 318
            +     + +  +       A   G    L+   LL++ +  V     E       A   
Sbjct: 77  KQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 136

Query: 319 DREAIAQFLVKQNAD--IGMKDNDGNSPCHVCESDWPWM 355
               +   L +      + M   +      +   +    
Sbjct: 137 GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 175

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.2 bits (124), Expect = 3e-08
 Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 11/97 (11%)

Query: 237 SGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVS 296
           +      DA      +G  D + K      S  L+       L    D   L+    L+S
Sbjct: 247 NRLKEMHDAFKLSNPDGVFDLVTK------SECLQGFYMLRNLIRRNDEVLLDDIRFLLS 300

Query: 297 K-----NADVNAKDNEGQTPLHYAVVCDREAIAQFLV 328
                  A       +    L  A+    +     L+
Sbjct: 301 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 14/127 (11%), Positives = 34/127 (26%), Gaps = 16/127 (12%)

Query: 235 EESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELL 294
           E   ND ++  I     E    + +    N +S+     +    +     +    + +LL
Sbjct: 8   ENYENDPQLRLIPWILWENLFQHFIS--ANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 295 VSKNADVNA-----------KDNEGQTPLHYAVVC---DREAIAQFLVKQNADIGMKDND 340
               A  N            K  + +     A +            L+  +  + +   +
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE 125

Query: 341 GNSPCHV 347
                 +
Sbjct: 126 NYQAFRL 132

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 14/117 (11%), Positives = 23/117 (19%), Gaps = 16/117 (13%)

Query: 236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLV 295
           +    L    IH     G+                R  E       +   G  ++     
Sbjct: 218 DCPVMLAYAEIHE-FEYGEKY----VNPFIARHVNRLKEMHDAFKLSNPDGVFDL----- 267

Query: 296 SKNADVNAKDNEGQTPLHYAVVCDREAIAQFL-----VKQNADIGMKDNDGNSPCHV 347
                   +       L            +FL     +K  A       D N    +
Sbjct: 268 -VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 323

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 234 EEESGNDLKMDAIHAFAREGDMDNL-----LKCIENGVSVNLRDSEGRAPLHWAVDRGHL 288
            E       +  +     E  +D++     +  I+          +    L  A+  G+ 
Sbjct: 271 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 330

Query: 289 NISELLVS 296
               LL+S
Sbjct: 331 GACALLLS 338

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (153), Expect = 3e-12
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 280 HWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDN 339
           H AV+    ++ ELL+   AD  A+   G+TPL  A++     +A+ L    A    +  
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP---EPE 253

Query: 340 DG 341
           DG
Sbjct: 254 DG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 7/132 (5%)

Query: 231 FAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVS---VNLRDSEGRAPLHWAVDRGH 287
           F Y  E G+     A+H          L   +        ++L++  G+  LH A   G 
Sbjct: 2   FGYVTEDGDT----ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE 57

Query: 288 LNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            +  E L +  A V   +  G T LH A        A  L++         +D       
Sbjct: 58  ASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 348 CESDWPWMLHAA 359
             +       AA
Sbjct: 118 DCTPDTSHAPAA 129

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD 305
           +H          L   ++ G     R   GR PL  A+ R +  ++ LL +  A    +D
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP-EPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 1/117 (0%)

Query: 232 AYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNIS 291
             ++ + +     A        + +   +  +  + +   + +G  PLH AV      + 
Sbjct: 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMV 174

Query: 292 ELLVSKNADVNA-KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHV 347
            LL    AD+N  +   G+TPLH AV     ++ + L+K  AD   +   G +P   
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 1e-11
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 278 PLHWAVDRGHLN-ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM 336
           PLH A        + ELL SK + +  KD +G+ PLH++V      I  FL+ +  ++ +
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 337 KDNDGNSPCHVCESDWPWMLH 357
            D   +S              
Sbjct: 63  DDYPDDSGWTPFHIACSVGNL 83

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 8e-11
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK-NADVNAKDNEGQTPLHYAVVCD 319
           C     +VN +D +G  PL  A+  GH + + LLV K  A+ +  DN+G      A+   
Sbjct: 158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL--- 214

Query: 320 REAIAQFLVKQNAD 333
            E + +F +    D
Sbjct: 215 NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 255 MDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD-VNAKDNEGQTPLH 313
            +     IENG SV ++D   + PLH A   G L + ELL       VN +D +G TPL 
Sbjct: 118 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 177

Query: 314 YAVVCDREAIAQFLV-KQNADIGMKDNDGNSPCHVCESD 351
           +A+       A  LV K  A+  + DN G     V  ++
Sbjct: 178 HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 9e-06
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 1/114 (0%)

Query: 245 AIHAFAREGDMDNLLKCIE-NGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNA 303
            +H    E +   + + +      +  +D +GR PLHW+V      I+  L+SK  +VN 
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 304 KDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLH 357
            D    +      +       + +          D +  +   V          
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 116

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 310 TPLHYAVVC-DREAIAQFLVKQNADIGMKDNDGNSPCHV---CESDWPWMLHAAKG 361
            PLH A +  +   + + L  + + +  KD DG  P H     ++        +K 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 49/158 (31%)

Query: 237 SGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLR------DSEGRAPLHWAV---DRGH 287
           +    K+ ++    +  D+  LL+   +GV +  +             LH AV   DR  
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 288 LNISELLVSKNADV---------------------------------NAKDNEGQTPLHY 314
           L+I + LV  + ++                                    +  G+TPL  
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 315 AVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDW 352
           A     E   + L +  +         NS  HV E +W
Sbjct: 121 AKRLKHEHCEELLTQALSG------RFNSHVHV-EYEW 151

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 4e-11
 Identities = 19/74 (25%), Positives = 31/74 (41%)

Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVN 302
              +        +  +   +++G +VN +   G + LH A  RG L +   LV   AD +
Sbjct: 145 RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 303 AKDNEGQTPLHYAV 316
            K+    TPL  A 
Sbjct: 205 LKNCHNDTPLMVAR 218

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-10
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 274 EGRAPLHWAVDRGHLNISELLVS----KNADVNAKDNEGQTPLHYA 315
           +G  PLH AV +G+L     LV+       +++  +N  QTPLH A
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query: 278 PLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMK 337
           PL  AV+   L++ +LL+   A+VNA+   G + LH A       + + LV+  AD  +K
Sbjct: 147 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 206

Query: 338 DNDGNSPCHV 347
           +   ++P  V
Sbjct: 207 NCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 307 EGQTPLHYAVVCDREAIAQFLVKQ----NADIGMKDNDGNSPCHVCESDWPWMLH 357
           +G TPLH AVV         LV        ++ + +N   +P H+        + 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 56

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNI 290
             A+H+ +  G +  +   + +G   +L++     PL  A  R  ++I
Sbjct: 178 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 4/117 (3%)

Query: 245 AIHAFAREGDMDN----LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNAD 300
            +H    +G++      +    + G  +++ ++  + PLH AV     ++  LLV+  A 
Sbjct: 6   PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 65

Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLH 357
             A D  GQT  H A         + L+   A   +     N               
Sbjct: 66  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.9 bits (138), Expect = 2e-10
 Identities = 16/89 (17%), Positives = 34/89 (38%)

Query: 239 NDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN 298
           ++    A+H  A   + + +   + +  + + +D +   PL  A   G    S+ L+   
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 299 ADVNAKDNEGQTPLHYAVVCDREAIAQFL 327
           A+    D+  + P   A       I + L
Sbjct: 180 ANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.0 bits (128), Expect = 3e-09
 Identities = 20/85 (23%), Positives = 39/85 (45%)

Query: 263 ENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREA 322
                +N  D+ G+  LHWA    +     +L+  +A+ +A+D++ +TPL  A       
Sbjct: 111 TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE 170

Query: 323 IAQFLVKQNADIGMKDNDGNSPCHV 347
            ++ L+   A+  + D+    P  V
Sbjct: 171 ASKALLDNFANREITDHMDRLPRDV 195

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 290 ISELLVSKNADVNAK-DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVC 348
           +   L+++ A++NA  D  G+T LH A    R   A+ L+   AD   +DN G +P H  
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 349 ESDWPWMLH 357
            +     + 
Sbjct: 64  VAADAMGVF 72

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 35/129 (27%)

Query: 262 IENGVSVNLR-DSEGRAPLHWAVDRGHLNISELLVSK----------------------- 297
           +  G  +N   D  G   LH A      + ++ L+                         
Sbjct: 9   LAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADA 68

Query: 298 -----------NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCH 346
                        ++NA+ ++G TPL  A     E + + L+  +ADI   DN G +  H
Sbjct: 69  MGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALH 128

Query: 347 VCESDWPWM 355
              +     
Sbjct: 129 WAAAVNNTE 137

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 5e-10
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 274 EGRAPLHWAVDRGHLNIS----ELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK 329
           +G + LH A+      ++      +    A +N ++N  QTPLH AV+ ++  IA+ L+ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 330 QNADIGMKDNDGNSPCHVCESDWPWMLH 357
              D  ++D  GN+P H+          
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASV 88

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 2e-08
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 1/101 (0%)

Query: 243 MDAIHAFAREGDMDNLLKCIENGVSV-NLRDSEGRAPLHWAVDRGHLNISELLVSKNADV 301
              +H  +  G +  +   +  G  V       GR  LH AVD  + ++  LL+   ADV
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 171

Query: 302 NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGN 342
           N    +G +P           I Q L +   +      +  
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 276 RAPLHWAVDRGHLNISELLVSKNADV-NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI 334
              LH A   G+L I ELLVS  ADV   +   G+T LH AV      +   L+K  AD+
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 171

Query: 335 GMKDNDGNSPCHV 347
                 G SP  +
Sbjct: 172 NRVTYQGYSPYQL 184

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 3e-08
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
            +E+G  VN+ D  G  P+H AV  GH  +    ++  +D++ +D  G TPL  A+    
Sbjct: 87  LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRGA 145

Query: 321 EAIAQFLV 328
           + +   L 
Sbjct: 146 QDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 278 PLHWAVDRGHLN-ISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM 336
            L  A  RG +  +  LL  +    +A +  G+T L   +        + L +  +    
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 337 KDNDGNSPCHVCESDWPWMLH 357
             +  +       + +   L 
Sbjct: 65  DTSGTSPVHDAARTGFLDTLK 85

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 5e-05
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVS 296
            +     ++ RD+ G  PL  A+ RG  ++ ++L  
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 34/137 (24%)

Query: 244 DAIHAFAREGDMDNLLKCIE-NGVSVNLRDSEGR-------------------------- 276
           D +   A  GD+  + + +    V  +  +  G+                          
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 277 ------APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ 330
                 +P+H A   G L+  ++LV   ADVN  D  G  P+H AV     A+  FL  +
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 331 NADIGMKDNDGNSPCHV 347
            +D+  +D  G +P  +
Sbjct: 124 -SDLHRRDARGLTPLEL 139

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (118), Expect = 3e-08
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 261 CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR 320
            +++G  VN +D      LHWA +  H  + ELL+   ADV+ +    +T    ++    
Sbjct: 86  LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145

Query: 321 EAIAQFL 327
           E +A+ L
Sbjct: 146 EDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 278 PLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMK 337
            L  A   G  +   +L++  A     D  G +PLH A      +  + L++       +
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 338 DNDGNSPCHVCESDWPWMLH 357
                +P H+  S+    + 
Sbjct: 64  TKVDRTPLHMAASEGHANIV 83

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 9e-08
 Identities = 16/80 (20%), Positives = 28/80 (35%)

Query: 278 PLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMK 337
            L  A  RG L     L+  N +VNA++  G+T L    + + E   + L++        
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKD 63

Query: 338 DNDGNSPCHVCESDWPWMLH 357
                       + +   L 
Sbjct: 64  RTGFAVIHDAARAGFLDTLQ 83

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 268 VNLRDSEGRAPLHWAVDRGHLNISELLVSK 297
           V  R+ +G      A   G   +  L+ + 
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 7/48 (14%), Positives = 16/48 (33%)

Query: 310 TPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESDWPWMLH 357
             L  A           L++ N ++  ++  G +   V +   P +  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIAR 50

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQ 330
           V  ++++G T    A +  R  +   +   
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 36/126 (28%)

Query: 246 IHAFAREGDMDNLLKCIENGVSVNLRDS-------------------------------- 273
           +   + EG+ D + + I      +L +                                 
Sbjct: 5   LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 64

Query: 274 -EGRAPLHWAVDRGHLNISELLVSKNADVNAKDN-EGQTPLHYAVVCDR--EAIAQFLVK 329
            +G  PLH A    ++ + + LV   A V A    + QT        +      +QFL  
Sbjct: 65  SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 124

Query: 330 QNADIG 335
               +G
Sbjct: 125 VQEKMG 130

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 277 APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGM 336
           A L  +   G  ++ + ++ +  D +  ++EG T LH AV      I +FLV+   ++  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 337 KDNDGNSPCHVCESDWPWMLH 357
            D+DG +P H   S     + 
Sbjct: 63  ADSDGWTPLHCAASCNNVQVC 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	363
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.88
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.88
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.87
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.87
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.86
d1hbka_	89	Acyl-CoA binding protein {Plasmodium falciparum [T	99.86
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.86
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.84
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.84
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.84
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.83
d1hb6a_	86	Acyl-CoA binding protein {Cow (Bos taurus) [TaxId:	99.82
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.81
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.76
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.76
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.75
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.74
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.73
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.72
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.71
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.71
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.7
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.7
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.69
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.68
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.64
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.61
d1h4ra1	111	Merlin {Human (Homo sapiens) [TaxId: 9606]}	82.02
d1gg3a1	106	Erythroid membrane protein 4.1R {Human (Homo sapie	80.63

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=4.5e-26  Score=183.33  Aligned_cols=109  Identities=32%  Similarity=0.457  Sum_probs=105.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREA  322 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~  322 (363)
                      .|||++|++.|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          323 IAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       323 iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ++++|+++|++++.+|.+|.||||+|..+
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~~~  111 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATDNQ  111 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCSST
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHhHH
Confidence            99999999999999999999999999653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.5e-25  Score=197.77  Aligned_cols=186  Identities=20%  Similarity=0.210  Sum_probs=153.5

Q ss_pred             hhhHHHHHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchH
Q 043342          168 RAKWQAWQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMD  244 (363)
Q Consensus       168 ~ak~~aw~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t  244 (363)
                      +...+..+..|.||+|.| ..+..++++.++........ ....+.++...+...+...  ..+.....+.+..+..|.|
T Consensus        27 ~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~t  105 (223)
T d1uoha_          27 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT  105 (223)
T ss_dssp             GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccc-ccccccccccccccccccchhHHHhccCceeEeeCCCCCc
Confidence            344556677899999985 66788988888775543333 3445556665554444322  1222233455678889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 043342          245 AIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIA  324 (363)
Q Consensus       245 ~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv  324 (363)
                      |||+|+..|+.+++++|+++|++++.++..|.||||+|+..++..++++|+..+.++|.+|..|+||||+|+..|+.++|
T Consensus       106 pL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v  185 (223)
T d1uoha_         106 PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA  185 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             hhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCcHHHHHhcCchH
Q 043342          325 QFLVKQNADIGMKDNDGNSPCHVCESDWPW  354 (363)
Q Consensus       325 ~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~~  354 (363)
                      ++|+++|++++.+|.+|+||||+|..+...
T Consensus       186 ~~LL~~Gad~~~~d~~g~tpl~~A~~~~~~  215 (223)
T d1uoha_         186 KLLVSQGASIYIENKEEKTPLQVAKGGLGL  215 (223)
T ss_dssp             HHHHHTTCCSCCCCTTSCCHHHHCCTTHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHCCCHH
Confidence            999999999999999999999999776543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-23  Score=170.89  Aligned_cols=116  Identities=22%  Similarity=0.273  Sum_probs=106.4

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCC
Q 043342          242 KMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQ-TPLHYAVVCDR  320 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~-TpLh~A~~~g~  320 (363)
                      +.++||+|++.|+.+++++|+++|+++|.++..|.||||+|+ .|+.+++++|+++|+++|.++..|. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            457999999999999999999999999999999999999775 7999999999999999999999876 69999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC--chHHHHh
Q 043342          321 EAIAQFLVKQNADIGMKDNDGNSPCHVCESD--WPWMLHA  358 (363)
Q Consensus       321 ~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~--~~~~~~~  358 (363)
                      .+++++|+++|++++.+|..|+||||+|+.+  .+.++-+
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999999865  4444443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.9e-23  Score=168.12  Aligned_cols=107  Identities=32%  Similarity=0.469  Sum_probs=102.3

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREA  322 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~  322 (363)
                      .++||.||..|+.++++.|+++|+++|.+|..|+||||+||..|+.+++++|++.|+++|.+|.+|+||||+|+.+|+.+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCC-CCCcHHHHHh
Q 043342          323 IAQFLVKQNADIGMKDN-DGNSPCHVCE  349 (363)
Q Consensus       323 iv~~Ll~~Gad~~~~d~-~G~TpL~~A~  349 (363)
                      ++++|+++|++++.++. +|+||++++.
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~  109 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCE  109 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCC
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHH
Confidence            99999999999998875 6899988774

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.7e-23  Score=185.03  Aligned_cols=183  Identities=22%  Similarity=0.220  Sum_probs=151.1

Q ss_pred             hhHHHHHhcCCCCHHHHH-hcCccccccccccccccc--cccCCCCcchhhhhcCCCCCccccc---cc-ccccccCCCC
Q 043342          169 AKWQAWQKLGAMPPEEAM-QKYIDIVTELYPTWAAGS--SLKSKRGQEDAASTDSKAPMGPVFS---SF-AYEEESGNDL  241 (363)
Q Consensus       169 ak~~aw~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~--~~~~~~g~~~~~~a~~~~~~~~ll~---~~-~~~~~~~~~~  241 (363)
                      ...+..+..|.||++.|. .+..++++.|+..+.+..  ...+..+.++.+.+........+..   .. .......+..
T Consensus        25 ~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (229)
T d1ixva_          25 SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ  104 (229)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTT
T ss_pred             CcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345566778999999864 578899999998776543  2355567777776665554332211   11 1223446677


Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCC
Q 043342          242 KMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKN-ADVNAKDNEGQTPLHYAVVCDR  320 (363)
Q Consensus       242 g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g-adin~~d~~G~TpLh~A~~~g~  320 (363)
                      +.++++.++..++.++++.|+..+.+.+.++..|+||||+|+..|+.+++++|++.+ .++|.+|..|+||||+|+..|+
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~  184 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH  184 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccccc
Confidence            889999999999999999999999999999999999999999999999999999987 6889999999999999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCCCCCCcHHHHHhcC
Q 043342          321 EAIAQFLVK-QNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       321 ~~iv~~Ll~-~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .++|++|++ +|++++.+|.+|+||||+|+++
T Consensus       185 ~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         185 GDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             HHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH
T ss_pred             HHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH
Confidence            999999996 6999999999999999999865

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.2e-23  Score=186.27  Aligned_cols=177  Identities=19%  Similarity=0.178  Sum_probs=138.0

Q ss_pred             HhcCCCCHHHH-HhcCcccccccccccccc--ccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHH
Q 043342          175 QKLGAMPPEEA-MQKYIDIVTELYPTWAAG--SSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAF  249 (363)
Q Consensus       175 ~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~--~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~A  249 (363)
                      ++.|.||+|.| ..++.++++.|+..+...  ...++..|.|+++.+...+...  .++...+.+.+..+..|.||||+|
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA   85 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhh
Confidence            46788999986 457788888888765433  3346677888988777666433  222333445667788889999999


Q ss_pred             HHcCCHHHHHHHHHcC-----------------------------------------------CCCccCCCCCChHHHHH
Q 043342          250 AREGDMDNLLKCIENG-----------------------------------------------VSVNLRDSEGRAPLHWA  282 (363)
Q Consensus       250 a~~g~~~~v~~LL~~g-----------------------------------------------~~vn~~d~~g~TpLh~A  282 (363)
                      +..++.++++.|++.+                                               .+++.++..|+||||+|
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A  165 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             hccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccc
Confidence            9999988888875422                                               12345677789999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          283 VDRGHLNISELLVSKNADVNAK-DNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       283 ~~~g~~~iv~~Ll~~gadin~~-d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |..++.+++++|++.+++++.. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus       166 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~  235 (255)
T d1oy3d_         166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR  235 (255)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTS
T ss_pred             ccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            9999999999999999888754 57899999999999999999999999999999999999999998876

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.5e-22  Score=178.09  Aligned_cols=168  Identities=18%  Similarity=0.254  Sum_probs=149.2

Q ss_pred             HHHhcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHHHHcCCHHHHHHH
Q 043342          184 EAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKC  261 (363)
Q Consensus       184 ~A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~L  261 (363)
                      .|..+.++.|+.++.........++..|.|++|.++..+...  .++.............+.++++.++..|+.+++++|
T Consensus        10 ~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L   89 (223)
T d1uoha_          10 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL   89 (223)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHH
Confidence            377888999999988777777778889999999988877543  223333344445566778999999999999999999


Q ss_pred             HHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 043342          262 IENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDG  341 (363)
Q Consensus       262 L~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G  341 (363)
                      +++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++..++++|+.+|++++.+|.+|
T Consensus        90 l~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g  169 (223)
T d1uoha_          90 LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEG  169 (223)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTC
T ss_pred             hccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHhcC
Q 043342          342 NSPCHVCESD  351 (363)
Q Consensus       342 ~TpL~~A~~~  351 (363)
                      +||||+|+..
T Consensus       170 ~TpL~~Aa~~  179 (223)
T d1uoha_         170 NTPLHLACDE  179 (223)
T ss_dssp             CCHHHHHHHT
T ss_pred             Cceecccccc
Confidence            9999999876

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=4.1e-22  Score=182.40  Aligned_cols=88  Identities=28%  Similarity=0.444  Sum_probs=81.1

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhc
Q 043342          271 RDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCES  350 (363)
Q Consensus       271 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~  350 (363)
                      .+..|.||||+|+..|+.+++++|++.|+++|.++..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|++
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             C-chHHHHh
Q 043342          351 D-WPWMLHA  358 (363)
Q Consensus       351 ~-~~~~~~~  358 (363)
                      + +..|.+.
T Consensus       275 ~~~~~L~~~  283 (291)
T d1s70b_         275 DILGYLEEL  283 (291)
T ss_dssp             GGGHHHHHH
T ss_pred             HHHHHHHHH
Confidence            6 4555543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.86  E-value=3.5e-21  Score=174.29  Aligned_cols=170  Identities=12%  Similarity=0.158  Sum_probs=127.6

Q ss_pred             CCHH--HHHhcCccccccccccccccccccCCCCcchhhhhcCCCCCccc---ccc-------cccccccCCCCchHHHH
Q 043342          180 MPPE--EAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPV---FSS-------FAYEEESGNDLKMDAIH  247 (363)
Q Consensus       180 t~l~--~A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~l---l~~-------~~~~~~~~~~~g~t~Lh  247 (363)
                      +|++  .+..+...+++.|......  ..+.+.|.|++|.++..+....+   +..       .+.+.+..+..|.||||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n--~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh   79 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM   79 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTT--TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCC--cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeec
Confidence            4544  3344556666666554433  23345688888888777754432   211       12355677888999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHH--------------------------------------
Q 043342          248 AFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLN--------------------------------------  289 (363)
Q Consensus       248 ~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~--------------------------------------  289 (363)
                      +|+..|+.+++++|+++|++++.++..|.||||+|+..++..                                      
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV  159 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccc
Confidence            999999999999999999988888888888888776655533                                      


Q ss_pred             ------------------------------------------HHHH-HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 043342          290 ------------------------------------------ISEL-LVSKNADVNAKDNEGQTPLHYAVVCDREAIAQF  326 (363)
Q Consensus       290 ------------------------------------------iv~~-Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~  326 (363)
                                                                ++++ +...+.+++.+|..|+||||+|+..|+.++|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~  239 (277)
T d2fo1e1         160 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY  239 (277)
T ss_dssp             HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence                                                      3332 334566778889999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          327 LVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       327 Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+++|++++.+|.+|+||||+|+.+
T Consensus       240 Ll~~gadin~~d~~G~T~L~~A~~~  264 (277)
T d2fo1e1         240 LIQQGASVEAVDATDHTARQLAQAN  264 (277)
T ss_dssp             HHHTTCCSSCCCSSSCCHHHHHHHT
T ss_pred             HHHCcCCCCCcCCCCCCHHHHHHHc
Confidence            9999999999999999999999876

>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.86  E-value=1.3e-22  Score=152.97  Aligned_cols=87  Identities=32%  Similarity=0.735  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCccc
Q 043342          113 LDEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDI  192 (363)
Q Consensus       113 l~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~~  192 (363)
                      |++.|+.|+.+|++.++.  .+++++++|+|||||||||.|+|+.++|++|++.+++||+||.++++|+.++||..|+++
T Consensus         2 L~~~F~~A~~~v~~~~~~--~~~~~~~~L~lY~lyKQat~G~~~~~~P~~~~~~~~~Kw~AW~~l~gms~~eA~~~Yi~~   79 (89)
T d1hbka_           2 MAQVFEECVSFINGLPRT--INLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDI   79 (89)
T ss_dssp             HHHHHHHHHHHHHHSCTT--CCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            789999999999987653  468999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccc
Q 043342          193 VTELYPTWA  201 (363)
Q Consensus       193 v~~Ll~~~~  201 (363)
                      +..|++.|.
T Consensus        80 v~~l~p~w~   88 (89)
T d1hbka_          80 VSEIFPYWQ   88 (89)
T ss_dssp             HHHHCTTTT
T ss_pred             HHHHccccc
Confidence            999999885

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.2e-21  Score=171.24  Aligned_cols=175  Identities=22%  Similarity=0.188  Sum_probs=140.1

Q ss_pred             cCCCCHHHHHh-cCccccccccccc---cccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHHHHHH
Q 043342          177 LGAMPPEEAMQ-KYIDIVTELYPTW---AAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAIHAFA  250 (363)
Q Consensus       177 ~g~t~l~~A~~-~yv~~v~~Ll~~~---~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~Lh~Aa  250 (363)
                      .|.||+|.|.. +..+++..|+...   ......++..|.||+|.+...+...  ..+...+.+....+..|.||||.++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            48899998754 5555555554432   1123456778999999888777443  2233334556677888999999999


Q ss_pred             HcCCHHHHHHHHHcCCCC------ccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCCHHH
Q 043342          251 REGDMDNLLKCIENGVSV------NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD-NEGQTPLHYAVVCDREAI  323 (363)
Q Consensus       251 ~~g~~~~v~~LL~~g~~v------n~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d-~~G~TpLh~A~~~g~~~i  323 (363)
                      ..|+.++++.++..+...      +.....|.||||+|+..++.+++++|+..|+.++..+ ..|.||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            999999999999976543      2344568999999999999999999999999998765 579999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          324 AQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       324 v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +++|+++|+|++.+|.+|+||||+|+..
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~A~~~  188 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQLTWGR  188 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTS
T ss_pred             HHHHHhcCCcccccCCCCCCHHHHHHHC
Confidence            9999999999999999999999999864

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-21  Score=187.35  Aligned_cols=118  Identities=30%  Similarity=0.442  Sum_probs=112.5

Q ss_pred             ccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 043342          234 EEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLH  313 (363)
Q Consensus       234 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh  313 (363)
                      .....+..|.||||.++..++.+++++|+++|++++..+..+.||||.++..++..+++++++.|+++|.+|..|+||||
T Consensus       256 ~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh  335 (408)
T d1n11a_         256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH  335 (408)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHH
Confidence            34456778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          314 YAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       314 ~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +|++.|+.++|++|+++||+++.+|.+|+||||+|+.+
T Consensus       336 ~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~  373 (408)
T d1n11a_         336 QAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL  373 (408)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            99999999999999999999999999999999999876

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=5.9e-21  Score=160.39  Aligned_cols=108  Identities=22%  Similarity=0.457  Sum_probs=80.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCccC------CCCCChHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          244 DAIHAFAREGDMDNLLKCIENGVSVNLR------DSEGRAPLHWAVDR---GHLNISELLVSKNADVNAKDNEGQTPLHY  314 (363)
Q Consensus       244 t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~------d~~g~TpLh~A~~~---g~~~iv~~Ll~~gadin~~d~~G~TpLh~  314 (363)
                      ..|+.|++.+++..+..++..|.+++..      +..|+||||+|+..   ++.+++++|+++|+++|.+|..|+||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            3455667777777777777777665543      45577788877753   56777777777788887777778888888


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          315 AVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       315 A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+..|+.+++++|+++|++++.+|.+|+||||+|++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  124 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL  124 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHc
Confidence            8888888888888888888888877888888877755

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=5.3e-21  Score=171.53  Aligned_cols=98  Identities=28%  Similarity=0.341  Sum_probs=92.4

Q ss_pred             ccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccC-CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLR-DSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY  314 (363)
Q Consensus       236 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~  314 (363)
                      +..+..|.||||+||..|+.+++++|++.+++.+.. +..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+
T Consensus       152 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~  231 (255)
T d1oy3d_         152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS  231 (255)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            456788999999999999999999999999887754 5679999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCC
Q 043342          315 AVVCDREAIAQFLVKQNAD  333 (363)
Q Consensus       315 A~~~g~~~iv~~Ll~~Gad  333 (363)
                      |+..++.+++++|+++||+
T Consensus       232 A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         232 ALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHTSSCHHHHHHHHHTTCC
T ss_pred             HHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999996

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=1e-20  Score=164.49  Aligned_cols=185  Identities=19%  Similarity=0.211  Sum_probs=149.4

Q ss_pred             hhhhhHHH-HHhcCCCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCc---ccccccccccccCCC
Q 043342          166 TARAKWQA-WQKLGAMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG---PVFSSFAYEEESGND  240 (363)
Q Consensus       166 ~~~ak~~a-w~~~g~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~---~ll~~~~~~~~~~~~  240 (363)
                      ...+..+. .++.|.||++.| ..++.++++.|+..+.... ..+..+.++.+.........   ...............
T Consensus        10 ~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (209)
T d1ot8a_          10 AQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADAN-SQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMH   88 (209)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT
T ss_pred             HCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            44556766 478999999986 5578899999998766543 34555566655444333211   111112222233455


Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 043342          241 LKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDR  320 (363)
Q Consensus       241 ~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~  320 (363)
                      .+.+..+.+.........+.|+..+++++.++..|.||||+++..+...+++.|+..+.++|.+|..|.||||+|+..|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~  168 (209)
T d1ot8a_          89 DGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGS  168 (209)
T ss_dssp             TCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccH
Confidence            57788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          321 EAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       321 ~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .+++++|+++|++++.+|..|+||||+|+.+
T Consensus       169 ~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~  199 (209)
T d1ot8a_         169 YEASKALLDNFANREITDHMDRLPRDVASER  199 (209)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.6e-21  Score=161.87  Aligned_cols=114  Identities=29%  Similarity=0.473  Sum_probs=105.5

Q ss_pred             ccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 043342          236 ESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYA  315 (363)
Q Consensus       236 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A  315 (363)
                      +..+..|.||||+|+ .|+.+++++|++++.+++..+..|.+||+.++..++.+++++++++|+++|.+|..|+||||+|
T Consensus        30 n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A  108 (156)
T d1bd8a_          30 DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA  108 (156)
T ss_dssp             TCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeeccc
Confidence            455778899999887 5889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          316 VVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       316 ~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +..|+.+++++|+ .|++++.+|.+|+||||+|+..
T Consensus       109 ~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~  143 (156)
T d1bd8a_         109 VQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQR  143 (156)
T ss_dssp             HHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHS
T ss_pred             ccccccccccccc-ccccccccCCCCCCHHHHHHHc
Confidence            9999999999887 7899999999999999999865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=8.5e-21  Score=157.39  Aligned_cols=140  Identities=29%  Similarity=0.329  Sum_probs=122.8

Q ss_pred             CCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHHH
Q 043342          179 AMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDN  257 (363)
Q Consensus       179 ~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~  257 (363)
                      +||++.| +.+..++|+.|+..+++.                                 ..+..|.||||+|+..++.+.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~---------------------------------~~~~~g~t~L~~a~~~~~~~~   49 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF---------------------------------TTDWLGTSPLHLAAQYGHFST   49 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC---------------------------------CCCTTCCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc---------------------------------ccccCCCcccccccccccccc
Confidence            3677765 567889999998754311                                 124567899999999999999


Q ss_pred             HHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 043342          258 LLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMK  337 (363)
Q Consensus       258 v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~  337 (363)
                      +..++.........+..+.+++++++...+.+++++|+.+|++++.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~  129 (153)
T d1awcb_          50 TEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ  129 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCccc
Confidence            99999888777777778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHhcC
Q 043342          338 DNDGNSPCHVCESD  351 (363)
Q Consensus       338 d~~G~TpL~~A~~~  351 (363)
                      |.+|.||||+|+.+
T Consensus       130 d~~g~Tpl~~A~~~  143 (153)
T d1awcb_         130 SKFCKTAFDISIDN  143 (153)
T ss_dssp             CTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHc
Confidence            99999999999876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-20  Score=163.28  Aligned_cols=175  Identities=21%  Similarity=0.215  Sum_probs=132.4

Q ss_pred             cCCCCHHHHH-hcCcccccccccc---ccccccccCCCCcchhhhhcCCCCCcc--cccccccccccCCCCchHHHHHHH
Q 043342          177 LGAMPPEEAM-QKYIDIVTELYPT---WAAGSSLKSKRGQEDAASTDSKAPMGP--VFSSFAYEEESGNDLKMDAIHAFA  250 (363)
Q Consensus       177 ~g~t~l~~A~-~~yv~~v~~Ll~~---~~~~~~~~~~~g~~~~~~a~~~~~~~~--ll~~~~~~~~~~~~~g~t~Lh~Aa  250 (363)
                      .|.||+|.|. .+..++++.|+..   ........+..|.||++.+...+....  .+.......+.....+.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            5899999865 4677888877642   112234466788888888877764322  222334444555666777888887


Q ss_pred             HcCCHHHHHHHHHc-------------------------------------CCCC-ccCCCCCChHHHHHHHcCCHHHHH
Q 043342          251 REGDMDNLLKCIEN-------------------------------------GVSV-NLRDSEGRAPLHWAVDRGHLNISE  292 (363)
Q Consensus       251 ~~g~~~~v~~LL~~-------------------------------------g~~v-n~~d~~g~TpLh~A~~~g~~~iv~  292 (363)
                      ..++...++.+...                                     ..+. ......+.++||.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            77776666555432                                     1111 123345789999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          293 LLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       293 ~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .++..|.+++.+|..|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+++
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=7.3e-21  Score=176.45  Aligned_cols=49  Identities=27%  Similarity=0.323  Sum_probs=47.6

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHh
Q 043342          301 VNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKDNDGNSPCHVCE  349 (363)
Q Consensus       301 in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~  349 (363)
                      +|.+|..|+||||+|++.|+.++|++|+++||+++++|+.|.||||+|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            6889999999999999999999999999999999999999999999986

>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=1.7e-21  Score=146.13  Aligned_cols=83  Identities=34%  Similarity=0.563  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCChhhHhHHhhhhhccccCCCCCCCCchhhhhhhhhHHHHHhcCCCCHHHHHhcCcccc
Q 043342          114 DEMFSAATAFVAASAAASSQKVSNDVQLQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIV  193 (363)
Q Consensus       114 ~~~f~~A~~~v~~~~~~~~~~~~~~~~L~lyalykqAt~G~~~~~~p~~~~~~~~ak~~aw~~~g~t~l~~A~~~yv~~v  193 (363)
                      ++.|+.|+++|+++..    +++++++|+|||||||||.|+|+.++|+++++.+++||+||.++++|+.++||..||+++
T Consensus         2 ~~~F~~A~~~v~~~~~----~~~~~~~L~LYalyKQat~Gd~~~~~P~~~~~~~~aKw~AW~~~~gms~~eA~~~YI~~v   77 (86)
T d1hb6a_           2 QAEFDKAAEEVKHLKT----KPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKV   77 (86)
T ss_dssp             HHHHHHHHHHGGGCSS----CCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC----CcCHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            5789999999988643    699999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc
Q 043342          194 TELYPTW  200 (363)
Q Consensus       194 ~~Ll~~~  200 (363)
                      ..|++.|
T Consensus        78 ~~l~~k~   84 (86)
T d1hb6a_          78 EELKKKY   84 (86)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.3e-20  Score=156.08  Aligned_cols=147  Identities=21%  Similarity=0.288  Sum_probs=123.6

Q ss_pred             HH-HHHhcCccccccccccccccccccCCCCcchhhhhcCCC--CCcccccccccccccCCCCchHHHHHHHHcCCHHHH
Q 043342          182 PE-EAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKA--PMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNL  258 (363)
Q Consensus       182 l~-~A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~--~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v  258 (363)
                      ++ .|+.+.+++|+.|+.+........+..|.++++.+....  .+..++. ...+.+..+..|.+||+.++..++.+++
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFLDTL   84 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            44 467889999999997655455567788999998776422  2222332 2344566777889999999999999999


Q ss_pred             HHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 043342          259 LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ  330 (363)
Q Consensus       259 ~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  330 (363)
                      +.++++|+++|.+|..|.||||+||..|+.+++++|+ .|++++.+|..|+||||+|+..|+.+++++|++|
T Consensus        85 ~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          85 KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999999999999999887 7899999999999999999999999999999976

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8e-20  Score=151.88  Aligned_cols=139  Identities=26%  Similarity=0.397  Sum_probs=123.1

Q ss_pred             CCHHH-HHhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHHHH
Q 043342          180 MPPEE-AMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNL  258 (363)
Q Consensus       180 t~l~~-A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v  258 (363)
                      .++|. |+.+.+++|+.|+..+.+.                                +..+..|.||||+|+ .|+.+++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~--------------------------------n~~d~~g~TpL~~A~-~~~~ei~   49 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV--------------------------------NAQNGFGRTALQVMK-LGNPEIA   49 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT--------------------------------TCCCTTSCCHHHHCC-SSCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc--------------------------------CccCCcccccccccc-ccccccc
Confidence            35665 5778899999998854422                                234667899999886 7899999


Q ss_pred             HHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCCCC
Q 043342          259 LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNA-DIGMK  337 (363)
Q Consensus       259 ~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Ga-d~~~~  337 (363)
                      ++|+++|++++.++..|.++|+.++..++..+++.|+..+.+++..+..|.+|||+|+..++.+++++|+++|+ +++.+
T Consensus        50 ~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  129 (156)
T d1ihba_          50 RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR  129 (156)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCC
T ss_pred             ccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999886 89999


Q ss_pred             CCCCCcHHHHHhcC
Q 043342          338 DNDGNSPCHVCESD  351 (363)
Q Consensus       338 d~~G~TpL~~A~~~  351 (363)
                      |.+|.||||+|+..
T Consensus       130 d~~g~TpL~~A~~~  143 (156)
T d1ihba_         130 NHKGDTACDLARLY  143 (156)
T ss_dssp             CTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHc
Confidence            99999999999865

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1e-19  Score=152.78  Aligned_cols=96  Identities=19%  Similarity=0.307  Sum_probs=90.0

Q ss_pred             CCCCchHHHHHHHHc---CCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 043342          238 GNDLKMDAIHAFARE---GDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHY  314 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~---g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~  314 (363)
                      .+..|+||||+|++.   |..+++++|+++|+++|.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  120 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  120 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHH
Confidence            345688999999985   67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCC
Q 043342          315 AVVCDREAIAQFLVKQNAD  333 (363)
Q Consensus       315 A~~~g~~~iv~~Ll~~Gad  333 (363)
                      |+..|+.+++++|++.++.
T Consensus       121 A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         121 AKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHhCCC
Confidence            9999999999999997654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.3e-18  Score=144.38  Aligned_cols=107  Identities=28%  Similarity=0.438  Sum_probs=103.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 043342          244 DAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAI  323 (363)
Q Consensus       244 t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~i  323 (363)
                      ++||+||..|+.++|+.|+++|+++|.+|..|+||||+|+ .++.+++++|+++|++++.++..|.++|++++..++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            8999999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          324 AQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       324 v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +++|++++.+++..+..|.+|+|+|+..
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~  109 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKE  109 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccc
Confidence            9999999999999999999999999766

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=2.4e-18  Score=151.38  Aligned_cols=173  Identities=20%  Similarity=0.237  Sum_probs=146.7

Q ss_pred             CCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCC---ccccccccc--ccccCCCCchHHHHHHHHc
Q 043342          179 AMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPM---GPVFSSFAY--EEESGNDLKMDAIHAFARE  252 (363)
Q Consensus       179 ~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~---~~ll~~~~~--~~~~~~~~g~t~Lh~Aa~~  252 (363)
                      ++|+|.| +.+.++.++.|+.........++.+|.|+++.+...+..   ..++.....  .....+..|.+++|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4789986 557889999999876667777889999999988877743   333333221  1245677889999999999


Q ss_pred             CCHHHHHHHHHcCCCC--ccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 043342          253 GDMDNLLKCIENGVSV--NLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ  330 (363)
Q Consensus       253 g~~~~v~~LL~~g~~v--n~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  330 (363)
                      +..++++.++..+...  ...+..+.|+|++++..++.++++.|+..|.+.+.+|..|+||||+|+..|+.+++++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence            9999999999887654  44667799999999999999999999999999999999999999999999999999999998


Q ss_pred             C-CCCCCCCCCCCcHHHHHhcC
Q 043342          331 N-ADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       331 G-ad~~~~d~~G~TpL~~A~~~  351 (363)
                      | .+++.+|.+|+||||+|+..
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~  182 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAE  182 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHT
T ss_pred             ccccccccccccCCchhhhccc
Confidence            7 68899999999999999876

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.3e-19  Score=143.96  Aligned_cols=118  Identities=20%  Similarity=0.210  Sum_probs=101.1

Q ss_pred             CCCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHHH
Q 043342          179 AMPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDN  257 (363)
Q Consensus       179 ~t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~  257 (363)
                      ...++.| ..+++++|+.|+..+.+                                .+..+..|.|+||+|+ .|+.++
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad--------------------------------~n~~~~~g~t~l~~a~-~g~~~~   50 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGAN--------------------------------PNAPNSYGRRPIQVMM-MGSARV   50 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCC--------------------------------TTCCCSSSCCTTTSSC-TTCHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCc--------------------------------cccccccccccccccc-cccccc
Confidence            3456664 56788888888875432                                2234566789999775 799999


Q ss_pred             HHHHHHcCCCCccCCCCCC-hHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 043342          258 LLKCIENGVSVNLRDSEGR-APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVK  329 (363)
Q Consensus       258 v~~LL~~g~~vn~~d~~g~-TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  329 (363)
                      +++|+++|++++.++..+. ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+.
T Consensus        51 v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          51 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999998865 69999999999999999999999999999999999999999999999999975

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.6e-18  Score=149.06  Aligned_cols=142  Identities=21%  Similarity=0.250  Sum_probs=119.7

Q ss_pred             CCcchhhhhcCCCC---Cccccccc---ccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHH
Q 043342          210 RGQEDAASTDSKAP---MGPVFSSF---AYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAV  283 (363)
Q Consensus       210 ~g~~~~~~a~~~~~---~~~ll~~~---~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~  283 (363)
                      +|.|++|.+...+.   +..++..+   +...+..+..|+||||+||..|+.+++++|+++|++++.+|..|.||||+++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            47888887765553   33333332   3345678889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCC------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHhcC
Q 043342          284 DRGHLNISELLVSKNADV------NAKDNEGQTPLHYAVVCDREAIAQFLVKQNADIGMKD-NDGNSPCHVCESD  351 (363)
Q Consensus       284 ~~g~~~iv~~Ll~~gadi------n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d-~~G~TpL~~A~~~  351 (363)
                      ..++..+++.|+..+...      +.....|.||||+|+..++.+++++|+..|+.++.++ .+|.||||+|+..
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~  155 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  155 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccc
Confidence            999999999999887653      3345678999999999999999999999999998876 5799999999876

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.4e-18  Score=139.85  Aligned_cols=114  Identities=25%  Similarity=0.290  Sum_probs=99.3

Q ss_pred             HHhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHc
Q 043342          185 AMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIEN  264 (363)
Q Consensus       185 A~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~  264 (363)
                      |..+..++|+.|+..+.+                                .+..+..|+||||+|+..|+.+++++|++.
T Consensus         9 ~~~G~~~~v~~Ll~~g~d--------------------------------~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~   56 (130)
T d1ycsb1           9 SLEGEFDLVQRIIYEVDD--------------------------------PSLPNDEGITALHNAVCAGHTEIVKFLVQF   56 (130)
T ss_dssp             HHHTCHHHHHHHTSTTSS--------------------------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCC--------------------------------cccccccccccccccccccccccccccccc
Confidence            567788888888875432                                234567789999999999999999999999


Q ss_pred             CCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHH--HHcCCHHHHHHHHhC
Q 043342          265 GVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDN-EGQTPLHYA--VVCDREAIAQFLVKQ  330 (363)
Q Consensus       265 g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~-~G~TpLh~A--~~~g~~~iv~~Ll~~  330 (363)
                      |++++.+|..|+||||+|+..|+.+++++|+++|++++.++. .|+||++++  +..|+.+++++|+..
T Consensus        57 g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          57 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             ccccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999999999999999999999999999999998775 588988776  467889999999864

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.73  E-value=2.9e-18  Score=154.74  Aligned_cols=162  Identities=19%  Similarity=0.201  Sum_probs=125.2

Q ss_pred             hhhHHHHHhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCCCCcc---c----------------
Q 043342          168 RAKWQAWQKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGP---V----------------  227 (363)
Q Consensus       168 ~ak~~aw~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~---l----------------  227 (363)
                      ++..++.+..|.||++.|. .+..++++.|+..+.+.. .++..|.++++.+...+....   +                
T Consensus        64 Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~  142 (277)
T d2fo1e1          64 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN  142 (277)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT
T ss_pred             CCCccccCCCCCeeeccccccccccccccccccccccc-cccccccccccchhhhcchhhhhhhhhcccccccccccccc
Confidence            3456677788999999874 577899999998776543 355667777654332221000   0                


Q ss_pred             ------------------------------ccccccccccCCCCchHHHHHHHHcCCHHHHHHHH-HcCCCCccCCCCCC
Q 043342          228 ------------------------------FSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCI-ENGVSVNLRDSEGR  276 (363)
Q Consensus       228 ------------------------------l~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL-~~g~~vn~~d~~g~  276 (363)
                                                    ...........+..|.|+||.++..++.+.++.++ ..+.+++.+|..|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~  222 (277)
T d2fo1e1         143 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK  222 (277)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCC
T ss_pred             cchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCC
Confidence                                          00001112334566889999999999999998765 56788999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 043342          277 APLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQ  330 (363)
Q Consensus       277 TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  330 (363)
                      ||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|++.
T Consensus       223 tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         223 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999864

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.5e-18  Score=160.23  Aligned_cols=181  Identities=23%  Similarity=0.327  Sum_probs=150.6

Q ss_pred             hHHHHHhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCCCCc--ccccccccccccCCCCchHHH
Q 043342          170 KWQAWQKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMG--PVFSSFAYEEESGNDLKMDAI  246 (363)
Q Consensus       170 k~~aw~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~--~ll~~~~~~~~~~~~~g~t~L  246 (363)
                      ..+..+..+.++++.|. .+..++++.|+..+.... .....+.++++.........  ..+..........+..+.|||
T Consensus       157 ~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCccc-ccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence            34455566778888875 477889999988766543 35667788887665554322  122222333345566788999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 043342          247 HAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREAIAQF  326 (363)
Q Consensus       247 h~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~iv~~  326 (363)
                      |+|+..++.++++.++..+..++..+..|.||||.|+..++.+++++|+++|++++..+..+.||||+++..++..++++
T Consensus       236 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~  315 (408)
T d1n11a_         236 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF  315 (408)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHH
T ss_pred             HHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          327 LVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       327 Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ++++|++++.+|.+|.||||+|+++
T Consensus       316 ll~~g~~in~~d~~G~T~Lh~A~~~  340 (408)
T d1n11a_         316 LLQHQADVNAKTKLGYSPLHQAAQQ  340 (408)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             eccccccccccCCCCCCHHHHHHHc
Confidence            9999999999999999999999876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.1e-17  Score=151.53  Aligned_cols=83  Identities=30%  Similarity=0.496  Sum_probs=48.5

Q ss_pred             HHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 043342          256 DNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSK-NADVNAKDNEGQTPLHYAVVCDREAIAQFLVKQNADI  334 (363)
Q Consensus       256 ~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~  334 (363)
                      .++++|+++|++++.++..|.||||+|+..|+.+++++|++. |+++|.+|.+|.||||+|+..|+.++|++|+++||++
T Consensus       200 ~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             HHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             HHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            455555555555555555556666666665555666555543 5555555555666666666666666666666666665


Q ss_pred             CCCC
Q 043342          335 GMKD  338 (363)
Q Consensus       335 ~~~d  338 (363)
                      |++|
T Consensus       280 n~~d  283 (285)
T d1wdya_         280 DCGD  283 (285)
T ss_dssp             CCSS
T ss_pred             Cccc
Confidence            5554

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.4e-19  Score=143.36  Aligned_cols=105  Identities=25%  Similarity=0.212  Sum_probs=91.6

Q ss_pred             CCHHHH-HhcCccccccccccccccccccCCCCcchhhhhcCCCCCcccccccccccccCCCCchHHHHHHHHcCCHHHH
Q 043342          180 MPPEEA-MQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMDNL  258 (363)
Q Consensus       180 t~l~~A-~~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~~~~~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v  258 (363)
                      ||+..| ..+++++|+.|+..+.+                                .+..+..|.||||+|+..|+.+++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d--------------------------------~n~~~~~g~t~lh~A~~~~~~~~~   51 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGED--------------------------------VNRTLEGGRKPLHYAADCGQLEIL   51 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCC--------------------------------CCCCSSSSCCTTHHHHHHSTTTHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhc--------------------------------cccccccccccccccccccccccc
Confidence            466665 45678888888864432                                234566789999999999999999


Q ss_pred             HHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 043342          259 LKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV  316 (363)
Q Consensus       259 ~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~  316 (363)
                      ++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|.
T Consensus        52 ~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          52 EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cccccccceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.71  E-value=4.6e-19  Score=167.66  Aligned_cols=112  Identities=12%  Similarity=0.016  Sum_probs=60.3

Q ss_pred             CCCchHHHHHHHHcCCHHHHHH---HHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCCcHHH
Q 043342          239 NDLKMDAIHAFAREGDMDNLLK---CIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD--NEGQTPLH  313 (363)
Q Consensus       239 ~~~g~t~Lh~Aa~~g~~~~v~~---LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d--~~G~TpLh  313 (363)
                      +..|.|+||+||..|+.+++++   |+..|+++|.+|..|+||||+||..|+.++|++|++.|++++..+  .+|+||||
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR  166 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhH
Confidence            3445566666666666544433   455566666666566666666666666666666666666655543  23556666


Q ss_pred             HHHHcCCHHHHHHHHhCCCCC---CCCCCCCCcHHHHHhc
Q 043342          314 YAVVCDREAIAQFLVKQNADI---GMKDNDGNSPCHVCES  350 (363)
Q Consensus       314 ~A~~~g~~~iv~~Ll~~Gad~---~~~d~~G~TpL~~A~~  350 (363)
                      +|+..|+.++|++|+++|++.   +..+.+|.||++.|+.
T Consensus       167 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~  206 (346)
T d2ajaa1         167 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG  206 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhh
Confidence            666666666666666655543   2223344555555543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=2.6e-17  Score=142.61  Aligned_cols=102  Identities=16%  Similarity=0.177  Sum_probs=93.4

Q ss_pred             ccccccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 043342          226 PVFSSFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKD  305 (363)
Q Consensus       226 ~ll~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d  305 (363)
                      .++.....+.+..+..|.|+||.++..+...+++.++..+.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       107 ~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d  186 (209)
T d1ot8a_         107 EDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITD  186 (209)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             hhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcC
Confidence            33444444556677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHH
Q 043342          306 NEGQTPLHYAVVCDREAIAQFL  327 (363)
Q Consensus       306 ~~G~TpLh~A~~~g~~~iv~~L  327 (363)
                      ..|+||||+|++.|+.++|++|
T Consensus       187 ~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         187 HMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=4.4e-17  Score=148.37  Aligned_cols=112  Identities=29%  Similarity=0.534  Sum_probs=107.6

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 043342          240 DLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCD  319 (363)
Q Consensus       240 ~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g  319 (363)
                      ..+.|+|+.||..|+.++|++||++|+++|.+|..|+||||+|+..|+.+++++|+++|++.+..+..+.||||+++..+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          320 REAIAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       320 ~~~iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      +.++++.|+++|+..+..|..|.+|+++|+.+
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~  149 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             ccchhhcccccCcccccccccCcccccccccc
Confidence            99999999999999999999999999998755

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.6e-17  Score=138.71  Aligned_cols=142  Identities=18%  Similarity=0.194  Sum_probs=95.4

Q ss_pred             CCcchhhhhcCCCCCcc---ccc---ccccccccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHH
Q 043342          210 RGQEDAASTDSKAPMGP---VFS---SFAYEEESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAV  283 (363)
Q Consensus       210 ~g~~~~~~a~~~~~~~~---ll~---~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~  283 (363)
                      +|.||+|.++..+.+..   ++.   ..+.+.+..+..|+||||+|+..|+.++++.|+++|++++..+..|.++++.|+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            46666666666554431   222   122334555666677777777777777777777776666666666666666666


Q ss_pred             HcCCHHHHHHHHhC-------------------------------------CCC-CCCCCCCCCcHHHHHHHcCCHHHHH
Q 043342          284 DRGHLNISELLVSK-------------------------------------NAD-VNAKDNEGQTPLHYAVVCDREAIAQ  325 (363)
Q Consensus       284 ~~g~~~iv~~Ll~~-------------------------------------gad-in~~d~~G~TpLh~A~~~g~~~iv~  325 (363)
                      ..++..+++.+...                                     ..+ .......|.++||+|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            65555554443321                                     111 1122446788999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          326 FLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       326 ~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      .++++|.+++.+|..|.||||+|+..
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~  187 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGR  187 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             hhhhhccccccccccCcchHHHHHHc
Confidence            99999999999999999999999865

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-16  Score=144.50  Aligned_cols=114  Identities=27%  Similarity=0.339  Sum_probs=103.4

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHc-CCCCccCCCCCChHHHHHHHcC----CHHHHHHHHhCCCCCCCCCCCCCcHH
Q 043342          238 GNDLKMDAIHAFAREGDMDNLLKCIEN-GVSVNLRDSEGRAPLHWAVDRG----HLNISELLVSKNADVNAKDNEGQTPL  312 (363)
Q Consensus       238 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~-g~~vn~~d~~g~TpLh~A~~~g----~~~iv~~Ll~~gadin~~d~~G~TpL  312 (363)
                      ....|.||||+|++.|+.+++++|+++ |++++..+..|.++++.+...+    ...++++|+++|++++.++..|.|||
T Consensus       144 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L  223 (285)
T d1wdya_         144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  223 (285)
T ss_dssp             TTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             hcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCcc
Confidence            455688999999999999999999975 7999999999998888766543    35799999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHhcC
Q 043342          313 HYAVVCDREAIAQFLVK-QNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       313 h~A~~~g~~~iv~~Ll~-~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      |+|+..|+.+++++|++ .|++++.+|.+|.||||+|+..
T Consensus       224 ~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~  263 (285)
T d1wdya_         224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHT
T ss_pred             chhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            99999999999999997 5999999999999999999877

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2.2e-16  Score=130.18  Aligned_cols=108  Identities=28%  Similarity=0.399  Sum_probs=103.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHH
Q 043342          243 MDAIHAFAREGDMDNLLKCIENGVSVNLRDSEGRAPLHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAVVCDREA  322 (363)
Q Consensus       243 ~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~~~g~~~  322 (363)
                      .||||.||+.|+.++|+.||++|++++ .|..|+||||+|+..++.++++.++......+..+..+.+++++++...+.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            499999999999999999999999887 6889999999999999999999999998888888899999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHhcC
Q 043342          323 IAQFLVKQNADIGMKDNDGNSPCHVCESD  351 (363)
Q Consensus       323 iv~~Ll~~Gad~~~~d~~G~TpL~~A~~~  351 (363)
                      ++++|+.+|++++.+|.+|.||||+|+..
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~  110 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEH  110 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             eeecccccCCccccccccCchHHHhhhhc
Confidence            99999999999999999999999999877

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.64  E-value=7.5e-19  Score=166.16  Aligned_cols=104  Identities=14%  Similarity=0.104  Sum_probs=89.3

Q ss_pred             cccCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCccCC--CCCChHHHHHHHcCCHHHHHHHHhCCCCC---CCCCCCCC
Q 043342          235 EESGNDLKMDAIHAFAREGDMDNLLKCIENGVSVNLRD--SEGRAPLHWAVDRGHLNISELLVSKNADV---NAKDNEGQ  309 (363)
Q Consensus       235 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~g~~vn~~d--~~g~TpLh~A~~~g~~~iv~~Ll~~gadi---n~~d~~G~  309 (363)
                      .+..+..|.||||+||+.|+.++|++|++.|++++..+  ..|.||||+||..|+.+++++|++.|++.   +..+..|.
T Consensus       119 in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~  198 (346)
T d2ajaa1         119 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY  198 (346)
T ss_dssp             CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCc
Confidence            45567788999999999999999999999999998865  45999999999999999999999999865   34456677


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 043342          310 TPLHYAVVCDREAIAQFLVKQNADIGMKD  338 (363)
Q Consensus       310 TpLh~A~~~g~~~iv~~Ll~~Gad~~~~d  338 (363)
                      ||+|+|+..|+.++|++|+++|++++..+
T Consensus       199 t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~  227 (346)
T d2ajaa1         199 AFRWAAVGRGHHNVINFLLDCPVMLAYAE  227 (346)
T ss_dssp             HHHHHHSTTCCHHHHHHHTTSHHHHHHHH
T ss_pred             chhhHHhhcCHHHHHHHHHhCCCCcchHH
Confidence            88899999999999999999998775443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=8.8e-17  Score=148.50  Aligned_cols=141  Identities=13%  Similarity=0.162  Sum_probs=109.3

Q ss_pred             HhcCCCCHHHHH-hcCccccccccccccccccccCCCCcchhhhhcCCC------CCcccccccccccccCCCCchHHHH
Q 043342          175 QKLGAMPPEEAM-QKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKA------PMGPVFSSFAYEEESGNDLKMDAIH  247 (363)
Q Consensus       175 ~~~g~t~l~~A~-~~yv~~v~~Ll~~~~~~~~~~~~~g~~~~~~a~~~~------~~~~ll~~~~~~~~~~~~~g~t~Lh  247 (363)
                      +..|.||+|.|. .+++++|+.|+..+++.. .++..|.||++.+...+      .+..++..+.......+..|+|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            577999999864 578999999998877554 57788999999876533      3334455445555667788999999


Q ss_pred             HHHHcCC----HHH--------HHHHHHcCC-------------------------------------CCccCCCCCChH
Q 043342          248 AFAREGD----MDN--------LLKCIENGV-------------------------------------SVNLRDSEGRAP  278 (363)
Q Consensus       248 ~Aa~~g~----~~~--------v~~LL~~g~-------------------------------------~vn~~d~~g~Tp  278 (363)
                      +++..+.    ...        +.+++..+.                                     .+|.+|..|+||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~Tp  262 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  262 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCH
Confidence            9887554    222        223333221                                     168889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 043342          279 LHWAVDRGHLNISELLVSKNADVNAKDNEGQTPLHYAV  316 (363)
Q Consensus       279 Lh~A~~~g~~~iv~~Ll~~gadin~~d~~G~TpLh~A~  316 (363)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||||+
T Consensus       263 Lh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         263 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999999999999999999985

>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.02  E-value=1.1  Score=32.69  Aligned_cols=68  Identities=13%  Similarity=0.092  Sum_probs=49.3

Q ss_pred             hhcCCCCChhhHhHHhhhhhccccCCCCCCC--Cchhhh-------------h-----hhhhHHHHHhcCCCCHHHHHhc
Q 043342          129 AASSQKVSNDVQLQLYALYKIATEGPCSAPQ--PSALKM-------------T-----ARAKWQAWQKLGAMPPEEAMQK  188 (363)
Q Consensus       129 ~~~~~~~~~~~~L~lyalykqAt~G~~~~~~--p~~~~~-------------~-----~~ak~~aw~~~g~t~l~~A~~~  188 (363)
                      -.|....+.++-.+|.|+.-|+..|+++...  ++.+..             .     -..-.+.|..+.+|+..+|...
T Consensus        24 l~G~~~~~~~~a~~LAal~~Qae~GD~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~I~~~hk~l~G~s~~~A~~~  103 (111)
T d1h4ra1          24 LDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEME  103 (111)
T ss_dssp             HTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHH
T ss_pred             HcCCCCCCHHHHHHHHHHHHHHHhCCCChhhcccchhhhhhcCCchHHHHhhccHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3466688999999999999999999987432  222111             0     1112236888999999999999


Q ss_pred             Cccccccc
Q 043342          189 YIDIVTEL  196 (363)
Q Consensus       189 yv~~v~~L  196 (363)
                      |+.+++.|
T Consensus       104 yL~~~~~L  111 (111)
T d1h4ra1         104 YLKIAQDL  111 (111)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHhhC
Confidence            99888765

>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.63  E-value=1.1  Score=32.37  Aligned_cols=68  Identities=12%  Similarity=0.060  Sum_probs=50.7

Q ss_pred             hhcCCCCChhhHhHHhhhhhccccCCCCCC--CCchhhh----------hhhhhHHHHHhcCCCCHHHHHhcCccccccc
Q 043342          129 AASSQKVSNDVQLQLYALYKIATEGPCSAP--QPSALKM----------TARAKWQAWQKLGAMPPEEAMQKYIDIVTEL  196 (363)
Q Consensus       129 ~~~~~~~~~~~~L~lyalykqAt~G~~~~~--~p~~~~~----------~~~ak~~aw~~~g~t~l~~A~~~yv~~v~~L  196 (363)
                      ..|....+.++-..|.||.-|+..|+++..  .+..+..          .-..-...|.++.+|+..+|+..|+.+++.|
T Consensus        24 ~~G~~~~~~~~a~~Laal~~Qae~GD~~~~~~~~~yl~~~~~~p~~~~~~~~~I~~~h~~l~G~s~~~A~~~fL~~~~~l  103 (106)
T d1gg3a1          24 VAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKL  103 (106)
T ss_dssp             HTTSSCCCHHHHHHHHHHHHHHHHCSCCTTSCSSCCGGGSCCCSSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHS
T ss_pred             HhcccCCCHHHHHHHHHHHHHHHhCCCCccccchhhhhHHhcCCccHHHHHHHHHHHHHHccCcCHHHHHHHHHHHHhcC
Confidence            346668899999999999999999998743  2222221          1122234788999999999999999988876